r-bioc-hdf5array →
1.20.0-2 →
armhf → 2021-09-30 07:50:29
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| r-bioc-hdf5array 1.20.0-2 (armhf) Thu, 30 Sep 2021 07:24:43 +0000 |
+==============================================================================+
Package: r-bioc-hdf5array
Version: 1.20.0-2
Source Version: 1.20.0-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-24e1ad70-113f-48ed-b4ca-161ce984e734' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.8 MB in 26s (1006 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-hdf5array' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-hdf5array.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-hdf5array.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 8105 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main r-bioc-hdf5array 1.20.0-2 (dsc) [2276 B]
Get:2 http://172.17.0.1/private bookworm-staging/main r-bioc-hdf5array 1.20.0-2 (tar) [8097 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main r-bioc-hdf5array 1.20.0-2 (diff) [5884 B]
Fetched 8105 kB in 1s (10.7 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-hdf5array-CJ5DBD/r-bioc-hdf5array-1.20.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-hdf5array-CJ5DBD' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-VTcQsV/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-VTcQsV/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-VTcQsV/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-VTcQsV/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-VTcQsV/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-VTcQsV/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-VTcQsV/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-VTcQsV/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-VTcQsV/apt_archive ./ Packages [429 B]
Fetched 2105 B in 1s (2722 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-VTcQsV/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-VTcQsV/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 12 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-VTcQsV/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.9 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12484 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-delayedarray (>= 0.15.16), r-bioc-rhdf5, r-cran-matrix, r-bioc-rhdf5filters, r-bioc-biocgenerics (>= 0.31.5), r-bioc-s4vectors, r-bioc-iranges, r-bioc-rhdf5lib, libhdf5-dev
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-delayedarray (>= 0.15.16), r-bioc-rhdf5, r-cran-matrix, r-bioc-rhdf5filters, r-bioc-biocgenerics (>= 0.31.5), r-bioc-s4vectors, r-bioc-iranges, r-bioc-rhdf5lib, libhdf5-dev
dpkg-deb: building package 'sbuild-build-depends-r-bioc-hdf5array-dummy' in '/<<BUILDDIR>>/resolver-VTcQsV/apt_archive/sbuild-build-depends-r-bioc-hdf5array-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-hdf5array-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-VTcQsV/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-VTcQsV/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-VTcQsV/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-VTcQsV/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-VTcQsV/apt_archive ./ Sources [589 B]
Get:5 copy:/<<BUILDDIR>>/resolver-VTcQsV/apt_archive ./ Packages [671 B]
Fetched 2593 B in 1s (3566 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-VTcQsV/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-VTcQsV/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install r-bioc-hdf5array build dependencies (apt-based resolver)
----------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
cpp-10 dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz
file fontconfig fontconfig-config fonts-dejavu-core g++-10 gcc-10
gcc-10-base gettext gettext-base gfortran gfortran-10 groff-base
hdf5-helpers icu-devtools intltool-debian libaec-dev libaec0
libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libblosc1 libbrotli1 libbsd0
libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libffi8 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-10-dev
libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102
libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhttp-date-perl
libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3
liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1
libsigsegv2 libsm6 libsnappy1v5 libssh2-1 libstdc++-10-dev
libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl
libsz2 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6
libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl
libwebp6 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl pkg-config
po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-delayedarray
r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters
r-bioc-rhdf5lib r-bioc-s4vectors r-cran-lattice r-cran-matrix
r-cran-matrixstats sensible-utils ucf unzip x11-common xauth xdg-utils zip
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc gcc-10-locales debtags dh-make
postgresql-client-common gcc-10-doc gettext-doc libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-10-doc libcoarrays-dev groff
liblapack-doc libhdf5-doc icu-doc liblzma-doc ncurses-doc
libscalar-number-perl readline-doc libstdc++-10-doc tcl8.6 tk8.6 libtool-doc
gcj-jdk libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser
libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase
r-bioc-genomicranges r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi
r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-bioc-biocparallel
r-bioc-hdf5array r-bioc-genefilter r-bioc-summarizedexperiment
r-bioc-delayedmatrixstats r-cran-knitr r-cran-rmarkdown r-bioc-biocstyle
r-cran-runit r-bioc-xvector r-bioc-genomicalignments r-bioc-genomicfeatures
r-bioc-sparsematrixstats r-cran-testthat r-cran-dplyr r-cran-ggplot2
r-cran-tinytest r-cran-mockery r-bioc-shortread r-bioc-graph
r-cran-data.table r-cran-base64enc r-cran-markdown
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-testthat
r-cran-bit64 r-cran-knitr r-cran-rmarkdown r-bioc-biocstyle
r-bioc-genomicranges libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-10 groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev
libaec0 libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libblosc1 libbrotli1 libbsd0
libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libffi8 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102
libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhttp-date-perl
libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3
liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1
libsigsegv2 libsm6 libsnappy1v5 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libsz2 libtcl8.6
libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool
libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6
libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl pkg-config po-debconf
r-base-core r-base-dev r-bioc-biocgenerics r-bioc-delayedarray
r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters
r-bioc-rhdf5lib r-bioc-s4vectors r-cran-lattice r-cran-matrix
r-cran-matrixstats sbuild-build-depends-r-bioc-hdf5array-dummy
sensible-utils ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp-10 g++-10 gcc-10 gcc-10-base libgcc-10-dev libstdc++-10-dev
6 upgraded, 193 newly installed, 0 to remove and 6 not upgraded.
Need to get 132 MB of archives.
After this operation, 283 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-VTcQsV/apt_archive ./ sbuild-build-depends-r-bioc-hdf5array-dummy 0.invalid.0 [960 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-1 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf g++-10 armhf 10.3.0-11+rpi1 [7350 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf gcc-10 armhf 10.3.0-11+rpi1 [13.4 MB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libstdc++-10-dev armhf 10.3.0-11+rpi1 [1755 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf libgcc-10-dev armhf 10.3.0-11+rpi1 [678 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf cpp-10 armhf 10.3.0-11+rpi1 [6690 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf gcc-10-base armhf 10.3.0-11+rpi1 [206 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.4-2 [819 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf openssl armhf 1.1.1l-1 [815 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf ca-certificates all 20210119 [158 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf unzip armhf 6.0-26 [151 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-2 [80.3 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [353 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf libmd0 armhf 1.0.3-3 [27.2 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.14-3 [110 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-5 [602 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf libcurl4 armhf 7.74.0-1.3 [305 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libffi8 armhf 3.4.2-2 [21.2 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.70.0-1 [1208 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [122 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-4+rpi1 [235 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf libthai-data all 0.1.28-4.1 [171 kB]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-1+b1 [39.7 kB]
Get:85 http://172.17.0.1/private bookworm-staging/main armhf libthai0 armhf 0.1.28-4.1 [51.4 kB]
Get:86 http://172.17.0.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.48.10+ds1-1 [184 kB]
Get:87 http://172.17.0.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.48.10+ds1-1 [66.6 kB]
Get:88 http://172.17.0.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.48.10+ds1-1 [56.8 kB]
Get:89 http://172.17.0.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.11+dfsg-1 [894 kB]
Get:90 http://172.17.0.1/private bookworm-staging/main armhf libdeflate0 armhf 1.7-2 [44.1 kB]
Get:91 http://172.17.0.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:92 http://172.17.0.1/private bookworm-staging/main armhf libwebp6 armhf 0.6.1-2.1 [225 kB]
Get:93 http://172.17.0.1/private bookworm-staging/main armhf libtiff5 armhf 4.2.0-1 [268 kB]
Get:94 http://172.17.0.1/private bookworm-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:95 http://172.17.0.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:96 http://172.17.0.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:97 http://172.17.0.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.11.1-1 [681 kB]
Get:98 http://172.17.0.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:99 http://172.17.0.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:100 http://172.17.0.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.0-1 [159 kB]
Get:101 http://172.17.0.1/private bookworm-staging/main armhf r-base-core armhf 4.1.1-2 [25.3 MB]
Get:102 http://172.17.0.1/private bookworm-staging/main armhf libgfortran-10-dev armhf 10.3.0-11+rpi1 [277 kB]
Get:103 http://172.17.0.1/private bookworm-staging/main armhf gfortran-10 armhf 10.3.0-11+rpi1 [7201 kB]
Get:104 http://172.17.0.1/private bookworm-staging/main armhf gfortran armhf 4:10.2.1-1+rpi1 [1428 B]
Get:105 http://172.17.0.1/private bookworm-staging/main armhf libblas-dev armhf 3.9.0-3 [113 kB]
Get:106 http://172.17.0.1/private bookworm-staging/main armhf liblapack-dev armhf 3.9.0-3 [2980 kB]
Get:107 http://172.17.0.1/private bookworm-staging/main armhf libncurses6 armhf 6.2+20201114-4 [79.7 kB]
Get:108 http://172.17.0.1/private bookworm-staging/main armhf libncurses-dev armhf 6.2+20201114-4 [288 kB]
Get:109 http://172.17.0.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.2+20201114-4 [940 B]
Get:110 http://172.17.0.1/private bookworm-staging/main armhf libreadline-dev armhf 8.1-2 [121 kB]
Get:111 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.0.6-4 [240 kB]
Get:112 http://172.17.0.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.0.6-4 [67.8 kB]
Get:113 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.36-2 [197 kB]
Get:114 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.36-2 [187 kB]
Get:115 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-posix2 armhf 10.36-2 [48.7 kB]
Get:116 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.36-2 [626 kB]
Get:117 http://172.17.0.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-13 [235 kB]
Get:118 http://172.17.0.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-13 [228 kB]
Get:119 http://172.17.0.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB]
Get:120 http://172.17.0.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-13 [566 kB]
Get:121 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:122 http://172.17.0.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.37-3 [277 kB]
Get:123 http://172.17.0.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-4 [28.0 kB]
Get:124 http://172.17.0.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2 [219 kB]
Get:125 http://172.17.0.1/private bookworm-staging/main armhf icu-devtools armhf 67.1-7 [172 kB]
Get:126 http://172.17.0.1/private bookworm-staging/main armhf libicu-dev armhf 67.1-7 [9228 kB]
Get:127 http://172.17.0.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:128 http://172.17.0.1/private bookworm-staging/main armhf xauth armhf 1:1.1-1 [36.6 kB]
Get:129 http://172.17.0.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:130 http://172.17.0.1/private bookworm-staging/main armhf r-base-dev all 4.1.1-2 [4488 B]
Get:131 http://172.17.0.1/private bookworm-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:132 http://172.17.0.1/private bookworm-staging/main armhf libswitch-perl all 2.17-2.1 [20.0 kB]
Get:133 http://172.17.0.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get:134 http://172.17.0.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:135 http://172.17.0.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:136 http://172.17.0.1/private bookworm-staging/main armhf libio-html-perl all 1.004-2 [16.1 kB]
Get:137 http://172.17.0.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:138 http://172.17.0.1/private bookworm-staging/main armhf liburi-perl all 5.08-1 [90.6 kB]
Get:139 http://172.17.0.1/private bookworm-staging/main armhf libhttp-message-perl all 6.33-1 [80.1 kB]
Get:140 http://172.17.0.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-1+b1 [24.6 kB]
Get:141 http://172.17.0.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-1.1 [10.8 kB]
Get:142 http://172.17.0.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:143 http://172.17.0.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-1+b4 [11.0 kB]
Get:144 http://172.17.0.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.7 kB]
Get:145 http://172.17.0.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b2 [15.7 kB]
Get:146 http://172.17.0.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-1+b3 [24.6 kB]
Get:147 http://172.17.0.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:148 http://172.17.0.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:149 http://172.17.0.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-1.1 [12.4 kB]
Get:150 http://172.17.0.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.39-1 [21.9 kB]
Get:151 http://172.17.0.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:152 http://172.17.0.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-1+b4 [14.3 kB]
Get:153 http://172.17.0.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:154 http://172.17.0.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-1.1 [8312 B]
Get:155 http://172.17.0.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-1 [11.7 kB]
Get:156 http://172.17.0.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-1 [22.9 kB]
Get:157 http://172.17.0.1/private bookworm-staging/main armhf libmro-compat-perl all 0.13-1 [12.2 kB]
Get:158 http://172.17.0.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:159 http://172.17.0.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:160 http://172.17.0.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:161 http://172.17.0.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-1 [11.5 kB]
Get:162 http://172.17.0.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-1.1 [10.2 kB]
Get:163 http://172.17.0.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-1.1 [7156 B]
Get:164 http://172.17.0.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-1+b1 [13.2 kB]
Get:165 http://172.17.0.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-1.1 [16.6 kB]
Get:166 http://172.17.0.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.29-1+b2 [18.5 kB]
Get:167 http://172.17.0.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2014-2 [802 kB]
Get:168 http://172.17.0.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.62-1+b3 [43.0 kB]
Get:169 http://172.17.0.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB]
Get:170 http://172.17.0.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-1+b3 [11.6 kB]
Get:171 http://172.17.0.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:172 http://172.17.0.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.74.0-1.3 [301 kB]
Get:173 http://172.17.0.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-7+b1 [58.9 kB]
Get:174 http://172.17.0.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-2 [12.5 kB]
Get:175 http://172.17.0.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:176 http://172.17.0.1/private bookworm-staging/main armhf hdf5-helpers armhf 1.10.7+repack-1 [42.7 kB]
Get:177 http://172.17.0.1/private bookworm-staging/main armhf libaec0 armhf 1.0.6-1 [19.3 kB]
Get:178 http://172.17.0.1/private bookworm-staging/main armhf libsz2 armhf 1.0.6-1 [7452 B]
Get:179 http://172.17.0.1/private bookworm-staging/main armhf libaec-dev armhf 1.0.6-1 [17.6 kB]
Get:180 http://172.17.0.1/private bookworm-staging/main armhf libsnappy1v5 armhf 1.1.8-1 [16.7 kB]
Get:181 http://172.17.0.1/private bookworm-staging/main armhf libblosc1 armhf 1.20.1+ds1-2 [37.1 kB]
Get:182 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-103-1 armhf 1.10.7+repack-1 [1232 kB]
Get:183 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.7+repack-1 [132 kB]
Get:184 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-fortran-102 armhf 1.10.7+repack-1 [96.7 kB]
Get:185 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-hl-100 armhf 1.10.7+repack-1 [81.8 kB]
Get:186 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.7+repack-1 [53.5 kB]
Get:187 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.7+repack-1 [39.8 kB]
Get:188 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-dev armhf 1.10.7+repack-1 [2195 kB]
Get:189 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-biocgenerics all 0.38.0-1 [648 kB]
Get:190 http://172.17.0.1/private bookworm-staging/main armhf r-cran-lattice armhf 0.20-41-1+b1 [1167 kB]
Get:191 http://172.17.0.1/private bookworm-staging/main armhf r-cran-matrix armhf 1.3-2-1 [3565 kB]
Get:192 http://172.17.0.1/private bookworm-staging/main armhf r-cran-matrixstats armhf 0.61.0-1 [451 kB]
Get:193 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-matrixgenerics all 1.4.3-1 [301 kB]
Get:194 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-s4vectors armhf 0.30.0-1 [2064 kB]
Get:195 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-iranges armhf 2.26.0-1 [2205 kB]
Get:196 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-delayedarray armhf 0.18.0+dfsg-2 [1987 kB]
Get:197 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-rhdf5lib armhf 1.14.2+dfsg-2 [30.4 kB]
Get:198 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-rhdf5filters armhf 1.4.0+dfsg-3 [24.2 kB]
Get:199 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-rhdf5 armhf 2.36.0+dfsg-1 [563 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 132 MB in 14s (9187 kB/s)
Selecting previously unselected package bsdextrautils.
(Reading database ... 12484 files and directories currently installed.)
Preparing to unpack .../000-bsdextrautils_2.37.2-1_armhf.deb ...
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Unpacking man-db (2.9.4-2) ...
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Unpacking g++-10 (10.3.0-11+rpi1) over (10.3.0-9+rpi1) ...
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Unpacking gcc-10 (10.3.0-11+rpi1) over (10.3.0-9+rpi1) ...
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Unpacking libstdc++-10-dev:armhf (10.3.0-11+rpi1) over (10.3.0-9+rpi1) ...
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Unpacking libgcc-10-dev:armhf (10.3.0-11+rpi1) over (10.3.0-9+rpi1) ...
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Unpacking cpp-10 (10.3.0-11+rpi1) over (10.3.0-9+rpi1) ...
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Unpacking gcc-10-base:armhf (10.3.0-11+rpi1) over (10.3.0-9+rpi1) ...
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Unpacking sensible-utils (0.0.17) ...
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Unpacking libmagic-mgc (1:5.39-3) ...
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Unpacking libmagic1:armhf (1:5.39-3) ...
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invoke-rc.d: could not determine current runlevel
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Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl (0.015-1+b3) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl (4.17-7+b1) ...
Setting up libpaper-utils (1.1.28) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up libhdf5-hl-cpp-100:armhf (1.10.7+repack-1) ...
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up gfortran-10 (10.3.0-11+rpi1) ...
Setting up libhdf5-fortran-102:armhf (1.10.7+repack-1) ...
Setting up libdist-checkconflicts-perl (0.11-1.1) ...
Setting up libxt6:armhf (1:1.2.0-1) ...
Setting up xauth (1:1.1-1) ...
Setting up libhdf5-hl-fortran-100:armhf (1.10.7+repack-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up fontconfig (2.13.1-4.2) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.2-2) ...
Setting up libmodule-implementation-perl (0.09-1.1) ...
Setting up libpackage-stash-perl (0.39-1) ...
Setting up libtk8.6:armhf (8.6.11.1-1) ...
Setting up libpango-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up debhelper (13.5.2) ...
Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ...
Setting up gfortran (4:10.2.1-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:armhf (1.16.0-5) ...
Setting up libclass-load-perl (0.25-1) ...
Setting up libhdf5-dev (1.10.7+repack-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libpackage-deprecationmanager-perl (0.17-1.1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-1+b4) ...
Setting up libpangoft2-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up libb-hooks-endofscope-perl (0.24-1.1) ...
Setting up libpangocairo-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up libmoose-perl (2.2014-2) ...
Setting up r-base-core (4.1.1-2) ...
Creating config file /etc/R/Renviron with new version
Setting up libnamespace-clean-perl (0.27-1) ...
Setting up r-cran-lattice (0.20-41-1+b1) ...
Setting up r-bioc-biocgenerics (0.38.0-1) ...
Setting up r-cran-matrixstats (0.61.0-1) ...
Setting up r-base-dev (4.1.1-2) ...
Setting up libwww-curl-simple-perl (0.100191-2) ...
Setting up r-bioc-matrixgenerics (1.4.3-1) ...
Setting up r-bioc-rhdf5lib (1.14.2+dfsg-2) ...
Setting up r-bioc-rhdf5filters (1.4.0+dfsg-3) ...
Setting up r-bioc-s4vectors (0.30.0-1) ...
Setting up r-cran-matrix (1.3-2-1) ...
Setting up r-bioc-iranges (2.26.0-1) ...
Setting up dh-r (20210816) ...
Setting up r-bioc-delayedarray (0.18.0+dfsg-2) ...
Setting up r-bioc-rhdf5 (2.36.0+dfsg-1) ...
Setting up sbuild-build-depends-r-bioc-hdf5array-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
Processing triggers for ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-11+rpi1 gcc-10_10.3.0-11+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++6_11.2.0-4+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.51 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-1 bsdutils_1:2.37.2-1 build-essential_12.9 bzip2_1.0.8-4 ca-certificates_20210119 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-11+rpi1 dash_0.5.11+git20210120+802ebd4-1 dctrl-tools_2.24-3 debconf_1.5.77 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-11+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-11+rpi1 gcc-10-base_10.3.0-11+rpi1 gcc-11-base_11.2.0-4+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gfortran_4:10.2.1-1+rpi1 gfortran-10_10.3.0-11+rpi1 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hdf5-helpers_1.10.7+repack-1 hostname_3.23 icu-devtools_67.1-7 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libaec-dev_1.0.6-1 libaec0_1.0.6-1 libalgorithm-c3-perl_0.11-1 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libasan6_11.2.0-4+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-4+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.5-1 libaudit1_1:3.0.5-1 libb-hooks-endofscope-perl_0.24-1.1 libb-hooks-op-check-perl_0.22-1+b4 libbinutils_2.37-5+rpi1 libblas-dev_3.9.0-3 libblas3_3.9.0-3 libblkid1_2.37.2-1 libblosc1_1.20.1+ds1-2 libbrotli1_1.0.9-2+b1 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libbz2-dev_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcairo2_1.16.0-5 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-4+rpi1 libclass-c3-perl_0.35-1 libclass-load-perl_0.25-1 libclass-load-xs-perl_0.10-1+b4 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libcurl3-gnutls_7.74.0-1.3 libcurl4_7.74.0-1.3 libdata-optlist-perl_0.112-1 libdatrie1_0.2.13-1+b1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdeflate0_1.7-2 libdevel-callchecker-perl_0.008-1+b2 libdevel-globaldestruction-perl_0.14-1.1 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-1 libdist-checkconflicts-perl_0.11-1.1 libdpkg-perl_1.20.9+rpi1 libdynaloader-functions-perl_0.003-1.1 libelf1_0.185-2 libencode-locale-perl_1.05-1.1 libeval-closure-perl_0.14-1 libexpat1_2.4.1-2 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libffi8_3.4.2-2 libfile-stripnondeterminism-perl_1.12.0-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-4.2 libfreetype6_2.10.4+dfsg-1 libfribidi0_1.0.8-2 libgcc-10-dev_10.3.0-11+rpi1 libgcc-s1_11.2.0-4+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libgfortran-10-dev_10.3.0-11+rpi1 libgfortran5_11.2.0-4+rpi1 libglib2.0-0_2.70.0-1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-4+rpi1 libgpg-error0_1.42-3 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.18.3-7 libharfbuzz0b_2.7.4-1 libhdf5-103-1_1.10.7+repack-1 libhdf5-cpp-103-1_1.10.7+repack-1 libhdf5-dev_1.10.7+repack-1 libhdf5-fortran-102_1.10.7+repack-1 libhdf5-hl-100_1.10.7+repack-1 libhdf5-hl-cpp-100_1.10.7+repack-1 libhdf5-hl-fortran-100_1.10.7+repack-1 libhogweed6_3.7.3-1 libhttp-date-perl_6.05-1 libhttp-message-perl_6.33-1 libice6_2:1.0.10-1 libicu-dev_67.1-7 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-html-perl_1.004-2 libisl23_0.23-1 libjbig0_2.1-3.1+b2 libjpeg-dev_1:2.0.6-4 libjpeg62-turbo_1:2.0.6-4 libjpeg62-turbo-dev_1:2.0.6-4 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 liblapack-dev_3.9.0-3 liblapack3_3.9.0-3 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblwp-mediatypes-perl_6.04-1 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmd0_1.0.3-3 libmodule-implementation-perl_0.09-1.1 libmodule-runtime-conflicts-perl_0.003-1.1 libmodule-runtime-perl_0.016-1 libmoose-perl_2.2014-2 libmount1_2.37.2-1 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmro-compat-perl_0.13-1 libnamespace-clean-perl_0.27-1 libncurses-dev_6.2+20201114-4 libncurses5-dev_6.2+20201114-4 libncurses6_6.2+20201114-4 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-2 libpackage-deprecationmanager-perl_0.17-1.1 libpackage-stash-perl_0.39-1 libpackage-stash-xs-perl_0.29-1+b2 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpango-1.0-0_1.48.10+ds1-1 libpangocairo-1.0-0_1.48.10+ds1-1 libpangoft2-1.0-0_1.48.10+ds1-1 libpaper-utils_1.1.28 libpaper1_1.1.28 libparams-classify-perl_0.015-1+b3 libparams-util-perl_1.102-1+b1 libpcre16-3_2:8.39-13 libpcre2-16-0_10.36-2 libpcre2-32-0_10.36-2 libpcre2-8-0_10.36-2 libpcre2-dev_10.36-2 libpcre2-posix2_10.36-2 libpcre3_2:8.39-13 libpcre3-dev_2:8.39-13 libpcre32-3_2:8.39-13 libpcrecpp0v5_2:8.39-13 libperl5.32_5.32.1-5 libpipeline1_1.5.3-1 libpixman-1-0_0.40.0-1 libpng-dev_1.6.37-3 libpng16-16_1.6.37-3 libpsl5_0.21.0-1.2 libreadline-dev_8.1-2 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsm6_2:1.2.3-1 libsmartcols1_2.37.2-1 libsnappy1v5_1.1.8-1 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssh2-1_1.10.0-2 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++6_11.2.0-4+rpi1 libsub-exporter-perl_0.988-1 libsub-exporter-progressive-perl_0.001013-1 libsub-identify-perl_0.14-1+b3 libsub-install-perl_0.928-1.1 libsub-name-perl_0.26-1+b1 libsub-override-perl_0.09-2 libswitch-perl_2.17-2.1 libsystemd0_247.9-1+rpi1 libsz2_1.0.6-1 libtasn1-6_4.17.0-2 libtcl8.6_8.6.11+dfsg-1 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libthai-data_0.1.28-4.1 libthai0_0.1.28-4.1 libtiff5_4.2.0-1 libtimedate-perl_2.3300-2 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtk8.6_8.6.11.1-1 libtool_2.4.6-15 libtry-tiny-perl_0.30-1 libubsan1_11.2.0-4+rpi1 libuchardet0_0.0.7-1 libudev1_247.9-1+rpi1 libunistring2_0.9.10-6 liburi-perl_5.08-1 libuuid1_2.37.2-1 libvariable-magic-perl_0.62-1+b3 libwebp6_0.6.1-2.1 libwww-curl-perl_4.17-7+b1 libwww-curl-simple-perl_0.100191-2 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libxau6_1:1.0.9-1 libxcb-render0_1.14-3 libxcb-shm0_1.14-3 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.2-2 libxml2_2.9.12+dfsg-5 libxmuu1_2:1.1.2-2+b3 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.2.0-1 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-1 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 openssl_1.1.1l-1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-5 perl-base_5.32.1-5 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 r-base-core_4.1.1-2 r-base-dev_4.1.1-2 r-bioc-biocgenerics_0.38.0-1 r-bioc-delayedarray_0.18.0+dfsg-2 r-bioc-iranges_2.26.0-1 r-bioc-matrixgenerics_1.4.3-1 r-bioc-rhdf5_2.36.0+dfsg-1 r-bioc-rhdf5filters_1.4.0+dfsg-3 r-bioc-rhdf5lib_1.14.2+dfsg-2 r-bioc-s4vectors_0.30.0-1 r-cran-lattice_0.20-41-1+b1 r-cran-matrix_1.3-2-1 r-cran-matrixstats_0.61.0-1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-hdf5array-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021a-1 ucf_3.0043 unzip_6.0-26 util-linux_2.37.2-1 x11-common_1:7.7+23 xauth_1:1.1-1 xdg-utils_1.1.3-4.1 xz-utils_5.2.5-2 zip_3.0-12 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.zXEE1wKC/trustedkeys.kbx': General error
gpgv: Signature made Sat Sep 18 21:38:47 2021 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-hdf5array_1.20.0-2.dsc
dpkg-source: info: extracting r-bioc-hdf5array in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-hdf5array_1.20.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-hdf5array_1.20.0-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_libhdf5.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-24e1ad70-113f-48ed-b4ca-161ce984e734
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-hdf5array
dpkg-buildpackage: info: source version 1.20.0-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-hdf5array/ -a -O--buildsystem=R
I: R Package: HDF5Array Version: 1.20.0
I: Building using R version 4.1.1-2
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Sun, 19 Sep 2021 03:05:49 +0530
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-hdf5array/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-hdf5array/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 19 Sep 2021 03:05:49 +0530'"
* installing *source* package 'HDF5Array' ...
** using staged installation
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c H5File.c -o H5File.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c global_errmsg_buf.c -o global_errmsg_buf.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c H5DSetDescriptor.c -o H5DSetDescriptor.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c h5dimscales.c -o h5dimscales.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c uaselection.c -o uaselection.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c h5mread_helpers.c -o h5mread_helpers.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c h5mread_startscounts.c -o h5mread_startscounts.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ChunkIterator.c -o ChunkIterator.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c h5mread_index.c -o h5mread_index.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c h5mread_sparse.c -o h5mread_sparse.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c h5mread.c -o h5mread.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c h5summarize.c -o h5summarize.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_HDF5Array.c -o R_init_HDF5Array.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o HDF5Array.so S4Vectors_stubs.o H5File.o global_errmsg_buf.o H5DSetDescriptor.o h5dimscales.o uaselection.o h5mread_helpers.o h5mread_startscounts.o ChunkIterator.o h5mread_index.o h5mread_sparse.o h5mread.o h5summarize.o R_init_HDF5Array.o /usr/lib/R/site-library/Rhdf5lib/libs/Rhdf5lib.so -L/usr/lib/arm-linux-gnueabihf/hdf5/serial/ -lhdf5 -lhdf5_hl -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-hdf5array/usr/lib/R/site-library/00LOCK-r-bioc-hdf5array-1.20.0/00new/HDF5Array/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HDF5Array)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 299.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 303.
W: Ignoring specified R dependency: R (>= 3.4)
I: Using r-bioc-delayedarray for Depends:DelayedArray (>= 0.15.16)
I: Using r-bioc-rhdf5 for Depends:rhdf5 (>= 2.31.6)
I: Using r-bioc-biocparallel for Suggests:BiocParallel
I: Using r-bioc-genomicranges for Suggests:GenomicRanges
I: Using r-bioc-summarizedexperiment for Suggests:SummarizedExperiment (>= 1.15.1)
W: Cannot find a debian package for Suggests:h5vcData
I: Using r-bioc-experimenthub for Suggests:ExperimentHub
W: Cannot find a debian package for Suggests:TENxBrainData
W: Cannot find a debian package for Suggests:zellkonverter
I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures
I: Using r-cran-runit for Suggests:RUnit
I: Using r-bioc-singlecellexperiment for Suggests:SingleCellExperiment
I: Using r-cran-matrix for Imports:Matrix
I: Using r-bioc-rhdf5filters for Imports:rhdf5filters
I: Using r-bioc-biocgenerics for Imports:BiocGenerics (>= 0.31.5)
I: Using r-bioc-s4vectors for Imports:S4Vectors
I: Using r-bioc-iranges for Imports:IRanges
I: Using r-bioc-s4vectors for LinkingTo:S4Vectors (>= 0.27.13)
I: Using r-bioc-rhdf5lib for LinkingTo:Rhdf5lib
I: BioConductor API version: r-api-bioc-3.13
I: Use r-bioc-hdf5array as Debian binary package for variables substitution
debian/rules execute_after_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
find debian -name test_H5ADMatrixSeed-class.R -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-hdf5array-dbgsym' in '../r-bioc-hdf5array-dbgsym_1.20.0-2_armhf.deb'.
dpkg-deb: building package 'r-bioc-hdf5array' in '../r-bioc-hdf5array_1.20.0-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-bioc-hdf5array_1.20.0-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-09-30T07:50:21Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-hdf5array_1.20.0-2_armhf.changes:
----------------------------------------
Format: 1.8
Date: Sun, 19 Sep 2021 03:05:49 +0530
Source: r-bioc-hdf5array
Binary: r-bioc-hdf5array r-bioc-hdf5array-dbgsym
Architecture: armhf
Version: 1.20.0-2
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
r-bioc-hdf5array - HDF5 backend for DelayedArray objects
Changes:
r-bioc-hdf5array (1.20.0-2) unstable; urgency=medium
.
* Team Upload.
* d/rules: Remove test_H5ADMatrixSeed-class.R until zellkonverter
gets accepted, revert once done
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Files:
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-hdf5array-dbgsym_1.20.0-2_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 170708 bytes: control archive=540 bytes.
402 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-hdf5array-dbgsym
Source: r-bioc-hdf5array
Version: 1.20.0-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 199
Depends: r-bioc-hdf5array (= 1.20.0-2)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-hdf5array
Build-Ids: 16070769bc7c836eeeeb6c8af38876622ee4ebe4
drwxr-xr-x root/root 0 2021-09-18 21:35 ./
drwxr-xr-x root/root 0 2021-09-18 21:35 ./usr/
drwxr-xr-x root/root 0 2021-09-18 21:35 ./usr/lib/
drwxr-xr-x root/root 0 2021-09-18 21:35 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-09-18 21:35 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-09-18 21:35 ./usr/lib/debug/.build-id/16/
-rw-r--r-- root/root 193212 2021-09-18 21:35 ./usr/lib/debug/.build-id/16/070769bc7c836eeeeb6c8af38876622ee4ebe4.debug
drwxr-xr-x root/root 0 2021-09-18 21:35 ./usr/share/
drwxr-xr-x root/root 0 2021-09-18 21:35 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-09-18 21:35 ./usr/share/doc/r-bioc-hdf5array-dbgsym -> r-bioc-hdf5array
r-bioc-hdf5array_1.20.0-2_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 8747620 bytes: control archive=1848 bytes.
1343 bytes, 20 lines control
2533 bytes, 30 lines md5sums
Package: r-bioc-hdf5array
Version: 1.20.0-2
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 9010
Depends: r-base-core (>= 4.1.1-2), r-api-4.0, r-api-bioc-3.13, r-bioc-delayedarray (>= 0.15.16), r-bioc-rhdf5 (>= 2.31.6), r-cran-matrix, r-bioc-rhdf5filters, r-bioc-biocgenerics (>= 0.31.5), r-bioc-s4vectors (>= 0.27.13), r-bioc-iranges, r-bioc-rhdf5lib, libc6 (>= 2.4), libhdf5-103-1, libhdf5-hl-100
Suggests: r-bioc-biocparallel, r-bioc-genomicranges, r-bioc-summarizedexperiment (>= 1.15.1), r-bioc-experimenthub, r-bioc-genomicfeatures, r-cran-runit, r-bioc-singlecellexperiment
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/HDF5Array/
Description: HDF5 backend for DelayedArray objects
Implements the HDF5Array and TENxMatrix classes, 2 convenient
and memory-efficient array-like containers for on-disk representation
of HDF5 datasets. HDF5Array is for datasets that use the conventional
(i.e. dense) HDF5 representation. TENxMatrix is for datasets that
use the HDF5-based sparse matrix representation from 10x Genomics
(e.g. the 1.3 Million Brain Cell Dataset). Both containers being
DelayedArray extensions, they support all operations supported by
DelayedArray objects. These operations can be either delayed or
block-processed.
drwxr-xr-x root/root 0 2021-09-18 21:35 ./
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drwxr-xr-x root/root 0 2021-09-18 21:35 ./usr/lib/
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drwxr-xr-x root/root 0 2021-09-18 21:35 ./usr/lib/R/site-library/
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-rw-r--r-- root/root 5445 2021-09-18 21:35 ./usr/lib/R/site-library/HDF5Array/NEWS
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-rw-r--r-- root/root 8042720 2021-09-18 21:35 ./usr/lib/R/site-library/HDF5Array/extdata/toy.h5
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-rw-r--r-- root/root 10043 2021-09-18 21:35 ./usr/lib/R/site-library/HDF5Array/help/AnIndex
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-rw-r--r-- root/root 343 2021-09-18 21:35 ./usr/lib/R/site-library/HDF5Array/help/paths.rds
drwxr-xr-x root/root 0 2021-09-18 21:35 ./usr/lib/R/site-library/HDF5Array/html/
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-rw-r--r-- root/root 771 2021-09-18 21:35 ./usr/share/doc/r-bioc-hdf5array/changelog.Debian.gz
-rw-r--r-- root/root 9625 2021-09-11 07:19 ./usr/share/doc/r-bioc-hdf5array/copyright
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 26672
Build-Time: 304
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1184
Job: r-bioc-hdf5array_1.20.0-2
Machine Architecture: armhf
Package: r-bioc-hdf5array
Package-Time: 1538
Source-Version: 1.20.0-2
Space: 26672
Status: successful
Version: 1.20.0-2
--------------------------------------------------------------------------------
Finished at 2021-09-30T07:50:21Z
Build needed 00:25:38, 26672k disc space