r-bioc-edger →
4.0.12+dfsg-1 →
armhf → 2024-01-28 23:57:22
sbuild (Debian sbuild) 0.85.0 (04 January 2023) on test2023
+==============================================================================+
| r-bioc-edger 4.0.12+dfsg-1 (armhf) Sun, 28 Jan 2024 23:53:47 +0000 |
+==============================================================================+
Package: r-bioc-edger
Version: 4.0.12+dfsg-1
Source Version: 4.0.12+dfsg-1
Distribution: trixie-staging
Machine Architecture: arm64
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-ea0d6767-e97f-4ba0-bd23-870e7b53e6df' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-edger-HP069m/resolver-mpLgde' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.4 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.0 MB]
Fetched 29.5 MB in 5s (5476 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-edger' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-edger.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-edger.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1736 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main r-bioc-edger 4.0.12+dfsg-1 (dsc) [2116 B]
Get:2 http://172.17.4.1/private trixie-staging/main r-bioc-edger 4.0.12+dfsg-1 (tar) [1728 kB]
Get:3 http://172.17.4.1/private trixie-staging/main r-bioc-edger 4.0.12+dfsg-1 (diff) [5640 B]
Fetched 1736 kB in 0s (6428 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-edger-HP069m/r-bioc-edger-4.0.12+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-edger-HP069m' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-limma, r-cran-locfit, r-cran-rcpp, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-limma, r-cran-locfit, r-cran-rcpp, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [677 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [709 B]
Fetched 1995 B in 0s (0 B/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian
libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev
libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl
libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1
libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-13-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl liblzma-dev
libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsharpyuv0 libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db openssl pkg-config pkgconf pkgconf-bin
po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-limma
r-cran-lattice r-cran-littler r-cran-locfit r-cran-pkgkitten r-cran-rcpp
r-cran-statmod sensible-utils ucf unzip x11-common xauth xdg-utils zip
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make
postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-13-doc libcoarrays-dev groff liblapack-doc
low-memory-monitor icu-doc liblzma-doc ncurses-doc libscalar-number-perl
readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl
libregexp-ipv6-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less
www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib
r-base-html texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase
r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges r-bioc-delayedarray
r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy
r-bioc-deseq2 r-bioc-annotate r-cran-runit r-cran-biasedurn r-cran-ellipse
r-cran-gplots r-cran-knitr r-cran-mass r-bioc-biocstyle r-bioc-go.db
r-bioc-org.hs.eg.db r-cran-getopt r-cran-interp r-cran-gam r-cran-inline
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libio-compress-brotli-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian
libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev
libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl
libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1
libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-13-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl liblzma-dev
libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsharpyuv0 libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db openssl pkg-config pkgconf pkgconf-bin
po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-limma
r-cran-lattice r-cran-littler r-cran-locfit r-cran-pkgkitten r-cran-rcpp
r-cran-statmod sbuild-build-depends-main-dummy sensible-utils ucf unzip
x11-common xauth xdg-utils zip zlib1g-dev
0 upgraded, 177 newly installed, 0 to remove and 3 not upgraded.
Need to get 96.6 MB of archives.
After this operation, 282 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [904 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.8-1 [65.5 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.3-6 [81.4 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-3 [1358 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf sensible-utils all 0.0.20 [19.3 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.1.4-2 [1375 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20230311 [153 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-14 [157 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf ucf all 3.0043+nmu1 [55.2 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-14 [496 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.10 [82.9 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.10-1 [10.6 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:28 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-14 [1203 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.10 [882 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf zip armhf 3.0-13 [207 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf unzip armhf 6.0-28 [147 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf libpaper1 armhf 1.1.29 [11.9 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf libpaper-utils armhf 1.1.29 [8416 B]
Get:40 http://172.17.4.1/private trixie-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.1.0-2 [280 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf libpng16-16 armhf 1.6.40-3 [259 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [366 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.14.2-6 [316 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.14.2-6 [367 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.8-1 [120 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.7-1 [328 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.7-1 [729 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libcairo2 armhf 1.18.0-1 [425 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.58.0-1 [61.7 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-4 [195 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libcurl4 armhf 8.5.0-2+rpi1 [377 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.78.3-1 [1256 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 13.2.0-9+rpi1 [247 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf fontconfig armhf 2.14.2-6 [461 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-2 [62.8 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.3.0-2 [2152 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libthai-data all 0.1.29-2 [168 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libdatrie1 armhf 0.2.13-3 [34.3 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libthai0 armhf 0.1.29-2 [46.1 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libpango-1.0-0 armhf 1.51.0+ds-4 [189 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libpangoft2-1.0-0 armhf 1.51.0+ds-4 [40.8 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libpangocairo-1.0-0 armhf 1.51.0+ds-4 [31.1 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-4 [132 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.3.2-0.3 [106 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.3.2-0.3 [261 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-3 [299 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libxt6 armhf 1:1.2.1-1.1 [155 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf r-base-core armhf 4.3.2-1 [26.4 MB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf libgfortran-13-dev armhf 13.2.0-9+rpi1 [293 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf gfortran-13 armhf 13.2.0-9+rpi1 [7837 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf gfortran armhf 4:13.2.0-1+rpi1 [1424 B]
Get:99 http://172.17.4.1/private trixie-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.4+20240113-1 [80.9 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf libncurses-dev armhf 6.4+20240113-1 [289 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libreadline-dev armhf 8.2-3 [124 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [258 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf libpcre2-16-0 armhf 10.42-4 [211 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf libpcre2-32-0 armhf 10.42-4 [201 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf libpcre2-posix3 armhf 10.42-4 [55.1 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf libpcre2-dev armhf 10.42-4 [648 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.3.dfsg-3 [903 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf libpng-dev armhf 1.6.40-3 [337 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf liblzma-dev armhf 5.4.5-0.3 [278 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf icu-devtools armhf 72.1-4 [174 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf libicu-dev armhf 72.1-4 [9956 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf xauth armhf 1:1.1.2-1 [32.4 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf r-base-dev all 4.3.2-1 [4504 B]
Get:123 http://172.17.4.1/private trixie-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf libclone-perl armhf 0.46-1+b1 [13.2 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf libhttp-date-perl all 6.06-1 [10.7 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf liburi-perl all 5.21-1 [95.6 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf libhttp-message-perl all 6.45-1 [82.0 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf libparams-util-perl armhf 1.102-2+b2 [23.5 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf libsub-install-perl all 0.929-1 [10.5 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b2 [10.4 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf libdevel-callchecker-perl armhf 0.008-2+b1 [15.0 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf libparams-classify-perl armhf 0.015-2+b2 [21.4 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b2 [13.8 kB]
Get:146 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:147 http://172.17.4.1/private trixie-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:148 http://172.17.4.1/private trixie-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:149 http://172.17.4.1/private trixie-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:150 http://172.17.4.1/private trixie-staging/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get:151 http://172.17.4.1/private trixie-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:152 http://172.17.4.1/private trixie-staging/main armhf libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get:153 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:154 http://172.17.4.1/private trixie-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:155 http://172.17.4.1/private trixie-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:156 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:157 http://172.17.4.1/private trixie-staging/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get:158 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b2 [18.4 kB]
Get:159 http://172.17.4.1/private trixie-staging/main armhf libmoose-perl armhf 2.2207-1 [765 kB]
Get:160 http://172.17.4.1/private trixie-staging/main armhf libvariable-magic-perl armhf 0.63-1+b2 [41.5 kB]
Get:161 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:162 http://172.17.4.1/private trixie-staging/main armhf libsub-identify-perl armhf 0.14-3+b1 [10.9 kB]
Get:163 http://172.17.4.1/private trixie-staging/main armhf libsub-name-perl armhf 0.27-1+b1 [12.1 kB]
Get:164 http://172.17.4.1/private trixie-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:165 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 8.5.0-2+rpi1 [372 kB]
Get:166 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-perl armhf 4.17-10+b1 [55.8 kB]
Get:167 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:168 http://172.17.4.1/private trixie-staging/main armhf dh-r all 20231212 [42.2 kB]
Get:169 http://172.17.4.1/private trixie-staging/main armhf r-cran-littler armhf 0.3.19-1 [88.0 kB]
Get:170 http://172.17.4.1/private trixie-staging/main armhf littler all 0.3.19-1 [15.4 kB]
Get:171 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocgenerics all 0.48.1-2 [597 kB]
Get:172 http://172.17.4.1/private trixie-staging/main armhf r-cran-statmod armhf 1.5.0-1 [295 kB]
Get:173 http://172.17.4.1/private trixie-staging/main armhf r-bioc-limma armhf 3.58.1+dfsg-1 [1945 kB]
Get:174 http://172.17.4.1/private trixie-staging/main armhf r-cran-lattice armhf 0.22-5-1 [1393 kB]
Get:175 http://172.17.4.1/private trixie-staging/main armhf r-cran-locfit armhf 1.5-9.8-1 [483 kB]
Get:176 http://172.17.4.1/private trixie-staging/main armhf r-cran-pkgkitten all 0.2.3-1 [26.7 kB]
Get:177 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcpp armhf 1.0.12-1 [2043 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package libuchardet0:armhf.
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Unpacking m4 (1.4.19-4) ...
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Unpacking dctrl-tools (2.24-3) ...
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Unpacking libdebhelper-perl (13.11.10) ...
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Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libpsl5:armhf (0.21.2-1+b1) ...
Setting up libicu72:armhf (72.1-4) ...
Setting up liblerc4:armhf (4.0.0+ds-4) ...
Setting up bsdextrautils (2.39.3-6) ...
Setting up libdynaloader-functions-perl (0.003-3) ...
Setting up libdatrie1:armhf (0.2.13-3) ...
Setting up libmagic-mgc (1:5.45-2) ...
Setting up libclone-perl:armhf (0.46-1+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-3+b1) ...
Setting up libglib2.0-0:armhf (2.78.3-1) ...
No schema files found: doing nothing.
Setting up unzip (6.0-28) ...
Setting up libdebhelper-perl (13.11.10) ...
Setting up libbrotli1:armhf (1.1.0-2) ...
Setting up liblwp-mediatypes-perl (6.04-2) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libtry-tiny-perl (0.31-2) ...
Setting up libnghttp2-14:armhf (1.58.0-1) ...
Setting up libmagic1:armhf (1:5.45-2) ...
Setting up libdeflate0:armhf (1.18-1) ...
Setting up gettext-base (0.21-14) ...
Setting up m4 (1.4.19-4) ...
Setting up libencode-locale-perl (1.05-3) ...
Setting up file (1:5.45-2) ...
Setting up libjbig0:armhf (2.1-6.1) ...
Setting up libpcre2-16-0:armhf (10.42-4) ...
Setting up libsub-install-perl (0.929-1) ...
Setting up zip (3.0-13) ...
Setting up libpackage-stash-xs-perl:armhf (0.30-1+b2) ...
Setting up autotools-dev (20220109.1) ...
Setting up libpcre2-32-0:armhf (10.42-4) ...
Setting up libblas3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libpkgconf3:armhf (1.8.1-1) ...
Setting up libalgorithm-c3-perl (0.11-2) ...
Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ...
Setting up libswitch-perl (2.17-3) ...
Setting up libx11-data (2:1.8.7-1) ...
Setting up libjpeg62-turbo-dev:armhf (1:2.1.5-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.4+20240113-1) ...
Setting up libfribidi0:armhf (1.0.13-3) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16:armhf (1.6.40-3) ...
Setting up libvariable-magic-perl (0.63-1+b2) ...
Setting up libio-html-perl (1.004-3) ...
Setting up libtcl8.6:armhf (8.6.13+dfsg-2) ...
Setting up autopoint (0.21-14) ...
Setting up libb-hooks-op-check-perl:armhf (0.22-2+b2) ...
Setting up icu-devtools (72.1-4) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up pkgconf-bin (1.8.1-1) ...
Setting up libparams-util-perl (1.102-2+b2) ...
Setting up libgfortran5:armhf (13.2.0-9+rpi1) ...
Setting up autoconf (2.71-3) ...
Setting up libsub-exporter-progressive-perl (0.001013-3) ...
Setting up libwebp7:armhf (1.3.2-0.3) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up liblzma-dev:armhf (5.4.5-0.3) ...
Setting up libsub-name-perl:armhf (0.27-1+b1) ...
Setting up zlib1g-dev:armhf (1:1.3.dfsg-3) ...
Setting up libpcre2-posix3:armhf (10.42-4) ...
Setting up sensible-utils (0.0.20) ...
Setting up libtiff6:armhf (4.5.1+git230720-3) ...
Setting up libuchardet0:armhf (0.0.8-1) ...
Setting up libsub-override-perl (0.10-1) ...
Setting up libthai-data (0.1.29-2) ...
Setting up libdevel-globaldestruction-perl (0.14-4) ...
Setting up libssh2-1:armhf (1.11.0-4) ...
Setting up libdevel-stacktrace-perl (2.0500-1) ...
Setting up libgfortran-13-dev:armhf (13.2.0-9+rpi1) ...
Setting up openssl (3.1.4-2) ...
Setting up libbsd0:armhf (0.11.8-1) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up libicu-dev:armhf (72.1-4) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up liburi-perl (5.21-1) ...
Setting up libblas-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
Setting up libbz2-dev:armhf (1.0.8-5+b2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.06-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.4+20240113-1) ...
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-14) ...
Setting up libpcre2-dev:armhf (10.42-4) ...
Setting up libtool (2.4.7-7) ...
Setting up libxcb-render0:armhf (1.15-1) ...
Setting up fontconfig-config (2.14.2-6) ...
Setting up libpng-dev:armhf (1.6.40-3) ...
Setting up libjpeg-dev:armhf (1:2.1.5-2) ...
Setting up libcurl3-gnutls:armhf (8.5.0-2+rpi1) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libreadline-dev:armhf (8.2-3) ...
Setting up libdevel-callchecker-perl:armhf (0.008-2+b1) ...
Setting up pkgconf:armhf (1.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:armhf (0.1.29-2) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up libfreetype6:armhf (2.13.2+dfsg-1) ...
Setting up gfortran-13 (13.2.0-9+rpi1) ...
Setting up liblapack-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.114-1) ...
Setting up pkg-config:armhf (1.8.1-1) ...
Setting up ucf (3.0043+nmu1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.23.0-3) ...
Setting up libcurl4:armhf (8.5.0-2+rpi1) ...
Setting up libx11-6:armhf (2:1.8.7-1) ...
Setting up libharfbuzz0b:armhf (8.3.0-2) ...
Setting up libfontconfig1:armhf (2.14.2-6) ...
Setting up libmro-compat-perl (0.15-2) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.3-3) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (6.45-1) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libpaper1:armhf (1.1.29) ...
Creating config file /etc/papersize with new version
Setting up fontconfig (2.14.2-6) ...
Regenerating fonts cache... done.
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b2) ...
Setting up libpango-1.0-0:armhf (1.51.0+ds-4) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl:armhf (4.17-10+b1) ...
Setting up libpaper-utils (1.1.29) ...
Setting up man-db (2.12.0-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:13.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:armhf (1.18.0-1) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libxt6:armhf (1:1.2.1-1.1) ...
Setting up xauth (1:1.1.2-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libpangoft2-1.0-0:armhf (1.51.0+ds-4) ...
Setting up libpangocairo-1.0-0:armhf (1.51.0+ds-4) ...
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libtk8.6:armhf (8.6.13-2) ...
Setting up debhelper (13.11.10) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up r-base-core (4.3.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-lattice (0.22-5-1) ...
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up r-cran-locfit (1.5-9.8-1) ...
Setting up r-cran-statmod (1.5.0-1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b2) ...
Setting up r-cran-pkgkitten (0.2.3-1) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up r-cran-littler (0.3.19-1) ...
Setting up r-cran-rcpp (1.0.12-1) ...
Setting up r-bioc-biocgenerics (0.48.1-2) ...
Setting up r-base-dev (4.3.2-1) ...
Setting up littler (0.3.19-1) ...
Setting up libmoose-perl:armhf (2.2207-1) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up r-bioc-limma (3.58.1+dfsg-1) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Setting up dh-r (20231212) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.37-13+rpi1) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.47-v8+ #1 SMP PREEMPT Fri Sep 1 07:05:33 BST 2023 arm64 (aarch64)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.2+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-9+rpi1 gcc-12_12.3.0-13+rpi1 gcc-13_13.2.0-9+rpi1 libc6-dev_2.37-13+rpi1 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-9+rpi1 libstdc++6_13.2.0-9+rpi1 linux-libc-dev_6.5.6-1+rpi1+b1
Package versions: adduser_3.137 apt_2.7.9 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.3-6 bsdutils_1:2.39.3-6 build-essential_12.10 bzip2_1.0.8-5+b2 ca-certificates_20230311 coreutils_9.4-3 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-13+rpi1 cpp-13_13.2.0-9+rpi1 dash_0.5.12-6 dctrl-tools_2.24-3 debconf_1.5.83 debhelper_13.11.10 debianutils_5.16 dh-autoreconf_20 dh-r_20231212 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dpkg_1.22.2+rpi1 dpkg-dev_1.22.2+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.33-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig_2.14.2-6 fontconfig-config_2.14.2-6 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-9+rpi1 gcc_4:13.2.0-1+rpi1 gcc-10-base_10.4.0-7+rpi1 gcc-12_12.3.0-13+rpi1 gcc-12-base_12.3.0-13+rpi1 gcc-13_13.2.0-9+rpi1 gcc-13-base_13.2.0-9+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-14 gettext-base_0.21-14 gfortran_4:13.2.0-1+rpi1 gfortran-13_13.2.0-9+rpi1 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-4 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu2 icu-devtools_72.1-4 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-6 libalgorithm-c3-perl_0.11-2 libapt-pkg6.0_2.7.9 libarchive-zip-perl_1.68-1 libasan8_13.2.0-9+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-9+rpi1 libattr1_1:2.5.1-5 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2+b2 libbinutils_2.41-6+rpi1 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.39.3-6 libbrotli1_1.1.0-2 libbsd0_0.11.8-1 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.37-13+rpi1 libc-dev-bin_2.37-13+rpi1 libc6_2.37-13+rpi1 libc6-dev_2.37-13+rpi1 libcairo2_1.18.0-1 libcap-ng0_0.8.4-1 libcap2_1:2.66-4 libcc1-0_13.2.0-9+rpi1 libclass-c3-perl_0.35-2 libclass-load-perl_0.25-2 libclass-load-xs-perl_0.10-2+b2 libclone-perl_0.46-1+b1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.41-6+rpi1 libctf0_2.41-6+rpi1 libcurl3-gnutls_8.5.0-2+rpi1 libcurl4_8.5.0-2+rpi1 libdata-optlist-perl_0.114-1 libdatrie1_0.2.13-3 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271 libdebhelper-perl_13.11.10 libdeflate0_1.18-1 libdevel-callchecker-perl_0.008-2+b1 libdevel-globaldestruction-perl_0.14-4 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0500-1 libdist-checkconflicts-perl_0.11-2 libdpkg-perl_1.22.2+rpi1 libdynaloader-functions-perl_0.003-3 libelf1_0.188-2.1+rpi1 libencode-locale-perl_1.05-3 libeval-closure-perl_0.14-3 libexpat1_2.5.0-2 libext2fs2_1.47.0-2 libfakeroot_1.33-1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libfontconfig1_2.14.2-6 libfreetype6_2.13.2+dfsg-1 libfribidi0_1.0.13-3 libgcc-12-dev_12.3.0-13+rpi1 libgcc-13-dev_13.2.0-9+rpi1 libgcc-s1_13.2.0-9+rpi1 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgfortran-13-dev_13.2.0-9+rpi1 libgfortran5_13.2.0-9+rpi1 libglib2.0-0_2.78.3-1 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.3-1 libgomp1_13.2.0-9+rpi1 libgpg-error0_1.47-3 libgraphite2-3_1.3.14-2 libgssapi-krb5-2_1.20.1-5 libharfbuzz0b_8.3.0-2 libhogweed6_3.9.1-2 libhttp-date-perl_6.06-1 libhttp-message-perl_6.45-1 libice6_2:1.0.10-1 libicu-dev_72.1-4 libicu72_72.1-4 libidn2-0_2.3.4-1 libio-html-perl_1.004-3 libisl23_0.26-3 libjansson4_2.14-2 libjbig0_2.1-6.1 libjpeg-dev_1:2.1.5-2 libjpeg62-turbo_1:2.1.5-2 libjpeg62-turbo-dev_1:2.1.5-2 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 libksba8_1.6.5-2 liblapack-dev_3.11.0-2 liblapack3_3.11.0-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1+b1 liblerc4_4.0.0+ds-4 liblocale-gettext-perl_1.07-6+b1 liblwp-mediatypes-perl_6.04-2 liblz4-1_1.9.4-1+rpi1+b1 liblzma-dev_5.4.5-0.3 liblzma5_5.4.5-0.3 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-2 libmodule-implementation-perl_0.09-2 libmodule-runtime-conflicts-perl_0.003-2 libmodule-runtime-perl_0.016-2 libmoose-perl_2.2207-1 libmount1_2.39.3-6 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libmro-compat-perl_0.15-2 libnamespace-clean-perl_0.27-2 libncurses-dev_6.4+20240113-1 libncurses6_6.4+20240113-1 libncursesw6_6.4+20240113-1 libnettle8_3.9.1-2 libnghttp2-14_1.58.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-4 libpackage-deprecationmanager-perl_0.18-1 libpackage-stash-perl_0.40-1 libpackage-stash-xs-perl_0.30-1+b2 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpango-1.0-0_1.51.0+ds-4 libpangocairo-1.0-0_1.51.0+ds-4 libpangoft2-1.0-0_1.51.0+ds-4 libpaper-utils_1.1.29 libpaper1_1.1.29 libparams-classify-perl_0.015-2+b2 libparams-util-perl_1.102-2+b2 libpcre2-16-0_10.42-4 libpcre2-32-0_10.42-4 libpcre2-8-0_10.42-4 libpcre2-dev_10.42-4 libpcre2-posix3_10.42-4 libperl5.38_5.38.2-3 libpipeline1_1.5.7-1 libpixman-1-0_0.42.2-1 libpkgconf3_1.8.1-1 libpng-dev_1.6.40-3 libpng16-16_1.6.40-3 libpsl5_0.21.2-1+b1 libreadline-dev_8.2-3 libreadline8_8.2-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg1-4 libsasl2-modules-db_2.1.28+dfsg1-4 libseccomp2_2.5.4-2+rpi1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol2_3.5-2 libsframe1_2.41-6+rpi1 libsharpyuv0_1.3.2-0.3 libsm6_2:1.2.3-1 libsmartcols1_2.39.3-6 libsqlite3-0_3.44.2-1 libss2_1.47.0-2 libssh2-1_1.11.0-4 libssl3_3.1.4-2 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-9+rpi1 libstdc++6_13.2.0-9+rpi1 libsub-exporter-perl_0.990-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-3+b1 libsub-install-perl_0.929-1 libsub-name-perl_0.27-1+b1 libsub-override-perl_0.10-1 libswitch-perl_2.17-3 libsystemd0_254.5-1+rpi1 libtasn1-6_4.19.0-3 libtcl8.6_8.6.13+dfsg-2 libtext-charwidth-perl_0.04-11+b1 libtext-glob-perl_0.11-3 libtext-iconv-perl_1.7-8+b1 libthai-data_0.1.29-2 libthai0_0.1.29-2 libtiff6_4.5.1+git230720-3 libtimedate-perl_2.3300-2 libtinfo6_6.4+20240113-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtk8.6_8.6.13-2 libtool_2.4.7-7 libtry-tiny-perl_0.31-2 libubsan1_13.2.0-9+rpi1 libuchardet0_0.0.8-1 libudev1_254.5-1+rpi1 libunistring5_1.1-2 liburi-perl_5.21-1 libuuid1_2.39.3-6 libvariable-magic-perl_0.63-1+b2 libwebp7_1.3.2-0.3 libwww-curl-perl_4.17-10+b1 libwww-curl-simple-perl_0.100191-3 libx11-6_2:1.8.7-1 libx11-data_2:1.8.7-1 libxau6_1:1.0.9-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1.3 libxmuu1_2:1.1.3-3 libxrender1_1:0.9.10-1.1 libxss1_1:1.2.3-1 libxt6_1:1.2.1-1.1 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.6-1+rpi1+b1 littler_0.3.19-1 login_1:4.13+dfsg1-3 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-3 mawk_1.3.4.20231126-1 mount_2.39.3-6 nano_7.2-2 ncurses-base_6.4+20240113-1 ncurses-bin_6.4+20240113-1 openssl_3.1.4-2 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.38.2-3 perl-base_5.38.2-3 perl-modules-5.38_5.38.2-3 pinentry-curses_1.2.1-3 pkg-config_1.8.1-1 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 r-base-core_4.3.2-1 r-base-dev_4.3.2-1 r-bioc-biocgenerics_0.48.1-2 r-bioc-limma_3.58.1+dfsg-1 r-cran-lattice_0.22-5-1 r-cran-littler_0.3.19-1 r-cran-locfit_1.5-9.8-1 r-cran-pkgkitten_0.2.3-1 r-cran-rcpp_1.0.12-1 r-cran-statmod_1.5.0-1 raspbian-archive-keyring_20120528.2 readline-common_8.2-3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.20 sysvinit-utils_3.08-5 tar_1.35+dfsg-3 tzdata_2023d-1 ucf_3.0043+nmu1 unzip_6.0-28 usr-is-merged_38 usrmerge_38 util-linux_2.39.3-6 x11-common_1:7.7+23 xauth_1:1.1.2-1 xdg-utils_1.1.3-4.1 xz-utils_5.4.5-0.3 zip_3.0-13 zlib1g_1:1.3.dfsg-3 zlib1g-dev_1:1.3.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: r-bioc-edger
Binary: r-bioc-edger
Architecture: any
Version: 4.0.12+dfsg-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://bioconductor.org/packages/edgeR/
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-edger
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-edger.git
Testsuite: autopkgtest-pkg-r
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-limma, r-cran-locfit, r-cran-rcpp
Package-List:
r-bioc-edger deb gnu-r optional arch=any
Checksums-Sha1:
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Checksums-Sha256:
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Files:
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gpgv: Signature made Thu Jan 25 16:04:05 2024 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-bioc-edger_4.0.12+dfsg-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-bioc-edger in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-edger_4.0.12+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-edger_4.0.12+dfsg-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=124
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-ea0d6767-e97f-4ba0-bd23-870e7b53e6df
SCHROOT_UID=114
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mRaspbian pi5 test autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package r-bioc-edger
dpkg-buildpackage: info: source version 4.0.12+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-edger/ -a -O--buildsystem=R
I: R Package: edgeR Version: 4.0.12
I: Building using R version 4.3.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Thu, 25 Jan 2024 16:59:17 +0100
mkdir -p /<<BUILDDIR>>/r-bioc-edger-4.0.12\+dfsg/debian/r-bioc-edger/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-edger-4.0.12\+dfsg/debian/r-bioc-edger/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 25 Jan 2024 16:59:17 +0100'"
* installing *source* package ‘edgeR’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Raspbian 13.2.0-9+rpi1) 13.2.0’
using C++ compiler: ‘g++ (Raspbian 13.2.0-9+rpi1) 13.2.0’
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c R_add_prior_count.cpp -o R_add_prior_count.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c R_ave_log_cpm.cpp -o R_ave_log_cpm.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c R_calculate_cpm.cpp -o R_calculate_cpm.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c R_check_poisson_bound.cpp -o R_check_poisson_bound.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c R_compute_apl.cpp -o R_compute_apl.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c R_compute_nbdev.cpp -o R_compute_nbdev.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c R_exact_test_by_deviance.cpp -o R_exact_test_by_deviance.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c R_fit_levenberg.cpp -o R_fit_levenberg.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c R_fit_one_group.cpp -o R_fit_one_group.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c R_get_one_way_fitted.cpp -o R_get_one_way_fitted.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c R_initialize_levenberg.cpp -o R_initialize_levenberg.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c R_loess_by_col.cpp -o R_loess_by_col.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c R_maximize_interpolant.cpp -o R_maximize_interpolant.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c R_process_hairpin_reads.c -o R_process_hairpin_reads.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c R_ql_glm.c -o R_ql_glm.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c R_simple_good_turing.cpp -o R_simple_good_turing.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c add_prior.cpp -o add_prior.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c adj_coxreid.cpp -o adj_coxreid.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c fmm_spline.c -o fmm_spline.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c glm_levenberg.cpp -o glm_levenberg.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c glm_one_group.cpp -o glm_one_group.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c init.cpp -o init.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c interpolator.cpp -o interpolator.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c nbdev.c -o nbdev.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c objects.cpp -o objects.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ql_glm.c -o ql_glm.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ql_weights.c -o ql_weights.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c qr_hat.c -o qr_hat.o
g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-z,relro -o edgeR.so R_add_prior_count.o R_ave_log_cpm.o R_calculate_cpm.o R_check_poisson_bound.o R_compute_apl.o R_compute_nbdev.o R_exact_test_by_deviance.o R_fit_levenberg.o R_fit_one_group.o R_get_one_way_fitted.o R_initialize_levenberg.o R_loess_by_col.o R_maximize_interpolant.o R_process_hairpin_reads.o R_ql_glm.o R_simple_good_turing.o add_prior.o adj_coxreid.o fmm_spline.o glm_levenberg.o glm_one_group.o init.o interpolator.o nbdev.o objects.o ql_glm.o ql_weights.o qr_hat.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-edger/usr/lib/R/site-library/00LOCK-r-bioc-edger-4.0.12+dfsg/00new/edgeR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (edgeR)
W: Ignoring specified R dependency: R (>= 3.6.0)
I: Using r-bioc-limma for Depends:limma (>= 3.41.5)
I: Using r-cran-jsonlite for Suggests:jsonlite
I: Using r-cran-readr for Suggests:readr
I: Using r-bioc-rhdf5 for Suggests:rhdf5
I: Using r-cran-knitr for Suggests:knitr
I: Using r-bioc-annotationdbi for Suggests:AnnotationDbi
I: Using r-bioc-biobase for Suggests:Biobase
I: Using r-bioc-biocstyle for Suggests:BiocStyle
I: Using r-bioc-summarizedexperiment for Suggests:SummarizedExperiment
I: Using r-bioc-org.hs.eg.db for Suggests:org.Hs.eg.db
I: Using r-cran-matrix by changing version to for Suggests:Matrix
I: Using r-cran-seuratobject for Suggests:SeuratObject
I: Using r-cran-locfit for Imports:locfit
I: Using r-cran-rcpp for Imports:Rcpp
I: Using r-cran-rcpp for LinkingTo:Rcpp
I: BioConductor API version: r-api-bioc-3.18
I: Use r-bioc-edger as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_fixperms
find debian -name "*.Rnw" -exec chmod -x \{\} \;
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-edger-dbgsym' in '../r-bioc-edger-dbgsym_4.0.12+dfsg-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-edger' in '../r-bioc-edger_4.0.12+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-bioc-edger_4.0.12+dfsg-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi5 test autobuilder <root@raspbian.org> -O../r-bioc-edger_4.0.12+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-01-28T23:57:17Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-edger_4.0.12+dfsg-1_armhf.changes:
-----------------------------------------
Format: 1.8
Date: Thu, 25 Jan 2024 16:59:17 +0100
Source: r-bioc-edger
Binary: r-bioc-edger r-bioc-edger-dbgsym
Architecture: armhf
Version: 4.0.12+dfsg-1
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian pi5 test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-edger - Empirical analysis of digital gene expression data in R
Changes:
r-bioc-edger (4.0.12+dfsg-1) unstable; urgency=medium
.
* New upstream version
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Files:
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b400902026df3d8730cb7de9060009ba 10177 gnu-r optional r-bioc-edger_4.0.12+dfsg-1_armhf.buildinfo
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: r-bioc-edger
Binary: r-bioc-edger r-bioc-edger-dbgsym
Architecture: armhf
Version: 4.0.12+dfsg-1
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sun, 28 Jan 2024 23:57:17 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
autoconf (= 2.71-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-14),
autotools-dev (= 20220109.1),
base-files (= 13+rpi1),
base-passwd (= 3.6.3),
bash (= 5.2.21-2),
binutils (= 2.41-6+rpi1),
binutils-arm-linux-gnueabihf (= 2.41-6+rpi1),
binutils-common (= 2.41-6+rpi1),
bsdextrautils (= 2.39.3-6),
bsdutils (= 1:2.39.3-6),
build-essential (= 12.10),
bzip2 (= 1.0.8-5+b2),
ca-certificates (= 20230311),
coreutils (= 9.4-3),
cpp (= 4:13.2.0-1+rpi1),
cpp-12 (= 12.3.0-13+rpi1),
cpp-13 (= 13.2.0-9+rpi1),
dash (= 0.5.12-6),
dctrl-tools (= 2.24-3),
debconf (= 1.5.83),
debhelper (= 13.11.10),
debianutils (= 5.16),
dh-autoreconf (= 20),
dh-r (= 20231212),
dh-strip-nondeterminism (= 1.13.1-1),
diffutils (= 1:3.10-1),
dpkg (= 1.22.2+rpi1),
dpkg-dev (= 1.22.2+rpi1),
dwz (= 0.15-1),
file (= 1:5.45-2),
findutils (= 4.9.0-5),
fontconfig (= 2.14.2-6),
fontconfig-config (= 2.14.2-6),
fonts-dejavu-core (= 2.37-8),
fonts-dejavu-mono (= 2.37-8),
g++ (= 4:13.2.0-1+rpi1),
g++-13 (= 13.2.0-9+rpi1),
gcc (= 4:13.2.0-1+rpi1),
gcc-12 (= 12.3.0-13+rpi1),
gcc-12-base (= 12.3.0-13+rpi1),
gcc-13 (= 13.2.0-9+rpi1),
gcc-13-base (= 13.2.0-9+rpi1),
gettext (= 0.21-14),
gettext-base (= 0.21-14),
gfortran (= 4:13.2.0-1+rpi1),
gfortran-13 (= 13.2.0-9+rpi1),
grep (= 3.11-4),
groff-base (= 1.23.0-3),
gzip (= 1.12-1),
hostname (= 3.23+nmu2),
icu-devtools (= 72.1-4),
init-system-helpers (= 1.66),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.1-6),
libalgorithm-c3-perl (= 0.11-2),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 13.2.0-9+rpi1),
libatomic1 (= 13.2.0-9+rpi1),
libattr1 (= 1:2.5.1-5),
libaudit-common (= 1:3.1.2-1),
libaudit1 (= 1:3.1.2-1),
libb-hooks-endofscope-perl (= 0.26-1),
libb-hooks-op-check-perl (= 0.22-2+b2),
libbinutils (= 2.41-6+rpi1),
libblas-dev (= 3.11.0-2),
libblas3 (= 3.11.0-2),
libblkid1 (= 2.39.3-6),
libbrotli1 (= 1.1.0-2),
libbsd0 (= 0.11.8-1),
libbz2-1.0 (= 1.0.8-5+b2),
libbz2-dev (= 1.0.8-5+b2),
libc-bin (= 2.37-13+rpi1),
libc-dev-bin (= 2.37-13+rpi1),
libc6 (= 2.37-13+rpi1),
libc6-dev (= 2.37-13+rpi1),
libcairo2 (= 1.18.0-1),
libcap-ng0 (= 0.8.4-1),
libcap2 (= 1:2.66-4),
libcc1-0 (= 13.2.0-9+rpi1),
libclass-c3-perl (= 0.35-2),
libclass-load-perl (= 0.25-2),
libclass-load-xs-perl (= 0.10-2+b2),
libclone-perl (= 0.46-1+b1),
libcom-err2 (= 1.47.0-2),
libcrypt-dev (= 1:4.4.36-4),
libcrypt1 (= 1:4.4.36-4),
libctf-nobfd0 (= 2.41-6+rpi1),
libctf0 (= 2.41-6+rpi1),
libcurl3-gnutls (= 8.5.0-2+rpi1),
libcurl4 (= 8.5.0-2+rpi1),
libdata-optlist-perl (= 0.114-1),
libdatrie1 (= 0.2.13-3),
libdb5.3 (= 5.3.28+dfsg2-4),
libdebconfclient0 (= 0.271),
libdebhelper-perl (= 13.11.10),
libdeflate0 (= 1.18-1),
libdevel-callchecker-perl (= 0.008-2+b1),
libdevel-globaldestruction-perl (= 0.14-4),
libdevel-overloadinfo-perl (= 0.007-1),
libdevel-stacktrace-perl (= 2.0500-1),
libdist-checkconflicts-perl (= 0.11-2),
libdpkg-perl (= 1.22.2+rpi1),
libdynaloader-functions-perl (= 0.003-3),
libelf1 (= 0.188-2.1+rpi1),
libencode-locale-perl (= 1.05-3),
libeval-closure-perl (= 0.14-3),
libexpat1 (= 2.5.0-2),
libffi8 (= 3.4.4-2),
libfile-find-rule-perl (= 0.34-3),
libfile-stripnondeterminism-perl (= 1.13.1-1),
libfile-which-perl (= 1.27-2),
libfontconfig1 (= 2.14.2-6),
libfreetype6 (= 2.13.2+dfsg-1),
libfribidi0 (= 1.0.13-3),
libgcc-12-dev (= 12.3.0-13+rpi1),
libgcc-13-dev (= 13.2.0-9+rpi1),
libgcc-s1 (= 13.2.0-9+rpi1),
libgcrypt20 (= 1.10.3-2),
libgdbm-compat4 (= 1.23-5),
libgdbm6 (= 1.23-5),
libgfortran-13-dev (= 13.2.0-9+rpi1),
libgfortran5 (= 13.2.0-9+rpi1),
libglib2.0-0 (= 2.78.3-1),
libgmp10 (= 2:6.3.0+dfsg-2),
libgnutls30 (= 3.8.3-1),
libgomp1 (= 13.2.0-9+rpi1),
libgpg-error0 (= 1.47-3),
libgraphite2-3 (= 1.3.14-2),
libgssapi-krb5-2 (= 1.20.1-5),
libharfbuzz0b (= 8.3.0-2),
libhogweed6 (= 3.9.1-2),
libhttp-date-perl (= 6.06-1),
libhttp-message-perl (= 6.45-1),
libice6 (= 2:1.0.10-1),
libicu-dev (= 72.1-4),
libicu72 (= 72.1-4),
libidn2-0 (= 2.3.4-1),
libio-html-perl (= 1.004-3),
libisl23 (= 0.26-3),
libjansson4 (= 2.14-2),
libjbig0 (= 2.1-6.1),
libjpeg-dev (= 1:2.1.5-2),
libjpeg62-turbo (= 1:2.1.5-2),
libjpeg62-turbo-dev (= 1:2.1.5-2),
libk5crypto3 (= 1.20.1-5),
libkeyutils1 (= 1.6.3-2),
libkrb5-3 (= 1.20.1-5),
libkrb5support0 (= 1.20.1-5),
liblapack-dev (= 3.11.0-2),
liblapack3 (= 3.11.0-2),
libldap-2.5-0 (= 2.5.13+dfsg-5+rpi1+b1),
liblerc4 (= 4.0.0+ds-4),
liblwp-mediatypes-perl (= 6.04-2),
liblz4-1 (= 1.9.4-1+rpi1+b1),
liblzma-dev (= 5.4.5-0.3),
liblzma5 (= 5.4.5-0.3),
libmagic-mgc (= 1:5.45-2),
libmagic1 (= 1:5.45-2),
libmd0 (= 1.1.0-2),
libmodule-implementation-perl (= 0.09-2),
libmodule-runtime-conflicts-perl (= 0.003-2),
libmodule-runtime-perl (= 0.016-2),
libmoose-perl (= 2.2207-1),
libmount1 (= 2.39.3-6),
libmpc3 (= 1.3.1-1),
libmpfr6 (= 4.2.1-1),
libmro-compat-perl (= 0.15-2),
libnamespace-clean-perl (= 0.27-2),
libncurses-dev (= 6.4+20240113-1),
libncurses6 (= 6.4+20240113-1),
libncursesw6 (= 6.4+20240113-1),
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libnghttp2-14 (= 1.58.0-1),
libnsl-dev (= 1.3.0-3),
libnsl2 (= 1.3.0-3),
libnumber-compare-perl (= 0.03-3),
libp11-kit0 (= 0.25.3-4),
libpackage-deprecationmanager-perl (= 0.18-1),
libpackage-stash-perl (= 0.40-1),
libpackage-stash-xs-perl (= 0.30-1+b2),
libpam-modules (= 1.5.2-9.1),
libpam-modules-bin (= 1.5.2-9.1),
libpam-runtime (= 1.5.2-9.1),
libpam0g (= 1.5.2-9.1),
libpango-1.0-0 (= 1.51.0+ds-4),
libpangocairo-1.0-0 (= 1.51.0+ds-4),
libpangoft2-1.0-0 (= 1.51.0+ds-4),
libpaper-utils (= 1.1.29),
libpaper1 (= 1.1.29),
libparams-classify-perl (= 0.015-2+b2),
libparams-util-perl (= 1.102-2+b2),
libpcre2-16-0 (= 10.42-4),
libpcre2-32-0 (= 10.42-4),
libpcre2-8-0 (= 10.42-4),
libpcre2-dev (= 10.42-4),
libpcre2-posix3 (= 10.42-4),
libperl5.38 (= 5.38.2-3),
libpipeline1 (= 1.5.7-1),
libpixman-1-0 (= 0.42.2-1),
libpkgconf3 (= 1.8.1-1),
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librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
libsasl2-2 (= 2.1.28+dfsg1-4),
libsasl2-modules-db (= 2.1.28+dfsg1-4),
libseccomp2 (= 2.5.4-2+rpi1),
libselinux1 (= 3.5-1),
libsframe1 (= 2.41-6+rpi1),
libsharpyuv0 (= 1.3.2-0.3),
libsm6 (= 2:1.2.3-1),
libsmartcols1 (= 2.39.3-6),
libssh2-1 (= 1.11.0-4),
libssl3 (= 3.1.4-2),
libstdc++-13-dev (= 13.2.0-9+rpi1),
libstdc++6 (= 13.2.0-9+rpi1),
libsub-exporter-perl (= 0.990-1),
libsub-exporter-progressive-perl (= 0.001013-3),
libsub-identify-perl (= 0.14-3+b1),
libsub-install-perl (= 0.929-1),
libsub-name-perl (= 0.27-1+b1),
libsub-override-perl (= 0.10-1),
libswitch-perl (= 2.17-3),
libsystemd0 (= 254.5-1+rpi1),
libtasn1-6 (= 4.19.0-3),
libtcl8.6 (= 8.6.13+dfsg-2),
libtext-glob-perl (= 0.11-3),
libthai-data (= 0.1.29-2),
libthai0 (= 0.1.29-2),
libtiff6 (= 4.5.1+git230720-3),
libtimedate-perl (= 2.3300-2),
libtinfo6 (= 6.4+20240113-1),
libtirpc-common (= 1.3.4+ds-1),
libtirpc-dev (= 1.3.4+ds-1),
libtirpc3 (= 1.3.4+ds-1),
libtk8.6 (= 8.6.13-2),
libtool (= 2.4.7-7),
libtry-tiny-perl (= 0.31-2),
libubsan1 (= 13.2.0-9+rpi1),
libuchardet0 (= 0.0.8-1),
libudev1 (= 254.5-1+rpi1),
libunistring5 (= 1.1-2),
liburi-perl (= 5.21-1),
libuuid1 (= 2.39.3-6),
libvariable-magic-perl (= 0.63-1+b2),
libwebp7 (= 1.3.2-0.3),
libwww-curl-perl (= 4.17-10+b1),
libwww-curl-simple-perl (= 0.100191-3),
libx11-6 (= 2:1.8.7-1),
libx11-data (= 2:1.8.7-1),
libxau6 (= 1:1.0.9-1),
libxcb-render0 (= 1.15-1),
libxcb-shm0 (= 1.15-1),
libxcb1 (= 1.15-1),
libxdmcp6 (= 1:1.1.2-3),
libxext6 (= 2:1.3.4-1),
libxft2 (= 2.3.6-1),
libxml2 (= 2.9.14+dfsg-1.3),
libxmuu1 (= 2:1.1.3-3),
libxrender1 (= 1:0.9.10-1.1),
libxss1 (= 1:1.2.3-1),
libxt6 (= 1:1.2.1-1.1),
libzstd1 (= 1.5.5+dfsg2-2),
linux-libc-dev (= 6.5.6-1+rpi1+b1),
littler (= 0.3.19-1),
login (= 1:4.13+dfsg1-3),
lsb-base (= 11.6+rpi1),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.12.0-3),
mawk (= 1.3.4.20231126-1),
ncurses-base (= 6.4+20240113-1),
ncurses-bin (= 6.4+20240113-1),
openssl (= 3.1.4-2),
patch (= 2.7.6-7),
perl (= 5.38.2-3),
perl-base (= 5.38.2-3),
perl-modules-5.38 (= 5.38.2-3),
pkg-config (= 1.8.1-1),
pkgconf (= 1.8.1-1),
pkgconf-bin (= 1.8.1-1),
po-debconf (= 1.0.21+nmu1),
r-base-core (= 4.3.2-1),
r-base-dev (= 4.3.2-1),
r-bioc-biocgenerics (= 0.48.1-2),
r-bioc-limma (= 3.58.1+dfsg-1),
r-cran-lattice (= 0.22-5-1),
r-cran-littler (= 0.3.19-1),
r-cran-locfit (= 1.5-9.8-1),
r-cran-pkgkitten (= 0.2.3-1),
r-cran-rcpp (= 1.0.12-1),
r-cran-statmod (= 1.5.0-1),
readline-common (= 8.2-3),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-2),
sensible-utils (= 0.0.20),
sysvinit-utils (= 3.08-5),
tar (= 1.35+dfsg-3),
tzdata (= 2023d-1),
ucf (= 3.0043+nmu1),
unzip (= 6.0-28),
usr-is-merged (= 38),
usrmerge (= 38),
util-linux (= 2.39.3-6),
x11-common (= 1:7.7+23),
xauth (= 1:1.1.2-1),
xdg-utils (= 1.1.3-4.1),
xz-utils (= 5.4.5-0.3),
zip (= 3.0-13),
zlib1g (= 1:1.3.dfsg-3),
zlib1g-dev (= 1:1.3.dfsg-3)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
LC_COLLATE="C.UTF-8"
SOURCE_DATE_EPOCH="1706198357"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-edger-dbgsym_4.0.12+dfsg-1_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 313924 bytes: control archive=540 bytes.
396 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-edger-dbgsym
Source: r-bioc-edger
Version: 4.0.12+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 360
Depends: r-bioc-edger (= 4.0.12+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-edger
Build-Ids: 24c7da80c03332044df6ed171cbc36ecb9c51c4d
drwxr-xr-x root/root 0 2024-01-25 15:59 ./
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/debug/.build-id/24/
-rw-r--r-- root/root 357520 2024-01-25 15:59 ./usr/lib/debug/.build-id/24/c7da80c03332044df6ed171cbc36ecb9c51c4d.debug
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/share/
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-01-25 15:59 ./usr/share/doc/r-bioc-edger-dbgsym -> r-bioc-edger
r-bioc-edger_4.0.12+dfsg-1_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 1132768 bytes: control archive=1748 bytes.
1098 bytes, 17 lines control
2301 bytes, 30 lines md5sums
Package: r-bioc-edger
Version: 4.0.12+dfsg-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 1435
Depends: r-api-4.0, r-api-bioc-3.18, r-bioc-limma (>= 3.41.5), r-cran-locfit, r-cran-rcpp, libblas3 | libblas.so.3, libc6 (>= 2.29), libgcc-s1 (>= 3.5), liblapack3 | liblapack.so.3, libstdc++6 (>= 13.1)
Suggests: r-cran-jsonlite, r-cran-readr, r-bioc-rhdf5, r-cran-knitr, r-bioc-annotationdbi, r-bioc-biobase, r-bioc-biocstyle, r-bioc-summarizedexperiment, r-bioc-org.hs.eg.db, r-cran-matrix, r-cran-seuratobject
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/edgeR/
Description: Empirical analysis of digital gene expression data in R
Bioconductor package for differential expression analysis of whole
transcriptome sequencing (RNA-seq) and digital gene expression
profiles with biological replication. It uses empirical Bayes
estimation and exact tests based on the negative binomial
distribution. It is also useful for differential signal analysis with
other types of genome-scale count data.
drwxr-xr-x root/root 0 2024-01-25 15:59 ./
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/R/
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/
-rw-r--r-- root/root 1819 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/CITATION
-rw-r--r-- root/root 2230 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/DESCRIPTION
-rw-r--r-- root/root 9600 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/INDEX
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/Meta/
-rw-r--r-- root/root 5342 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/Meta/Rd.rds
-rw-r--r-- root/root 123 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/Meta/features.rds
-rw-r--r-- root/root 5158 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/Meta/hsearch.rds
-rw-r--r-- root/root 2644 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/Meta/links.rds
-rw-r--r-- root/root 1503 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/Meta/nsInfo.rds
-rw-r--r-- root/root 1801 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/Meta/package.rds
-rw-r--r-- root/root 244 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/Meta/vignette.rds
-rw-r--r-- root/root 5639 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/NAMESPACE
-rw-r--r-- root/root 40115 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/NEWS.Rd
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/R/
-rw-r--r-- root/root 1058 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/R/edgeR
-rw-r--r-- root/root 601206 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/R/edgeR.rdb
-rw-r--r-- root/root 4254 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/R/edgeR.rdx
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/doc/
-rw-r--r-- root/root 207 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/doc/edgeRUsersGuide.Rnw
-rw-r--r-- root/root 1858 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/doc/index.html
-rw-r--r-- root/root 260 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/doc/intro.R
-rw-r--r-- root/root 3080 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/doc/intro.Rmd
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/help/
-rw-r--r-- root/root 7720 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/help/AnIndex
-rw-r--r-- root/root 2176 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/help/aliases.rds
-rw-r--r-- root/root 412510 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/help/edgeR.rdb
-rw-r--r-- root/root 2640 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/help/edgeR.rdx
-rw-r--r-- root/root 1150 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/help/paths.rds
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/html/
-rw-r--r-- root/root 41647 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/html/00Index.html
-rw-r--r-- root/root 1844 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/html/R.css
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/libs/
-rw-r--r-- root/root 273348 2024-01-25 15:59 ./usr/lib/R/site-library/edgeR/libs/edgeR.so
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/share/
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/share/doc/r-bioc-edger/
-rw-r--r-- root/root 530 2024-01-25 15:59 ./usr/share/doc/r-bioc-edger/README.Debian
-rw-r--r-- root/root 1369 2024-01-25 15:59 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
-rw-r--r-- root/root 1492 2024-01-25 15:59 ./usr/share/doc/r-bioc-edger/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 6504
Build-Time: 104
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 97
Job: r-bioc-edger_4.0.12+dfsg-1
Machine Architecture: arm64
Package: r-bioc-edger
Package-Time: 210
Source-Version: 4.0.12+dfsg-1
Space: 6504
Status: successful
Version: 4.0.12+dfsg-1
--------------------------------------------------------------------------------
Finished at 2024-01-28T23:57:17Z
Build needed 00:03:30, 6504k disk space