Build log for r-bioc-hdf5array (1.26.0-1) on armhf

r-bioc-hdf5array → 1.26.0-1 → armhf → 2022-12-06 06:11:53

sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019

+==============================================================================+
| r-bioc-hdf5array 1.26.0-1 (armhf)            Tue, 06 Dec 2022 05:48:05 +0000 |
+==============================================================================+

Package: r-bioc-hdf5array
Version: 1.26.0-1
Source Version: 1.26.0-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-b7df5111-0774-42c5-9c2d-c05856fe8a75' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-hdf5array-8rDGp1/resolver-y2ryUm' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.5 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.3 MB]
Fetched 27.8 MB in 14s (1935 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'r-bioc-hdf5array' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-hdf5array.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-hdf5array.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 8105 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main r-bioc-hdf5array 1.26.0-1 (dsc) [2268 B]
Get:2 http://172.17.4.1/private bookworm-staging/main r-bioc-hdf5array 1.26.0-1 (tar) [8097 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main r-bioc-hdf5array 1.26.0-1 (diff) [5948 B]
Fetched 8105 kB in 1s (6435 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-hdf5array-8rDGp1/r-bioc-hdf5array-1.26.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-hdf5array-8rDGp1' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-delayedarray (>= 0.15.16), r-bioc-rhdf5, r-cran-matrix, r-bioc-rhdf5filters, r-bioc-biocgenerics (>= 0.31.5), r-bioc-s4vectors, r-bioc-iranges, r-bioc-rhdf5lib, libhdf5-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-delayedarray (>= 0.15.16), r-bioc-rhdf5, r-cran-matrix, r-bioc-rhdf5filters, r-bioc-biocgenerics (>= 0.31.5), r-bioc-s4vectors, r-bioc-iranges, r-bioc-rhdf5lib, libhdf5-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [459 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [546 B]
Fetched 1962 B in 0s (50.4 kB/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libpam-cap libperl5.34 perl-modules-5.34
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils bsdutils
  ca-certificates cpp-12 dctrl-tools debhelper dh-autoreconf dh-r
  dh-strip-nondeterminism dwz file fontconfig fontconfig-config
  fonts-dejavu-core g++-12 gcc-12 gcc-12-base gettext gettext-base gfortran
  gfortran-12 groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev
  libaec0 libalgorithm-c3-perl libarchive-zip-perl libasan8 libatomic1
  libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3
  libblkid1 libblosc1 libbrotli1 libbsd0 libbz2-dev libcairo2 libcc1-0
  libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl
  libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdata-optlist-perl
  libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
  libdevel-globaldestruction-perl libdevel-overloadinfo-perl
  libdevel-stacktrace-perl libdist-checkconflicts-perl
  libdynaloader-functions-perl libelf1 libencode-locale-perl
  libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
  libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-12-dev
  libgcc-s1 libgfortran-12-dev libgfortran5 libglib2.0-0 libgomp1
  libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev
  libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100
  libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72
  libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
  liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl liblzma-dev
  liblzma5 libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl
  libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
  libmount1 libmro-compat-perl libnamespace-clean-perl libncurses-dev
  libncurses5-dev libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
  libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
  libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
  libpcre2-32-0 libpcre2-8-0 libpcre2-dev libpcre2-posix3 libpcre3-dev
  libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev
  libpng16-16 libpsl5 libreadline-dev libreadline8 libregexp-ipv6-perl
  librtmp1 libsm6 libsmartcols1 libsnappy1v5 libssh2-1 libssl-dev libssl3
  libstdc++-12-dev libstdc++6 libsub-exporter-perl
  libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
  libsub-name-perl libsub-override-perl libswitch-perl libsz2 libtcl8.6
  libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool
  libtry-tiny-perl libubsan1 libuchardet0 liburi-perl libuuid1
  libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl
  libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
  libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mount
  openssl pkg-config pkgconf pkgconf-bin po-debconf r-base-core r-base-dev
  r-bioc-biocgenerics r-bioc-delayedarray r-bioc-iranges r-bioc-matrixgenerics
  r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4vectors
  r-cran-lattice r-cran-matrix r-cran-matrixstats readline-common ucf unzip
  util-linux util-linux-extra x11-common xauth xdg-utils xz-utils zip
  zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc gcc-12-locales cpp-12-doc
  debtags dh-make postgresql-client-common gcc-12-doc gettext-doc
  libasprintf-dev libgettextpo-dev gfortran-doc gfortran-12-doc
  libcoarrays-dev groff liblapack-doc libcurl4-doc libidn11-dev libkrb5-dev
  libldap2-dev librtmp-dev libssh2-1-dev low-memory-monitor libhdf5-doc
  icu-doc liblzma-doc cryptsetup-bin ncurses-doc libscalar-number-perl
  readline-doc libssl-doc libstdc++-12-doc tcl8.6 tk8.6 libtool-doc gcj-jdk
  libbusiness-isbn-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less
  www-browser nfs-common libmail-box-perl elpa-ess r-doc-info | r-doc-pdf
  r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic
  texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
  texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase
  r-bioc-genomicranges r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi
  r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-runit r-bioc-biocparallel
  r-bioc-hdf5array r-bioc-genefilter r-bioc-summarizedexperiment r-cran-lobstr
  r-bioc-delayedmatrixstats r-cran-knitr r-cran-rmarkdown r-bioc-biocstyle
  r-bioc-xvector r-bioc-genomicalignments r-bioc-genomicfeatures
  r-bioc-sparsematrixstats r-cran-testthat r-cran-bit64 r-cran-dplyr
  r-cran-ggplot2 r-cran-mockery r-cran-tinytest r-bioc-shortread r-bioc-graph
  r-cran-data.table r-cran-base64enc r-cran-markdown r-cran-r.devices
  r-cran-r.rsp dosfstools kbd util-linux-locales
Recommended packages:
  devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
  libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
  libglib2.0-data shared-mime-info xdg-user-dirs libdevel-partialdump-perl
  libgpm2 libpng-tools publicsuffix libltdl-dev uuid-runtime
  libmail-sendmail-perl r-recommended r-doc-html r-cran-knitr r-cran-rmarkdown
  r-bioc-biocstyle r-cran-runit libfile-mimeinfo-perl libnet-dbus-perl
  libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
  dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
  fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
  gfortran-12 groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev
  libaec0 libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libblas-dev libblas3 libblosc1 libbrotli1 libbsd0
  libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
  libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
  libcurl4-openssl-dev libdata-optlist-perl libdatrie1 libdebhelper-perl
  libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
  libdevel-overloadinfo-perl libdevel-stacktrace-perl
  libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
  libencode-locale-perl libeval-closure-perl libexpat1
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0
  libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev
  libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100
  libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72
  libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
  liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl liblzma-dev
  libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl
  libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
  libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
  libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
  libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
  libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
  libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3
  libpcrecpp0v5 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16
  libpsl5 libreadline-dev libregexp-ipv6-perl librtmp1 libsm6 libsnappy1v5
  libssh2-1 libssl-dev libsub-exporter-perl libsub-exporter-progressive-perl
  libsub-identify-perl libsub-install-perl libsub-name-perl
  libsub-override-perl libswitch-perl libsz2 libtcl8.6 libthai-data libthai0
  libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0
  liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
  libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
  libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
  libxss1 libxt6 m4 man-db openssl pkg-config pkgconf pkgconf-bin po-debconf
  r-base-core r-base-dev r-bioc-biocgenerics r-bioc-delayedarray
  r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters
  r-bioc-rhdf5lib r-bioc-s4vectors r-cran-lattice r-cran-matrix
  r-cran-matrixstats sbuild-build-depends-main-dummy ucf unzip x11-common
  xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
  bsdutils cpp-12 g++-12 gcc-12 gcc-12-base libasan8 libatomic1 libblkid1
  libcc1-0 libgcc-12-dev libgcc-s1 libgomp1 liblzma5 libmount1 libpcre2-8-0
  libreadline8 libsmartcols1 libssl3 libstdc++-12-dev libstdc++6 libubsan1
  libuuid1 mount readline-common util-linux util-linux-extra xz-utils
27 upgraded, 198 newly installed, 0 to remove and 53 not upgraded.
Need to get 148 MB of archives.
After this operation, 317 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [972 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf bsdutils armhf 1:2.38.1-4 [83.9 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libsmartcols1 armhf 2.38.1-4 [91.6 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf util-linux-extra armhf 2.38.1-4 [98.1 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf util-linux armhf 2.38.1-4 [1062 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf mount armhf 2.38.1-4 [126 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf readline-common all 8.2-1.2 [68.5 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 12.2.0-9+rpi1 [32.2 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 12.2.0-9+rpi1 [95.4 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 12.2.0-9+rpi1 [8224 B]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libasan8 armhf 12.2.0-9+rpi1 [2089 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 12.2.0-9+rpi1 [861 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12.2.0-9+rpi1 [37.2 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 12.2.0-9+rpi1 [504 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf g++-12 armhf 12.2.0-9+rpi1 [7913 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-12-dev armhf 12.2.0-9+rpi1 [2025 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libgcc-12-dev armhf 12.2.0-9+rpi1 [725 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf gcc-12 armhf 12.2.0-9+rpi1 [14.2 MB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf cpp-12 armhf 12.2.0-9+rpi1 [7156 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 12.2.0-9+rpi1 [36.1 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libblkid1 armhf 2.38.1-4 [131 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf liblzma5 armhf 5.2.8-0.0 [175 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libmount1 armhf 2.38.1-4 [144 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-8-0 armhf 10.40-2 [222 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libreadline8 armhf 8.2-1.2 [142 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libuuid1 armhf 2.38.1-4 [27.1 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-4 [78.8 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.1-1 [1341 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libssl3 armhf 3.0.7-1 [1614 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.7-1 [1349 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-10 [156 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf xz-utils armhf 5.2.8-0.0 [333 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-10 [495 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.1 [80.8 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-2 [19.4 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-2 [8556 B]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14+20220924-2 [93.1 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1 [570 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-10 [1203 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.1 [941 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf unzip armhf 6.0-27 [152 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-2 [109 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.38-2 [273 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [352 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config armhf 2.13.1-4.5 [281 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.5 [330 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-1 [112 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.8.1-2 [308 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.8.1-2 [704 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-6 [496 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.50.0-1 [65.0 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.86.0-2 [322 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.74.1-2 [1214 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-9+rpi1 [238 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-2 [1587 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.5 [416 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 5.2.0-2+b1 [1832 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.50.10+ds-1 [214 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.50.10+ds-1 [68.6 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.50.10+ds-1 [58.3 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-1 [906 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-2 [133 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2+b1 [237 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-6 [278 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.13-1 [680 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.1-1 [159 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf r-base-core armhf 4.2.2.20221110-1 [25.6 MB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-12-dev armhf 12.2.0-9+rpi1 [285 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf gfortran-12 armhf 12.2.0-9+rpi1 [7509 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf gfortran armhf 4:12.2.0-1+rpi1 [1432 B]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.1-2 [114 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.1-2 [2847 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3+20220423-2 [79.6 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libncurses-dev armhf 6.3+20220423-2 [289 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.3+20220423-2 [940 B]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libreadline-dev armhf 8.2-1.2 [122 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.2-1 [261 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.2-1 [74.7 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.40-2 [208 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.40-2 [199 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-posix3 armhf 10.40-2 [53.2 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.40-2 [644 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-14 [239 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-14 [232 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-14 [150 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-14 [569 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4.1 [183 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.38-2 [352 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.8-0.0 [232 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 72.1-3 [175 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 72.1-3 [9959 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf xauth armhf 1:1.1.1-1 [36.9 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libpkgconf3 armhf 1.8.0-11 [30.8 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf pkgconf-bin armhf 1.8.0-11 [27.6 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf pkgconf armhf 1.8.0-11 [25.6 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 1.8.0-11 [13.4 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf r-base-dev all 4.2.2.20221110-1 [4488 B]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-2 [10.5 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf libregexp-ipv6-perl all 0.03-3 [5212 B]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf liburi-perl all 5.17-1 [90.4 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libhttp-message-perl all 6.44-1 [81.7 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-3 [9724 B]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf libmro-compat-perl all 0.15-1 [12.6 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-2+b1 [12.2 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-2 [16.8 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2200-1+b2 [794 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-3 [10.6 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.86.0-2 [318 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-8+b1 [55.9 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf hdf5-helpers armhf 1.10.8+repack-4 [27.7 kB]
Ign:200 http://172.17.4.1/private bookworm-staging/main armhf hdf5-helpers armhf 1.10.8+repack-4
Get:201 http://172.17.4.1/private bookworm-staging/main armhf libaec0 armhf 1.0.6-1 [19.3 kB]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf libsz2 armhf 1.0.6-1 [7452 B]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf libaec-dev armhf 1.0.6-1 [17.6 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf libsnappy1v5 armhf 1.1.9-2 [25.5 kB]
Get:205 http://172.17.4.1/private bookworm-staging/main armhf libblosc1 armhf 1.21.1+ds2-3 [38.9 kB]
Get:206 http://172.17.4.1/private bookworm-staging/main armhf libcurl4-openssl-dev armhf 7.86.0-2 [398 kB]
Get:207 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-103-1 armhf 1.10.8+repack-4 [1221 kB]
Get:208 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.8+repack-4 [116 kB]
Get:209 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-fortran-102 armhf 1.10.8+repack-4 [82.0 kB]
Get:210 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-100 armhf 1.10.8+repack-4 [64.5 kB]
Get:211 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.8+repack-4 [38.6 kB]
Get:212 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.8+repack-4 [25.0 kB]
Get:213 http://172.17.4.1/private bookworm-staging/main armhf libssl-dev armhf 3.0.7-1 [2095 kB]
Get:214 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-dev armhf 1.10.8+repack-4 [2306 kB]
Get:215 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocgenerics all 0.44.0-2 [600 kB]
Get:216 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lattice armhf 0.20-45-3 [1176 kB]
Get:217 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrix armhf 1.5-1-1 [3685 kB]
Get:218 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrixstats armhf 0.63.0-1 [453 kB]
Get:219 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-matrixgenerics all 1.10.0-1 [302 kB]
Get:220 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-s4vectors armhf 0.36.0-1 [2036 kB]
Get:221 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-iranges armhf 2.32.0-1 [2214 kB]
Get:222 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-delayedarray armhf 0.24.0+dfsg-1 [1925 kB]
Get:223 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-rhdf5lib armhf 1.20.0+dfsg-1 [102 kB]
Get:224 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-rhdf5filters armhf 1.10.0+dfsg-1 [120 kB]
Get:225 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-rhdf5 armhf 2.42.0+dfsg-1 [787 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf hdf5-helpers armhf 1.10.8+repack-4 [27.7 kB]
debconf: delaying package configuration, since apt-utils is not installed
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invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
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Setting up libblas3:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libpkgconf3:armhf (1.8.0-11) ...
Setting up libalgorithm-c3-perl (0.11-2) ...
Setting up libjpeg62-turbo:armhf (1:2.1.2-1) ...
Setting up libswitch-perl (2.17-3) ...
Setting up libx11-data (2:1.8.1-2) ...
Setting up libjpeg62-turbo-dev:armhf (1:2.1.2-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.3+20220423-2) ...
Setting up xz-utils (5.2.8-0.0) ...
Setting up libfribidi0:armhf (1.0.8-2.1) ...
Setting up libpng16-16:armhf (1.6.38-2) ...
Setting up libpcre32-3:armhf (2:8.39-14) ...
Setting up libatomic1:armhf (12.2.0-9+rpi1) ...
Setting up libvariable-magic-perl (0.63-1+b1) ...
Setting up libio-html-perl (1.004-3) ...
Setting up libtcl8.6:armhf (8.6.13+dfsg-1) ...
Setting up autopoint (0.21-10) ...
Setting up libb-hooks-op-check-perl:armhf (0.22-2+b1) ...
Setting up icu-devtools (72.1-3) ...
Setting up fonts-dejavu-core (2.37-2) ...
Setting up ucf (3.0043) ...
Setting up pkgconf-bin (1.8.0-11) ...
Setting up libparams-util-perl (1.102-2+b1) ...
Setting up libgfortran5:armhf (12.2.0-9+rpi1) ...
Setting up autoconf (2.71-2) ...
Setting up libsub-exporter-progressive-perl (0.001013-3) ...
Setting up libwebp7:armhf (1.2.2-2+b1) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up libregexp-ipv6-perl (0.03-3) ...
Setting up liblzma-dev:armhf (5.2.8-0.0) ...
Setting up libubsan1:armhf (12.2.0-9+rpi1) ...
Setting up libsub-name-perl:armhf (0.26-2+b1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-4.1) ...
Setting up libpcre2-posix3:armhf (10.40-2) ...
Setting up libmd0:armhf (1.0.4-2) ...
Setting up mount (2.38.1-4) ...
Setting up libasan8:armhf (12.2.0-9+rpi1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libblosc1:armhf (1.21.1+ds2-3) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libthai-data (0.1.29-1) ...
Setting up libdevel-globaldestruction-perl (0.14-4) ...
Setting up libdevel-stacktrace-perl (2.0400-2) ...
Setting up libtiff5:armhf (4.4.0-6) ...
Setting up libbsd0:armhf (0.11.7-1) ...
Setting up libelf1:armhf (0.187-2+rpi2) ...
Setting up libicu-dev:armhf (72.1-3) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.1) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up libcc1-0:armhf (12.2.0-9+rpi1) ...
Setting up liburi-perl (5.17-1) ...
Setting up libblas-dev:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up libsz2:armhf (1.0.6-1) ...
Setting up dctrl-tools (2.24-3) ...
Setting up libbz2-dev:armhf (1.0.8-5+b2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.0-2) ...
Setting up libpaper1:armhf (1.1.28) ...

Creating config file /etc/papersize with new version
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.05-2) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.3+20220423-2) ...
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-10) ...
Setting up libpcre2-dev:armhf (10.40-2) ...
Setting up libtool (2.4.7-5) ...
Setting up libxcb-render0:armhf (1.15-1) ...
Setting up libpcre3-dev:armhf (2:8.39-14) ...
Setting up fontconfig-config (2.13.1-4.5) ...
Setting up libpng-dev:armhf (1.6.38-2) ...
Setting up libaec-dev:armhf (1.0.6-1) ...
Setting up libssl3:armhf (3.0.7-1) ...
Setting up libjpeg-dev:armhf (1:2.1.2-1) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up libpaper-utils (1.1.28) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libreadline-dev:armhf (8.2-1.2) ...
Setting up libdevel-callchecker-perl:armhf (0.008-2) ...
Setting up pkgconf:armhf (1.8.0-11) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:armhf (0.1.29-1) ...
Setting up libfreetype6:armhf (2.12.1+dfsg-3) ...
Setting up libgcc-12-dev:armhf (12.2.0-9+rpi1) ...
Setting up libssl-dev:armhf (3.0.7-1) ...
Setting up liblapack-dev:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.112-1) ...
Setting up pkg-config:armhf (1.8.0-11) ...
Setting up dh-strip-nondeterminism (1.13.0-2) ...
Setting up dwz (0.14+20220924-2) ...
Setting up groff-base (1.22.4-9) ...
Setting up libncurses5-dev:armhf (6.3+20220423-2) ...
Setting up libx11-6:armhf (2:1.8.1-2) ...
Setting up libharfbuzz0b:armhf (5.2.0-2+b1) ...
Setting up libssh2-1:armhf (1.10.0-3+b1) ...
Setting up libmro-compat-perl (0.15-1) ...
Setting up openssl (3.0.7-1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.3-3) ...
Setting up libsub-exporter-perl (0.988-1) ...
Setting up libhttp-message-perl (6.44-1) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up libstdc++-12-dev:armhf (12.2.0-9+rpi1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libcurl3-gnutls:armhf (7.86.0-2) ...
Setting up libgfortran-12-dev:armhf (12.2.0-9+rpi1) ...
Setting up man-db (2.11.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
Setting up gcc-12 (12.2.0-9+rpi1) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libxt6:armhf (1:1.2.1-1) ...
Setting up xauth (1:1.1.1-1) ...
Setting up libcurl4:armhf (7.86.0-2) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up g++-12 (12.2.0-9+rpi1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libwww-curl-perl:armhf (4.17-8+b1) ...
Setting up debhelper (13.11.1) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-1) ...
Setting up gfortran-12 (12.2.0-9+rpi1) ...
Setting up libcurl4-openssl-dev (7.86.0-2) ...
Setting up libhdf5-103-1:armhf (1.10.8+repack-4) ...
Setting up libpackage-deprecationmanager-perl (0.17-2) ...
Setting up libhdf5-cpp-103-1:armhf (1.10.8+repack-4) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b1) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up libhdf5-hl-100:armhf (1.10.8+repack-4) ...
Setting up libmoose-perl:armhf (2.2200-1+b2) ...
Setting up gfortran (4:12.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libhdf5-hl-cpp-100:armhf (1.10.8+repack-4) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libhdf5-fortran-102:armhf (1.10.8+repack-4) ...
Setting up libhdf5-hl-fortran-100:armhf (1.10.8+repack-4) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Setting up libhdf5-dev (1.10.8+repack-4) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Processing triggers for libc-bin (2.35-2+rpi1) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.13.1-4.5) ...
Setting up fontconfig (2.13.1-4.5) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libtk8.6:armhf (8.6.13-1) ...
Setting up libpango-1.0-0:armhf (1.50.10+ds-1) ...
Setting up libcairo2:armhf (1.16.0-6) ...
Setting up libpangoft2-1.0-0:armhf (1.50.10+ds-1) ...
Setting up libpangocairo-1.0-0:armhf (1.50.10+ds-1) ...
Setting up r-base-core (4.2.2.20221110-1) ...

Creating config file /etc/R/Renviron with new version
Setting up r-cran-lattice (0.20-45-3) ...
Setting up r-bioc-biocgenerics (0.44.0-2) ...
Setting up r-cran-matrixstats (0.63.0-1) ...
Setting up r-base-dev (4.2.2.20221110-1) ...
Setting up r-bioc-matrixgenerics (1.10.0-1) ...
Setting up r-bioc-rhdf5lib (1.20.0+dfsg-1) ...
Setting up r-bioc-rhdf5filters (1.10.0+dfsg-1) ...
Setting up r-bioc-s4vectors (0.36.0-1) ...
Setting up r-cran-matrix (1.5-1-1) ...
Setting up r-bioc-iranges (2.32.0-1) ...
Setting up dh-r (20210816) ...
Setting up r-bioc-delayedarray (0.24.0+dfsg-1) ...
Setting up r-bioc-rhdf5 (2.42.0+dfsg-1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.35-2+rpi1) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.39-6+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-9+rpi1 gcc-12_12.2.0-9+rpi1 libc6-dev_2.35-2+rpi1 libstdc++-12-dev_12.2.0-9+rpi1 libstdc++6_12.2.0-9+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 apt_2.5.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2~rc2-2 binutils_2.39-6+rpi1 binutils-arm-linux-gnueabihf_2.39-6+rpi1 binutils-common_2.39-6+rpi1 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-9+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 dctrl-tools_2.24-3 debconf_1.5.79 debhelper_13.11.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-1 dirmngr_2.2.39-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 fontconfig_2.13.1-4.5 fontconfig-config_2.13.1-4.5 fonts-dejavu-core_2.37-2 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-9+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-9+rpi1 gcc-12-base_12.2.0-9+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-10 gettext-base_0.21-10 gfortran_4:12.2.0-1+rpi1 gfortran-12_12.2.0-9+rpi1 gnupg_2.2.39-1 gnupg-l10n_2.2.39-1 gnupg-utils_2.2.39-1 gpg_2.2.39-1 gpg-agent_2.2.39-1 gpg-wks-client_2.2.39-1 gpg-wks-server_2.2.39-1 gpgconf_2.2.39-1 gpgsm_2.2.39-1 gpgv_2.2.39-1 grep_3.7-1 groff-base_1.22.4-9 gzip_1.12-1 hdf5-helpers_1.10.8+repack-4 hostname_3.23 icu-devtools_72.1-3 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20211215-1 krb5-locales_1.20-1 libacl1_2.3.1-1 libaec-dev_1.0.6-1 libaec0_1.0.6-1 libalgorithm-c3-perl_0.11-2 libapt-pkg6.0_2.5.3 libarchive-zip-perl_1.68-1 libasan8_12.2.0-9+rpi1 libassuan0_2.5.5-4 libatomic1_12.2.0-9+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2+b1 libbinutils_2.39-6+rpi1 libblas-dev_3.10.1-2 libblas3_3.10.1-2 libblkid1_2.38.1-4 libblosc1_1.21.1+ds2-3 libbrotli1_1.0.9-2+b2 libbsd0_0.11.7-1 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.35-2+rpi1 libc-dev-bin_2.35-2+rpi1 libc6_2.35-2+rpi1 libc6-dev_2.35-2+rpi1 libcairo2_1.16.0-6 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-9+rpi1 libclass-c3-perl_0.35-2 libclass-load-perl_0.25-1 libclass-load-xs-perl_0.10-2+b1 libclone-perl_0.46-1 libcom-err2_1.46.6~rc1-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.39-6+rpi1 libctf0_2.39-6+rpi1 libcurl3-gnutls_7.86.0-2 libcurl4_7.86.0-2 libcurl4-openssl-dev_7.86.0-2 libdata-optlist-perl_0.112-1 libdatrie1_0.2.13-2+b2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.11.1 libdeflate0_1.14-1 libdevel-callchecker-perl_0.008-2 libdevel-globaldestruction-perl_0.14-4 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-2 libdist-checkconflicts-perl_0.11-2 libdpkg-perl_1.21.9+rpi1 libdynaloader-functions-perl_0.003-3 libelf1_0.187-2+rpi2 libencode-locale-perl_1.05-3 libeval-closure-perl_0.14-3 libexpat1_2.5.0-1 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-2 libfile-which-perl_1.27-2 libfontconfig1_2.13.1-4.5 libfreetype6_2.12.1+dfsg-3 libfribidi0_1.0.8-2.1 libgcc-12-dev_12.2.0-9+rpi1 libgcc-s1_12.2.0-9+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran-12-dev_12.2.0-9+rpi1 libgfortran5_12.2.0-9+rpi1 libglib2.0-0_2.74.1-2 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-2 libgomp1_12.2.0-9+rpi1 libgpg-error0_1.45-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20-1 libharfbuzz0b_5.2.0-2+b1 libhdf5-103-1_1.10.8+repack-4 libhdf5-cpp-103-1_1.10.8+repack-4 libhdf5-dev_1.10.8+repack-4 libhdf5-fortran-102_1.10.8+repack-4 libhdf5-hl-100_1.10.8+repack-4 libhdf5-hl-cpp-100_1.10.8+repack-4 libhdf5-hl-fortran-100_1.10.8+repack-4 libhogweed6_3.8.1-2 libhttp-date-perl_6.05-2 libhttp-message-perl_6.44-1 libice6_2:1.0.10-1 libicu-dev_72.1-3 libicu72_72.1-3 libidn2-0_2.3.3-1 libio-html-perl_1.004-3 libisl23_0.25-1 libjbig0_2.1-3.1+b2 libjpeg-dev_1:2.1.2-1 libjpeg62-turbo_1:2.1.2-1 libjpeg62-turbo-dev_1:2.1.2-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 liblapack-dev_3.10.1-2 liblapack3_3.10.1-2 libldap-2.5-0_2.5.13+dfsg-2+rpi1 liblerc4_4.0.0+ds-2 liblwp-mediatypes-perl_6.04-1 liblz4-1_1.9.4-1+rpi1 liblzma-dev_5.2.8-0.0 liblzma5_5.2.8-0.0 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 libmodule-implementation-perl_0.09-2 libmodule-runtime-conflicts-perl_0.003-2 libmodule-runtime-perl_0.016-2 libmoose-perl_2.2200-1+b2 libmount1_2.38.1-4 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libmro-compat-perl_0.15-1 libnamespace-clean-perl_0.27-2 libncurses-dev_6.3+20220423-2 libncurses5-dev_6.3+20220423-2 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.50.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpackage-deprecationmanager-perl_0.17-2 libpackage-stash-perl_0.40-1 libpackage-stash-xs-perl_0.30-1+b1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpango-1.0-0_1.50.10+ds-1 libpangocairo-1.0-0_1.50.10+ds-1 libpangoft2-1.0-0_1.50.10+ds-1 libpaper-utils_1.1.28 libpaper1_1.1.28 libparams-classify-perl_0.015-2+b1 libparams-util-perl_1.102-2+b1 libpcre16-3_2:8.39-14 libpcre2-16-0_10.40-2 libpcre2-32-0_10.40-2 libpcre2-8-0_10.40-2 libpcre2-dev_10.40-2 libpcre2-posix3_10.40-2 libpcre3_2:8.39-14 libpcre3-dev_2:8.39-14 libpcre32-3_2:8.39-14 libpcrecpp0v5_2:8.39-14 libperl5.32_5.32.1-6 libperl5.34_5.34.0-5 libperl5.36_5.36.0-4 libpipeline1_1.5.7-1 libpixman-1-0_0.42.2-1 libpkgconf3_1.8.0-11 libpng-dev_1.6.38-2 libpng16-16_1.6.38-2 libpsl5_0.21.0-1.2 libreadline-dev_8.2-1.2 libreadline8_8.2-1.2 libregexp-ipv6-perl_0.03-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-8 libsasl2-modules-db_2.1.28+dfsg-8 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsm6_2:1.2.3-1 libsmartcols1_2.38.1-4 libsnappy1v5_1.1.9-2 libsqlite3-0_3.39.4-1 libss2_1.46.6~rc1-1 libssh2-1_1.10.0-3+b1 libssl-dev_3.0.7-1 libssl1.1_1.1.1o-1 libssl3_3.0.7-1 libstdc++-12-dev_12.2.0-9+rpi1 libstdc++6_12.2.0-9+rpi1 libsub-exporter-perl_0.988-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-3 libsub-install-perl_0.928-3 libsub-name-perl_0.26-2+b1 libsub-override-perl_0.09-4 libswitch-perl_2.17-3 libsystemd0_251.5-1+rpi1 libsz2_1.0.6-1 libtasn1-6_4.19.0-2 libtcl8.6_8.6.13+dfsg-1 libthai-data_0.1.29-1 libthai0_0.1.29-1 libtiff5_4.4.0-6 libtimedate-perl_2.3300-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtk8.6_8.6.13-1 libtool_2.4.7-5 libtry-tiny-perl_0.31-2 libubsan1_12.2.0-9+rpi1 libuchardet0_0.0.7-1 libudev1_251.5-1+rpi1 libunistring2_1.0-2 liburi-perl_5.17-1 libuuid1_2.38.1-4 libvariable-magic-perl_0.63-1+b1 libwebp7_1.2.2-2+b1 libwww-curl-perl_4.17-8+b1 libwww-curl-simple-perl_0.100191-3 libx11-6_2:1.8.1-2 libx11-data_2:1.8.1-2 libxau6_1:1.0.9-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1.1 libxmuu1_2:1.1.3-3 libxrender1_1:0.9.10-1.1 libxss1_1:1.2.3-1 libxt6_1:1.2.1-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.6-1+rpi1 login_1:4.12.3+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.1-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-4 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 openssl_3.0.7-1 passwd_1:4.12.3+dfsg1-1 patch_2.7.6-7 perl_5.36.0-4 perl-base_5.36.0-4 perl-modules-5.32_5.32.1-6 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-4 pinentry-curses_1.2.0-2 pkg-config_1.8.0-11 pkgconf_1.8.0-11 pkgconf-bin_1.8.0-11 po-debconf_1.0.21+nmu1 r-base-core_4.2.2.20221110-1 r-base-dev_4.2.2.20221110-1 r-bioc-biocgenerics_0.44.0-2 r-bioc-delayedarray_0.24.0+dfsg-1 r-bioc-iranges_2.32.0-1 r-bioc-matrixgenerics_1.10.0-1 r-bioc-rhdf5_2.42.0+dfsg-1 r-bioc-rhdf5filters_1.10.0+dfsg-1 r-bioc-rhdf5lib_1.20.0+dfsg-1 r-bioc-s4vectors_0.36.0-1 r-cran-lattice_0.20-45-3 r-cran-matrix_1.5-1-1 r-cran-matrixstats_0.63.0-1 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 sysvinit-utils_3.05-6 tar_1.34+dfsg-1 tzdata_2022d-1 ucf_3.0043 unzip_6.0-27 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 x11-common_1:7.7+23 xauth_1:1.1.1-1 xdg-utils_1.1.3-4.1 xz-utils_5.2.8-0.0 zip_3.0-12 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

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Hash: SHA512

Format: 3.0 (quilt)
Source: r-bioc-hdf5array
Binary: r-bioc-hdf5array
Architecture: any
Version: 1.26.0-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Steffen Moeller <moeller@debian.org>
Homepage: https://bioconductor.org/packages/HDF5Array/
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-hdf5array
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-hdf5array.git
Testsuite: autopkgtest-pkg-r
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-delayedarray (>= 0.15.16), r-bioc-rhdf5, r-cran-matrix, r-bioc-rhdf5filters, r-bioc-biocgenerics (>= 0.31.5), r-bioc-s4vectors, r-bioc-iranges, r-bioc-rhdf5lib, libhdf5-dev
Package-List:
 r-bioc-hdf5array deb gnu-r optional arch=any
Checksums-Sha1:
 dd7ba46d2ad6dd8bfe1ede8c3c6d3bfe765427ce 8097032 r-bioc-hdf5array_1.26.0.orig.tar.gz
 2f6c46037b165458fb2ba3d266019270fea52394 5948 r-bioc-hdf5array_1.26.0-1.debian.tar.xz
Checksums-Sha256:
 d0c47ddf50deae248f93d97c154e52ab2d3068ef4520c18d8c360a8735ad45f8 8097032 r-bioc-hdf5array_1.26.0.orig.tar.gz
 85eeb4d5349c3970cfd3621ddef9df8ffdfea5c774c27c1b9d508842fb61af29 5948 r-bioc-hdf5array_1.26.0-1.debian.tar.xz
Files:
 fee08903ae4e10af009d8efce66f8df9 8097032 r-bioc-hdf5array_1.26.0.orig.tar.gz
 dec2fe338a57be76c75867268729ac94 5948 r-bioc-hdf5array_1.26.0-1.debian.tar.xz

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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.FGwTnbRZ/trustedkeys.kbx': General error
gpgv: Signature made Mon Nov 21 06:32:17 2022 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./r-bioc-hdf5array_1.26.0-1.dsc
dpkg-source: info: extracting r-bioc-hdf5array in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-hdf5array_1.26.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-hdf5array_1.26.0-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_libhdf5.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=f89ee6850c51463faed427366eb0b008
JOURNAL_STREAM=8:31299
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-b7df5111-0774-42c5-9c2d-c05856fe8a75
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c38278
XDG_SESSION_TYPE=unspecified

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package r-bioc-hdf5array
dpkg-buildpackage: info: source version 1.26.0-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules binary-arch
dh binary-arch --buildsystem R
   dh_update_autotools_config -a -O--buildsystem=R
   dh_autoreconf -a -O--buildsystem=R
   dh_auto_configure -a -O--buildsystem=R
   dh_auto_build -a -O--buildsystem=R
   dh_auto_test -a -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=R
   dh_prep -a -O--buildsystem=R
   dh_auto_install --destdir=debian/r-bioc-hdf5array/ -a -O--buildsystem=R
I: R Package: HDF5Array Version: 1.26.0
I: Building using R version 4.2.2.20221110-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Mon, 21 Nov 2022 07:28:02 +0100
	mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-hdf5array/usr/lib/R/site-library
	R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-hdf5array/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 21 Nov 2022 07:28:02 +0100'"
* installing *source* package ‘HDF5Array’ ...
** using staged installation
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c H5File.c -o H5File.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c global_errmsg_buf.c -o global_errmsg_buf.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c H5DSetDescriptor.c -o H5DSetDescriptor.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c h5dimscales.c -o h5dimscales.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c uaselection.c -o uaselection.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c h5mread_helpers.c -o h5mread_helpers.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c h5mread_startscounts.c -o h5mread_startscounts.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c ChunkIterator.c -o ChunkIterator.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c h5mread_index.c -o h5mread_index.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c h5mread_sparse.c -o h5mread_sparse.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c h5mread.c -o h5mread.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c h5summarize.c -o h5summarize.o
gcc -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c R_init_HDF5Array.c -o R_init_HDF5Array.o
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o HDF5Array.so S4Vectors_stubs.o H5File.o global_errmsg_buf.o H5DSetDescriptor.o h5dimscales.o uaselection.o h5mread_helpers.o h5mread_startscounts.o ChunkIterator.o h5mread_index.o h5mread_sparse.o h5mread.o h5summarize.o R_init_HDF5Array.o /usr/lib/R/site-library/Rhdf5lib/libs/Rhdf5lib.so -L/usr/lib/arm-linux-gnueabihf/hdf5/serial/ -lhdf5 -lhdf5_hl -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-hdf5array/usr/lib/R/site-library/00LOCK-r-bioc-hdf5array-1.26.0/00new/HDF5Array/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HDF5Array)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 301.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 304.
W: Ignoring specified R dependency: R (>= 3.4)
I: Using r-bioc-delayedarray for Depends:DelayedArray (>= 0.15.16)
I: Using r-bioc-rhdf5 for Depends:rhdf5 (>= 2.31.6)
I: Using r-bioc-biocparallel for Suggests:BiocParallel
I: Using r-bioc-genomicranges for Suggests:GenomicRanges
I: Using r-bioc-summarizedexperiment for Suggests:SummarizedExperiment (>= 1.15.1)
W: Cannot find a debian package for Suggests:h5vcData
I: Using r-bioc-experimenthub for Suggests:ExperimentHub
W: Cannot find a debian package for Suggests:TENxBrainData
W: Cannot find a debian package for Suggests:zellkonverter
I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures
I: Using r-cran-runit for Suggests:RUnit
I: Using r-bioc-singlecellexperiment for Suggests:SingleCellExperiment
I: Using r-cran-matrix for Imports:Matrix
I: Using r-bioc-rhdf5filters for Imports:rhdf5filters
I: Using r-bioc-biocgenerics for Imports:BiocGenerics (>= 0.31.5)
I: Using r-bioc-s4vectors for Imports:S4Vectors
I: Using r-bioc-iranges for Imports:IRanges
I: Using r-bioc-s4vectors for LinkingTo:S4Vectors (>= 0.27.13)
I: Using r-bioc-rhdf5lib for LinkingTo:Rhdf5lib
I: BioConductor API version: r-api-bioc-3.16
I: Use r-bioc-hdf5array as Debian binary package for variables substitution
   debian/rules execute_after_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
find debian -name test_H5ADMatrixSeed-class.R -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a -O--buildsystem=R
   dh_installchangelogs -a -O--buildsystem=R
   dh_installsystemduser -a -O--buildsystem=R
   dh_perl -a -O--buildsystem=R
   dh_link -a -O--buildsystem=R
   dh_strip_nondeterminism -a -O--buildsystem=R
   dh_compress -a -O--buildsystem=R
   dh_fixperms -a -O--buildsystem=R
   dh_missing -a -O--buildsystem=R
   dh_dwz -a -O--buildsystem=R
   dh_strip -a -O--buildsystem=R
   dh_makeshlibs -a -O--buildsystem=R
   dh_shlibdeps -a -O--buildsystem=R
   dh_installdeb -a -O--buildsystem=R
   dh_gencontrol -a -O--buildsystem=R
   dh_md5sums -a -O--buildsystem=R
   dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-hdf5array' in '../r-bioc-hdf5array_1.26.0-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-hdf5array-dbgsym' in '../r-bioc-hdf5array-dbgsym_1.26.0-1_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../r-bioc-hdf5array_1.26.0-1_armhf.buildinfo
 dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> -O../r-bioc-hdf5array_1.26.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-12-06T06:11:45Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


r-bioc-hdf5array_1.26.0-1_armhf.changes:
----------------------------------------

Format: 1.8
Date: Mon, 21 Nov 2022 07:28:02 +0100
Source: r-bioc-hdf5array
Binary: r-bioc-hdf5array r-bioc-hdf5array-dbgsym
Architecture: armhf
Version: 1.26.0-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 r-bioc-hdf5array - HDF5 backend for DelayedArray objects
Changes:
 r-bioc-hdf5array (1.26.0-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
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Files:
 079d231f5029623530de4978abeda4bf 169044 debug optional r-bioc-hdf5array-dbgsym_1.26.0-1_armhf.deb
 045b9b7f5f73d5e0de93c2aa477bdbd9 10645 gnu-r optional r-bioc-hdf5array_1.26.0-1_armhf.buildinfo
 fb3dc7791206a33ad1029c2be57cc13e 8742532 gnu-r optional r-bioc-hdf5array_1.26.0-1_armhf.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: r-bioc-hdf5array
Binary: r-bioc-hdf5array r-bioc-hdf5array-dbgsym
Architecture: armhf
Version: 1.26.0-1
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Tue, 06 Dec 2022 06:11:44 +0000
Build-Path: /<<PKGBUILDDIR>>
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 autoconf (= 2.71-2),
 automake (= 1:1.16.5-1.3),
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 libgssapi-krb5-2 (= 1.20-1),
 libharfbuzz0b (= 5.2.0-2+b1),
 libhdf5-103-1 (= 1.10.8+repack-4),
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 libhdf5-dev (= 1.10.8+repack-4),
 libhdf5-fortran-102 (= 1.10.8+repack-4),
 libhdf5-hl-100 (= 1.10.8+repack-4),
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 libnghttp2-14 (= 1.50.0-1),
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 libp11-kit0 (= 0.24.1-1),
 libpackage-deprecationmanager-perl (= 0.17-2),
 libpackage-stash-perl (= 0.40-1),
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 libpam-modules (= 1.5.2-5),
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 libpaper-utils (= 1.1.28),
 libpaper1 (= 1.1.28),
 libparams-classify-perl (= 0.015-2+b1),
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 libpcre2-dev (= 10.40-2),
 libpcre2-posix3 (= 10.40-2),
 libpcre3 (= 2:8.39-14),
 libpcre3-dev (= 2:8.39-14),
 libpcre32-3 (= 2:8.39-14),
 libpcrecpp0v5 (= 2:8.39-14),
 libperl5.36 (= 5.36.0-4),
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 libreadline8 (= 8.2-1.2),
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 librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
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 libsasl2-modules-db (= 2.1.28+dfsg-8),
 libseccomp2 (= 2.5.4-1+rpi1),
 libselinux1 (= 3.4-1),
 libsm6 (= 2:1.2.3-1),
 libsmartcols1 (= 2.38.1-4),
 libsnappy1v5 (= 1.1.9-2),
 libssh2-1 (= 1.10.0-3+b1),
 libssl-dev (= 3.0.7-1),
 libssl3 (= 3.0.7-1),
 libstdc++-12-dev (= 12.2.0-9+rpi1),
 libstdc++6 (= 12.2.0-9+rpi1),
 libsub-exporter-perl (= 0.988-1),
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 libsub-override-perl (= 0.09-4),
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 libsz2 (= 1.0.6-1),
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 libthai-data (= 0.1.29-1),
 libthai0 (= 0.1.29-1),
 libtiff5 (= 4.4.0-6),
 libtimedate-perl (= 2.3300-2),
 libtinfo6 (= 6.3+20220423-2),
 libtirpc-common (= 1.3.3+ds-1),
 libtirpc-dev (= 1.3.3+ds-1),
 libtirpc3 (= 1.3.3+ds-1),
 libtk8.6 (= 8.6.13-1),
 libtool (= 2.4.7-5),
 libtry-tiny-perl (= 0.31-2),
 libubsan1 (= 12.2.0-9+rpi1),
 libuchardet0 (= 0.0.7-1),
 libudev1 (= 251.5-1+rpi1),
 libunistring2 (= 1.0-2),
 liburi-perl (= 5.17-1),
 libuuid1 (= 2.38.1-4),
 libvariable-magic-perl (= 0.63-1+b1),
 libwebp7 (= 1.2.2-2+b1),
 libwww-curl-perl (= 4.17-8+b1),
 libwww-curl-simple-perl (= 0.100191-3),
 libx11-6 (= 2:1.8.1-2),
 libx11-data (= 2:1.8.1-2),
 libxau6 (= 1:1.0.9-1),
 libxcb-render0 (= 1.15-1),
 libxcb-shm0 (= 1.15-1),
 libxcb1 (= 1.15-1),
 libxdmcp6 (= 1:1.1.2-3),
 libxext6 (= 2:1.3.4-1),
 libxft2 (= 2.3.6-1),
 libxml2 (= 2.9.14+dfsg-1.1),
 libxmuu1 (= 2:1.1.3-3),
 libxrender1 (= 1:0.9.10-1.1),
 libxss1 (= 1:1.2.3-1),
 libxt6 (= 1:1.2.1-1),
 libzstd1 (= 1.5.2+dfsg-1),
 linux-libc-dev (= 5.19.6-1+rpi1),
 login (= 1:4.12.3+dfsg1-1),
 lsb-base (= 11.4+rpi1),
 m4 (= 1.4.19-1),
 make (= 4.3-4.1),
 man-db (= 2.11.1-1),
 mawk (= 1.3.4.20200120-3.1),
 ncurses-base (= 6.3+20220423-2),
 ncurses-bin (= 6.3+20220423-2),
 openssl (= 3.0.7-1),
 patch (= 2.7.6-7),
 perl (= 5.36.0-4),
 perl-base (= 5.36.0-4),
 perl-modules-5.36 (= 5.36.0-4),
 pkg-config (= 1.8.0-11),
 pkgconf (= 1.8.0-11),
 pkgconf-bin (= 1.8.0-11),
 po-debconf (= 1.0.21+nmu1),
 r-base-core (= 4.2.2.20221110-1),
 r-base-dev (= 4.2.2.20221110-1),
 r-bioc-biocgenerics (= 0.44.0-2),
 r-bioc-delayedarray (= 0.24.0+dfsg-1),
 r-bioc-iranges (= 2.32.0-1),
 r-bioc-matrixgenerics (= 1.10.0-1),
 r-bioc-rhdf5 (= 2.42.0+dfsg-1),
 r-bioc-rhdf5filters (= 1.10.0+dfsg-1),
 r-bioc-rhdf5lib (= 1.20.0+dfsg-1),
 r-bioc-s4vectors (= 0.36.0-1),
 r-cran-lattice (= 0.20-45-3),
 r-cran-matrix (= 1.5-1-1),
 r-cran-matrixstats (= 0.63.0-1),
 readline-common (= 8.2-1.2),
 rpcsvc-proto (= 1.4.2-4),
 sed (= 4.8-1),
 sensible-utils (= 0.0.17),
 sgml-base (= 1.31),
 sysvinit-utils (= 3.05-6),
 tar (= 1.34+dfsg-1),
 tzdata (= 2022d-1),
 ucf (= 3.0043),
 unzip (= 6.0-27),
 util-linux (= 2.38.1-4),
 util-linux-extra (= 2.38.1-4),
 x11-common (= 1:7.7+23),
 xauth (= 1:1.1.1-1),
 xdg-utils (= 1.1.3-4.1),
 xz-utils (= 5.2.8-0.0),
 zip (= 3.0-12),
 zlib1g (= 1:1.2.11.dfsg-4.1),
 zlib1g-dev (= 1:1.2.11.dfsg-4.1)
Environment:
 DEB_BUILD_OPTIONS="parallel=4"
 LANG="en_GB.UTF-8"
 LC_ALL="C.UTF-8"
 SOURCE_DATE_EPOCH="1669012082"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


r-bioc-hdf5array-dbgsym_1.26.0-1_armhf.deb
------------------------------------------

 new Debian package, version 2.0.
 size 169044 bytes: control archive=540 bytes.
     402 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: r-bioc-hdf5array-dbgsym
 Source: r-bioc-hdf5array
 Version: 1.26.0-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 197
 Depends: r-bioc-hdf5array (= 1.26.0-1)
 Section: debug
 Priority: optional
 Description: debug symbols for r-bioc-hdf5array
 Build-Ids: 9435cd07b9a89f23927b6e036b084238cc7443fa

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drwxr-xr-x root/root         0 2022-11-21 06:28 ./usr/lib/
drwxr-xr-x root/root         0 2022-11-21 06:28 ./usr/lib/debug/
drwxr-xr-x root/root         0 2022-11-21 06:28 ./usr/lib/debug/.build-id/
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drwxr-xr-x root/root         0 2022-11-21 06:28 ./usr/share/
drwxr-xr-x root/root         0 2022-11-21 06:28 ./usr/share/doc/
lrwxrwxrwx root/root         0 2022-11-21 06:28 ./usr/share/doc/r-bioc-hdf5array-dbgsym -> r-bioc-hdf5array


r-bioc-hdf5array_1.26.0-1_armhf.deb
-----------------------------------

 new Debian package, version 2.0.
 size 8742532 bytes: control archive=1848 bytes.
    1352 bytes,    20 lines      control              
    2533 bytes,    30 lines      md5sums              
 Package: r-bioc-hdf5array
 Version: 1.26.0-1
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 9010
 Depends: r-base-core (>= 4.2.2.20221110-1), r-api-4.0, r-api-bioc-3.16, r-bioc-delayedarray (>= 0.15.16), r-bioc-rhdf5 (>= 2.31.6), r-cran-matrix, r-bioc-rhdf5filters, r-bioc-biocgenerics (>= 0.31.5), r-bioc-s4vectors (>= 0.27.13), r-bioc-iranges, r-bioc-rhdf5lib, libc6 (>= 2.4), libhdf5-103-1, libhdf5-hl-100
 Suggests: r-bioc-biocparallel, r-bioc-genomicranges, r-bioc-summarizedexperiment (>= 1.15.1), r-bioc-experimenthub, r-bioc-genomicfeatures, r-cran-runit, r-bioc-singlecellexperiment
 Section: gnu-r
 Priority: optional
 Homepage: https://bioconductor.org/packages/HDF5Array/
 Description: HDF5 backend for DelayedArray objects
  Implements the HDF5Array and TENxMatrix classes, 2 convenient
  and memory-efficient array-like containers for on-disk representation
  of HDF5 datasets. HDF5Array is for datasets that use the conventional
  (i.e. dense) HDF5 representation. TENxMatrix is for datasets that
  use the HDF5-based sparse matrix representation from 10x Genomics
  (e.g. the 1.3 Million Brain Cell Dataset). Both containers being
  DelayedArray extensions, they support all operations supported by
  DelayedArray objects. These operations can be either delayed or
  block-processed.

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-rw-r--r-- root/root         0 2022-11-21 06:28 ./usr/lib/R/site-library/HDF5Array/unitTests/test_HDF5Array-class.R
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-rw-r--r-- root/root     15059 2022-11-21 06:28 ./usr/lib/R/site-library/HDF5Array/unitTests/test_h5mread.R
-rw-r--r-- root/root     10101 2022-11-21 06:28 ./usr/lib/R/site-library/HDF5Array/unitTests/test_h5mread_from_reshaped.R
-rw-r--r-- root/root      2028 2022-11-21 06:28 ./usr/lib/R/site-library/HDF5Array/unitTests/test_h5utils.R
-rw-r--r-- root/root      7788 2022-11-21 06:28 ./usr/lib/R/site-library/HDF5Array/unitTests/test_uaselection.R
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-rw-r--r-- root/root       898 2022-11-21 06:28 ./usr/share/doc/r-bioc-hdf5array/changelog.Debian.gz
-rw-r--r-- root/root      9625 2022-11-21 06:28 ./usr/share/doc/r-bioc-hdf5array/copyright


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build Type: any
Build-Space: 26668
Build-Time: 100
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1280
Job: r-bioc-hdf5array_1.26.0-1
Machine Architecture: armhf
Package: r-bioc-hdf5array
Package-Time: 1420
Source-Version: 1.26.0-1
Space: 26668
Status: successful
Version: 1.26.0-1
--------------------------------------------------------------------------------
Finished at 2022-12-06T06:11:45Z
Build needed 00:23:40, 26668k disk space
Raspbian Package Auto-Building

Build log for r-bioc-hdf5array (1.26.0-1) on armhf
