r-bioc-eir →
1.36.0+ds-1 →
armhf → 2022-05-24 10:55:49
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| r-bioc-eir 1.36.0+ds-1 (armhf) Tue, 24 May 2022 10:33:40 +0000 |
+==============================================================================+
Package: r-bioc-eir
Version: 1.36.0+ds-1
Source Version: 1.36.0+ds-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-870f05df-3fac-4f2f-85f6-66aa2a62be16' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.0 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.9 MB]
Fetched 26.9 MB in 10s (2716 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-eir' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-eir.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-eir.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 70.4 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main r-bioc-eir 1.36.0+ds-1 (dsc) [2224 B]
Get:2 http://172.17.4.1/private bookworm-staging/main r-bioc-eir 1.36.0+ds-1 (tar) [62.3 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main r-bioc-eir 1.36.0+ds-1 (diff) [5936 B]
Fetched 70.4 kB in 0s (2214 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-eir-ehIcnj/r-bioc-eir-1.36.0+ds' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-eir-ehIcnj' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-b8Nub0/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-b8Nub0/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-b8Nub0/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-b8Nub0/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-b8Nub0/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-b8Nub0/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-b8Nub0/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-b8Nub0/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (9600 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 53 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-b8Nub0/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (73.9 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12621 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-chemminer, r-cran-dbi, r-cran-snow, r-cran-snowfall, r-cran-runit, r-cran-rcurl, r-cran-digest, r-bioc-biocgenerics, r-cran-rcppannoy
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-chemminer, r-cran-dbi, r-cran-snow, r-cran-snowfall, r-cran-runit, r-cran-rcurl, r-cran-digest, r-bioc-biocgenerics, r-cran-rcppannoy
dpkg-deb: building package 'sbuild-build-depends-r-bioc-eir-dummy' in '/<<BUILDDIR>>/resolver-b8Nub0/apt_archive/sbuild-build-depends-r-bioc-eir-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-eir-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-b8Nub0/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-b8Nub0/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-b8Nub0/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-b8Nub0/apt_archive ./ Sources [565 B]
Get:5 copy:/<<BUILDDIR>>/resolver-b8Nub0/apt_archive ./ Packages [643 B]
Fetched 2541 B in 0s (12.8 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-eir build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
cpp-11 dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz
file fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome
fonts-glyphicons-halflings g++-11 gcc-11 gcc-11-base gcc-12-base gettext
gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian
javascript-common libalgorithm-c3-perl libarchive-zip-perl libasan6
libatomic1 libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev
libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libbz2-dev
libcairo-gobject2 libcairo2 libcc1-0 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-11-dev
libgcc-s1 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-11-dev
libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu71
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js
libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions
libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-microplugin.js
libjs-popper.js libjs-sifter.js libjs-twitter-bootstrap-datepicker
liblapack-dev liblapack3 liblwp-mediatypes-perl liblzma-dev libmagic-mgc
libmagic1 libmd0 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libncursesw6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-8-0 libpcre2-dev libpcre2-posix3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16
libpsl5 libreadline-dev librsvg2-2 librtmp1 libscalar-list-utils-perl
libsigsegv2 libsm6 libssh2-1 libstdc++-11-dev libstdc++6
libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl
libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo6 libtk8.6
libtool libtry-tiny-perl libubsan1 libuchardet0 liburi-perl libuv1
libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db
node-bootstrap-sass node-html5shiv node-normalize.css openssl pkg-config
po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-chemminer
r-cran-base64enc r-cran-bh r-cran-bitops r-cran-bslib r-cran-cachem
r-cran-cli r-cran-colorspace r-cran-commonmark r-cran-crayon
r-cran-crosstalk r-cran-dbi r-cran-digest r-cran-dt r-cran-ellipsis
r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fs r-cran-ggplot2
r-cran-glue r-cran-gridextra r-cran-gtable r-cran-htmltools
r-cran-htmlwidgets r-cran-httpuv r-cran-isoband r-cran-jquerylib
r-cran-jsonlite r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval
r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix
r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-pillar
r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-promises r-cran-r6
r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppannoy
r-cran-rcurl r-cran-rjson r-cran-rlang r-cran-rsvg r-cran-runit r-cran-sass
r-cran-scales r-cran-shiny r-cran-snow r-cran-snowfall r-cran-sourcetools
r-cran-stringi r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite
r-cran-withr r-cran-xtable r-cran-yaml sgml-base shared-mime-info ucf unzip
x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc gcc-11-locales debtags dh-make
postgresql-client-common gcc-11-doc gettext-doc libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-11-doc libcoarrays-dev groff apache2
| lighttpd | httpd liblapack-doc libboost-doc libboost1.74-doc
libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev
libboost-context1.74-dev libboost-contract1.74-dev
libboost-coroutine1.74-dev libboost-date-time1.74-dev
libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev
libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
libboost-program-options1.74-dev libboost-python1.74-dev
libboost-random1.74-dev libboost-regex1.74-dev
libboost-serialization1.74-dev libboost-stacktrace1.74-dev
libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
icu-doc libjs-jquery-ui-docs liblzma-doc ncurses-doc libscalar-number-perl
readline-doc librsvg2-bin libstdc++-11-doc tcl8.6 tk8.6 libtool-doc gcj-jdk
libbusiness-isbn-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less
www-browser nodejs libmail-box-perl elpa-ess r-doc-info | r-doc-pdf
r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase
r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges r-bioc-delayedarray
r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy
r-bioc-deseq2 r-bioc-annotate r-cran-rsqlite r-cran-scatterplot3d
r-cran-gplots r-bioc-fmcsr r-cran-rpostgresql r-bioc-biocstyle r-cran-knitr
r-cran-rmarkdown r-cran-biocmanager r-cran-callr r-cran-covr r-cran-processx
r-cran-ps r-cran-rstudioapi r-cran-whoami r-cran-kernsmooth r-cran-kernlab
r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-dplyr r-cran-jpeg
r-cran-viridis r-cran-curl r-cran-testthat r-cran-xml2 r-cran-rmysql
r-cran-testit r-cran-unitizer r-cran-spelling r-cran-forcats r-cran-r.utils
r-cran-stringr r-cran-waldo r-cran-cairo r-cran-ragg r-cran-magick r-cran-sf
r-cran-httr r-cran-r.rsp r-cran-tidyverse r-cran-getopt r-cran-bit64
r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-survival
r-cran-units r-cran-vdiffr r-cran-purrr r-cran-roxygen2 r-cran-inline
r-cran-tinytest r-cran-xml r-cran-usethis r-cran-svglite r-cran-dichromat
r-cran-markdown r-cran-rmpi r-cran-rlecuyer r-cran-bench r-cran-blob
r-cran-brio r-cran-evaluate r-cran-hms r-cran-pkgbuild r-cran-pkgload
r-cran-tidyr r-cran-zeallot r-cran-plm r-cran-zoo sgml-base-doc
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs libclone-perl node-jquery
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix librsvg2-common
libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-rmarkdown
r-cran-thematic r-cran-knitr r-cran-testthat r-cran-curl r-cran-mockery
r-cran-covr r-cran-ragg r-cran-dplyr r-cran-hexbin r-cran-hmisc
r-cran-interp r-cran-mapproj r-cran-maps r-cran-maptools r-cran-multcomp
r-cran-quantreg r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr
r-cran-xml2 r-cran-markdown r-cran-sp r-cran-lubridate r-cran-future
r-cran-bit64 r-cran-hms r-cran-dygraphs r-cran-data.table r-cran-rsqlite
r-cran-mockr r-cran-generics r-cran-waldo libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome
fonts-glyphicons-halflings gettext gettext-base gfortran gfortran-11
groff-base icu-devtools intltool-debian javascript-common
libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.74-dev
libbrotli1 libbsd0 libbz2-dev libcairo-gobject2 libcairo2 libclass-c3-perl
libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4
libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common
libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu71
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js
libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions
libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-microplugin.js
libjs-popper.js libjs-sifter.js libjs-twitter-bootstrap-datepicker
liblapack-dev liblapack3 liblwp-mediatypes-perl liblzma-dev libmagic-mgc
libmagic1 libmd0 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libreadline-dev librsvg2-2 librtmp1 libscalar-list-utils-perl libsigsegv2
libsm6 libssh2-1 libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl
libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5
libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl
libuv1 libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 m4 man-db node-bootstrap-sass node-html5shiv
node-normalize.css openssl pkg-config po-debconf r-base-core r-base-dev
r-bioc-biocgenerics r-bioc-chemminer r-cran-base64enc r-cran-bh
r-cran-bitops r-cran-bslib r-cran-cachem r-cran-cli r-cran-colorspace
r-cran-commonmark r-cran-crayon r-cran-crosstalk r-cran-dbi r-cran-digest
r-cran-dt r-cran-ellipsis r-cran-fansi r-cran-farver r-cran-fastmap
r-cran-fs r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable
r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-isoband
r-cran-jquerylib r-cran-jsonlite r-cran-labeling r-cran-later r-cran-lattice
r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass
r-cran-matrix r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme
r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-promises
r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppannoy
r-cran-rcurl r-cran-rjson r-cran-rlang r-cran-rsvg r-cran-runit r-cran-sass
r-cran-scales r-cran-shiny r-cran-snow r-cran-snowfall r-cran-sourcetools
r-cran-stringi r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite
r-cran-withr r-cran-xtable r-cran-yaml sbuild-build-depends-r-bioc-eir-dummy
sgml-base shared-mime-info ucf unzip x11-common xauth xdg-utils zip
zlib1g-dev
The following packages will be upgraded:
cpp-11 g++-11 gcc-11 gcc-11-base gcc-12-base libasan6 libatomic1 libcc1-0
libgcc-11-dev libgcc-s1 libgomp1 libncursesw6 libpcre2-8-0 libstdc++-11-dev
libstdc++6 libtinfo6 libubsan1
17 upgraded, 270 newly installed, 0 to remove and 36 not upgraded.
Need to get 192 MB of archives.
After this operation, 528 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-b8Nub0/apt_archive ./ sbuild-build-depends-r-bioc-eir-dummy 0.invalid.0 [932 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf sgml-base all 1.30 [15.1 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 12.1.0-2+rpi1 [8196 B]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 12.1.0-2+rpi1 [860 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12.1.0-2+rpi1 [207 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 12.1.0-2+rpi1 [504 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 12.1.0-2+rpi1 [95.4 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 12.1.0-2+rpi1 [32.1 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 12.1.0-2+rpi1 [36.1 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libtinfo6 armhf 6.3+20220423-2 [337 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libncursesw6 armhf 6.3+20220423-2 [104 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-8-0 armhf 10.40-1 [221 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38-4 [137 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-1 [33.7 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-1 [1362 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 1.1.1o-1 [817 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-6 [171 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-6 [510 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libasan6 armhf 11.3.0-1+rpi1 [1946 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf g++-11 armhf 11.3.0-1+rpi1 [7923 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf gcc-11 armhf 11.3.0-1+rpi1 [14.0 MB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-11-dev armhf 11.3.0-1+rpi1 [1969 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libgcc-11-dev armhf 11.3.0-1+rpi1 [698 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf cpp-11 armhf 11.3.0-1+rpi1 [7080 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf gcc-11-base armhf 11.3.0-1+rpi1 [209 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.7.1 [195 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-1 [175 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-6 [1214 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.7.1 [1071 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf unzip armhf 6.0-26 [151 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-1 [108 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.8-1 [84.1 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-5 [272 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-2 [352 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.4 [281 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.4 [331 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.6-1 [109 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.7.5-1 [308 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.5-1 [706 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.14-3 [110 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-5 [602 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.47.0-1 [65.0 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3 [161 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.83.0-1 [316 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.72.1-1 [1231 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.1.0-2+rpi1 [238 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-1 [1587 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.4 [416 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1+b1 [1420 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.50.7+ds-1 [214 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.50.7+ds-1 [70.1 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.50.7+ds-1 [60.1 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.12+dfsg-1 [906 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.10-2 [55.4 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2 [237 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.3.0-8 [273 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.4-1 [50.2 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.12-1 [680 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.1-1 [159 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf r-base-core armhf 4.2.0-1 [27.7 MB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-11-dev armhf 11.3.0-1+rpi1 [280 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf gfortran-11 armhf 11.3.0-1+rpi1 [7580 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf gfortran armhf 4:11.2.0-2+rpi1 [1428 B]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.1-1 [114 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.1-1 [2846 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3+20220423-2 [79.6 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libncurses-dev armhf 6.3+20220423-2 [289 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.3+20220423-2 [940 B]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libreadline-dev armhf 8.1.2-1.2 [120 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.2-1 [261 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.2-1 [74.7 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.40-1 [208 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.40-1 [199 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-posix3 armhf 10.40-1 [53.4 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.40-1 [637 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-14 [239 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-14 [232 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-14 [150 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-14 [569 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4 [183 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.37-5 [272 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5 [26.8 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2.1 [218 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 71.1-3 [177 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 71.1-3 [9799 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf xauth armhf 1:1.1.1-1 [36.9 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf r-base-dev all 4.2.0-1 [4488 B]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libfile-which-perl all 1.27-1 [17.3 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libswitch-perl all 2.17-2.1 [20.0 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf liburi-perl all 5.10-1 [91.0 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf libhttp-message-perl all 6.36-1 [80.6 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-1+b2 [24.5 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-1.1 [10.8 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-1+b5 [10.9 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.7 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b3 [15.7 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-1+b4 [24.6 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.31-1 [24.2 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-1.1 [12.4 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf libscalar-list-utils-perl armhf 1:1.62-1 [61.6 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-1+b5 [14.2 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-1.1 [8312 B]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-1 [11.7 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-1 [22.9 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf libmro-compat-perl all 0.15-1 [12.6 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-1 [11.5 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-1.1 [10.2 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-1.1 [7156 B]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-1+b2 [13.2 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-1.1 [16.6 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.29-1+b3 [18.4 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2200-1+b1 [802 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.62-1+b4 [43.1 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-1+b4 [11.6 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.83.0-1 [313 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-7+b2 [60.5 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-2 [12.5 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-2 [164 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf javascript-common all 11+nmu1 [6260 B]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-14+b2 [9533 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf libboost-dev armhf 1.74.0.3+b4 [4824 B]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf libcairo-gobject2 armhf 1.16.0-5 [124 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf libgdk-pixbuf2.0-common all 2.42.8+dfsg-1 [315 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf shared-mime-info armhf 2.2-1 [726 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf libgdk-pixbuf-2.0-0 armhf 2.42.8+dfsg-1 [130 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf libjs-bootstrap all 3.4.1+dfsg-2 [173 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf libjs-popper.js all 1.16.1+ds-5 [52.0 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf libjs-bootstrap4 all 4.6.1+dfsg1-1 [520 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf libjs-d3 all 3.5.17-4 [132 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf libjs-es5-shim all 4.6.7-1 [47.3 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [316 kB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB]
Get:205 http://172.17.4.1/private bookworm-staging/main armhf libjs-sifter.js all 0.6.0+dfsg-2 [12.2 kB]
Get:206 http://172.17.4.1/private bookworm-staging/main armhf libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B]
Get:207 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB]
Get:208 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.13.1+dfsg-1 [250 kB]
Get:209 http://172.17.4.1/private bookworm-staging/main armhf libjs-json all 0~20210531+~1.0.8-1 [20.7 kB]
Get:210 http://172.17.4.1/private bookworm-staging/main armhf libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB]
Get:211 http://172.17.4.1/private bookworm-staging/main armhf librsvg2-2 armhf 2.52.5+dfsg-3 [2211 kB]
Get:212 http://172.17.4.1/private bookworm-staging/main armhf libuv1 armhf 1.44.1-2+rpi1 [124 kB]
Get:213 http://172.17.4.1/private bookworm-staging/main armhf node-bootstrap-sass all 3.4.3-2 [186 kB]
Get:214 http://172.17.4.1/private bookworm-staging/main armhf node-html5shiv all 3.7.3+dfsg-4 [13.3 kB]
Get:215 http://172.17.4.1/private bookworm-staging/main armhf node-normalize.css all 8.0.1-5 [12.7 kB]
Get:216 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocgenerics all 0.42.0-1 [589 kB]
Get:217 http://172.17.4.1/private bookworm-staging/main armhf r-cran-littler armhf 0.3.15-1 [92.5 kB]
Get:218 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rjson armhf 0.2.21-1 [137 kB]
Get:219 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:220 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcurl armhf 1.98-1.6-1 [795 kB]
Get:221 http://172.17.4.1/private bookworm-staging/main armhf r-cran-dbi all 1.1.2-1 [665 kB]
Get:222 http://172.17.4.1/private bookworm-staging/main armhf r-cran-digest armhf 0.6.29-1 [183 kB]
Get:223 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgkitten all 0.2.2-2 [27.0 kB]
Get:224 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcpp armhf 1.0.8.3-1 [2072 kB]
Get:225 http://172.17.4.1/private bookworm-staging/main armhf r-cran-glue armhf 1.6.2-1 [152 kB]
Get:226 http://172.17.4.1/private bookworm-staging/main armhf r-cran-gtable all 0.3.0+dfsg-2 [163 kB]
Get:227 http://172.17.4.1/private bookworm-staging/main armhf r-cran-isoband armhf 0.2.5-1 [1756 kB]
Get:228 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mass armhf 7.3-57-1 [1113 kB]
Get:229 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lattice armhf 0.20-45-3 [1176 kB]
Get:230 http://172.17.4.1/private bookworm-staging/main armhf r-cran-nlme armhf 3.1.157-1 [2258 kB]
Get:231 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrix armhf 1.4-1-1 [4290 kB]
Get:232 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mgcv armhf 1.8-40-1 [2993 kB]
Get:233 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rlang armhf 1.0.2-1 [1577 kB]
Get:234 http://172.17.4.1/private bookworm-staging/main armhf r-cran-farver armhf 2.1.0-1 [1394 kB]
Get:235 http://172.17.4.1/private bookworm-staging/main armhf r-cran-labeling all 0.4.2-1 [62.7 kB]
Get:236 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lifecycle all 1.0.1-1 [103 kB]
Get:237 http://172.17.4.1/private bookworm-staging/main armhf r-cran-colorspace armhf 2.0-3+dfsg-1 [1697 kB]
Get:238 http://172.17.4.1/private bookworm-staging/main armhf r-cran-munsell all 0.5.0-2 [236 kB]
Get:239 http://172.17.4.1/private bookworm-staging/main armhf r-cran-r6 all 2.5.1-1 [105 kB]
Get:240 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB]
Get:241 http://172.17.4.1/private bookworm-staging/main armhf r-cran-viridislite all 0.4.0-2 [1298 kB]
Get:242 http://172.17.4.1/private bookworm-staging/main armhf r-cran-scales all 1.1.1-1 [557 kB]
Get:243 http://172.17.4.1/private bookworm-staging/main armhf r-cran-ellipsis armhf 0.3.2-2 [35.1 kB]
Get:244 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fansi armhf 1.0.3-1 [611 kB]
Get:245 http://172.17.4.1/private bookworm-staging/main armhf r-cran-magrittr armhf 2.0.3-1 [200 kB]
Get:246 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cli armhf 3.3.0-1 [1114 kB]
Get:247 http://172.17.4.1/private bookworm-staging/main armhf r-cran-crayon all 1.5.1-1 [162 kB]
Get:248 http://172.17.4.1/private bookworm-staging/main armhf r-cran-utf8 armhf 1.2.2-1 [129 kB]
Get:249 http://172.17.4.1/private bookworm-staging/main armhf r-cran-vctrs armhf 0.4.1-2 [1241 kB]
Get:250 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pillar all 1.7.0+dfsg-1 [440 kB]
Get:251 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:252 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tibble armhf 3.1.6+dfsg-1 [460 kB]
Get:253 http://172.17.4.1/private bookworm-staging/main armhf r-cran-withr all 2.5.0-1 [236 kB]
Get:254 http://172.17.4.1/private bookworm-staging/main armhf r-cran-ggplot2 all 3.3.6+dfsg-1 [3213 kB]
Get:255 http://172.17.4.1/private bookworm-staging/main armhf r-cran-gridextra all 2.3-3 [1024 kB]
Get:256 http://172.17.4.1/private bookworm-staging/main armhf r-cran-png armhf 0.1-7-4 [39.9 kB]
Get:257 http://172.17.4.1/private bookworm-staging/main armhf r-cran-base64enc armhf 0.1-3-3 [27.8 kB]
Get:258 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fastmap armhf 1.1.0-1 [63.1 kB]
Get:259 http://172.17.4.1/private bookworm-staging/main armhf r-cran-htmltools armhf 0.5.2-1 [352 kB]
Get:260 http://172.17.4.1/private bookworm-staging/main armhf r-cran-jsonlite armhf 1.8.0+dfsg-1 [433 kB]
Get:261 http://172.17.4.1/private bookworm-staging/main armhf r-cran-yaml armhf 2.3.5-1 [93.4 kB]
Get:262 http://172.17.4.1/private bookworm-staging/main armhf r-cran-htmlwidgets all 1.5.4+dfsg-1 [124 kB]
Get:263 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lazyeval armhf 0.2.2-1+b1 [141 kB]
Get:264 http://172.17.4.1/private bookworm-staging/main armhf r-cran-later armhf 1.3.0+dfsg-1 [108 kB]
Get:265 http://172.17.4.1/private bookworm-staging/main armhf r-cran-promises armhf 1.2.0.1+dfsg-1 [270 kB]
Get:266 http://172.17.4.1/private bookworm-staging/main armhf r-cran-httpuv armhf 1.6.5+dfsg-1 [444 kB]
Get:267 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mime armhf 0.12-1 [35.6 kB]
Get:268 http://172.17.4.1/private bookworm-staging/main armhf r-cran-xtable all 1:1.8-4-2 [689 kB]
Get:269 http://172.17.4.1/private bookworm-staging/main armhf r-cran-sourcetools armhf 0.1.7-3 [43.3 kB]
Get:270 http://172.17.4.1/private bookworm-staging/main armhf r-cran-commonmark armhf 1.8.0-1 [97.7 kB]
Get:271 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fs armhf 1.5.2+dfsg-1 [224 kB]
Get:272 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rappdirs armhf 0.3.3-1 [47.3 kB]
Get:273 http://172.17.4.1/private bookworm-staging/main armhf r-cran-sass armhf 0.4.1+dfsg-1 [821 kB]
Get:274 http://172.17.4.1/private bookworm-staging/main armhf r-cran-jquerylib all 0.1.4+dfsg-3 [13.0 kB]
Get:275 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bslib all 0.3.1+dfsg-2 [3749 kB]
Get:276 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cachem armhf 1.0.6-1 [70.5 kB]
Get:277 http://172.17.4.1/private bookworm-staging/main armhf r-cran-shiny all 1.6.0+dfsg-1 [3666 kB]
Get:278 http://172.17.4.1/private bookworm-staging/main armhf r-cran-crosstalk all 1.2.0+dfsg-1 [171 kB]
Get:279 http://172.17.4.1/private bookworm-staging/main armhf r-cran-dt all 0.23+dfsg-1 [231 kB]
Get:280 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rsvg armhf 2.2.0-1 [244 kB]
Get:281 http://172.17.4.1/private bookworm-staging/main armhf r-cran-stringi armhf 1.7.6-1+b1 [774 kB]
Get:282 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bh all 1.74.0-2 [5524 B]
Get:283 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-chemminer armhf 3.48.0+dfsg-1 [1163 kB]
Get:284 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcppannoy armhf 0.0.19-1 [358 kB]
Get:285 http://172.17.4.1/private bookworm-staging/main armhf r-cran-runit all 0.4.32-3 [294 kB]
Get:286 http://172.17.4.1/private bookworm-staging/main armhf r-cran-snow all 1:0.4.4-2 [98.9 kB]
Get:287 http://172.17.4.1/private bookworm-staging/main armhf r-cran-snowfall all 1.84-6.1-3 [415 kB]
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Unpacking r-cran-bslib (0.3.1+dfsg-2) ...
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Unpacking r-cran-cachem (1.0.6-1) ...
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Unpacking r-cran-bh (1.74.0-2) ...
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Setting up libexpat1:armhf (2.4.8-1) ...
Setting up libpcrecpp0v5:armhf (2:8.39-14) ...
Setting up libpipeline1:armhf (1.5.6-1) ...
Setting up libjs-json (0~20210531+~1.0.8-1) ...
Setting up javascript-common (11+nmu1) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up libpixman-1-0:armhf (0.40.0-1) ...
Setting up libicu71:armhf (71.1-3) ...
Setting up gcc-11-base:armhf (11.3.0-1+rpi1) ...
Setting up libfile-which-perl (1.27-1) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up bsdextrautils (2.38-4) ...
Setting up libpcre16-3:armhf (2:8.39-14) ...
Setting up libdynaloader-functions-perl (0.003-1.1) ...
Setting up libdatrie1:armhf (0.2.13-2+b2) ...
Setting up libjs-popper.js (1.16.1+ds-5) ...
Setting up libmagic-mgc (1:5.41-4) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-1+b4) ...
Setting up libglib2.0-0:armhf (2.72.1-1) ...
No schema files found: doing nothing.
Setting up libjs-sifter.js (0.6.0+dfsg-2) ...
Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-2) ...
Setting up libscalar-list-utils-perl (1:1.62-1) ...
Setting up unzip (6.0-26) ...
Setting up libdebhelper-perl (13.7.1) ...
Setting up libbrotli1:armhf (1.0.9-2+b2) ...
Setting up liblwp-mediatypes-perl (6.04-1) ...
Setting up libgdk-pixbuf2.0-common (2.42.8+dfsg-1) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libtry-tiny-perl (0.31-1) ...
Setting up node-html5shiv (3.7.3+dfsg-4) ...
Setting up libnghttp2-14:armhf (1.47.0-1) ...
Setting up libmagic1:armhf (1:5.41-4) ...
Setting up libdeflate0:armhf (1.10-2) ...
Setting up gettext-base (0.21-6) ...
Setting up libencode-locale-perl (1.05-1.1) ...
Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ...
Setting up file (1:5.41-4) ...
Setting up libgomp1:armhf (12.1.0-2+rpi1) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libpcre2-16-0:armhf (10.40-1) ...
Setting up libsub-install-perl (0.928-1.1) ...
Setting up libasan6:armhf (11.3.0-1+rpi1) ...
Setting up libjs-es5-shim (4.6.7-1) ...
Setting up zip (3.0-12) ...
Setting up libpackage-stash-xs-perl (0.29-1+b3) ...
Setting up autotools-dev (20220109.1) ...
Setting up libpcre2-32-0:armhf (10.40-1) ...
Setting up libuv1:armhf (1.44.1-2+rpi1) ...
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Setting up libjpeg62-turbo:armhf (1:2.1.2-1) ...
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Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.3+20220423-2) ...
Setting up libsigsegv2:armhf (2.14-1) ...
Setting up libfribidi0:armhf (1.0.8-2.1) ...
Setting up libjs-d3 (3.5.17-4) ...
Setting up libpng16-16:armhf (1.6.37-5) ...
Setting up libpcre32-3:armhf (2:8.39-14) ...
Setting up libatomic1:armhf (12.1.0-2+rpi1) ...
Setting up libvariable-magic-perl (0.62-1+b4) ...
Setting up libio-html-perl (1.004-3) ...
Setting up libtcl8.6:armhf (8.6.12+dfsg-1) ...
Setting up autopoint (0.21-6) ...
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Setting up libgfortran5:armhf (12.1.0-2+rpi1) ...
Setting up libsub-exporter-progressive-perl (0.001013-1) ...
Setting up libwebp7:armhf (1.2.2-2) ...
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Setting up libubsan1:armhf (12.1.0-2+rpi1) ...
Setting up libsub-name-perl (0.26-1+b2) ...
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Setting up libpcre2-posix3:armhf (10.40-1) ...
Setting up libgcc-11-dev:armhf (11.3.0-1+rpi1) ...
Setting up libmd0:armhf (1.0.4-1) ...
Setting up libjs-highlight.js (9.18.5+dfsg1-2) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
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Setting up libssh2-1:armhf (1.10.0-3) ...
Setting up node-bootstrap-sass (3.4.3-2) ...
Setting up sgml-base (1.30) ...
Setting up libdevel-stacktrace-perl (2.0400-1) ...
Setting up libtiff5:armhf (4.3.0-8) ...
Setting up libjs-bootstrap4 (4.6.1+dfsg1-1) ...
Setting up libjs-jquery (3.6.0+dfsg+~3.5.13-1) ...
Setting up openssl (1.1.1o-1) ...
Setting up libbsd0:armhf (0.11.6-1) ...
Setting up node-normalize.css (8.0.1-5) ...
Setting up libelf1:armhf (0.187-1) ...
Setting up libicu-dev:armhf (71.1-3) ...
Setting up libxml2:armhf (2.9.14+dfsg-1) ...
Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up libcc1-0:armhf (12.1.0-2+rpi1) ...
Setting up liburi-perl (5.10-1) ...
Setting up dctrl-tools (2.24-3) ...
Setting up libjs-bootstrap (3.4.1+dfsg-2) ...
Setting up libbz2-dev:armhf (1.0.8-5) ...
Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
Setting up libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ...
Setting up libfile-stripnondeterminism-perl (1.13.0-1) ...
Setting up cpp-11 (11.3.0-1+rpi1) ...
Setting up libpaper1:armhf (1.1.28) ...
Creating config file /etc/papersize with new version
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.05-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
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Setting up libxcb1:armhf (1.14-3) ...
Setting up gettext (0.21-6) ...
Setting up libpcre2-dev:armhf (10.40-1) ...
Setting up libtool (2.4.7-4) ...
Setting up libxcb-render0:armhf (1.14-3) ...
Setting up libpcre3-dev:armhf (2:8.39-14) ...
Setting up libgfortran-11-dev:armhf (11.3.0-1+rpi1) ...
Setting up fontconfig-config (2.13.1-4.4) ...
Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
Setting up libpng-dev:armhf (1.6.37-5) ...
Setting up libjpeg-dev:armhf (1:2.1.2-1) ...
Setting up m4 (1.4.18-5) ...
Setting up libcurl3-gnutls:armhf (7.83.0-1) ...
Setting up libxcb-shm0:armhf (1.14-3) ...
Setting up libpaper-utils (1.1.28) ...
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Setting up libreadline-dev:armhf (8.1.2-1.2) ...
Setting up libdevel-callchecker-perl (0.008-1+b3) ...
Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libthai0:armhf (0.1.29-1) ...
Setting up ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
Setting up libblas3:armhf (3.10.1-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libjs-jquery-ui (1.13.1+dfsg-1) ...
Setting up libfreetype6:armhf (2.12.1+dfsg-2) ...
Setting up shared-mime-info (2.2-1) ...
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Setting up dwz (0.14-1) ...
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Setting up groff-base (1.22.4-8) ...
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Setting up libharfbuzz0b:armhf (2.7.4-1+b1) ...
Setting up libgdk-pixbuf-2.0-0:armhf (2.42.8+dfsg-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.4) ...
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Setting up libsm6:armhf (2:1.2.3-1) ...
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Setting up libblas-dev:armhf (3.10.1-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up libsub-exporter-perl (0.988-1) ...
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Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up fontconfig (2.13.1-4.4) ...
Regenerating fonts cache... done.
Setting up liblapack3:armhf (3.10.1-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libboost1.74-dev:armhf (1.74.0-14+b2) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up g++-11 (11.3.0-1+rpi1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl (0.015-1+b4) ...
Setting up libpango-1.0-0:armhf (1.50.7+ds-1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl (4.17-7+b2) ...
Setting up man-db (2.10.2-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libcairo2:armhf (1.16.0-5) ...
Setting up dh-autoreconf (20) ...
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up liblapack-dev:armhf (3.10.1-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdist-checkconflicts-perl (0.11-1.1) ...
Setting up libxt6:armhf (1:1.2.1-1) ...
Setting up gfortran-11 (11.3.0-1+rpi1) ...
Setting up xauth (1:1.1.1-1) ...
Setting up libcairo-gobject2:armhf (1.16.0-5) ...
Setting up libboost-dev:armhf (1.74.0.3+b4) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libpangoft2-1.0-0:armhf (1.50.7+ds-1) ...
Setting up libpangocairo-1.0-0:armhf (1.50.7+ds-1) ...
Setting up r-cran-bh (1.74.0-2) ...
Setting up libxft2:armhf (2.3.4-1) ...
Setting up libmodule-implementation-perl (0.09-1.1) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libtk8.6:armhf (8.6.12-1) ...
Setting up debhelper (13.7.1) ...
Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ...
Setting up gfortran (4:11.2.0-2+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libclass-load-perl (0.25-1) ...
Setting up librsvg2-2:armhf (2.52.5+dfsg-3) ...
Setting up r-base-core (4.2.0-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.1-1) ...
Setting up r-cran-gtable (0.3.0+dfsg-2) ...
Setting up r-cran-labeling (0.4.2-1) ...
Setting up r-cran-sourcetools (0.1.7-3) ...
Setting up r-cran-rsvg (2.2.0-1) ...
Setting up r-cran-lattice (0.20-45-3) ...
Setting up r-cran-nlme (3.1.157-1) ...
Setting up r-cran-farver (2.1.0-1) ...
Setting up libpackage-deprecationmanager-perl (0.17-1.1) ...
Setting up r-cran-viridislite (0.4.0-2) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-1+b5) ...
Setting up r-cran-lazyeval (0.2.2-1+b1) ...
Setting up r-cran-commonmark (1.8.0-1) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-cran-pkgkitten (0.2.2-2) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up r-cran-magrittr (2.0.3-1) ...
Setting up r-cran-rappdirs (0.3.3-1) ...
Setting up r-cran-littler (0.3.15-1) ...
Setting up r-cran-fs (1.5.2+dfsg-1) ...
Setting up r-cran-rcpp (1.0.8.3-1) ...
Setting up r-bioc-biocgenerics (0.42.0-1) ...
Setting up r-cran-rlang (1.0.2-1) ...
Setting up r-base-dev (4.2.0-1) ...
Setting up r-cran-withr (2.5.0-1) ...
Setting up r-cran-mime (0.12-1) ...
Setting up libmoose-perl:armhf (2.2200-1+b1) ...
Setting up r-cran-base64enc (0.1-3-3) ...
Setting up r-cran-digest (0.6.29-1) ...
Setting up r-cran-yaml (2.3.5-1) ...
Setting up r-cran-dbi (1.1.2-1) ...
Setting up r-cran-fansi (1.0.3-1) ...
Setting up r-cran-mass (7.3-57-1) ...
Setting up r-cran-snow (1:0.4.4-2) ...
Setting up r-cran-glue (1.6.2-1) ...
Setting up r-cran-xtable (1:1.8-4-2) ...
Setting up r-cran-cli (3.3.0-1) ...
Setting up r-cran-lifecycle (1.0.1-1) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-cran-fastmap (1.1.0-1) ...
Setting up r-cran-png (0.1-7-4) ...
Setting up r-cran-jsonlite (1.8.0+dfsg-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-utf8 (1.2.2-1) ...
Setting up r-cran-colorspace (2.0-3+dfsg-1) ...
Setting up r-cran-snowfall (1.84-6.1-3) ...
Setting up r-cran-stringi (1.7.6-1+b1) ...
Setting up r-cran-rcolorbrewer (1.1-3-1) ...
Setting up r-cran-isoband (0.2.5-1) ...
Setting up r-cran-runit (0.4.32-3) ...
Setting up r-cran-gridextra (2.3-3) ...
Setting up libnamespace-clean-perl (0.27-1) ...
Setting up r-cran-later (1.3.0+dfsg-1) ...
Setting up r-cran-matrix (1.4-1-1) ...
Setting up r-cran-htmltools (0.5.2-1) ...
Setting up r-cran-mgcv (1.8-40-1) ...
Setting up r-cran-cachem (1.0.6-1) ...
Setting up r-cran-sass (0.4.1+dfsg-1) ...
Setting up r-cran-rjson (0.2.21-1) ...
Setting up r-cran-rcurl (1.98-1.6-1) ...
Setting up r-cran-vctrs (0.4.1-2) ...
Setting up r-cran-ellipsis (0.3.2-2) ...
Setting up r-cran-rcppannoy (0.0.19-1) ...
Setting up libwww-curl-simple-perl (0.100191-2) ...
Setting up r-cran-munsell (0.5.0-2) ...
Setting up r-cran-jquerylib (0.1.4+dfsg-3) ...
Setting up r-cran-htmlwidgets (1.5.4+dfsg-1) ...
Setting up r-cran-bslib (0.3.1+dfsg-2) ...
Setting up r-cran-scales (1.1.1-1) ...
Setting up r-cran-promises (1.2.0.1+dfsg-1) ...
Setting up dh-r (20210816) ...
Setting up r-cran-pillar (1.7.0+dfsg-1) ...
Setting up r-cran-httpuv (1.6.5+dfsg-1) ...
Setting up r-cran-tibble (3.1.6+dfsg-1) ...
Setting up r-cran-shiny (1.6.0+dfsg-1) ...
Setting up r-cran-crosstalk (1.2.0+dfsg-1) ...
Setting up r-cran-dt (0.23+dfsg-1) ...
Setting up r-cran-ggplot2 (3.3.6+dfsg-1) ...
Setting up r-bioc-chemminer (3.48.0+dfsg-1) ...
Setting up sbuild-build-depends-r-bioc-eir-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.33-7+rpi1) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-163-generic armhf (armv8l)
Toolchain package versions: binutils_2.38-3+rpi1 dpkg-dev_1.21.7+rpi1 g++-11_11.3.0-1+rpi1 gcc-11_11.3.0-1+rpi1 libc6-dev_2.33-7+rpi1 libstdc++-11-dev_11.3.0-1+rpi1 libstdc++6_12.1.0-2+rpi1 linux-libc-dev_5.16.18-1+rpi1
Package versions: adduser_3.121 apt_2.4.5 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.5.52 bash_5.1-6 binutils_2.38-3+rpi1 binutils-arm-linux-gnueabihf_2.38-3+rpi1 binutils-common_2.38-3+rpi1 bsdextrautils_2.38-4 bsdutils_1:2.38-4 build-essential_12.9 bzip2_1.0.8-5 ca-certificates_20211016 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.3.0-1+rpi1 dash_0.5.11+git20210903+057cd650a4ed-8 dctrl-tools_2.24-3 debconf_1.5.79 debhelper_13.7.1 debianutils_5.7-0.1 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-3+b1 dpkg_1.21.7+rpi1 dpkg-dev_1.21.7+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.28-1 file_1:5.41-4 findutils_4.9.0-2 fontconfig_2.13.1-4.4 fontconfig-config_2.13.1-4.4 fonts-dejavu-core_2.37-2 fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1 fonts-glyphicons-halflings_1.009~3.4.1+dfsg-2 g++_4:11.2.0-2+rpi1 g++-11_11.3.0-1+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.3.0-1+rpi1 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libjs-bootstrap4_4.6.1+dfsg1-1 libjs-d3_3.5.17-4 libjs-es5-shim_4.6.7-1 libjs-highlight.js_9.18.5+dfsg1-2 libjs-jquery_3.6.0+dfsg+~3.5.13-1 libjs-jquery-datatables_1.11.5+dfsg-2 libjs-jquery-datatables-extensions_0.0+git20150910.28fd64e+dfsg-5 libjs-jquery-selectize.js_0.12.6+dfsg-1.1 libjs-jquery-ui_1.13.1+dfsg-1 libjs-json_0~20210531+~1.0.8-1 libjs-microplugin.js_0.0.3+dfsg-1.1 libjs-popper.js_1.16.1+ds-5 libjs-sifter.js_0.6.0+dfsg-2 libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1 libk5crypto3_1.19.2-2+b2 libkeyutils1_1.6.1-3+rpi1 libkrb5-3_1.19.2-2+b2 libkrb5support0_1.19.2-2+b2 libksba8_1.6.0-2 liblapack-dev_3.10.1-1 liblapack3_3.10.1-1 libldap-2.5-0_2.5.11+dfsg-1+rpi1 liblwp-mediatypes-perl_6.04-1 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2.1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-1 libmodule-implementation-perl_0.09-1.1 libmodule-runtime-conflicts-perl_0.003-1.1 libmodule-runtime-perl_0.016-1 libmoose-perl_2.2200-1+b1 libmount1_2.38-4 libmpc3_1.2.1-2 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passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-4 perl-base_5.34.0-4 perl-modules-5.34_5.34.0-4 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 r-base-core_4.2.0-1 r-base-dev_4.2.0-1 r-bioc-biocgenerics_0.42.0-1 r-bioc-chemminer_3.48.0+dfsg-1 r-cran-base64enc_0.1-3-3 r-cran-bh_1.74.0-2 r-cran-bitops_1.0-7-1 r-cran-bslib_0.3.1+dfsg-2 r-cran-cachem_1.0.6-1 r-cran-cli_3.3.0-1 r-cran-colorspace_2.0-3+dfsg-1 r-cran-commonmark_1.8.0-1 r-cran-crayon_1.5.1-1 r-cran-crosstalk_1.2.0+dfsg-1 r-cran-dbi_1.1.2-1 r-cran-digest_0.6.29-1 r-cran-dt_0.23+dfsg-1 r-cran-ellipsis_0.3.2-2 r-cran-fansi_1.0.3-1 r-cran-farver_2.1.0-1 r-cran-fastmap_1.1.0-1 r-cran-fs_1.5.2+dfsg-1 r-cran-ggplot2_3.3.6+dfsg-1 r-cran-glue_1.6.2-1 r-cran-gridextra_2.3-3 r-cran-gtable_0.3.0+dfsg-2 r-cran-htmltools_0.5.2-1 r-cran-htmlwidgets_1.5.4+dfsg-1 r-cran-httpuv_1.6.5+dfsg-1 r-cran-isoband_0.2.5-1 r-cran-jquerylib_0.1.4+dfsg-3 r-cran-jsonlite_1.8.0+dfsg-1 r-cran-labeling_0.4.2-1 r-cran-later_1.3.0+dfsg-1 r-cran-lattice_0.20-45-3 r-cran-lazyeval_0.2.2-1+b1 r-cran-lifecycle_1.0.1-1 r-cran-littler_0.3.15-1 r-cran-magrittr_2.0.3-1 r-cran-mass_7.3-57-1 r-cran-matrix_1.4-1-1 r-cran-mgcv_1.8-40-1 r-cran-mime_0.12-1 r-cran-munsell_0.5.0-2 r-cran-nlme_3.1.157-1 r-cran-pillar_1.7.0+dfsg-1 r-cran-pkgconfig_2.0.3-2 r-cran-pkgkitten_0.2.2-2 r-cran-png_0.1-7-4 r-cran-promises_1.2.0.1+dfsg-1 r-cran-r6_2.5.1-1 r-cran-rappdirs_0.3.3-1 r-cran-rcolorbrewer_1.1-3-1 r-cran-rcpp_1.0.8.3-1 r-cran-rcppannoy_0.0.19-1 r-cran-rcurl_1.98-1.6-1 r-cran-rjson_0.2.21-1 r-cran-rlang_1.0.2-1 r-cran-rsvg_2.2.0-1 r-cran-runit_0.4.32-3 r-cran-sass_0.4.1+dfsg-1 r-cran-scales_1.1.1-1 r-cran-shiny_1.6.0+dfsg-1 r-cran-snow_1:0.4.4-2 r-cran-snowfall_1.84-6.1-3 r-cran-sourcetools_0.1.7-3 r-cran-stringi_1.7.6-1+b1 r-cran-tibble_3.1.6+dfsg-1 r-cran-utf8_1.2.2-1 r-cran-vctrs_0.4.1-2 r-cran-viridislite_0.4.0-2 r-cran-withr_2.5.0-1 r-cran-xtable_1:1.8-4-2 r-cran-yaml_2.3.5-1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-eir-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 shared-mime-info_2.2-1 sysvinit-utils_3.03-1 tar_1.34+dfsg-1 tzdata_2022a-1 ucf_3.0043 unzip_6.0-26 util-linux_2.37.3-1 x11-common_1:7.7+23 xauth_1:1.1.1-1 xdg-utils_1.1.3-4.1 xz-utils_5.2.5-2.1 zip_3.0-12 zlib1g_1:1.2.11.dfsg-4 zlib1g-dev_1:1.2.11.dfsg-4
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.qE39g6ga/trustedkeys.kbx': General error
gpgv: Signature made Fri May 13 10:11:00 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./r-bioc-eir_1.36.0+ds-1.dsc
dpkg-source: info: extracting r-bioc-eir in /<<BUILDDIR>>/r-bioc-eir-1.36.0+ds
dpkg-source: info: unpacking r-bioc-eir_1.36.0+ds.orig.tar.xz
dpkg-source: info: unpacking r-bioc-eir_1.36.0+ds-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying i386.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-870f05df-3fac-4f2f-85f6-66aa2a62be16
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-eir
dpkg-buildpackage: info: source version 1.36.0+ds-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-eir-1.36.0+ds'
dh_auto_clean
rm -f inst/doc/eiR.html vignettes/header.html
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-eir-1.36.0+ds'
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-eir/ -a -O--buildsystem=R
I: R packages needed for DEP8: rsqlite
I: R Package: eiR Version: 1.36.0
I: Building using R version 4.2.0-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Fri, 13 May 2022 12:06:22 +0200
mkdir -p /<<BUILDDIR>>/r-bioc-eir-1.36.0\+ds/debian/r-bioc-eir/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-eir-1.36.0\+ds/debian/r-bioc-eir/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 13 May 2022 12:06:22 +0200'"
* installing *source* package 'eiR' ...
** using staged installation
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-eir-1.36.0+ds/src'
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-2bkVJg/r-base-4.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c optimFunctions.cc -o optimFunctions.o
g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-z,relro -o eiR.so optimFunctions.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-eir-1.36.0+ds/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-eir-1.36.0+ds/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-eir-1.36.0+ds/src'
installing to /<<BUILDDIR>>/r-bioc-eir-1.36.0+ds/debian/r-bioc-eir/usr/lib/R/site-library/00LOCK-r-bioc-eir-1.36.0+ds/00new/eiR/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
code for methods in class "Rcpp_AnnoyAngular" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_AnnoyAngular" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_AnnoyEuclidean" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_AnnoyEuclidean" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_AnnoyManhattan" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_AnnoyManhattan" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_AnnoyHamming" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_AnnoyHamming" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
code for methods in class "Rcpp_AnnoyAngular" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_AnnoyAngular" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_AnnoyEuclidean" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_AnnoyEuclidean" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_AnnoyManhattan" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_AnnoyManhattan" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_AnnoyHamming" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_AnnoyHamming" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
code for methods in class "Rcpp_AnnoyAngular" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_AnnoyAngular" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_AnnoyEuclidean" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_AnnoyEuclidean" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_AnnoyManhattan" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_AnnoyManhattan" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_AnnoyHamming" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_AnnoyHamming" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
** testing if installed package keeps a record of temporary installation path
* DONE (eiR)
rm -f /<<BUILDDIR>>/r-bioc-eir-1.36.0\+ds/debian/r-bioc-eir/usr/lib/R/site-library/eiR/LICENSE
W: Ignoring specified R dependency: R (>= 2.10.0)
I: Using r-bioc-chemminer for Depends:ChemmineR (>= 2.15.15)
I: Using r-cran-dbi for Depends:DBI
I: Using r-cran-rsqlite for Recommends:rsqlite
I: Using r-bioc-biocstyle for Suggests:BiocStyle
W: Cannot find a debian package for Suggests:knitcitations
I: Using r-cran-knitr for Suggests:knitr
W: Cannot find a debian package for Suggests:knitrBootstrap
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-cran-snow for Imports:snow
I: Using r-cran-snowfall for Imports:snowfall
I: Using r-cran-runit for Imports:RUnit
I: Using r-bioc-chemminer for Imports:ChemmineR
I: Using r-cran-rcurl for Imports:RCurl
I: Using r-cran-digest for Imports:digest
I: Using r-bioc-biocgenerics for Imports:BiocGenerics
I: Using r-cran-rcppannoy for Imports:RcppAnnoy (>= 0.0.9)
I: BioConductor API version: r-api-bioc-3.15
I: Use r-bioc-eir as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_lintian -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-eir-dbgsym' in '../r-bioc-eir-dbgsym_1.36.0+ds-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-eir' in '../r-bioc-eir_1.36.0+ds-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-bioc-eir_1.36.0+ds-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../r-bioc-eir_1.36.0+ds-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-05-24T10:55:46Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-eir_1.36.0+ds-1_armhf.changes:
-------------------------------------
Format: 1.8
Date: Fri, 13 May 2022 12:06:22 +0200
Source: r-bioc-eir
Binary: r-bioc-eir r-bioc-eir-dbgsym
Architecture: armhf
Version: 1.36.0+ds-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-eir - Accelerated similarity searching of small molecules
Changes:
r-bioc-eir (1.36.0+ds-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* Standards-Version: 4.6.1 (routine-update)
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Files:
00630f1cbcddacf30b2e276c9a0ffbb3 7804 debug optional r-bioc-eir-dbgsym_1.36.0+ds-1_armhf.deb
701bed42f47c46360055060a351f2888 12850 gnu-r optional r-bioc-eir_1.36.0+ds-1_armhf.buildinfo
942e87c05043bdcc60111256fb0fbb3d 207696 gnu-r optional r-bioc-eir_1.36.0+ds-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-eir-dbgsym_1.36.0+ds-1_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 7804 bytes: control archive=540 bytes.
383 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-eir-dbgsym
Source: r-bioc-eir
Version: 1.36.0+ds-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 20
Depends: r-bioc-eir (= 1.36.0+ds-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-eir
Build-Ids: 59299a987654e37e993d42f5a50ae504d36bd8da
drwxr-xr-x root/root 0 2022-05-13 10:06 ./
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/lib/
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/lib/debug/.build-id/59/
-rw-r--r-- root/root 9748 2022-05-13 10:06 ./usr/lib/debug/.build-id/59/299a987654e37e993d42f5a50ae504d36bd8da.debug
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/share/
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-05-13 10:06 ./usr/share/doc/r-bioc-eir-dbgsym -> r-bioc-eir
r-bioc-eir_1.36.0+ds-1_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 207696 bytes: control archive=1792 bytes.
824 bytes, 15 lines control
2702 bytes, 36 lines md5sums
Package: r-bioc-eir
Version: 1.36.0+ds-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 294
Depends: r-base-core (>= 4.2.0-1), r-api-4.0, r-api-bioc-3.15, r-bioc-chemminer (>= 2.15.15), r-cran-dbi, r-cran-snow, r-cran-snowfall, r-cran-runit, r-cran-rcurl, r-cran-digest, r-bioc-biocgenerics, r-cran-rcppannoy (>= 0.0.9), libc6 (>= 2.4), libgcc-s1 (>= 3.5)
Recommends: r-cran-rsqlite
Suggests: r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/eiR/
Description: Accelerated similarity searching of small molecules
The eiR package provides utilities for accelerated
structure similarity searching of very large small molecule
data sets using an embedding and indexing approach.
drwxr-xr-x root/root 0 2022-05-13 10:06 ./
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/lib/
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/lib/R/
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/
-rw-r--r-- root/root 86 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/CITATION
-rw-r--r-- root/root 1282 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/DESCRIPTION
-rw-r--r-- root/root 597 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/INDEX
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/Meta/
-rw-r--r-- root/root 605 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/Meta/Rd.rds
-rw-r--r-- root/root 108 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/Meta/data.rds
-rw-r--r-- root/root 130 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/Meta/features.rds
-rw-r--r-- root/root 584 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/Meta/hsearch.rds
-rw-r--r-- root/root 292 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/Meta/links.rds
-rw-r--r-- root/root 435 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/Meta/nsInfo.rds
-rw-r--r-- root/root 1316 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/Meta/package.rds
-rw-r--r-- root/root 273 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/Meta/vignette.rds
-rw-r--r-- root/root 415 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/NAMESPACE
-rw-r--r-- root/root 2360 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/NEWS.Rd
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/R/
-rw-r--r-- root/root 1058 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/R/eiR
-rw-r--r-- root/root 114628 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/R/eiR.rdb
-rw-r--r-- root/root 1626 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/R/eiR.rdx
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/data/
-rw-r--r-- root/root 21259 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/data/example_compounds.RData
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/doc/
-rw-r--r-- root/root 3296 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/doc/eiR.R
-rw-r--r-- root/root 20001 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/doc/eiR.Rmd
-rw-r--r-- root/root 1315 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/doc/index.html
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/help/
-rw-r--r-- root/root 264 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/help/AnIndex
-rw-r--r-- root/root 206 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/help/aliases.rds
-rw-r--r-- root/root 41174 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/help/eiR.rdb
-rw-r--r-- root/root 443 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/help/eiR.rdx
-rw-r--r-- root/root 267 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/help/paths.rds
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/html/
-rw-r--r-- root/root 2405 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/html/00Index.html
-rw-r--r-- root/root 1735 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/html/R.css
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/libs/
-rw-r--r-- root/root 5544 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/libs/eiR.so
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/schema/
-rw-r--r-- root/root 3924 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/schema/data.RPostgreSQL
-rw-r--r-- root/root 3892 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/schema/data.SQLite
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/unitTests/
-rw-r--r-- root/root 13332 2022-05-13 10:06 ./usr/lib/R/site-library/eiR/unitTests/test_main.R
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/share/
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/share/doc/r-bioc-eir/
-rw-r--r-- root/root 426 2022-05-13 10:06 ./usr/share/doc/r-bioc-eir/changelog.Debian.gz
-rw-r--r-- root/root 9702 2022-05-13 10:06 ./usr/share/doc/r-bioc-eir/copyright
-rw-r--r-- root/root 395 2022-05-13 10:06 ./usr/share/doc/r-bioc-eir/run-unit-test
drwxr-xr-x root/root 0 2022-04-26 18:04 ./usr/share/doc/r-bioc-eir/tests/
-rw-r--r-- root/root 34 2022-04-26 18:04 ./usr/share/doc/r-bioc-eir/tests/runTests.R
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/share/lintian/
drwxr-xr-x root/root 0 2022-05-13 10:06 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 276 2022-05-13 10:06 ./usr/share/lintian/overrides/r-bioc-eir
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 1028
Build-Time: 38
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1269
Job: r-bioc-eir_1.36.0+ds-1
Machine Architecture: armhf
Package: r-bioc-eir
Package-Time: 1326
Source-Version: 1.36.0+ds-1
Space: 1028
Status: successful
Version: 1.36.0+ds-1
--------------------------------------------------------------------------------
Finished at 2022-05-24T10:55:46Z
Build needed 00:22:06, 1028k disk space