r-bioc-hdf5array →
1.30.1-1 →
armhf → 2024-02-23 06:18:29
sbuild (Debian sbuild) 0.85.0 (04 January 2023) on test2023
+==============================================================================+
| r-bioc-hdf5array 1.30.1-1 (armhf) Fri, 23 Feb 2024 06:15:44 +0000 |
+==============================================================================+
Package: r-bioc-hdf5array
Version: 1.30.1-1
Source Version: 1.30.1-1
Distribution: trixie-staging
Machine Architecture: arm64
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-a5b324f6-cdd3-4195-bfa2-a3428e78ce05' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-hdf5array-tvn74w/resolver-5IedJX' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.4 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.1 MB]
Fetched 29.6 MB in 5s (5497 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-hdf5array' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-hdf5array.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-hdf5array.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 8107 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main r-bioc-hdf5array 1.30.1-1 (dsc) [2312 B]
Get:2 http://172.17.4.1/private trixie-staging/main r-bioc-hdf5array 1.30.1-1 (tar) [8098 kB]
Get:3 http://172.17.4.1/private trixie-staging/main r-bioc-hdf5array 1.30.1-1 (diff) [6180 B]
Fetched 8107 kB in 1s (8169 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-hdf5array-tvn74w/r-bioc-hdf5array-1.30.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-hdf5array-tvn74w' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-delayedarray (>= 0.27.2), r-bioc-rhdf5, r-cran-matrix, r-bioc-rhdf5filters, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-iranges, r-bioc-s4arrays, r-bioc-rhdf5lib, libhdf5-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-delayedarray (>= 0.27.2), r-bioc-rhdf5, r-cran-matrix, r-bioc-rhdf5filters, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-iranges, r-bioc-s4arrays, r-bioc-rhdf5lib, libhdf5-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [820 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [852 B]
Fetched 2281 B in 0s (0 B/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-14-base
gettext gettext-base gfortran gfortran-13 groff-base hdf5-helpers
icu-devtools intltool-debian libaec-dev libaec0 libalgorithm-c3-perl
libarchive-zip-perl libasan8 libatomic1 libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libblosc1 libbrotli1 libbsd0
libbz2-dev libcairo2 libcc1-0 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
libcurl4-openssl-dev libdata-optlist-perl libdatrie1 libdebhelper-perl
libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgcc-s1 libgfortran-13-dev libgfortran5
libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1
libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100
libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhttp-date-perl
libhttp-message-perl libice6 libicu-dev libicu72 libio-html-perl libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3
liblerc4 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses6 libnghttp2-14
libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsharpyuv0 libsm6 libsnappy1v5 libssh2-1
libssl-dev libstdc++6 libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl
libsub-override-perl libswitch-perl libsz2 libtcl8.6 libthai-data libthai0
libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libubsan1
libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 m4 man-db openssl pkg-config pkgconf pkgconf-bin po-debconf
r-base-core r-base-dev r-bioc-biocgenerics r-bioc-delayedarray
r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters
r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-crayon r-cran-lattice
r-cran-matrix r-cran-matrixstats sensible-utils ucf unzip x11-common xauth
xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make
postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-13-doc libcoarrays-dev groff liblapack-doc
libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev
low-memory-monitor libhdf5-doc icu-doc liblzma-doc ncurses-doc
libscalar-number-perl readline-doc libssl-doc tcl8.6 tk8.6 libtool-doc
gcj-jdk libbusiness-isbn-perl libregexp-ipv6-perl libwww-perl
libcurl4-gnutls-dev m4-doc apparmor less www-browser libmail-box-perl
elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base
texlive-latex-base texlive-plain-generic texlive-fonts-recommended
texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
texlive-latex-extra texinfo r-bioc-biobase r-bioc-genomicranges
r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy
r-bioc-deseq2 r-bioc-annotate r-cran-runit r-bioc-biocparallel
r-bioc-hdf5array r-bioc-genefilter r-bioc-summarizedexperiment r-cran-lobstr
r-bioc-delayedmatrixstats r-cran-knitr r-cran-rmarkdown r-bioc-biocstyle
r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-sparsematrixstats
r-cran-testthat r-cran-bit64 r-cran-bench r-cran-dplyr r-cran-ggplot2
r-cran-mockery r-cran-tinytest r-bioc-shortread r-bioc-graph
r-cran-data.table r-cran-rstudioapi
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libio-compress-brotli-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html r-cran-testthat r-cran-withr
r-cran-mockery r-cran-base64enc r-cran-ggplot2 r-cran-knitr r-cran-markdown
r-cran-r.devices r-cran-r.rsp libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-14-base
gettext gettext-base gfortran gfortran-13 groff-base hdf5-helpers
icu-devtools intltool-debian libaec-dev libaec0 libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libblosc1 libbrotli1 libbsd0 libbz2-dev libcairo2
libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl
libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-13-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102
libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhttp-date-perl
libhttp-message-perl libice6 libicu-dev libicu72 libio-html-perl libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3
liblerc4 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses6 libnghttp2-14
libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsharpyuv0 libsm6 libsnappy1v5 libssh2-1
libssl-dev libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl
libsub-override-perl libswitch-perl libsz2 libtcl8.6 libthai-data libthai0
libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0
liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 m4 man-db openssl pkg-config pkgconf pkgconf-bin po-debconf
r-base-core r-base-dev r-bioc-biocgenerics r-bioc-delayedarray
r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters
r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-crayon r-cran-lattice
r-cran-matrix r-cran-matrixstats sbuild-build-depends-main-dummy
sensible-utils ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
libasan8 libatomic1 libcc1-0 libgcc-s1 libgomp1 libstdc++6 libubsan1
7 upgraded, 201 newly installed, 0 to remove and 0 not upgraded.
Need to get 117 MB of archives.
After this operation, 320 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [968 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf gcc-14-base armhf 14-20240201-3+rpi1 [42.5 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf libatomic1 armhf 14-20240201-3+rpi1 [8512 B]
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Get:5 http://172.17.4.1/private trixie-staging/main armhf libstdc++6 armhf 14-20240201-3+rpi1 [591 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.8-1 [65.5 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.3-6 [81.4 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-3 [1358 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf sensible-utils all 0.0.22 [22.4 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.1.5-1 [1190 kB]
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Get:14 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-14 [157 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf ucf all 3.0043+nmu1 [55.2 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
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Get:21 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
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Get:24 http://172.17.4.1/private trixie-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.13 [85.0 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
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Get:35 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-14 [1203 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.13 [889 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf zip armhf 3.0-13 [207 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf unzip armhf 6.0-28 [147 kB]
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Get:73 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 14-20240201-3+rpi1 [257 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.12.0-3 [1692 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf fontconfig armhf 2.14.2-6 [461 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-2 [62.8 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.3.0-2 [2152 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libthai-data all 0.1.29-2 [168 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libdatrie1 armhf 0.2.13-3 [34.3 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libthai0 armhf 0.1.29-2 [46.1 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libpango-1.0-0 armhf 1.51.0+ds-4 [189 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf libpangoft2-1.0-0 armhf 1.51.0+ds-4 [40.8 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libpangocairo-1.0-0 armhf 1.51.0+ds-4 [31.1 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2+b1 [906 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.19-1 [39.0 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-4 [132 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.3.2-0.4 [106 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.3.2-0.4 [262 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-4 [299 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf libxt6 armhf 1:1.2.1-1.1 [155 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf r-base-core armhf 4.3.2-1 [26.4 MB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf libgfortran-13-dev armhf 13.2.0-9+rpi1 [293 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf gfortran-13 armhf 13.2.0-9+rpi1 [7837 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf gfortran armhf 4:13.2.0-1+rpi1 [1424 B]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libblas-dev armhf 3.12.0-3 [108 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf liblapack-dev armhf 3.12.0-3 [3221 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.4+20240113-1 [80.9 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf libncurses-dev armhf 6.4+20240113-1 [289 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf libreadline-dev armhf 8.2-3 [124 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [258 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf libpcre2-16-0 armhf 10.42-4 [211 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf libpcre2-32-0 armhf 10.42-4 [201 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf libpcre2-posix3 armhf 10.42-4 [55.1 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf libpcre2-dev armhf 10.42-4 [648 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.3.dfsg-3 [903 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf libpng-dev armhf 1.6.42-1 [338 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf liblzma-dev armhf 5.4.5-0.3 [278 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf icu-devtools armhf 72.1-4 [174 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf libicu-dev armhf 72.1-4 [9956 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf xauth armhf 1:1.1.2-1 [32.4 kB]
Get:123 http://172.17.4.1/private trixie-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf r-base-dev all 4.3.2-1 [4504 B]
Get:128 http://172.17.4.1/private trixie-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf libclone-perl armhf 0.46-1+b1 [13.2 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf libhttp-date-perl all 6.06-1 [10.7 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf liburi-perl all 5.27-1 [98.4 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf libhttp-message-perl all 6.45-1 [82.0 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf libparams-util-perl armhf 1.102-2+b2 [23.5 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf libsub-install-perl all 0.929-1 [10.5 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b2 [10.4 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf libdevel-callchecker-perl armhf 0.008-2+b1 [15.0 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf libparams-classify-perl armhf 0.015-2+b2 [21.4 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:146 http://172.17.4.1/private trixie-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:147 http://172.17.4.1/private trixie-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:148 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:149 http://172.17.4.1/private trixie-staging/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get:150 http://172.17.4.1/private trixie-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b2 [13.8 kB]
Get:151 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:152 http://172.17.4.1/private trixie-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:153 http://172.17.4.1/private trixie-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:154 http://172.17.4.1/private trixie-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:155 http://172.17.4.1/private trixie-staging/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get:156 http://172.17.4.1/private trixie-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:157 http://172.17.4.1/private trixie-staging/main armhf libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get:158 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:159 http://172.17.4.1/private trixie-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:160 http://172.17.4.1/private trixie-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:161 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:162 http://172.17.4.1/private trixie-staging/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get:163 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b2 [18.4 kB]
Get:164 http://172.17.4.1/private trixie-staging/main armhf libmoose-perl armhf 2.2207-1 [765 kB]
Get:165 http://172.17.4.1/private trixie-staging/main armhf libvariable-magic-perl armhf 0.63-1+b2 [41.5 kB]
Get:166 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:167 http://172.17.4.1/private trixie-staging/main armhf libsub-identify-perl armhf 0.14-3+b1 [10.9 kB]
Get:168 http://172.17.4.1/private trixie-staging/main armhf libsub-name-perl armhf 0.27-1+b1 [12.1 kB]
Get:169 http://172.17.4.1/private trixie-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:170 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 8.5.0-2+rpi1 [372 kB]
Get:171 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-perl armhf 4.17-10+b1 [55.8 kB]
Get:172 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:173 http://172.17.4.1/private trixie-staging/main armhf dh-r all 20231212 [42.2 kB]
Get:174 http://172.17.4.1/private trixie-staging/main armhf hdf5-helpers armhf 1.10.10+repack-3 [23.2 kB]
Get:175 http://172.17.4.1/private trixie-staging/main armhf libaec0 armhf 1.1.2-1 [21.3 kB]
Get:176 http://172.17.4.1/private trixie-staging/main armhf libsz2 armhf 1.1.2-1 [7700 B]
Get:177 http://172.17.4.1/private trixie-staging/main armhf libaec-dev armhf 1.1.2-1 [18.4 kB]
Get:178 http://172.17.4.1/private trixie-staging/main armhf libasan8 armhf 14-20240201-3+rpi1 [2545 kB]
Get:179 http://172.17.4.1/private trixie-staging/main armhf libsnappy1v5 armhf 1.1.10-1 [24.8 kB]
Get:180 http://172.17.4.1/private trixie-staging/main armhf libblosc1 armhf 1.21.5+ds-1 [36.9 kB]
Get:181 http://172.17.4.1/private trixie-staging/main armhf libcc1-0 armhf 14-20240201-3+rpi1 [31.6 kB]
Get:182 http://172.17.4.1/private trixie-staging/main armhf libcurl4-openssl-dev armhf 8.5.0-2+rpi1 [461 kB]
Get:183 http://172.17.4.1/private trixie-staging/main armhf libhdf5-103-1 armhf 1.10.10+repack-3 [1215 kB]
Get:184 http://172.17.4.1/private trixie-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.10+repack-3 [112 kB]
Get:185 http://172.17.4.1/private trixie-staging/main armhf libhdf5-fortran-102 armhf 1.10.10+repack-3 [77.3 kB]
Get:186 http://172.17.4.1/private trixie-staging/main armhf libhdf5-hl-100 armhf 1.10.10+repack-3 [59.9 kB]
Get:187 http://172.17.4.1/private trixie-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.10+repack-3 [34.1 kB]
Get:188 http://172.17.4.1/private trixie-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.10+repack-3 [20.5 kB]
Get:189 http://172.17.4.1/private trixie-staging/main armhf libssl-dev armhf 3.1.5-1 [2121 kB]
Get:190 http://172.17.4.1/private trixie-staging/main armhf libhdf5-dev armhf 1.10.10+repack-3 [2314 kB]
Get:191 http://172.17.4.1/private trixie-staging/main armhf libubsan1 armhf 14-20240201-3+rpi1 [1031 kB]
Get:192 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocgenerics all 0.48.1-2 [597 kB]
Get:193 http://172.17.4.1/private trixie-staging/main armhf r-cran-lattice armhf 0.22-5-1 [1393 kB]
Get:194 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrix armhf 1.6-5-1 [3703 kB]
Get:195 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrixstats armhf 1.2.0-1 [468 kB]
Get:196 http://172.17.4.1/private trixie-staging/main armhf r-bioc-matrixgenerics all 1.14.0-1 [407 kB]
Get:197 http://172.17.4.1/private trixie-staging/main armhf r-bioc-s4vectors armhf 0.40.2+dfsg-1 [2055 kB]
Get:198 http://172.17.4.1/private trixie-staging/main armhf r-bioc-iranges armhf 2.36.0-1 [2249 kB]
Get:199 http://172.17.4.1/private trixie-staging/main armhf r-cran-abind all 1.4-5-2 [64.6 kB]
Get:200 http://172.17.4.1/private trixie-staging/main armhf r-cran-crayon all 1.5.2-1 [165 kB]
Get:201 http://172.17.4.1/private trixie-staging/main armhf r-bioc-s4arrays armhf 1.2.0+dfsg-1 [511 kB]
Get:202 http://172.17.4.1/private trixie-staging/main armhf r-bioc-zlibbioc all 1.48.0+dfsg-1 [9344 B]
Get:203 http://172.17.4.1/private trixie-staging/main armhf r-bioc-xvector armhf 0.42.0-1 [620 kB]
Get:204 http://172.17.4.1/private trixie-staging/main armhf r-bioc-sparsearray armhf 1.2.4+dfsg-1 [1173 kB]
Get:205 http://172.17.4.1/private trixie-staging/main armhf r-bioc-delayedarray armhf 0.28.0+dfsg-1 [1792 kB]
Get:206 http://172.17.4.1/private trixie-staging/main armhf r-bioc-rhdf5lib armhf 1.24.2+dfsg-1 [103 kB]
Get:207 http://172.17.4.1/private trixie-staging/main armhf r-bioc-rhdf5filters armhf 1.14.1+dfsg-3 [134 kB]
Get:208 http://172.17.4.1/private trixie-staging/main armhf r-bioc-rhdf5 armhf 2.46.1+dfsg-1 [839 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up gcc-14-base:armhf (14-20240201-3+rpi1) ...
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Setting up libgcc-s1:armhf (14-20240201-3+rpi1) ...
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Setting up libstdc++6:armhf (14-20240201-3+rpi1) ...
Selecting previously unselected package libuchardet0:armhf.
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Unpacking man-db (2.12.0-3) ...
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Unpacking sensible-utils (0.0.22) ...
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Unpacking openssl (3.1.5-1) ...
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Unpacking ca-certificates (20240203) ...
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Unpacking file (1:5.45-2) ...
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Unpacking gettext-base (0.21-14) ...
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Moving old data out of the way
Unpacking ucf (3.0043+nmu1) ...
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Unpacking m4 (1.4.19-4) ...
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Unpacking autoconf (2.71-3) ...
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Unpacking autotools-dev (20220109.1) ...
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No schema files found: doing nothing.
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invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of restart.
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Setting up ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
146 added, 0 removed; done.
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
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Setting up libpaper1:armhf (1.1.29) ...
Creating config file /etc/papersize with new version
Setting up fontconfig (2.14.2-6) ...
Regenerating fonts cache... done.
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b2) ...
Setting up libpango-1.0-0:armhf (1.51.0+ds-4) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl:armhf (4.17-10+b1) ...
Setting up libpaper-utils (1.1.29) ...
Setting up man-db (2.12.0-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:13.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:armhf (1.18.0-1) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libcurl4-openssl-dev:armhf (8.5.0-2+rpi1) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libxt6:armhf (1:1.2.1-1.1) ...
Setting up libhdf5-103-1:armhf (1.10.10+repack-3) ...
Setting up xauth (1:1.1.2-1) ...
Setting up libhdf5-cpp-103-1:armhf (1.10.10+repack-3) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libpangoft2-1.0-0:armhf (1.51.0+ds-4) ...
Setting up libpangocairo-1.0-0:armhf (1.51.0+ds-4) ...
Setting up libhdf5-hl-100:armhf (1.10.10+repack-3) ...
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libtk8.6:armhf (8.6.13-2) ...
Setting up debhelper (13.13) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up libhdf5-hl-cpp-100:armhf (1.10.10+repack-3) ...
Setting up r-base-core (4.3.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.2-1) ...
Setting up libhdf5-fortran-102:armhf (1.10.10+repack-3) ...
Setting up r-cran-lattice (0.22-5-1) ...
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up libhdf5-hl-fortran-100:armhf (1.10.10+repack-3) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b2) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up r-bioc-biocgenerics (0.48.1-2) ...
Setting up r-cran-matrixstats (1.2.0-1) ...
Setting up r-base-dev (4.3.2-1) ...
Setting up r-bioc-matrixgenerics (1.14.0-1) ...
Setting up libmoose-perl:armhf (2.2207-1) ...
Setting up r-cran-abind (1.4-5-2) ...
Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
Setting up libhdf5-dev (1.10.10+repack-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up r-cran-matrix (1.6-5-1) ...
Setting up r-bioc-iranges (2.36.0-1) ...
Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Setting up r-bioc-rhdf5lib (1.24.2+dfsg-1) ...
Setting up r-bioc-rhdf5filters (1.14.1+dfsg-3) ...
Setting up r-bioc-xvector (0.42.0-1) ...
Setting up dh-r (20231212) ...
Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ...
Setting up r-bioc-rhdf5 (2.46.1+dfsg-1) ...
Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.37-15~deb13u1+rpi1) ...
Processing triggers for ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.47-v8+ #1 SMP PREEMPT Fri Sep 1 07:05:33 BST 2023 arm64 (aarch64)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.4+rpi1 g++-12_12.3.0-14+rpi1 g++-13_13.2.0-9+rpi1 gcc-12_12.3.0-14+rpi1 gcc-13_13.2.0-9+rpi1 libc6-dev_2.37-15~deb13u1+rpi1 libstdc++-12-dev_12.3.0-14+rpi1 libstdc++-13-dev_13.2.0-9+rpi1 libstdc++6_14-20240201-3+rpi1 linux-libc-dev_6.5.6-1+rpi1+b1
Package versions: adduser_3.137 apt_2.7.11 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.3-6 bsdutils_1:2.39.3-6 build-essential_12.10 bzip2_1.0.8-5+b2 ca-certificates_20240203 coreutils_9.4-3 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-14+rpi1 cpp-13_13.2.0-9+rpi1 dash_0.5.12-6 dctrl-tools_2.24-3 debconf_1.5.86 debhelper_13.13 debianutils_5.16 dh-autoreconf_20 dh-r_20231212 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dpkg_1.22.4+rpi1 dpkg-dev_1.22.4+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.33-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig_2.14.2-6 fontconfig-config_2.14.2-6 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-14+rpi1 g++-13_13.2.0-9+rpi1 gcc_4:13.2.0-1+rpi1 gcc-10-base_10.4.0-7+rpi1 gcc-12_12.3.0-14+rpi1 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zip_3.0-13 zlib1g_1:1.3.dfsg-3 zlib1g-dev_1:1.3.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: r-bioc-hdf5array
Binary: r-bioc-hdf5array
Architecture: any
Version: 1.30.1-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Steffen Moeller <moeller@debian.org>, Charles Plessy <plessy@debian.org>
Homepage: https://bioconductor.org/packages/HDF5Array/
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-hdf5array
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-hdf5array.git
Testsuite: autopkgtest-pkg-r
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-delayedarray (>= 0.27.2), r-bioc-rhdf5, r-cran-matrix, r-bioc-rhdf5filters, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-iranges, r-bioc-s4arrays, r-bioc-rhdf5lib, libhdf5-dev
Package-List:
r-bioc-hdf5array deb gnu-r optional arch=any
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xq9/m6DznIY=
=xvSn
-----END PGP SIGNATURE-----
gpgv: Signature made Tue Feb 20 13:31:09 2024 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-bioc-hdf5array_1.30.1-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-bioc-hdf5array in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-hdf5array_1.30.1.orig.tar.gz
dpkg-source: info: unpacking r-bioc-hdf5array_1.30.1-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_libhdf5.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=124
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-a5b324f6-cdd3-4195-bfa2-a3428e78ce05
SCHROOT_UID=114
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mRaspbian pi5 test autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package r-bioc-hdf5array
dpkg-buildpackage: info: source version 1.30.1-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-hdf5array/ -a -O--buildsystem=R
I: R Package: HDF5Array Version: 1.30.1
I: Building using R version 4.3.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Tue, 20 Feb 2024 14:26:16 +0100
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-hdf5array/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-hdf5array/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 20 Feb 2024 14:26:16 +0100'"
* installing *source* package ‘HDF5Array’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Raspbian 13.2.0-9+rpi1) 13.2.0’
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c H5File.c -o H5File.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c global_errmsg_buf.c -o global_errmsg_buf.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c H5DSetDescriptor.c -o H5DSetDescriptor.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c h5dimscales.c -o h5dimscales.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c uaselection.c -o uaselection.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c h5mread_helpers.c -o h5mread_helpers.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c h5mread_startscounts.c -o h5mread_startscounts.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ChunkIterator.c -o ChunkIterator.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c h5mread_index.c -o h5mread_index.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c h5mread_sparse.c -o h5mread_sparse.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c h5mread.c -o h5mread.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c h5summarize.c -o h5summarize.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c R_init_HDF5Array.c -o R_init_HDF5Array.o
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o HDF5Array.so S4Vectors_stubs.o H5File.o global_errmsg_buf.o H5DSetDescriptor.o h5dimscales.o uaselection.o h5mread_helpers.o h5mread_startscounts.o ChunkIterator.o h5mread_index.o h5mread_sparse.o h5mread.o h5summarize.o R_init_HDF5Array.o /usr/lib/R/site-library/Rhdf5lib/libs/Rhdf5lib.so -L/usr/lib/arm-linux-gnueabihf/hdf5/serial/ -lhdf5 -lhdf5_hl -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-hdf5array/usr/lib/R/site-library/00LOCK-r-bioc-hdf5array-1.30.1/00new/HDF5Array/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HDF5Array)
W: Ignoring specified R dependency: R (>= 3.4)
I: Using r-bioc-delayedarray for Depends:DelayedArray (>= 0.27.2)
I: Using r-bioc-rhdf5 for Depends:rhdf5 (>= 2.31.6)
I: Using r-bioc-biocparallel for Suggests:BiocParallel
I: Using r-bioc-genomicranges for Suggests:GenomicRanges
I: Using r-bioc-summarizedexperiment for Suggests:SummarizedExperiment (>= 1.15.1)
W: Cannot find a debian package for Suggests:h5vcData
I: Using r-bioc-experimenthub for Suggests:ExperimentHub
W: Cannot find a debian package for Suggests:TENxBrainData
W: Cannot find a debian package for Suggests:zellkonverter
I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures
I: Using r-cran-runit for Suggests:RUnit
I: Using r-bioc-singlecellexperiment for Suggests:SingleCellExperiment
I: Using r-bioc-delayedmatrixstats for Suggests:DelayedMatrixStats
I: Using r-bioc-genefilter for Suggests:genefilter
I: Using r-cran-matrix by changing version to for Imports:Matrix
I: Using r-bioc-rhdf5filters for Imports:rhdf5filters
I: Using r-bioc-biocgenerics for Imports:BiocGenerics (>= 0.31.5)
I: Using r-bioc-s4vectors for Imports:S4Vectors
I: Using r-bioc-iranges for Imports:IRanges
I: Using r-bioc-s4arrays for Imports:S4Arrays (>= 1.1.1)
I: Using r-bioc-s4vectors for LinkingTo:S4Vectors (>= 0.27.13)
I: Using r-bioc-rhdf5lib for LinkingTo:Rhdf5lib
I: BioConductor API version: r-api-bioc-3.18
I: Use r-bioc-hdf5array as Debian binary package for variables substitution
debian/rules execute_after_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
find debian -name test_H5ADMatrixSeed-class.R -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-hdf5array-dbgsym' in '../r-bioc-hdf5array-dbgsym_1.30.1-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-hdf5array' in '../r-bioc-hdf5array_1.30.1-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-bioc-hdf5array_1.30.1-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi5 test autobuilder <root@raspbian.org> -O../r-bioc-hdf5array_1.30.1-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-02-23T06:18:20Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-hdf5array_1.30.1-1_armhf.changes:
----------------------------------------
Format: 1.8
Date: Tue, 20 Feb 2024 14:26:16 +0100
Source: r-bioc-hdf5array
Binary: r-bioc-hdf5array r-bioc-hdf5array-dbgsym
Architecture: armhf
Version: 1.30.1-1
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian pi5 test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-hdf5array - HDF5 backend for DelayedArray objects
Changes:
r-bioc-hdf5array (1.30.1-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* dh-update-R to update Build-Depends (routine-update)
Set upstream metadata fields: Archive.
Checksums-Sha1:
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e2e77b13141f897107b3af9f6c6876f5b0fbd091 8755212 r-bioc-hdf5array_1.30.1-1_armhf.deb
Checksums-Sha256:
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Files:
15d7c53383b3f289b85c34ed039f9aa6 47984 debug optional r-bioc-hdf5array-dbgsym_1.30.1-1_armhf.deb
747ec49c043c9db581898344066100a1 11096 gnu-r optional r-bioc-hdf5array_1.30.1-1_armhf.buildinfo
378567828c08f924fdeb7d0bcf4a5068 8755212 gnu-r optional r-bioc-hdf5array_1.30.1-1_armhf.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: r-bioc-hdf5array
Binary: r-bioc-hdf5array r-bioc-hdf5array-dbgsym
Architecture: armhf
Version: 1.30.1-1
Checksums-Md5:
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Checksums-Sha1:
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Checksums-Sha256:
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Fri, 23 Feb 2024 06:18:19 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
autoconf (= 2.71-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-14),
autotools-dev (= 20220109.1),
base-files (= 13+rpi1),
base-passwd (= 3.6.3),
bash (= 5.2.21-2),
binutils (= 2.41-6+rpi1),
binutils-arm-linux-gnueabihf (= 2.41-6+rpi1),
binutils-common (= 2.41-6+rpi1),
bsdextrautils (= 2.39.3-6),
bsdutils (= 1:2.39.3-6),
build-essential (= 12.10),
bzip2 (= 1.0.8-5+b2),
ca-certificates (= 20240203),
coreutils (= 9.4-3),
cpp (= 4:13.2.0-1+rpi1),
cpp-12 (= 12.3.0-14+rpi1),
cpp-13 (= 13.2.0-9+rpi1),
dash (= 0.5.12-6),
dctrl-tools (= 2.24-3),
debconf (= 1.5.86),
debhelper (= 13.13),
debianutils (= 5.16),
dh-autoreconf (= 20),
dh-r (= 20231212),
dh-strip-nondeterminism (= 1.13.1-1),
diffutils (= 1:3.10-1),
dpkg (= 1.22.4+rpi1),
dpkg-dev (= 1.22.4+rpi1),
dwz (= 0.15-1),
file (= 1:5.45-2),
findutils (= 4.9.0-5),
fontconfig (= 2.14.2-6),
fontconfig-config (= 2.14.2-6),
fonts-dejavu-core (= 2.37-8),
fonts-dejavu-mono (= 2.37-8),
g++ (= 4:13.2.0-1+rpi1),
g++-13 (= 13.2.0-9+rpi1),
gcc (= 4:13.2.0-1+rpi1),
gcc-12 (= 12.3.0-14+rpi1),
gcc-12-base (= 12.3.0-14+rpi1),
gcc-13 (= 13.2.0-9+rpi1),
gcc-13-base (= 13.2.0-9+rpi1),
gcc-14-base (= 14-20240201-3+rpi1),
gettext (= 0.21-14),
gettext-base (= 0.21-14),
gfortran (= 4:13.2.0-1+rpi1),
gfortran-13 (= 13.2.0-9+rpi1),
grep (= 3.11-4),
groff-base (= 1.23.0-3),
gzip (= 1.12-1),
hdf5-helpers (= 1.10.10+repack-3),
hostname (= 3.23+nmu2),
icu-devtools (= 72.1-4),
init-system-helpers (= 1.66),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.2-1),
libaec-dev (= 1.1.2-1),
libaec0 (= 1.1.2-1),
libalgorithm-c3-perl (= 0.11-2),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 14-20240201-3+rpi1),
libatomic1 (= 14-20240201-3+rpi1),
libattr1 (= 1:2.5.2-1),
libaudit-common (= 1:3.1.2-2),
libaudit1 (= 1:3.1.2-2),
libb-hooks-endofscope-perl (= 0.26-1),
libb-hooks-op-check-perl (= 0.22-2+b2),
libbinutils (= 2.41-6+rpi1),
libblas-dev (= 3.12.0-3),
libblas3 (= 3.12.0-3),
libblkid1 (= 2.39.3-6),
libblosc1 (= 1.21.5+ds-1),
libbrotli1 (= 1.1.0-2),
libbsd0 (= 0.11.8-1),
libbz2-1.0 (= 1.0.8-5+b2),
libbz2-dev (= 1.0.8-5+b2),
libc-bin (= 2.37-15~deb13u1+rpi1),
libc-dev-bin (= 2.37-15~deb13u1+rpi1),
libc6 (= 2.37-15~deb13u1+rpi1),
libc6-dev (= 2.37-15~deb13u1+rpi1),
libcairo2 (= 1.18.0-1),
libcap-ng0 (= 0.8.4-2),
libcap2 (= 1:2.66-5),
libcc1-0 (= 14-20240201-3+rpi1),
libclass-c3-perl (= 0.35-2),
libclass-load-perl (= 0.25-2),
libclass-load-xs-perl (= 0.10-2+b2),
libclone-perl (= 0.46-1+b1),
libcom-err2 (= 1.47.0-2),
libcrypt-dev (= 1:4.4.36-4),
libcrypt1 (= 1:4.4.36-4),
libctf-nobfd0 (= 2.41-6+rpi1),
libctf0 (= 2.41-6+rpi1),
libcurl3-gnutls (= 8.5.0-2+rpi1),
libcurl4 (= 8.5.0-2+rpi1),
libcurl4-openssl-dev (= 8.5.0-2+rpi1),
libdata-optlist-perl (= 0.114-1),
libdatrie1 (= 0.2.13-3),
libdb5.3 (= 5.3.28+dfsg2-4),
libdebconfclient0 (= 0.271),
libdebhelper-perl (= 13.13),
libdeflate0 (= 1.19-1),
libdevel-callchecker-perl (= 0.008-2+b1),
libdevel-globaldestruction-perl (= 0.14-4),
libdevel-overloadinfo-perl (= 0.007-1),
libdevel-stacktrace-perl (= 2.0500-1),
libdist-checkconflicts-perl (= 0.11-2),
libdpkg-perl (= 1.22.4+rpi1),
libdynaloader-functions-perl (= 0.003-3),
libelf1 (= 0.188-2.1+rpi1),
libencode-locale-perl (= 1.05-3),
libeval-closure-perl (= 0.14-3),
libexpat1 (= 2.5.0-2),
libffi8 (= 3.4.4-2),
libfile-find-rule-perl (= 0.34-3),
libfile-stripnondeterminism-perl (= 1.13.1-1),
libfile-which-perl (= 1.27-2),
libfontconfig1 (= 2.14.2-6),
libfreetype6 (= 2.13.2+dfsg-1),
libfribidi0 (= 1.0.13-3),
libgcc-12-dev (= 12.3.0-14+rpi1),
libgcc-13-dev (= 13.2.0-9+rpi1),
libgcc-s1 (= 14-20240201-3+rpi1),
libgcrypt20 (= 1.10.3-2),
libgdbm-compat4 (= 1.23-5),
libgdbm6 (= 1.23-5),
libgfortran-13-dev (= 13.2.0-9+rpi1),
libgfortran5 (= 14-20240201-3+rpi1),
libglib2.0-0 (= 2.78.4-1),
libgmp10 (= 2:6.3.0+dfsg-2),
libgnutls30 (= 3.8.3-1),
libgomp1 (= 14-20240201-3+rpi1),
libgpg-error0 (= 1.47-3),
libgraphite2-3 (= 1.3.14-2),
libgssapi-krb5-2 (= 1.20.1-5),
libharfbuzz0b (= 8.3.0-2),
libhdf5-103-1 (= 1.10.10+repack-3),
libhdf5-cpp-103-1 (= 1.10.10+repack-3),
libhdf5-dev (= 1.10.10+repack-3),
libhdf5-fortran-102 (= 1.10.10+repack-3),
libhdf5-hl-100 (= 1.10.10+repack-3),
libhdf5-hl-cpp-100 (= 1.10.10+repack-3),
libhdf5-hl-fortran-100 (= 1.10.10+repack-3),
libhogweed6 (= 3.9.1-2),
libhttp-date-perl (= 6.06-1),
libhttp-message-perl (= 6.45-1),
libice6 (= 2:1.0.10-1),
libicu-dev (= 72.1-4),
libicu72 (= 72.1-4),
libidn2-0 (= 2.3.7-2),
libio-html-perl (= 1.004-3),
libisl23 (= 0.26-3),
libjansson4 (= 2.14-2),
libjbig0 (= 2.1-6.1),
libjpeg-dev (= 1:2.1.5-2),
libjpeg62-turbo (= 1:2.1.5-2),
libjpeg62-turbo-dev (= 1:2.1.5-2),
libk5crypto3 (= 1.20.1-5),
libkeyutils1 (= 1.6.3-3),
libkrb5-3 (= 1.20.1-5),
libkrb5support0 (= 1.20.1-5),
liblapack-dev (= 3.12.0-3),
liblapack3 (= 3.12.0-3),
libldap-2.5-0 (= 2.5.13+dfsg-5+rpi1+b1),
liblerc4 (= 4.0.0+ds-4),
liblwp-mediatypes-perl (= 6.04-2),
liblz4-1 (= 1.9.4-1+rpi1+b1),
liblzma-dev (= 5.4.5-0.3),
liblzma5 (= 5.4.5-0.3),
libmagic-mgc (= 1:5.45-2),
libmagic1 (= 1:5.45-2),
libmd0 (= 1.1.0-2),
libmodule-implementation-perl (= 0.09-2),
libmodule-runtime-conflicts-perl (= 0.003-2),
libmodule-runtime-perl (= 0.016-2),
libmoose-perl (= 2.2207-1),
libmount1 (= 2.39.3-6),
libmpc3 (= 1.3.1-1),
libmpfr6 (= 4.2.1-1),
libmro-compat-perl (= 0.15-2),
libnamespace-clean-perl (= 0.27-2),
libncurses-dev (= 6.4+20240113-1),
libncurses6 (= 6.4+20240113-1),
libncursesw6 (= 6.4+20240113-1),
libnettle8 (= 3.9.1-2),
libnghttp2-14 (= 1.59.0-1),
libnsl-dev (= 1.3.0-3),
libnsl2 (= 1.3.0-3),
libnumber-compare-perl (= 0.03-3),
libp11-kit0 (= 0.25.3-4),
libpackage-deprecationmanager-perl (= 0.18-1),
libpackage-stash-perl (= 0.40-1),
libpackage-stash-xs-perl (= 0.30-1+b2),
libpam-modules (= 1.5.2-9.1),
libpam-modules-bin (= 1.5.2-9.1),
libpam-runtime (= 1.5.2-9.1),
libpam0g (= 1.5.2-9.1),
libpango-1.0-0 (= 1.51.0+ds-4),
libpangocairo-1.0-0 (= 1.51.0+ds-4),
libpangoft2-1.0-0 (= 1.51.0+ds-4),
libpaper-utils (= 1.1.29),
libpaper1 (= 1.1.29),
libparams-classify-perl (= 0.015-2+b2),
libparams-util-perl (= 1.102-2+b2),
libpcre2-16-0 (= 10.42-4),
libpcre2-32-0 (= 10.42-4),
libpcre2-8-0 (= 10.42-4),
libpcre2-dev (= 10.42-4),
libpcre2-posix3 (= 10.42-4),
libperl5.38 (= 5.38.2-3),
libpipeline1 (= 1.5.7-1),
libpixman-1-0 (= 0.42.2-1),
libpkgconf3 (= 1.8.1-1),
libpng-dev (= 1.6.42-1),
libpng16-16 (= 1.6.42-1),
libpsl5 (= 0.21.2-1+b1),
libreadline-dev (= 8.2-3),
libreadline8 (= 8.2-3),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
libsasl2-2 (= 2.1.28+dfsg1-4),
libsasl2-modules-db (= 2.1.28+dfsg1-4),
libseccomp2 (= 2.5.5-1+rpi1),
libselinux1 (= 3.5-2),
libsframe1 (= 2.41-6+rpi1),
libsharpyuv0 (= 1.3.2-0.4),
libsm6 (= 2:1.2.3-1),
libsmartcols1 (= 2.39.3-6),
libsnappy1v5 (= 1.1.10-1),
libssh2-1 (= 1.11.0-4),
libssl-dev (= 3.1.5-1),
libssl3 (= 3.1.5-1),
libstdc++-13-dev (= 13.2.0-9+rpi1),
libstdc++6 (= 14-20240201-3+rpi1),
libsub-exporter-perl (= 0.990-1),
libsub-exporter-progressive-perl (= 0.001013-3),
libsub-identify-perl (= 0.14-3+b1),
libsub-install-perl (= 0.929-1),
libsub-name-perl (= 0.27-1+b1),
libsub-override-perl (= 0.10-1),
libswitch-perl (= 2.17-3),
libsystemd0 (= 255.3-1+rpi1),
libsz2 (= 1.1.2-1),
libtasn1-6 (= 4.19.0-3),
libtcl8.6 (= 8.6.13+dfsg-2+b1),
libtext-glob-perl (= 0.11-3),
libthai-data (= 0.1.29-2),
libthai0 (= 0.1.29-2),
libtiff6 (= 4.5.1+git230720-4),
libtimedate-perl (= 2.3300-2),
libtinfo6 (= 6.4+20240113-1),
libtirpc-common (= 1.3.4+ds-1),
libtirpc-dev (= 1.3.4+ds-1),
libtirpc3 (= 1.3.4+ds-1),
libtk8.6 (= 8.6.13-2),
libtool (= 2.4.7-7),
libtry-tiny-perl (= 0.31-2),
libubsan1 (= 14-20240201-3+rpi1),
libuchardet0 (= 0.0.8-1),
libudev1 (= 255.3-1+rpi1),
libunistring5 (= 1.1-2),
liburi-perl (= 5.27-1),
libuuid1 (= 2.39.3-6),
libvariable-magic-perl (= 0.63-1+b2),
libwebp7 (= 1.3.2-0.4),
libwww-curl-perl (= 4.17-10+b1),
libwww-curl-simple-perl (= 0.100191-3),
libx11-6 (= 2:1.8.7-1),
libx11-data (= 2:1.8.7-1),
libxau6 (= 1:1.0.9-1),
libxcb-render0 (= 1.15-1),
libxcb-shm0 (= 1.15-1),
libxcb1 (= 1.15-1),
libxdmcp6 (= 1:1.1.2-3),
libxext6 (= 2:1.3.4-1),
libxft2 (= 2.3.6-1),
libxml2 (= 2.9.14+dfsg-1.3),
libxmuu1 (= 2:1.1.3-3),
libxrender1 (= 1:0.9.10-1.1),
libxss1 (= 1:1.2.3-1),
libxt6 (= 1:1.2.1-1.1),
libzstd1 (= 1.5.5+dfsg2-2),
linux-libc-dev (= 6.5.6-1+rpi1+b1),
login (= 1:4.13+dfsg1-3),
lsb-base (= 11.6+rpi1),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.12.0-3),
mawk (= 1.3.4.20240123-1),
ncurses-base (= 6.4+20240113-1),
ncurses-bin (= 6.4+20240113-1),
openssl (= 3.1.5-1),
patch (= 2.7.6-7),
perl (= 5.38.2-3),
perl-base (= 5.38.2-3),
perl-modules-5.38 (= 5.38.2-3),
pkg-config (= 1.8.1-1),
pkgconf (= 1.8.1-1),
pkgconf-bin (= 1.8.1-1),
po-debconf (= 1.0.21+nmu1),
r-base-core (= 4.3.2-1),
r-base-dev (= 4.3.2-1),
r-bioc-biocgenerics (= 0.48.1-2),
r-bioc-delayedarray (= 0.28.0+dfsg-1),
r-bioc-iranges (= 2.36.0-1),
r-bioc-matrixgenerics (= 1.14.0-1),
r-bioc-rhdf5 (= 2.46.1+dfsg-1),
r-bioc-rhdf5filters (= 1.14.1+dfsg-3),
r-bioc-rhdf5lib (= 1.24.2+dfsg-1),
r-bioc-s4arrays (= 1.2.0+dfsg-1),
r-bioc-s4vectors (= 0.40.2+dfsg-1),
r-bioc-sparsearray (= 1.2.4+dfsg-1),
r-bioc-xvector (= 0.42.0-1),
r-bioc-zlibbioc (= 1.48.0+dfsg-1),
r-cran-abind (= 1.4-5-2),
r-cran-crayon (= 1.5.2-1),
r-cran-lattice (= 0.22-5-1),
r-cran-matrix (= 1.6-5-1),
r-cran-matrixstats (= 1.2.0-1),
readline-common (= 8.2-3),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-2),
sensible-utils (= 0.0.22),
sysvinit-utils (= 3.08-6),
tar (= 1.35+dfsg-3),
tzdata (= 2024a-1),
ucf (= 3.0043+nmu1),
unzip (= 6.0-28),
usr-is-merged (= 39),
usrmerge (= 39),
util-linux (= 2.39.3-6),
x11-common (= 1:7.7+23),
xauth (= 1:1.1.2-1),
xdg-utils (= 1.1.3-4.1),
xz-utils (= 5.4.5-0.3),
zip (= 3.0-13),
zlib1g (= 1:1.3.dfsg-3),
zlib1g-dev (= 1:1.3.dfsg-3)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
LC_COLLATE="C.UTF-8"
SOURCE_DATE_EPOCH="1708435576"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-hdf5array-dbgsym_1.30.1-1_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 47984 bytes: control archive=540 bytes.
401 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-hdf5array-dbgsym
Source: r-bioc-hdf5array
Version: 1.30.1-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 78
Depends: r-bioc-hdf5array (= 1.30.1-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-hdf5array
Build-Ids: 70658b27f2d5c4bf6826bc5ea75343884456e3a0
drwxr-xr-x root/root 0 2024-02-20 13:26 ./
drwxr-xr-x root/root 0 2024-02-20 13:26 ./usr/
drwxr-xr-x root/root 0 2024-02-20 13:26 ./usr/lib/
drwxr-xr-x root/root 0 2024-02-20 13:26 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-02-20 13:26 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-02-20 13:26 ./usr/lib/debug/.build-id/70/
-rw-r--r-- root/root 69572 2024-02-20 13:26 ./usr/lib/debug/.build-id/70/658b27f2d5c4bf6826bc5ea75343884456e3a0.debug
drwxr-xr-x root/root 0 2024-02-20 13:26 ./usr/share/
drwxr-xr-x root/root 0 2024-02-20 13:26 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-02-20 13:26 ./usr/share/doc/r-bioc-hdf5array-dbgsym -> r-bioc-hdf5array
r-bioc-hdf5array_1.30.1-1_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 8755212 bytes: control archive=1848 bytes.
1390 bytes, 20 lines control
2533 bytes, 30 lines md5sums
Package: r-bioc-hdf5array
Version: 1.30.1-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 9027
Depends: r-api-4.0, r-api-bioc-3.18, r-bioc-delayedarray (>= 0.27.2), r-bioc-rhdf5 (>= 2.31.6), r-cran-matrix, r-bioc-rhdf5filters, r-bioc-biocgenerics (>= 0.31.5), r-bioc-s4vectors (>= 0.27.13), r-bioc-iranges, r-bioc-s4arrays (>= 1.1.1), r-bioc-rhdf5lib, libc6 (>= 2.4), libhdf5-103-1, libhdf5-hl-100
Suggests: r-bioc-biocparallel, r-bioc-genomicranges, r-bioc-summarizedexperiment (>= 1.15.1), r-bioc-experimenthub, r-bioc-genomicfeatures, r-cran-runit, r-bioc-singlecellexperiment, r-bioc-delayedmatrixstats, r-bioc-genefilter
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/HDF5Array/
Description: HDF5 backend for DelayedArray objects
Implements the HDF5Array and TENxMatrix classes, 2 convenient
and memory-efficient array-like containers for on-disk representation
of HDF5 datasets. HDF5Array is for datasets that use the conventional
(i.e. dense) HDF5 representation. TENxMatrix is for datasets that
use the HDF5-based sparse matrix representation from 10x Genomics
(e.g. the 1.3 Million Brain Cell Dataset). Both containers being
DelayedArray extensions, they support all operations supported by
DelayedArray objects. These operations can be either delayed or
block-processed.
drwxr-xr-x root/root 0 2024-02-20 13:26 ./
drwxr-xr-x root/root 0 2024-02-20 13:26 ./usr/
drwxr-xr-x root/root 0 2024-02-20 13:26 ./usr/lib/
drwxr-xr-x root/root 0 2024-02-20 13:26 ./usr/lib/R/
drwxr-xr-x root/root 0 2024-02-20 13:26 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/
-rw-r--r-- root/root 2450 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/DESCRIPTION
-rw-r--r-- root/root 1472 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/INDEX
drwxr-xr-x root/root 0 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/Meta/
-rw-r--r-- root/root 2222 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/Meta/Rd.rds
-rw-r--r-- root/root 123 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/Meta/features.rds
-rw-r--r-- root/root 2328 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/Meta/hsearch.rds
-rw-r--r-- root/root 1784 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/Meta/links.rds
-rw-r--r-- root/root 1099 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/Meta/nsInfo.rds
-rw-r--r-- root/root 1913 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/Meta/package.rds
-rw-r--r-- root/root 4436 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/NAMESPACE
-rw-r--r-- root/root 6652 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/NEWS
drwxr-xr-x root/root 0 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/R/
-rw-r--r-- root/root 1058 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/R/HDF5Array
-rw-r--r-- root/root 781441 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/R/HDF5Array.rdb
-rw-r--r-- root/root 5671 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/R/HDF5Array.rdx
drwxr-xr-x root/root 0 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/extdata/
-rw-r--r-- root/root 8042720 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/extdata/toy.h5
drwxr-xr-x root/root 0 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/help/
-rw-r--r-- root/root 10051 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/help/AnIndex
-rw-r--r-- root/root 124179 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/help/HDF5Array.rdb
-rw-r--r-- root/root 651 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/help/HDF5Array.rdx
-rw-r--r-- root/root 1873 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/help/aliases.rds
-rw-r--r-- root/root 334 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/help/paths.rds
drwxr-xr-x root/root 0 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/html/
-rw-r--r-- root/root 27860 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/html/00Index.html
-rw-r--r-- root/root 1844 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/html/R.css
drwxr-xr-x root/root 0 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/libs/
-rw-r--r-- root/root 137532 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/libs/HDF5Array.so
drwxr-xr-x root/root 0 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/unitTests/
-rw-r--r-- root/root 0 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/unitTests/test_HDF5Array-class.R
-rw-r--r-- root/root 4440 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/unitTests/test_h5dimscales.R
-rw-r--r-- root/root 15059 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/unitTests/test_h5mread.R
-rw-r--r-- root/root 10101 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/unitTests/test_h5mread_from_reshaped.R
-rw-r--r-- root/root 2028 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/unitTests/test_h5utils.R
-rw-r--r-- root/root 7788 2024-02-20 13:26 ./usr/lib/R/site-library/HDF5Array/unitTests/test_uaselection.R
drwxr-xr-x root/root 0 2024-02-20 13:26 ./usr/share/
drwxr-xr-x root/root 0 2024-02-20 13:26 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-02-20 13:26 ./usr/share/doc/r-bioc-hdf5array/
-rw-r--r-- root/root 1026 2024-02-20 13:26 ./usr/share/doc/r-bioc-hdf5array/changelog.Debian.gz
-rw-r--r-- root/root 9625 2024-02-20 13:26 ./usr/share/doc/r-bioc-hdf5array/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 26460
Build-Time: 40
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 106
Job: r-bioc-hdf5array_1.30.1-1
Machine Architecture: arm64
Package: r-bioc-hdf5array
Package-Time: 156
Source-Version: 1.30.1-1
Space: 26460
Status: successful
Version: 1.30.1-1
--------------------------------------------------------------------------------
Finished at 2024-02-23T06:18:20Z
Build needed 00:02:36, 26460k disk space