r-bioc-gsva →
1.48.3+ds-1 →
armhf → 2023-10-06 00:25:50
sbuild (Debian sbuild) 0.85.0 (04 January 2023) on test2023
+==============================================================================+
| r-bioc-gsva 1.48.3+ds-1 (armhf) Fri, 06 Oct 2023 00:22:29 +0000 |
+==============================================================================+
Package: r-bioc-gsva
Version: 1.48.3+ds-1
Source Version: 1.48.3+ds-1
Distribution: trixie-staging
Machine Architecture: arm64
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-43194bc4-6a1e-4322-bc13-78f5f4a53281' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-gsva-KmYsef/resolver-wlTqjx' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.1 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [14.8 MB]
Fetched 28.9 MB in 5s (5517 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-gsva' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-gsva.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-gsva.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1234 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main r-bioc-gsva 1.48.3+ds-1 (dsc) [2397 B]
Get:2 http://172.17.4.1/private trixie-staging/main r-bioc-gsva 1.48.3+ds-1 (tar) [1228 kB]
Get:3 http://172.17.4.1/private trixie-staging/main r-bioc-gsva 1.48.3+ds-1 (diff) [3924 B]
Fetched 1234 kB in 0s (5776 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-gsva-KmYsef/r-bioc-gsva-1.48.3+ds' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-gsva-KmYsef' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-iranges, r-bioc-biobase, r-bioc-summarizedexperiment, r-bioc-gseabase, r-cran-matrix (>= 1.5-0), r-bioc-biocparallel, r-bioc-singlecellexperiment, r-bioc-sparsematrixstats, r-bioc-delayedarray, r-bioc-delayedmatrixstats, r-bioc-hdf5array, r-bioc-biocsingular, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-iranges, r-bioc-biobase, r-bioc-summarizedexperiment, r-bioc-gseabase, r-cran-matrix (>= 1.5-0), r-bioc-biocparallel, r-bioc-singlecellexperiment, r-bioc-sparsematrixstats, r-bioc-delayedarray, r-bioc-delayedmatrixstats, r-bioc-hdf5array, r-bioc-biocsingular, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [920 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [953 B]
Fetched 2482 B in 0s (0 B/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils bsdutils
ca-certificates dctrl-tools debhelper dh-autoreconf dh-r
dh-strip-nondeterminism dwz file fontconfig fontconfig-config
fonts-dejavu-core fonts-dejavu-mono gettext gettext-base gfortran
gfortran-12 groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev
libaec0 libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libblkid1 libblosc1
libboost1.81-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl
libclass-load-perl libclass-load-xs-perl libclone-perl libcurl3-gnutls
libcurl4 libcurl4-openssl-dev libdata-optlist-perl libdatrie1
libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-12-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102
libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhttp-date-perl
libhttp-message-perl libice6 libicu-dev libicu72 libio-html-perl libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3
liblerc4 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmount1 libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses6 libnghttp2-14
libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsharpyuv0 libsm6 libsmartcols1 libsnappy1v5
libssh2-1 libssl-dev libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl
libsub-override-perl libswitch-perl libsz2 libtcl8.6 libthai-data libthai0
libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0
liburi-perl libuuid1 libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db mount openssl pkg-config pkgconf
pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-annotate
r-bioc-annotationdbi r-bioc-beachmat r-bioc-biobase r-bioc-biocgenerics
r-bioc-biocparallel r-bioc-biocsingular r-bioc-biostrings
r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-genomeinfodb
r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-graph r-bioc-gseabase
r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics
r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays
r-bioc-s4vectors r-bioc-scaledmatrix r-bioc-singlecellexperiment
r-bioc-sparsematrixstats r-bioc-summarizedexperiment r-bioc-xvector
r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-bh r-cran-bit
r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli
r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi
r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options
r-cran-glue r-cran-httr r-cran-irlba r-cran-jsonlite r-cran-lambda.r
r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-matrix
r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl
r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-r6
r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rsqlite r-cran-rsvd r-cran-snow
r-cran-sys r-cran-vctrs r-cran-xml r-cran-xtable sensible-utils ucf unzip
util-linux x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make
postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-12-doc libcoarrays-dev groff liblapack-doc
libboost1.81-doc libboost-atomic1.81-dev libboost-chrono1.81-dev
libboost-container1.81-dev libboost-context1.81-dev
libboost-contract1.81-dev libboost-coroutine1.81-dev
libboost-date-time1.81-dev libboost-exception1.81-dev libboost-fiber1.81-dev
libboost-filesystem1.81-dev libboost-graph1.81-dev
libboost-graph-parallel1.81-dev libboost-iostreams1.81-dev
libboost-locale1.81-dev libboost-log1.81-dev libboost-math1.81-dev
libboost-mpi1.81-dev libboost-mpi-python1.81-dev libboost-numpy1.81-dev
libboost-program-options1.81-dev libboost-python1.81-dev
libboost-random1.81-dev libboost-regex1.81-dev
libboost-serialization1.81-dev libboost-stacktrace1.81-dev
libboost-system1.81-dev libboost-test1.81-dev libboost-thread1.81-dev
libboost-timer1.81-dev libboost-type-erasure1.81-dev libboost-wave1.81-dev
libboost1.81-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.81-dev
libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev
low-memory-monitor libhdf5-doc icu-doc liblzma-doc cryptsetup-bin
ncurses-doc libscalar-number-perl readline-doc libssl-doc tcl8.6 tk8.6
libtool-doc gcj-jdk libbusiness-isbn-perl libregexp-ipv6-perl libwww-perl
libcurl4-gnutls-dev m4-doc apparmor less www-browser nfs-common
libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-genefilter
r-bioc-go.db r-bioc-org.hs.eg.db r-cran-runit r-bioc-biocstyle r-cran-knitr
r-cran-testthat r-cran-rmarkdown r-cran-rcmdcheck r-bioc-all
r-bioc-rsamtools r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc
r-cran-doparallel r-bioc-variantannotation r-bioc-genomicalignments
r-bioc-shortread r-cran-batchtools r-cran-data.table r-bioc-residualmatrix
r-bioc-bsgenome r-bioc-genomicfeatures r-cran-lobstr r-cran-covr
r-cran-profmem r-bioc-rtracklayer r-bioc-gviz r-bioc-annotationhub
r-bioc-dexseq r-bioc-edger r-cran-digest r-cran-sparsem r-bioc-rbgl
r-cran-cluster r-bioc-experimenthub r-cran-markdown r-cran-bench
r-cran-dplyr r-cran-ggplot2 r-cran-mockery r-cran-tinytest r-bioc-scrnaseq
r-cran-rtsne r-cran-roxygen2 r-cran-ff r-cran-pillar r-cran-callr
r-cran-htmltools r-cran-htmlwidgets r-cran-processx r-cran-ps
r-cran-rprojroot r-cran-rstudioapi r-cran-tibble r-cran-whoami r-cran-rmysql
r-cran-shiny r-cran-forcats r-cran-magrittr r-cran-r.utils r-cran-stringr
r-cran-waldo r-cran-withr r-cran-lintr r-cran-tidyverse r-cran-getopt
r-cran-base64enc r-cran-r.devices r-cran-r.rsp r-cran-inline r-cran-fs
r-cran-usethis r-cran-gert r-cran-gh r-cran-hms r-cran-rvest r-cran-xml2
r-cran-rmpi r-cran-rlecuyer r-cran-spelling r-cran-pkgdown r-cran-zeallot
r-cran-plm r-cran-zoo r-cran-survival dosfstools kbd util-linux-extra
util-linux-locales
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libio-compress-brotli-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
uuid-runtime libmail-sendmail-perl r-recommended r-doc-html r-cran-testthat
r-cran-withr r-cran-mockery r-cran-bench r-cran-brio r-cran-callr
r-cran-covr r-cran-decor r-cran-desc r-cran-ggplot2 r-cran-knitr
r-cran-lobstr r-cran-progress r-cran-rmarkdown r-cran-scales r-cran-tibble
r-cran-spelling r-cran-magrittr r-cran-httpuv r-cran-webutils r-cran-testit
r-cran-survival r-cran-jpeg r-cran-readr r-cran-xml2 r-cran-r.rsp r-cran-sf
r-cran-runit r-cran-digest r-cran-sodium r-cran-dbitest r-cran-plyr
r-cran-generics r-cran-dplyr r-cran-waldo libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
gettext-base gfortran gfortran-12 groff-base hdf5-helpers icu-devtools
intltool-debian libaec-dev libaec0 libalgorithm-c3-perl libarchive-zip-perl
libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3
libblosc1 libboost1.81-dev libbrotli1 libbsd0 libbz2-dev libcairo2
libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl
libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-12-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102
libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhttp-date-perl
libhttp-message-perl libice6 libicu-dev libicu72 libio-html-perl libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3
liblerc4 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses6 libnghttp2-14
libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsharpyuv0 libsm6 libsnappy1v5 libssh2-1
libssl-dev libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl
libsub-override-perl libswitch-perl libsz2 libtcl8.6 libthai-data libthai0
libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0
liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db openssl pkg-config pkgconf pkgconf-bin
po-debconf r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi
r-bioc-beachmat r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel
r-bioc-biocsingular r-bioc-biostrings r-bioc-delayedarray
r-bioc-delayedmatrixstats r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-genomicranges r-bioc-graph r-bioc-gseabase r-bioc-hdf5array
r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhdf5
r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors
r-bioc-scaledmatrix r-bioc-singlecellexperiment r-bioc-sparsematrixstats
r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind
r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob
r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon
r-cran-curl r-cran-dbi r-cran-fastmap r-cran-formatr r-cran-futile.logger
r-cran-futile.options r-cran-glue r-cran-httr r-cran-irlba r-cran-jsonlite
r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-matrix
r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl
r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-r6
r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rsqlite r-cran-rsvd r-cran-snow
r-cran-sys r-cran-vctrs r-cran-xml r-cran-xtable
sbuild-build-depends-main-dummy sensible-utils ucf unzip x11-common xauth
xdg-utils zip zlib1g-dev
The following packages will be upgraded:
bsdutils libblkid1 libmount1 libsmartcols1 libuuid1 mount util-linux
7 upgraded, 261 newly installed, 0 to remove and 8 not upgraded.
Need to get 199 MB of archives.
After this operation, 590 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1004 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf bsdutils armhf 1:2.39.2-2 [85.9 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf util-linux armhf 2.39.2-2 [1106 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf mount armhf 2.39.2-2 [132 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf libblkid1 armhf 2.39.2-2 [143 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf libmount1 armhf 2.39.2-2 [166 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf libsmartcols1 armhf 2.39.2-2 [101 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf libuuid1 armhf 2.39.2-2 [27.8 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-2 [1033 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.2-2 [80.6 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.11.2-3 [1342 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf sensible-utils all 0.0.20 [19.3 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.0.11-1 [1367 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20230311 [153 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-13 [156 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf ucf all 3.0043+nmu1 [55.2 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
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Get:27 http://172.17.4.1/private trixie-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.6 [81.9 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:33 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:35 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-13 [1201 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.6 [952 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf zip armhf 3.0-13 [207 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf unzip armhf 6.0-28 [147 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf libpaper1 armhf 1.1.29 [11.9 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf libpaper-utils armhf 1.1.29 [8416 B]
Get:47 http://172.17.4.1/private trixie-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.0.9-2+b3 [258 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf libpng16-16 armhf 1.6.40-1 [258 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [366 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.14.2-6 [316 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.14.2-6 [367 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.7-4 [111 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.6-1 [323 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.6-1 [726 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf libcairo2 armhf 1.18.0-1 [425 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.56.0-1 [60.5 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-2 [195 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libcurl4 armhf 8.2.1-2+rpi1 [343 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.78.0-2+rpi1 [1249 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 12.2.0-14+rpi1 [238 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf fontconfig armhf 2.14.2-6 [461 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.0.1-1 [2098 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libpango-1.0-0 armhf 1.51.0+ds-2 [187 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libpangoft2-1.0-0 armhf 1.51.0+ds-2 [40.4 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libpangocairo-1.0-0 armhf 1.51.0+ds-2 [30.0 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-3 [133 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.3.2-0.3 [106 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.3.2-0.3 [261 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-1 [298 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf libxt6 armhf 1:1.2.1-1.1 [155 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf r-base-core armhf 4.3.1-4 [26.3 MB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libgfortran-12-dev armhf 12.2.0-14+rpi1 [285 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf gfortran-12 armhf 12.2.0-14+rpi1 [7509 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf gfortran armhf 4:12.2.0-3+rpi1 [1424 B]
Get:106 http://172.17.4.1/private trixie-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.4+20230625-2 [79.6 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf libncurses-dev armhf 6.4+20230625-2 [290 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf libreadline-dev armhf 8.2-1.3 [123 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [258 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf libpcre2-16-0 armhf 10.42-4 [211 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf libpcre2-32-0 armhf 10.42-4 [201 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf libpcre2-posix3 armhf 10.42-4 [55.1 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf libpcre2-dev armhf 10.42-4 [648 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-3 [901 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf libpng-dev armhf 1.6.40-1 [336 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf liblzma-dev armhf 5.4.4-0.1 [269 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf icu-devtools armhf 72.1-3 [175 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf libicu-dev armhf 72.1-3 [9959 kB]
Get:123 http://172.17.4.1/private trixie-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf xauth armhf 1:1.1.2-1 [32.4 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf r-base-dev all 4.3.1-4 [4512 B]
Get:130 http://172.17.4.1/private trixie-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf libhttp-date-perl all 6.05-2 [10.5 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf liburi-perl all 5.21-1 [95.6 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf libhttp-message-perl all 6.44-2 [81.8 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf libsub-install-perl all 0.929-1 [10.5 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:146 http://172.17.4.1/private trixie-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:147 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:148 http://172.17.4.1/private trixie-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:149 http://172.17.4.1/private trixie-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:150 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:151 http://172.17.4.1/private trixie-staging/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get:152 http://172.17.4.1/private trixie-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:153 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:154 http://172.17.4.1/private trixie-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:155 http://172.17.4.1/private trixie-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:156 http://172.17.4.1/private trixie-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:157 http://172.17.4.1/private trixie-staging/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get:158 http://172.17.4.1/private trixie-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:159 http://172.17.4.1/private trixie-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:160 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:161 http://172.17.4.1/private trixie-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:162 http://172.17.4.1/private trixie-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:163 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:164 http://172.17.4.1/private trixie-staging/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get:165 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:166 http://172.17.4.1/private trixie-staging/main armhf libmoose-perl armhf 2.2206-1 [795 kB]
Get:167 http://172.17.4.1/private trixie-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:168 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:169 http://172.17.4.1/private trixie-staging/main armhf libsub-identify-perl armhf 0.14-3 [10.6 kB]
Get:170 http://172.17.4.1/private trixie-staging/main armhf libsub-name-perl armhf 0.27-1 [12.0 kB]
Get:171 http://172.17.4.1/private trixie-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:172 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 8.2.1-2+rpi1 [338 kB]
Get:173 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-perl armhf 4.17-10 [55.8 kB]
Get:174 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:175 http://172.17.4.1/private trixie-staging/main armhf dh-r all 20230912 [40.8 kB]
Get:176 http://172.17.4.1/private trixie-staging/main armhf hdf5-helpers armhf 1.10.10+repack-2 [23.2 kB]
Get:177 http://172.17.4.1/private trixie-staging/main armhf libaec0 armhf 1.0.6-1 [19.3 kB]
Get:178 http://172.17.4.1/private trixie-staging/main armhf libsz2 armhf 1.0.6-1 [7452 B]
Get:179 http://172.17.4.1/private trixie-staging/main armhf libaec-dev armhf 1.0.6-1 [17.6 kB]
Get:180 http://172.17.4.1/private trixie-staging/main armhf libsnappy1v5 armhf 1.1.10-1 [24.8 kB]
Get:181 http://172.17.4.1/private trixie-staging/main armhf libblosc1 armhf 1.21.5+ds-1 [36.9 kB]
Get:182 http://172.17.4.1/private trixie-staging/main armhf libboost1.81-dev armhf 1.81.0-6 [10.4 MB]
Get:183 http://172.17.4.1/private trixie-staging/main armhf libcurl4-openssl-dev armhf 8.2.1-2+rpi1 [425 kB]
Get:184 http://172.17.4.1/private trixie-staging/main armhf libhdf5-103-1 armhf 1.10.10+repack-2 [1213 kB]
Get:185 http://172.17.4.1/private trixie-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.10+repack-2 [111 kB]
Get:186 http://172.17.4.1/private trixie-staging/main armhf libhdf5-fortran-102 armhf 1.10.10+repack-2 [77.2 kB]
Get:187 http://172.17.4.1/private trixie-staging/main armhf libhdf5-hl-100 armhf 1.10.10+repack-2 [59.8 kB]
Get:188 http://172.17.4.1/private trixie-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.10+repack-2 [34.0 kB]
Get:189 http://172.17.4.1/private trixie-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.10+repack-2 [20.5 kB]
Get:190 http://172.17.4.1/private trixie-staging/main armhf libssl-dev armhf 3.0.11-1 [2105 kB]
Get:191 http://172.17.4.1/private trixie-staging/main armhf libhdf5-dev armhf 1.10.10+repack-2 [2313 kB]
Get:192 http://172.17.4.1/private trixie-staging/main armhf r-cran-littler armhf 0.3.18-2 [86.0 kB]
Get:193 http://172.17.4.1/private trixie-staging/main armhf littler all 0.3.18-2 [14.8 kB]
Get:194 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocgenerics all 0.46.0-1 [594 kB]
Get:195 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biobase armhf 2.60.0-1 [2126 kB]
Get:196 http://172.17.4.1/private trixie-staging/main armhf r-bioc-s4vectors armhf 0.38.2+dfsg-1 [2047 kB]
Get:197 http://172.17.4.1/private trixie-staging/main armhf r-bioc-iranges armhf 2.34.1-1 [2247 kB]
Get:198 http://172.17.4.1/private trixie-staging/main armhf r-cran-dbi all 1.1.3-1 [687 kB]
Get:199 http://172.17.4.1/private trixie-staging/main armhf r-cran-bit armhf 4.0.5-1 [1066 kB]
Get:200 http://172.17.4.1/private trixie-staging/main armhf r-cran-bit64 armhf 4.0.5-1 [463 kB]
Get:201 http://172.17.4.1/private trixie-staging/main armhf r-cran-rlang armhf 1.1.1-1 [1653 kB]
Get:202 http://172.17.4.1/private trixie-staging/main armhf r-cran-cli armhf 3.6.1-1 [1307 kB]
Get:203 http://172.17.4.1/private trixie-staging/main armhf r-cran-glue armhf 1.6.2-1 [152 kB]
Get:204 http://172.17.4.1/private trixie-staging/main armhf r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB]
Get:205 http://172.17.4.1/private trixie-staging/main armhf r-cran-vctrs armhf 0.6.3-1 [1343 kB]
Get:206 http://172.17.4.1/private trixie-staging/main armhf r-cran-blob all 1.2.4-1 [49.6 kB]
Get:207 http://172.17.4.1/private trixie-staging/main armhf r-cran-fastmap armhf 1.1.1-1 [67.1 kB]
Get:208 http://172.17.4.1/private trixie-staging/main armhf r-cran-cachem armhf 1.0.8-1 [71.8 kB]
Get:209 http://172.17.4.1/private trixie-staging/main armhf r-cran-memoise all 2.0.1-1 [53.8 kB]
Get:210 http://172.17.4.1/private trixie-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:211 http://172.17.4.1/private trixie-staging/main armhf r-cran-plogr all 0.2.0-3 [14.9 kB]
Get:212 http://172.17.4.1/private trixie-staging/main armhf r-cran-cpp11 all 0.4.6-1 [219 kB]
Get:213 http://172.17.4.1/private trixie-staging/main armhf r-cran-rsqlite armhf 2.3.1-1 [995 kB]
Get:214 http://172.17.4.1/private trixie-staging/main armhf r-cran-curl armhf 5.0.2+dfsg-1 [172 kB]
Get:215 http://172.17.4.1/private trixie-staging/main armhf r-cran-jsonlite armhf 1.8.7+dfsg-1 [439 kB]
Get:216 http://172.17.4.1/private trixie-staging/main armhf r-cran-mime armhf 0.12-1 [35.6 kB]
Get:217 http://172.17.4.1/private trixie-staging/main armhf r-cran-sys armhf 3.4.2-1 [42.8 kB]
Get:218 http://172.17.4.1/private trixie-staging/main armhf r-cran-askpass armhf 1.2.0-1 [23.8 kB]
Get:219 http://172.17.4.1/private trixie-staging/main armhf r-cran-openssl armhf 2.1.0+dfsg-1 [394 kB]
Get:220 http://172.17.4.1/private trixie-staging/main armhf r-cran-r6 all 2.5.1-1 [105 kB]
Get:221 http://172.17.4.1/private trixie-staging/main armhf r-cran-httr all 1.4.7+dfsg-1 [459 kB]
Get:222 http://172.17.4.1/private trixie-staging/main armhf r-cran-png armhf 0.1-8-1 [40.2 kB]
Get:223 http://172.17.4.1/private trixie-staging/main armhf r-bioc-zlibbioc all 1.46.0+dfsg-1 [9336 B]
Get:224 http://172.17.4.1/private trixie-staging/main armhf r-bioc-xvector armhf 0.40.0-1 [617 kB]
Get:225 http://172.17.4.1/private trixie-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:226 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcurl armhf 1.98-1.12+dfsg-1 [787 kB]
Get:227 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomeinfodbdata all 1.2.10-1 [12.0 MB]
Get:228 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomeinfodb all 1.36.3+dfsg-1 [3840 kB]
Get:229 http://172.17.4.1/private trixie-staging/main armhf r-cran-crayon all 1.5.2-1 [165 kB]
Get:230 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biostrings armhf 2.68.1-1 [13.8 MB]
Get:231 http://172.17.4.1/private trixie-staging/main armhf r-bioc-keggrest all 1.40.0+dfsg-3 [186 kB]
Get:232 http://172.17.4.1/private trixie-staging/main armhf r-bioc-annotationdbi all 1.62.2-1 [4715 kB]
Get:233 http://172.17.4.1/private trixie-staging/main armhf r-cran-xml armhf 3.99-0.14-2 [1740 kB]
Get:234 http://172.17.4.1/private trixie-staging/main armhf r-cran-xtable all 1:1.8-4-2 [689 kB]
Get:235 http://172.17.4.1/private trixie-staging/main armhf r-bioc-annotate all 1.78.0+dfsg-1 [1738 kB]
Get:236 http://172.17.4.1/private trixie-staging/main armhf r-cran-lattice armhf 0.21-8-2 [1371 kB]
Get:237 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrix armhf 1.6-1-1 [3777 kB]
Get:238 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrixstats armhf 1.0.0-1 [471 kB]
Get:239 http://172.17.4.1/private trixie-staging/main armhf r-bioc-matrixgenerics all 1.12.3-1 [411 kB]
Get:240 http://172.17.4.1/private trixie-staging/main armhf r-cran-abind all 1.4-5-2 [64.6 kB]
Get:241 http://172.17.4.1/private trixie-staging/main armhf r-bioc-s4arrays armhf 1.0.6+dfsg-1 [512 kB]
Get:242 http://172.17.4.1/private trixie-staging/main armhf r-bioc-delayedarray armhf 0.26.7+dfsg-1 [1751 kB]
Get:243 http://172.17.4.1/private trixie-staging/main armhf r-cran-pkgkitten all 0.2.3-1 [26.7 kB]
Get:244 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcpp armhf 1.0.11-1 [2043 kB]
Get:245 http://172.17.4.1/private trixie-staging/main armhf r-bioc-beachmat armhf 2.16.0+ds-1 [185 kB]
Get:246 http://172.17.4.1/private trixie-staging/main armhf r-cran-formatr all 1.14-1 [152 kB]
Get:247 http://172.17.4.1/private trixie-staging/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:248 http://172.17.4.1/private trixie-staging/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:249 http://172.17.4.1/private trixie-staging/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:250 http://172.17.4.1/private trixie-staging/main armhf r-cran-snow all 1:0.4.4-2 [98.9 kB]
Get:251 http://172.17.4.1/private trixie-staging/main armhf r-cran-codetools all 0.2-19-1 [90.9 kB]
Get:252 http://172.17.4.1/private trixie-staging/main armhf r-cran-bh all 1.81.0-1 [5776 B]
Get:253 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocparallel armhf 1.34.2-1 [1337 kB]
Get:254 http://172.17.4.1/private trixie-staging/main armhf r-bioc-scaledmatrix all 1.8.1+dfsg-1 [308 kB]
Get:255 http://172.17.4.1/private trixie-staging/main armhf r-cran-irlba armhf 2.3.5.1-1 [293 kB]
Get:256 http://172.17.4.1/private trixie-staging/main armhf r-cran-rsvd all 1.0.5-1 [3589 kB]
Get:257 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocsingular armhf 1.16.0+ds-1 [338 kB]
Get:258 http://172.17.4.1/private trixie-staging/main armhf r-bioc-sparsematrixstats armhf 1.12.2+dfsg-1 [886 kB]
Get:259 http://172.17.4.1/private trixie-staging/main armhf r-bioc-delayedmatrixstats all 1.22.6+ds-1 [477 kB]
Get:260 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomicranges armhf 1.52.0+dfsg-1 [1831 kB]
Get:261 http://172.17.4.1/private trixie-staging/main armhf r-bioc-graph armhf 1.78.0-1 [1285 kB]
Get:262 http://172.17.4.1/private trixie-staging/main armhf r-bioc-gseabase all 1.62.0+ds-1 [719 kB]
Get:263 http://172.17.4.1/private trixie-staging/main armhf r-bioc-rhdf5lib armhf 1.22.1+dfsg-1 [102 kB]
Get:264 http://172.17.4.1/private trixie-staging/main armhf r-bioc-rhdf5filters armhf 1.12.1+dfsg-2 [123 kB]
Get:265 http://172.17.4.1/private trixie-staging/main armhf r-bioc-rhdf5 armhf 2.44.0+dfsg-1 [833 kB]
Get:266 http://172.17.4.1/private trixie-staging/main armhf r-bioc-hdf5array armhf 1.28.1-1 [8747 kB]
Get:267 http://172.17.4.1/private trixie-staging/main armhf r-bioc-summarizedexperiment all 1.30.2+dfsg-1 [1144 kB]
Get:268 http://172.17.4.1/private trixie-staging/main armhf r-bioc-singlecellexperiment all 1.22.0+ds-1 [842 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up liblapack3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.4+20230625-2) ...
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-13) ...
Setting up libpcre2-dev:armhf (10.42-4) ...
Setting up libtool (2.4.7-7) ...
Setting up libxcb-render0:armhf (1.15-1) ...
Setting up fontconfig-config (2.14.2-6) ...
Setting up libpng-dev:armhf (1.6.40-1) ...
Setting up libaec-dev:armhf (1.0.6-1) ...
Setting up libjpeg-dev:armhf (1:2.1.5-2) ...
Setting up libcurl3-gnutls:armhf (8.2.1-2+rpi1) ...
Setting up libgfortran-12-dev:armhf (12.2.0-14+rpi1) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libreadline-dev:armhf (8.2-1.3) ...
Setting up libdevel-callchecker-perl:armhf (0.008-2) ...
Setting up pkgconf:armhf (1.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:armhf (0.1.29-1) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up gfortran-12 (12.2.0-14+rpi1) ...
Setting up libfreetype6:armhf (2.13.2+dfsg-1) ...
Setting up liblapack-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.114-1) ...
Setting up pkg-config:armhf (1.8.1-1) ...
Setting up ucf (3.0043+nmu1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.23.0-2) ...
Setting up libcurl4:armhf (8.2.1-2+rpi1) ...
Setting up libx11-6:armhf (2:1.8.6-1) ...
Setting up libharfbuzz0b:armhf (8.0.1-1) ...
Setting up libfontconfig1:armhf (2.14.2-6) ...
Setting up libmro-compat-perl (0.15-2) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.3-3) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (6.44-2) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libpaper1:armhf (1.1.29) ...
Creating config file /etc/papersize with new version
Setting up fontconfig (2.14.2-6) ...
Regenerating fonts cache... done.
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b1) ...
Setting up libpango-1.0-0:armhf (1.51.0+ds-2) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl:armhf (4.17-10) ...
Setting up libpaper-utils (1.1.29) ...
Setting up man-db (2.11.2-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:12.2.0-3+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:armhf (1.18.0-1) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libcurl4-openssl-dev:armhf (8.2.1-2+rpi1) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libxt6:armhf (1:1.2.1-1.1) ...
Setting up libhdf5-103-1:armhf (1.10.10+repack-2) ...
Setting up xauth (1:1.1.2-1) ...
Setting up libhdf5-cpp-103-1:armhf (1.10.10+repack-2) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libpangoft2-1.0-0:armhf (1.51.0+ds-2) ...
Setting up libpangocairo-1.0-0:armhf (1.51.0+ds-2) ...
Setting up libhdf5-hl-100:armhf (1.10.10+repack-2) ...
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libtk8.6:armhf (8.6.13-2) ...
Setting up debhelper (13.11.6) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up libhdf5-hl-cpp-100:armhf (1.10.10+repack-2) ...
Setting up r-base-core (4.3.1-4) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.2-1) ...
Setting up libhdf5-fortran-102:armhf (1.10.10+repack-2) ...
Setting up r-cran-futile.options (1.0.1-3) ...
Setting up r-cran-lattice (0.21-8-2) ...
Setting up r-cran-formatr (1.14-1) ...
Setting up r-cran-xml (3.99-0.14-2) ...
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up libhdf5-hl-fortran-100:armhf (1.10.10+repack-2) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b1) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-cran-pkgkitten (0.2.3-1) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up r-bioc-genomeinfodbdata (1.2.10-1) ...
Setting up r-cran-littler (0.3.18-2) ...
Setting up r-cran-rcpp (1.0.11-1) ...
Setting up r-cran-curl (5.0.2+dfsg-1) ...
Setting up r-cran-codetools (0.2-19-1) ...
Setting up r-bioc-biocgenerics (0.46.0-1) ...
Setting up r-cran-rlang (1.1.1-1) ...
Setting up r-cran-matrixstats (1.0.0-1) ...
Setting up r-base-dev (4.3.1-4) ...
Setting up littler (0.3.18-2) ...
Setting up r-bioc-matrixgenerics (1.12.3-1) ...
Setting up r-cran-sys (3.4.2-1) ...
Setting up r-cran-plogr (0.2.0-3) ...
Setting up r-cran-mime (0.12-1) ...
Setting up libmoose-perl:armhf (2.2206-1) ...
Setting up r-cran-abind (1.4-5-2) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-cran-dbi (1.1.3-1) ...
Setting up r-cran-snow (1:0.4.4-2) ...
Setting up r-cran-glue (1.6.2-1) ...
Setting up r-cran-bit (4.0.5-1) ...
Setting up r-cran-xtable (1:1.8-4-2) ...
Setting up r-cran-cli (3.6.1-1) ...
Setting up r-cran-lifecycle (1.0.3+dfsg-1) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-cran-bit64 (4.0.5-1) ...
Setting up r-bioc-zlibbioc (1.46.0+dfsg-1) ...
Setting up r-cran-askpass (1.2.0-1) ...
Setting up r-cran-fastmap (1.1.1-1) ...
Setting up r-cran-png (0.1-8-1) ...
Setting up r-bioc-biobase (2.60.0-1) ...
Setting up r-cran-jsonlite (1.8.7+dfsg-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-cpp11 (0.4.6-1) ...
Setting up r-bioc-s4vectors (0.38.2+dfsg-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up libhdf5-dev (1.10.10+repack-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up r-cran-matrix (1.6-1-1) ...
Setting up r-cran-irlba (2.3.5.1-1) ...
Setting up r-cran-cachem (1.0.8-1) ...
Setting up r-bioc-iranges (2.34.1-1) ...
Setting up r-cran-rcurl (1.98-1.12+dfsg-1) ...
Setting up r-bioc-sparsematrixstats (1.12.2+dfsg-1) ...
Setting up r-cran-vctrs (0.6.3-1) ...
Setting up r-bioc-graph (1.78.0-1) ...
Setting up r-cran-openssl (2.1.0+dfsg-1) ...
Setting up r-bioc-s4arrays (1.0.6+dfsg-1) ...
Setting up r-bioc-biocparallel (1.34.2-1) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Setting up r-bioc-rhdf5lib (1.22.1+dfsg-1) ...
Setting up r-bioc-rhdf5filters (1.12.1+dfsg-2) ...
Setting up r-cran-rsvd (1.0.5-1) ...
Setting up r-bioc-genomeinfodb (1.36.3+dfsg-1) ...
Setting up r-cran-httr (1.4.7+dfsg-1) ...
Setting up r-cran-memoise (2.0.1-1) ...
Setting up r-cran-blob (1.2.4-1) ...
Setting up r-bioc-xvector (0.40.0-1) ...
Setting up dh-r (20230912) ...
Setting up r-cran-rsqlite (2.3.1-1) ...
Setting up r-bioc-delayedarray (0.26.7+dfsg-1) ...
Setting up r-bioc-genomicranges (1.52.0+dfsg-1) ...
Setting up r-bioc-rhdf5 (2.44.0+dfsg-1) ...
Setting up r-bioc-biostrings (2.68.1-1) ...
Setting up r-bioc-delayedmatrixstats (1.22.6+ds-1) ...
Setting up r-bioc-beachmat (2.16.0+ds-1) ...
Setting up r-bioc-scaledmatrix (1.8.1+dfsg-1) ...
Setting up r-bioc-hdf5array (1.28.1-1) ...
Setting up r-bioc-summarizedexperiment (1.30.2+dfsg-1) ...
Setting up r-bioc-keggrest (1.40.0+dfsg-3) ...
Setting up r-bioc-biocsingular (1.16.0+ds-1) ...
Setting up r-bioc-annotationdbi (1.62.2-1) ...
Setting up r-bioc-annotate (1.78.0+dfsg-1) ...
Setting up r-bioc-singlecellexperiment (1.22.0+ds-1) ...
Setting up r-bioc-gseabase (1.62.0+ds-1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.36-9+rpi1+deb12u1) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.47-v8+ #1 SMP PREEMPT Fri Sep 1 07:05:33 BST 2023 arm64 (aarch64)
Toolchain package versions: binutils_2.40-2+rpi2 dpkg-dev_1.21.22+rpi1 g++-12_12.2.0-14+rpi1 gcc-12_12.2.0-14+rpi1 libc6-dev_2.36-9+rpi1+deb12u1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 linux-libc-dev_6.1.38-1+rpi1
Package versions: adduser_3.137 apt_2.7.3 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.1 bash_5.2.15-2 binutils_2.40-2+rpi2 binutils-arm-linux-gnueabihf_2.40-2+rpi2 binutils-common_2.40-2+rpi2 bsdextrautils_2.39.2-2 bsdutils_1:2.39.2-2 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20230311 coreutils_9.1-1 cpp_4:12.2.0-3+rpi1 cpp-12_12.2.0-14+rpi1 dash_0.5.12-6 dctrl-tools_2.24-3 debconf_1.5.82 debhelper_13.11.6 debianutils_5.13 dh-autoreconf_20 dh-r_20230912 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dirmngr_2.2.40-1.1 dpkg_1.21.22+rpi1 dpkg-dev_1.21.22+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig_2.14.2-6 fontconfig-config_2.14.2-6 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:12.2.0-3+rpi1 g++-12_12.2.0-14+rpi1 gcc_4:12.2.0-3+rpi1 gcc-10-base_10.4.0-7+rpi1 gcc-12_12.2.0-14+rpi1 gcc-12-base_12.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-13 gettext-base_0.21-13 gfortran_4:12.2.0-3+rpi1 gfortran-12_12.2.0-14+rpi1 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-2 gzip_1.12-1 hdf5-helpers_1.10.10+repack-2 hostname_3.23+nmu1 icu-devtools_72.1-3 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libaec-dev_1.0.6-1 libaec0_1.0.6-1 libalgorithm-c3-perl_0.11-2 libapt-pkg6.0_2.7.3 libarchive-zip-perl_1.68-1 libasan8_12.2.0-14+rpi1 libassuan0_2.5.6-1 libatomic1_12.2.0-14+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2+b1 libbinutils_2.40-2+rpi2 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.39.2-2 libblosc1_1.21.5+ds-1 libboost1.81-dev_1.81.0-6 libbrotli1_1.0.9-2+b3 libbsd0_0.11.7-4 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.36-9+rpi1+deb12u1 libc-dev-bin_2.36-9+rpi1+deb12u1 libc6_2.36-9+rpi1+deb12u1 libc6-dev_2.36-9+rpi1+deb12u1 libcairo2_1.18.0-1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-4 libcc1-0_12.2.0-14+rpi1 libclass-c3-perl_0.35-2 libclass-load-perl_0.25-2 libclass-load-xs-perl_0.10-2+b1 libclone-perl_0.46-1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.40-2+rpi2 libctf0_2.40-2+rpi2 libcurl3-gnutls_8.2.1-2+rpi1 libcurl4_8.2.1-2+rpi1 libcurl4-openssl-dev_8.2.1-2+rpi1 libdata-optlist-perl_0.114-1 libdatrie1_0.2.13-2+b2 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.270 libdebhelper-perl_13.11.6 libdeflate0_1.18-1 libdevel-callchecker-perl_0.008-2 libdevel-globaldestruction-perl_0.14-4 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-2 libdist-checkconflicts-perl_0.11-2 libdpkg-perl_1.21.22+rpi1 libdynaloader-functions-perl_0.003-3 libelf1_0.188-2.1+rpi1 libencode-locale-perl_1.05-3 libeval-closure-perl_0.14-3 libexpat1_2.5.0-2 libext2fs2_1.47.0-2 libfakeroot_1.32.1-1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libfontconfig1_2.14.2-6 libfreetype6_2.13.2+dfsg-1 libfribidi0_1.0.13-3 libgcc-12-dev_12.2.0-14+rpi1 libgcc-s1_12.2.0-14+rpi1 libgcrypt20_1.10.2-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran-12-dev_12.2.0-14+rpi1 libgfortran5_12.2.0-14+rpi1 libglib2.0-0_2.78.0-2+rpi1 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.1-4 libgomp1_12.2.0-14+rpi1 libgpg-error0_1.47-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20.1-4 libharfbuzz0b_8.0.1-1 libhdf5-103-1_1.10.10+repack-2 libhdf5-cpp-103-1_1.10.10+repack-2 libhdf5-dev_1.10.10+repack-2 libhdf5-fortran-102_1.10.10+repack-2 libhdf5-hl-100_1.10.10+repack-2 libhdf5-hl-cpp-100_1.10.10+repack-2 libhdf5-hl-fortran-100_1.10.10+repack-2 libhogweed6_3.9.1-2 libhttp-date-perl_6.05-2 libhttp-message-perl_6.44-2 libice6_2:1.0.10-1 libicu-dev_72.1-3 libicu72_72.1-3 libidn2-0_2.3.4-1 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libx11-6_2:1.8.6-1 libx11-data_2:1.8.6-1 libxau6_1:1.0.9-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1.3 libxmuu1_2:1.1.3-3 libxrender1_1:0.9.10-1.1 libxss1_1:1.2.3-1 libxt6_1:1.2.1-1.1 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-1 linux-libc-dev_6.1.38-1+rpi1 littler_0.3.18-2 login_1:4.13+dfsg1-1 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.11.2-3 mawk_1.3.4.20230808-1 mount_2.39.2-2 ncurses-base_6.4+20230625-2 ncurses-bin_6.4+20230625-2 openssl_3.0.11-1 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-9 perl-base_5.36.0-9 perl-modules-5.36_5.36.0-9 pinentry-curses_1.2.1-1 pkg-config_1.8.1-1 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 r-base-core_4.3.1-4 r-base-dev_4.3.1-4 r-bioc-annotate_1.78.0+dfsg-1 r-bioc-annotationdbi_1.62.2-1 r-bioc-beachmat_2.16.0+ds-1 r-bioc-biobase_2.60.0-1 r-bioc-biocgenerics_0.46.0-1 r-bioc-biocparallel_1.34.2-1 r-bioc-biocsingular_1.16.0+ds-1 r-bioc-biostrings_2.68.1-1 r-bioc-delayedarray_0.26.7+dfsg-1 r-bioc-delayedmatrixstats_1.22.6+ds-1 r-bioc-genomeinfodb_1.36.3+dfsg-1 r-bioc-genomeinfodbdata_1.2.10-1 r-bioc-genomicranges_1.52.0+dfsg-1 r-bioc-graph_1.78.0-1 r-bioc-gseabase_1.62.0+ds-1 r-bioc-hdf5array_1.28.1-1 r-bioc-iranges_2.34.1-1 r-bioc-keggrest_1.40.0+dfsg-3 r-bioc-matrixgenerics_1.12.3-1 r-bioc-rhdf5_2.44.0+dfsg-1 r-bioc-rhdf5filters_1.12.1+dfsg-2 r-bioc-rhdf5lib_1.22.1+dfsg-1 r-bioc-s4arrays_1.0.6+dfsg-1 r-bioc-s4vectors_0.38.2+dfsg-1 r-bioc-scaledmatrix_1.8.1+dfsg-1 r-bioc-singlecellexperiment_1.22.0+ds-1 r-bioc-sparsematrixstats_1.12.2+dfsg-1 r-bioc-summarizedexperiment_1.30.2+dfsg-1 r-bioc-xvector_0.40.0-1 r-bioc-zlibbioc_1.46.0+dfsg-1 r-cran-abind_1.4-5-2 r-cran-askpass_1.2.0-1 r-cran-bh_1.81.0-1 r-cran-bit_4.0.5-1 r-cran-bit64_4.0.5-1 r-cran-bitops_1.0-7-1 r-cran-blob_1.2.4-1 r-cran-cachem_1.0.8-1 r-cran-cli_3.6.1-1 r-cran-codetools_0.2-19-1 r-cran-cpp11_0.4.6-1 r-cran-crayon_1.5.2-1 r-cran-curl_5.0.2+dfsg-1 r-cran-dbi_1.1.3-1 r-cran-fastmap_1.1.1-1 r-cran-formatr_1.14-1 r-cran-futile.logger_1.4.3-4 r-cran-futile.options_1.0.1-3 r-cran-glue_1.6.2-1 r-cran-httr_1.4.7+dfsg-1 r-cran-irlba_2.3.5.1-1 r-cran-jsonlite_1.8.7+dfsg-1 r-cran-lambda.r_1.2.4-2 r-cran-lattice_0.21-8-2 r-cran-lifecycle_1.0.3+dfsg-1 r-cran-littler_0.3.18-2 r-cran-matrix_1.6-1-1 r-cran-matrixstats_1.0.0-1 r-cran-memoise_2.0.1-1 r-cran-mime_0.12-1 r-cran-openssl_2.1.0+dfsg-1 r-cran-pkgconfig_2.0.3-2 r-cran-pkgkitten_0.2.3-1 r-cran-plogr_0.2.0-3 r-cran-png_0.1-8-1 r-cran-r6_2.5.1-1 r-cran-rcpp_1.0.11-1 r-cran-rcurl_1.98-1.12+dfsg-1 r-cran-rlang_1.1.1-1 r-cran-rsqlite_2.3.1-1 r-cran-rsvd_1.0.5-1 r-cran-snow_1:0.4.4-2 r-cran-sys_3.4.2-1 r-cran-vctrs_0.6.3-1 r-cran-xml_3.99-0.14-2 r-cran-xtable_1:1.8-4-2 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.08-1 tar_1.34+dfsg-1.2 tzdata_2023c-10 ucf_3.0043+nmu1 unzip_6.0-28 usr-is-merged_37 util-linux_2.39.2-2 x11-common_1:7.7+23 xauth_1:1.1.2-1 xdg-utils_1.1.3-4.1 xz-utils_5.4.4-0.1 zip_3.0-13 zlib1g_1:1.2.13.dfsg-3 zlib1g-dev_1:1.2.13.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: r-bioc-gsva
Binary: r-bioc-gsva
Architecture: any
Version: 1.48.3+ds-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Steffen Moeller <moeller@debian.org>
Homepage: https://bioconductor.org/packages/GSVA/
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-gsva
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-gsva.git
Testsuite: autopkgtest, autopkgtest-pkg-r
Testsuite-Triggers: r-cran-fastmatch, r-cran-runit
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-iranges, r-bioc-biobase, r-bioc-summarizedexperiment, r-bioc-gseabase, r-cran-matrix (>= 1.5-0), r-bioc-biocparallel, r-bioc-singlecellexperiment, r-bioc-sparsematrixstats, r-bioc-delayedarray, r-bioc-delayedmatrixstats, r-bioc-hdf5array, r-bioc-biocsingular
Package-List:
r-bioc-gsva deb gnu-r optional arch=any
Checksums-Sha1:
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Checksums-Sha256:
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Files:
2cfefcf2a7972231d0e7960f2960f5e5 1227984 r-bioc-gsva_1.48.3+ds.orig.tar.xz
c92bbf5a27453d71ebc61397d95a52f6 3924 r-bioc-gsva_1.48.3+ds-1.debian.tar.xz
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gpgv: Signature made Sat Aug 5 05:34:17 2023 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-bioc-gsva_1.48.3+ds-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-bioc-gsva in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-gsva_1.48.3+ds.orig.tar.xz
dpkg-source: info: unpacking r-bioc-gsva_1.48.3+ds-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=124
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-43194bc4-6a1e-4322-bc13-78f5f4a53281
SCHROOT_UID=114
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mRaspbian pi5 test autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package r-bioc-gsva
dpkg-buildpackage: info: source version 1.48.3+ds-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-gsva/ -a -O--buildsystem=R
I: R packages needed for DEP8: runit, fastmatch
I: R Package: GSVA Version: 1.48.3
I: Building using R version 4.3.1-4
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Sat, 05 Aug 2023 07:29:11 +0200
mkdir -p /<<BUILDDIR>>/r-bioc-gsva-1.48.3\+ds/debian/r-bioc-gsva/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-gsva-1.48.3\+ds/debian/r-bioc-gsva/usr/lib/R/site-library --clean . "--built-timestamp='Sat, 05 Aug 2023 07:29:11 +0200'"
* installing *source* package ‘GSVA’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Raspbian 12.2.0-14+rpi1) 12.2.0’
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c kernel_estimation.c -o kernel_estimation.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ks_test.c -o ks_test.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c register_cmethods.c -o register_cmethods.o
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o GSVA.so kernel_estimation.o ks_test.o register_cmethods.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-gsva/usr/lib/R/site-library/00LOCK-r-bioc-gsva-1.48.3+ds/00new/GSVA/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GSVA)
W: Ignoring specified R dependency: R (>= 3.5.0)
I: Using r-cran-runit for Recommends:runit
I: Using r-cran-fastmatch for Recommends:fastmatch
I: Using r-bioc-biocgenerics for Suggests:BiocGenerics
I: Using r-bioc-biocstyle for Suggests:BiocStyle
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-bioc-limma for Suggests:limma
I: Using r-cran-rcolorbrewer for Suggests:RColorBrewer
I: Using r-bioc-org.hs.eg.db for Suggests:org.Hs.eg.db
I: Using r-bioc-genefilter for Suggests:genefilter
I: Using r-bioc-edger for Suggests:edgeR
W: Cannot find a debian package for Suggests:GSVAdata
I: Using r-cran-shiny for Suggests:shiny
I: Using r-cran-shinydashboard for Suggests:shinydashboard
I: Using r-cran-ggplot2 for Suggests:ggplot2
I: Using r-cran-data.table for Suggests:data.table
I: Using r-cran-plotly for Suggests:plotly
I: Using r-cran-future for Suggests:future
I: Using r-cran-promises for Suggests:promises
W: Cannot find a debian package for Suggests:shinybusy
I: Using r-cran-shinyjs for Suggests:shinyjs
I: Using r-bioc-s4vectors for Imports:S4Vectors
I: Using r-bioc-iranges for Imports:IRanges
I: Using r-bioc-biobase for Imports:Biobase
I: Using r-bioc-summarizedexperiment for Imports:SummarizedExperiment
I: Using r-bioc-gseabase for Imports:GSEABase
I: Using r-cran-matrix for Imports:Matrix (>= 1.5-0)
I: Using r-bioc-biocparallel for Imports:BiocParallel
I: Using r-bioc-singlecellexperiment for Imports:SingleCellExperiment
I: Using r-bioc-sparsematrixstats for Imports:sparseMatrixStats
I: Using r-bioc-delayedarray for Imports:DelayedArray
I: Using r-bioc-delayedmatrixstats for Imports:DelayedMatrixStats
I: Using r-bioc-hdf5array for Imports:HDF5Array
I: Using r-bioc-biocsingular for Imports:BiocSingular
I: BioConductor API version: r-api-bioc-3.17
I: Use r-bioc-gsva as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-gsva-dbgsym' in '../r-bioc-gsva-dbgsym_1.48.3+ds-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-gsva' in '../r-bioc-gsva_1.48.3+ds-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-bioc-gsva_1.48.3+ds-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi5 test autobuilder <root@raspbian.org> -O../r-bioc-gsva_1.48.3+ds-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-10-06T00:25:43Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-gsva_1.48.3+ds-1_armhf.changes:
--------------------------------------
Format: 1.8
Date: Sat, 05 Aug 2023 07:29:11 +0200
Source: r-bioc-gsva
Binary: r-bioc-gsva r-bioc-gsva-dbgsym
Architecture: armhf
Version: 1.48.3+ds-1
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian pi5 test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-gsva - Gene Set Variation Analysis for microarray and RNA-seq data
Changes:
r-bioc-gsva (1.48.3+ds-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
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Files:
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8280a39d7e41886c8eb0d429ccac4dc5 12616 gnu-r optional r-bioc-gsva_1.48.3+ds-1_armhf.buildinfo
751b2342eef61e2087f2fa49e5e30332 799536 gnu-r optional r-bioc-gsva_1.48.3+ds-1_armhf.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: r-bioc-gsva
Binary: r-bioc-gsva r-bioc-gsva-dbgsym
Architecture: armhf
Version: 1.48.3+ds-1
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Fri, 06 Oct 2023 00:25:42 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
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automake (= 1:1.16.5-1.3),
autopoint (= 0.21-13),
autotools-dev (= 20220109.1),
base-files (= 13+rpi1),
base-passwd (= 3.6.1),
bash (= 5.2.15-2),
binutils (= 2.40-2+rpi2),
binutils-arm-linux-gnueabihf (= 2.40-2+rpi2),
binutils-common (= 2.40-2+rpi2),
bsdextrautils (= 2.39.2-2),
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build-essential (= 12.9),
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ca-certificates (= 20230311),
coreutils (= 9.1-1),
cpp (= 4:12.2.0-3+rpi1),
cpp-12 (= 12.2.0-14+rpi1),
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diffutils (= 1:3.8-4),
dpkg (= 1.21.22+rpi1),
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dwz (= 0.15-1),
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findutils (= 4.9.0-5),
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fontconfig-config (= 2.14.2-6),
fonts-dejavu-core (= 2.37-8),
fonts-dejavu-mono (= 2.37-8),
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g++-12 (= 12.2.0-14+rpi1),
gcc (= 4:12.2.0-3+rpi1),
gcc-12 (= 12.2.0-14+rpi1),
gcc-12-base (= 12.2.0-14+rpi1),
gettext (= 0.21-13),
gettext-base (= 0.21-13),
gfortran (= 4:12.2.0-3+rpi1),
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grep (= 3.11-3),
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icu-devtools (= 72.1-3),
init-system-helpers (= 1.65.2),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.1-3),
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libalgorithm-c3-perl (= 0.11-2),
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libbz2-dev (= 1.0.8-5+b2),
libc-bin (= 2.36-9+rpi1+deb12u1),
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libcairo2 (= 1.18.0-1),
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libclass-c3-perl (= 0.35-2),
libclass-load-perl (= 0.25-2),
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libclone-perl (= 0.46-1),
libcom-err2 (= 1.47.0-2),
libcrypt-dev (= 1:4.4.36-2),
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libdata-optlist-perl (= 0.114-1),
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libdevel-stacktrace-perl (= 2.0400-2),
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libgmp10 (= 2:6.3.0+dfsg-2),
libgnutls30 (= 3.8.1-4),
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libgpg-error0 (= 1.47-2),
libgraphite2-3 (= 1.3.14-1),
libgssapi-krb5-2 (= 1.20.1-4),
libharfbuzz0b (= 8.0.1-1),
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libice6 (= 2:1.0.10-1),
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libidn2-0 (= 2.3.4-1),
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libkrb5support0 (= 1.20.1-4),
liblapack-dev (= 3.11.0-2),
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liblz4-1 (= 1.9.4-1+rpi1+b1),
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libncursesw6 (= 6.4+20230625-2),
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libpng-dev (= 1.6.40-1),
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libsnappy1v5 (= 1.1.10-1),
libssh2-1 (= 1.11.0-2),
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libsub-install-perl (= 0.929-1),
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libunistring5 (= 1.1-2),
liburi-perl (= 5.21-1),
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libx11-6 (= 2:1.8.6-1),
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libxcb-render0 (= 1.15-1),
libxcb-shm0 (= 1.15-1),
libxcb1 (= 1.15-1),
libxdmcp6 (= 1:1.1.2-3),
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libxft2 (= 2.3.6-1),
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libxrender1 (= 1:0.9.10-1.1),
libxss1 (= 1:1.2.3-1),
libxt6 (= 1:1.2.1-1.1),
libzstd1 (= 1.5.5+dfsg2-1),
linux-libc-dev (= 6.1.38-1+rpi1),
littler (= 0.3.18-2),
login (= 1:4.13+dfsg1-1),
lsb-base (= 11.6+rpi1),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.11.2-3),
mawk (= 1.3.4.20230808-1),
ncurses-base (= 6.4+20230625-2),
ncurses-bin (= 6.4+20230625-2),
openssl (= 3.0.11-1),
patch (= 2.7.6-7),
perl (= 5.36.0-9),
perl-base (= 5.36.0-9),
perl-modules-5.36 (= 5.36.0-9),
pkg-config (= 1.8.1-1),
pkgconf (= 1.8.1-1),
pkgconf-bin (= 1.8.1-1),
po-debconf (= 1.0.21+nmu1),
r-base-core (= 4.3.1-4),
r-base-dev (= 4.3.1-4),
r-bioc-annotate (= 1.78.0+dfsg-1),
r-bioc-annotationdbi (= 1.62.2-1),
r-bioc-beachmat (= 2.16.0+ds-1),
r-bioc-biobase (= 2.60.0-1),
r-bioc-biocgenerics (= 0.46.0-1),
r-bioc-biocparallel (= 1.34.2-1),
r-bioc-biocsingular (= 1.16.0+ds-1),
r-bioc-biostrings (= 2.68.1-1),
r-bioc-delayedarray (= 0.26.7+dfsg-1),
r-bioc-delayedmatrixstats (= 1.22.6+ds-1),
r-bioc-genomeinfodb (= 1.36.3+dfsg-1),
r-bioc-genomeinfodbdata (= 1.2.10-1),
r-bioc-genomicranges (= 1.52.0+dfsg-1),
r-bioc-graph (= 1.78.0-1),
r-bioc-gseabase (= 1.62.0+ds-1),
r-bioc-hdf5array (= 1.28.1-1),
r-bioc-iranges (= 2.34.1-1),
r-bioc-keggrest (= 1.40.0+dfsg-3),
r-bioc-matrixgenerics (= 1.12.3-1),
r-bioc-rhdf5 (= 2.44.0+dfsg-1),
r-bioc-rhdf5filters (= 1.12.1+dfsg-2),
r-bioc-rhdf5lib (= 1.22.1+dfsg-1),
r-bioc-s4arrays (= 1.0.6+dfsg-1),
r-bioc-s4vectors (= 0.38.2+dfsg-1),
r-bioc-scaledmatrix (= 1.8.1+dfsg-1),
r-bioc-singlecellexperiment (= 1.22.0+ds-1),
r-bioc-sparsematrixstats (= 1.12.2+dfsg-1),
r-bioc-summarizedexperiment (= 1.30.2+dfsg-1),
r-bioc-xvector (= 0.40.0-1),
r-bioc-zlibbioc (= 1.46.0+dfsg-1),
r-cran-abind (= 1.4-5-2),
r-cran-askpass (= 1.2.0-1),
r-cran-bh (= 1.81.0-1),
r-cran-bit (= 4.0.5-1),
r-cran-bit64 (= 4.0.5-1),
r-cran-bitops (= 1.0-7-1),
r-cran-blob (= 1.2.4-1),
r-cran-cachem (= 1.0.8-1),
r-cran-cli (= 3.6.1-1),
r-cran-codetools (= 0.2-19-1),
r-cran-cpp11 (= 0.4.6-1),
r-cran-crayon (= 1.5.2-1),
r-cran-curl (= 5.0.2+dfsg-1),
r-cran-dbi (= 1.1.3-1),
r-cran-fastmap (= 1.1.1-1),
r-cran-formatr (= 1.14-1),
r-cran-futile.logger (= 1.4.3-4),
r-cran-futile.options (= 1.0.1-3),
r-cran-glue (= 1.6.2-1),
r-cran-httr (= 1.4.7+dfsg-1),
r-cran-irlba (= 2.3.5.1-1),
r-cran-jsonlite (= 1.8.7+dfsg-1),
r-cran-lambda.r (= 1.2.4-2),
r-cran-lattice (= 0.21-8-2),
r-cran-lifecycle (= 1.0.3+dfsg-1),
r-cran-littler (= 0.3.18-2),
r-cran-matrix (= 1.6-1-1),
r-cran-matrixstats (= 1.0.0-1),
r-cran-memoise (= 2.0.1-1),
r-cran-mime (= 0.12-1),
r-cran-openssl (= 2.1.0+dfsg-1),
r-cran-pkgconfig (= 2.0.3-2),
r-cran-pkgkitten (= 0.2.3-1),
r-cran-plogr (= 0.2.0-3),
r-cran-png (= 0.1-8-1),
r-cran-r6 (= 2.5.1-1),
r-cran-rcpp (= 1.0.11-1),
r-cran-rcurl (= 1.98-1.12+dfsg-1),
r-cran-rlang (= 1.1.1-1),
r-cran-rsqlite (= 2.3.1-1),
r-cran-rsvd (= 1.0.5-1),
r-cran-snow (= 1:0.4.4-2),
r-cran-sys (= 3.4.2-1),
r-cran-vctrs (= 0.6.3-1),
r-cran-xml (= 3.99-0.14-2),
r-cran-xtable (= 1:1.8-4-2),
readline-common (= 8.2-1.3),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-1),
sensible-utils (= 0.0.20),
sysvinit-utils (= 3.08-1),
tar (= 1.34+dfsg-1.2),
tzdata (= 2023c-10),
ucf (= 3.0043+nmu1),
unzip (= 6.0-28),
usr-is-merged (= 37),
util-linux (= 2.39.2-2),
x11-common (= 1:7.7+23),
xauth (= 1:1.1.2-1),
xdg-utils (= 1.1.3-4.1),
xz-utils (= 5.4.4-0.1),
zip (= 3.0-13),
zlib1g (= 1:1.2.13.dfsg-3),
zlib1g-dev (= 1:1.2.13.dfsg-3)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
LC_COLLATE="C.UTF-8"
SOURCE_DATE_EPOCH="1691213351"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-gsva-dbgsym_1.48.3+ds-1_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 4920 bytes: control archive=540 bytes.
387 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-gsva-dbgsym
Source: r-bioc-gsva
Version: 1.48.3+ds-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 17
Depends: r-bioc-gsva (= 1.48.3+ds-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-gsva
Build-Ids: 6b4528b94dbb98e2ce210705151761b3a02c24ed
drwxr-xr-x root/root 0 2023-08-05 05:29 ./
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drwxr-xr-x root/root 0 2023-08-05 05:29 ./usr/share/doc/
lrwxrwxrwx root/root 0 2023-08-05 05:29 ./usr/share/doc/r-bioc-gsva-dbgsym -> r-bioc-gsva
r-bioc-gsva_1.48.3+ds-1_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 799536 bytes: control archive=2472 bytes.
1617 bytes, 21 lines control
3904 bytes, 49 lines md5sums
Package: r-bioc-gsva
Version: 1.48.3+ds-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 907
Depends: r-api-4.0, r-api-bioc-3.17, r-bioc-s4vectors, r-bioc-iranges, r-bioc-biobase, r-bioc-summarizedexperiment, r-bioc-gseabase, r-cran-matrix (>= 1.5-0), r-bioc-biocparallel, r-bioc-singlecellexperiment, r-bioc-sparsematrixstats, r-bioc-delayedarray, r-bioc-delayedmatrixstats, r-bioc-hdf5array, r-bioc-biocsingular, libc6 (>= 2.4)
Recommends: r-cran-runit, r-cran-fastmatch
Suggests: r-bioc-biocgenerics, r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-bioc-limma, r-cran-rcolorbrewer, r-bioc-org.hs.eg.db, r-bioc-genefilter, r-bioc-edger, r-cran-shiny, r-cran-shinydashboard, r-cran-ggplot2, r-cran-data.table, r-cran-plotly, r-cran-future, r-cran-promises, r-cran-shinyjs
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/GSVA/
Description: Gene Set Variation Analysis for microarray and RNA-seq data
Gene Set Variation Analysis (GSVA) is a non-parametric, unsupervised
method for estimating variation of gene set enrichment through the
samples of a expression data set. GSVA performs a change in coordinate
systems, transforming the data from a gene by sample matrix to a gene-
set by sample matrix, thereby allowing the evaluation of pathway
enrichment for each sample. This new matrix of GSVA enrichment scores
facilitates applying standard analytical methods like functional
enrichment, survival analysis, clustering, CNV-pathway analysis or cross-
tissue pathway analysis, in a pathway-centric manner.
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-rw-r--r-- root/root 919 2023-08-05 05:29 ./usr/lib/R/site-library/GSVA/help/AnIndex
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-rw-r--r-- root/root 1844 2023-08-05 05:29 ./usr/lib/R/site-library/GSVA/html/R.css
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drwxr-xr-x root/root 0 2023-08-05 05:29 ./usr/lib/R/site-library/GSVA/shinyApp/
-rw-r--r-- root/root 3059 2023-08-05 05:29 ./usr/lib/R/site-library/GSVA/shinyApp/argumentsDataModule.R
-rw-r--r-- root/root 599 2023-08-05 05:29 ./usr/lib/R/site-library/GSVA/shinyApp/closeModule.R
-rw-r--r-- root/root 978 2023-08-05 05:29 ./usr/lib/R/site-library/GSVA/shinyApp/downloadModule.R
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-rw-r--r-- root/root 997 2023-08-05 05:29 ./usr/lib/R/site-library/GSVA/shinyApp/global.R
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-rw-r--r-- root/root 1032 2023-08-05 05:29 ./usr/lib/R/site-library/GSVA/shinyApp/modalGSVAModule.R
-rw-r--r-- root/root 884 2023-08-05 05:29 ./usr/lib/R/site-library/GSVA/shinyApp/plot1_Module.R
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-rw-r--r-- root/root 396 2023-08-05 05:29 ./usr/share/doc/r-bioc-gsva/run-unit-test
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 3460
Build-Time: 42
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 143
Job: r-bioc-gsva_1.48.3+ds-1
Machine Architecture: arm64
Package: r-bioc-gsva
Package-Time: 194
Source-Version: 1.48.3+ds-1
Space: 3460
Status: successful
Version: 1.48.3+ds-1
--------------------------------------------------------------------------------
Finished at 2023-10-06T00:25:43Z
Build needed 00:03:14, 3460k disk space