r-bioc-edger →
3.2.4~dfsg-1 →
armhf → 2013-08-17 15:40:15
sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on testwandboard
╔══════════════════════════════════════════════════════════════════════════════╗
║ r-bioc-edger 3.2.4~dfsg-1 (armhf) 17 Aug 2013 15:20 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-edger
Version: 3.2.4~dfsg-1
Source Version: 3.2.4~dfsg-1
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/r-bioc-edger-qmQ9fj/r-bioc-edger-3.2.4~dfsg' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/r-bioc-edger-qmQ9fj' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-1d6eb527-133f-448e-9c27-9b43ff2ea534' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 jessie-staging Release.gpg [490 B]
Get:2 http://172.17.0.1 jessie-staging Release [10.8 kB]
Get:3 http://172.17.0.1 jessie-staging/main Sources [6716 kB]
Get:4 http://172.17.0.1 jessie-staging/main armhf Packages [7886 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
Fetched 14.6 MB in 38s (380 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
─────────
Checking available source versions...
Download source files with APT
──────────────────────────────
Reading package lists...
Building dependency tree...
NOTICE: 'r-bioc-edger' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/r-bioc-edger.git
Need to get 428 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main r-bioc-edger 3.2.4~dfsg-1 (dsc) [2120 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main r-bioc-edger 3.2.4~dfsg-1 (tar) [422 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main r-bioc-edger 3.2.4~dfsg-1 (diff) [4414 B]
Fetched 428 kB in 0s (552 kB/s)
Download complete and in download only mode
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-NiZpJz/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 35 not upgraded.
Need to get 0 B/704 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11383 files and directories currently installed.)
Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev, r-bioc-limma
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev, r-bioc-limma
dpkg-deb: building package `sbuild-build-depends-r-bioc-edger-dummy' in `/«BUILDDIR»/resolver-wK2lY9/apt_archive/sbuild-build-depends-r-bioc-edger-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-edger build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils cdbs debhelper file fontconfig fontconfig-config
fonts-dejavu-core gcc-4.8-base gettext gettext-base gfortran gfortran-4.6
groff-base intltool-debian libasprintf0c2 libblas-dev libblas3 libbz2-dev
libcairo2 libcroco3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6
libgcc1 libgfortran3 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0a
libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1
libncurses5-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0
libpng12-0 libpng12-dev libreadline-dev libreadline6-dev libsm6 libstdc++6
libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 libx11-6
libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
r-base-dev r-bioc-limma tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
xdg-utils zip zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts dh-make gettext-doc
gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
r-mathlib r-base-html texlive-base texlive-latex-base
texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
texi2html tcl-tclreadline gvfs-bin
Recommended packages:
autotools-dev curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl
r-recommended r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
bsdmainutils cdbs debhelper file fontconfig fontconfig-config
fonts-dejavu-core gettext gettext-base gfortran gfortran-4.6 groff-base
intltool-debian libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2
libcroco3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6
libgfortran3 libglib2.0-0 libgraphite2-3 libharfbuzz0a libice6 libjbig0
libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0
libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0
libtiff5 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev
r-bioc-limma sbuild-build-depends-r-bioc-edger-dummy tcl8.5 tk8.5
ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
The following packages will be upgraded:
gcc-4.8-base libgcc1 libgomp1 libstdc++6
4 upgraded, 83 newly installed, 0 to remove and 31 not upgraded.
Need to get 56.7 MB/56.7 MB of archives.
After this operation, 110 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ jessie-staging/main libgomp1 armhf 4.8.1-6+rpi1 [28.0 kB]
Get:2 http://172.17.0.1/private/ jessie-staging/main gcc-4.8-base armhf 4.8.1-6+rpi1 [150 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main libstdc++6 armhf 4.8.1-6+rpi1 [300 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main libgcc1 armhf 1:4.8.1-6+rpi1 [54.3 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main libpipeline1 armhf 1.2.4-1 [36.9 kB]
Get:6 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.22.2-3 [666 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.5 [206 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.6.5-2 [949 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.18.3-1 [29.4 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 1:5.14-2 [213 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.9.1+dfsg1-3 [836 kB]
Get:12 http://172.17.0.1/private/ jessie-staging/main libexpat1 armhf 2.1.0-4 [117 kB]
Get:13 http://172.17.0.1/private/ jessie-staging/main libfreetype6 armhf 2.4.9-1.1 [401 kB]
Get:14 http://172.17.0.1/private/ jessie-staging/main ucf all 3.0027+nmu1 [70.6 kB]
Get:15 http://172.17.0.1/private/ jessie-staging/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main fontconfig-config all 2.10.2-2 [251 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main libfontconfig1 armhf 2.10.2-2 [306 kB]
Get:19 http://172.17.0.1/private/ jessie-staging/main libpixman-1-0 armhf 0.26.0-4 [413 kB]
Get:20 http://172.17.0.1/private/ jessie-staging/main libpng12-0 armhf 1.2.49-4 [179 kB]
Get:21 http://172.17.0.1/private/ jessie-staging/main libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:22 http://172.17.0.1/private/ jessie-staging/main libxdmcp6 armhf 1:1.1.1-1 [24.6 kB]
Get:23 http://172.17.0.1/private/ jessie-staging/main libxcb1 armhf 1.9.1-3 [43.3 kB]
Get:24 http://172.17.0.1/private/ jessie-staging/main libx11-data all 2:1.6.0-1 [191 kB]
Get:25 http://172.17.0.1/private/ jessie-staging/main libx11-6 armhf 2:1.6.0-1 [857 kB]
Get:26 http://172.17.0.1/private/ jessie-staging/main libxcb-render0 armhf 1.9.1-3 [16.8 kB]
Get:27 http://172.17.0.1/private/ jessie-staging/main libxcb-shm0 armhf 1.9.1-3 [10.4 kB]
Get:28 http://172.17.0.1/private/ jessie-staging/main libxext6 armhf 2:1.3.2-1 [51.1 kB]
Get:29 http://172.17.0.1/private/ jessie-staging/main libxrender1 armhf 1:0.9.8-1 [30.4 kB]
Get:30 http://172.17.0.1/private/ jessie-staging/main libcairo2 armhf 1.12.14-4 [936 kB]
Get:31 http://172.17.0.1/private/ jessie-staging/main libffi6 armhf 3.0.13-4 [19.8 kB]
Get:32 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.36.3-3 [1905 kB]
Get:33 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.8-2 [119 kB]
Get:34 http://172.17.0.1/private/ jessie-staging/main libdatrie1 armhf 0.2.6-2 [27.0 kB]
Get:35 http://172.17.0.1/private/ jessie-staging/main libgfortran3 armhf 4.8.1-6+rpi1 [229 kB]
Get:36 http://172.17.0.1/private/ jessie-staging/main libgraphite2-3 armhf 1.2.3-1 [55.0 kB]
Get:37 http://172.17.0.1/private/ jessie-staging/main libharfbuzz0a armhf 0.9.19-1 [432 kB]
Get:38 http://172.17.0.1/private/ jessie-staging/main x11-common all 1:7.7+3 [284 kB]
Get:39 http://172.17.0.1/private/ jessie-staging/main libice6 armhf 2:1.0.8-2 [56.2 kB]
Get:40 http://172.17.0.1/private/ jessie-staging/main libjpeg8 armhf 8d-1 [132 kB]
Get:41 http://172.17.0.1/private/ jessie-staging/main libthai-data all 0.1.19-2 [156 kB]
Get:42 http://172.17.0.1/private/ jessie-staging/main libthai0 armhf 0.1.19-2 [40.5 kB]
Get:43 http://172.17.0.1/private/ jessie-staging/main fontconfig armhf 2.10.2-2 [374 kB]
Get:44 http://172.17.0.1/private/ jessie-staging/main libpango-1.0-0 armhf 1.32.5-5 [251 kB]
Get:45 http://172.17.0.1/private/ jessie-staging/main libpangoft2-1.0-0 armhf 1.32.5-5 [186 kB]
Get:46 http://172.17.0.1/private/ jessie-staging/main libpangocairo-1.0-0 armhf 1.32.5-5 [176 kB]
Get:47 http://172.17.0.1/private/ jessie-staging/main libpaper1 armhf 1.1.24+nmu2 [20.9 kB]
Get:48 http://172.17.0.1/private/ jessie-staging/main libpcrecpp0 armhf 1:8.31-2 [125 kB]
Get:49 http://172.17.0.1/private/ jessie-staging/main libsm6 armhf 2:1.2.1-2 [32.5 kB]
Get:50 http://172.17.0.1/private/ jessie-staging/main libjbig0 armhf 2.0-2 [31.5 kB]
Get:51 http://172.17.0.1/private/ jessie-staging/main libtiff5 armhf 4.0.3-1 [226 kB]
Get:52 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5 [408 kB]
Get:53 http://172.17.0.1/private/ jessie-staging/main libxft2 armhf 2.3.1-1 [55.4 kB]
Get:54 http://172.17.0.1/private/ jessie-staging/main libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:55 http://172.17.0.1/private/ jessie-staging/main libxt6 armhf 1:1.1.3-1+deb7u1 [181 kB]
Get:56 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.14-2 [53.8 kB]
Get:57 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.18.3-1 [136 kB]
Get:58 http://172.17.0.1/private/ jessie-staging/main cdbs all 0.4.122 [81.4 kB]
Get:59 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.18.3-1 [1837 kB]
Get:60 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:61 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu2 [223 kB]
Get:62 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20130630 [710 kB]
Get:63 http://172.17.0.1/private/ jessie-staging/main gfortran-4.6 armhf 4.6.4-2+rpi1 [4757 kB]
Get:64 http://172.17.0.1/private/ jessie-staging/main gfortran armhf 4:4.6.3-8 [1134 B]
Get:65 http://172.17.0.1/private/ jessie-staging/main libblas3 armhf 1.2.20110419-5 [201 kB]
Get:66 http://172.17.0.1/private/ jessie-staging/main libblas-dev armhf 1.2.20110419-5 [206 kB]
Get:67 http://172.17.0.1/private/ jessie-staging/main libbz2-dev armhf 1.0.6-4 [33.9 kB]
Get:68 http://172.17.0.1/private/ jessie-staging/main libjpeg8-dev armhf 8d-1 [238 kB]
Get:69 http://172.17.0.1/private/ jessie-staging/main liblapack3 armhf 3.4.2+dfsg-1 [3584 kB]
Get:70 http://172.17.0.1/private/ jessie-staging/main liblapack-dev armhf 3.4.2+dfsg-1 [3890 kB]
Get:71 http://172.17.0.1/private/ jessie-staging/main libtinfo-dev armhf 5.9+20130608-1 [92.5 kB]
Get:72 http://172.17.0.1/private/ jessie-staging/main libncurses5-dev armhf 5.9+20130608-1 [201 kB]
Get:73 http://172.17.0.1/private/ jessie-staging/main libpaper-utils armhf 1.1.24+nmu2 [17.9 kB]
Get:74 http://172.17.0.1/private/ jessie-staging/main libpcre3-dev armhf 1:8.31-2 [350 kB]
Get:75 http://172.17.0.1/private/ jessie-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-1 [212 kB]
Get:76 http://172.17.0.1/private/ jessie-staging/main libpng12-dev armhf 1.2.49-4 [260 kB]
Get:77 http://172.17.0.1/private/ jessie-staging/main libreadline6-dev armhf 6.2+dfsg-0.1 [164 kB]
Get:78 http://172.17.0.1/private/ jessie-staging/main libreadline-dev armhf 6.2+dfsg-0.1 [898 B]
Get:79 http://172.17.0.1/private/ jessie-staging/main zip armhf 3.0-7 [333 kB]
Get:80 http://172.17.0.1/private/ jessie-staging/main unzip armhf 6.0-9 [193 kB]
Get:81 http://172.17.0.1/private/ jessie-staging/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
Get:82 http://172.17.0.1/private/ jessie-staging/main tcl8.5 armhf 8.5.14-2 [1579 kB]
Get:83 http://172.17.0.1/private/ jessie-staging/main tk8.5 armhf 8.5.14-2 [1123 kB]
Get:84 http://172.17.0.1/private/ jessie-staging/main r-base-core armhf 3.0.1-6 [21.2 MB]
Get:85 http://172.17.0.1/private/ jessie-staging/main r-base-dev all 3.0.1-6 [3898 B]
Get:86 http://172.17.0.1/private/ jessie-staging/main r-bioc-limma armhf 3.16.7~dfsg-1 [864 kB]
debconf: delaying package configuration, since apt-utils is not installed
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(Reading database ... 11383 files and directories currently installed.)
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Selecting previously unselected package libpipeline1:armhf.
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Setting up libgomp1:armhf (4.8.1-6+rpi1) ...
Setting up libpipeline1:armhf (1.2.4-1) ...
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Setting up libpixman-1-0:armhf (0.26.0-4) ...
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Setting up libffi6:armhf (3.0.13-4) ...
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Setting up x11-common (1:7.7+3) ...
All runlevel operations denied by policy
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Setting up fontconfig (2.10.2-2) ...
Regenerating fonts cache... done.
Setting up libpango-1.0-0:armhf (1.32.5-5) ...
Setting up libpangoft2-1.0-0:armhf (1.32.5-5) ...
Setting up libpangocairo-1.0-0:armhf (1.32.5-5) ...
Setting up libpaper1:armhf (1.1.24+nmu2) ...
Creating config file /etc/papersize with new version
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Setting up gfortran (4:4.6.3-8) ...
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Setting up libblas3 (1.2.20110419-5) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libblas-dev (1.2.20110419-5) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libbz2-dev:armhf (1.0.6-4) ...
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Setting up liblapack3 (3.4.2+dfsg-1) ...
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Setting up liblapack-dev (3.4.2+dfsg-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up libtinfo-dev:armhf (5.9+20130608-1) ...
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Setting up libpaper-utils (1.1.24+nmu2) ...
Setting up libpcre3-dev:armhf (1:8.31-2) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-1) ...
Setting up libpng12-dev (1.2.49-4) ...
Setting up libreadline6-dev:armhf (6.2+dfsg-0.1) ...
Setting up libreadline-dev:armhf (6.2+dfsg-0.1) ...
Setting up zip (3.0-7) ...
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Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
Setting up tcl8.5 (8.5.14-2) ...
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Setting up tk8.5 (8.5.14-2) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
Setting up r-base-core (3.0.1-6) ...
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (3.0.1-6) ...
Setting up r-bioc-limma (3.16.7~dfsg-1) ...
Setting up sbuild-build-depends-r-bioc-edger-dummy (0.invalid.0) ...
Processing triggers for libc-bin ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.0.35-wand5.2 armhf (armv7l)
Toolchain package versions: binutils_2.23.52.20130612-1 dpkg-dev_1.16.10 g++-4.6_4.6.4-2+rpi1 gcc-4.6_4.6.4-2+rpi1 libc6-dev_2.17-6+rpi1 libstdc++6_4.8.1-6+rpi1 libstdc++6-4.6-dev_4.6.4-2+rpi1 linux-libc-dev_3.2.41-2+rpi1
Package versions: apt_0.9.7.8+rpi1 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.23.52.20130612-1 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.4 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.122 coreutils_8.13-3.5 cpio_2.11+dfsg-1 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2+rpi1 dash_0.5.7-3 debconf_1.5.50 debconf-i18n_1.5.50 debfoster_2.7-1.2 debhelper_9.20130630 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-2 findutils_4.4.2-5 fontconfig_2.10.2-2 fontconfig-config_2.10.2-2 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.6.3-8 g++-4.6_4.6.4-2+rpi1 gcc_4:4.6.3-8 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.4-2+rpi1 gcc-4.6-base_4.6.4-2+rpi1 gcc-4.7-base_4.7.3-4+rpi1 gcc-4.8-base_4.8.1-6+rpi1 gettext_0.18.3-1 gettext-base_0.18.3-1 gfortran_4:4.6.3-8 gfortran-4.6_4.6.4-2+rpi1 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-2 groff-base_1.22.2-3 gzip_1.6-1 hostname_3.13 initramfs-tools_0.113 initscripts_2.88dsf-41 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.1-3.1+rpi1 kmod_9-3 libacl1_2.2.52-1 libapt-pkg4.12_0.9.7.8+rpi1 libasprintf0c2_0.18.3-1 libattr1_1:2.4.47-1 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.4 libbz2-1.0_1.0.6-4 libbz2-dev_1.0.6-4 libc-bin_2.17-6+rpi1 libc-dev-bin_2.17-6+rpi1 libc6_2.17-6+rpi1 libc6-dev_2.17-6+rpi1 libcairo2_1.12.14-4 libcap2_1:2.22-1.2 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1.1 libcroco3_0.6.8-2 libdatrie1_0.2.6-2 libdb5.1_5.1.29-6 libdbus-1-3_1.6.12-1 libdpkg-perl_1.16.10 libexpat1_2.1.0-4 libffi6_3.0.13-4 libfontconfig1_2.10.2-2 libfreetype6_2.4.9-1.1 libgc1c2_1:7.1-9.1 libgcc1_1:4.8.1-6+rpi1 libgdbm3_1.8.3-12 libgfortran3_4.8.1-6+rpi1 libglib2.0-0_2.36.3-3 libgmp10_2:5.1.2+dfsg-1 libgomp1_4.8.1-6+rpi1 libgraphite2-3_1.2.3-1 libharfbuzz0a_0.9.19-1 libice6_2:1.0.8-2 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 libklibc_2.0.1-3.1+rpi1 libkmod2_9-3 liblapack-dev_3.4.2+dfsg-1 liblapack3_3.4.2+dfsg-1 liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-2 libmount1_2.20.1-5.4 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130608-1 libncurses5-dev_5.9+20130608-1 libncursesw5_5.9+20130608-1 libnih-dbus1_1.0.3-4.1+b1 libnih1_1.0.3-4.1+b1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpango-1.0-0_1.32.5-5 libpangocairo-1.0-0_1.32.5-5 libpangoft2-1.0-0_1.32.5-5 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.4-1 libpixman-1-0_0.26.0-4 libpng12-0_1.2.49-4 libpng12-dev_1.2.49-4 libprocps0_1:3.3.4-2 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libselinux1_2.1.13-2 libsemanage-common_2.1.10-2 libsemanage1_2.1.10-2 libsepol1_2.1.9-2 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.5-1.1 libstdc++6_4.8.1-6+rpi1 libstdc++6-4.6-dev_4.6.4-2+rpi1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.19-2 libthai0_0.1.19-2 libtiff5_4.0.3-1 libtimedate-perl_1.2000-1 libtinfo-dev_5.9+20130608-1 libtinfo5_5.9+20130608-1 libudev0_175-7.2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.2 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.4 libx11-6_2:1.6.0-1 libx11-data_2:1.6.0-1 libxau6_1:1.0.8-1 libxcb-render0_1.9.1-3 libxcb-shm0_1.9.1-3 libxcb1_1.9.1-3 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.2-1 libxft2_2.3.1-1 libxml2_2.9.1+dfsg1-3 libxrender1_1:0.9.8-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1+deb7u1 linux-libc-dev_3.2.41-2+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian8+rpi1 make_3.81-8.2 makedev_2.3.1-93 man-db_2.6.5-2 mawk_1.3.3-17 mount_2.20.1-5.4 mountall_2.48 multiarch-support_2.17-6+rpi1 ncurses-base_5.9+20130608-1 ncurses-bin_5.9+20130608-1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-21+rpi1 perl-base_5.14.2-21+rpi1 perl-modules_5.14.2-21+rpi1 plymouth_0.8.8-6+deb8u1 po-debconf_1.0.16+nmu2 procps_1:3.3.4-2 r-base-core_3.0.1-6 r-base-dev_3.0.1-6 r-bioc-limma_3.16.7~dfsg-1 raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-edger-dummy_0.invalid.0 sed_4.2.2-1 sensible-utils_0.0.9 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-6 tcl8.5_8.5.14-2 tk8.5_8.5.14-2 ttf-dejavu-core_2.33+svn2514-3 tzdata_2013c-2 ucf_3.0027+nmu1 udev_175-7.2 unzip_6.0-9 util-linux_2.20.1-5.4 x11-common_1:7.7+3 xdg-utils_1.1.0~rc1+git20111210-7 xz-utils_5.1.1alpha+20120614-2 zip_3.0-7 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Mon Aug 5 10:33:15 2013 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./r-bioc-edger_3.2.4~dfsg-1.dsc
dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-3.2.4~dfsg
dpkg-source: info: unpacking r-bioc-edger_3.2.4~dfsg.orig.tar.gz
dpkg-source: info: unpacking r-bioc-edger_3.2.4~dfsg-1.debian.tar.gz
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=POSIX
LOGNAME=root
MAIL=/var/mail/root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/root
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-1d6eb527-133f-448e-9c27-9b43ff2ea534
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
SHLVL=1
SSH_CLIENT=192.168.1.2 45346 22
SSH_CONNECTION=192.168.1.2 45346 192.168.1.46 22
SSH_TTY=/dev/pts/1
TERM=xterm
USER=root
_=/etc/init.d/buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-edger
dpkg-buildpackage: source version 3.2.4~dfsg-1
dpkg-source --before-build r-bioc-edger-3.2.4~dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
test -x debian/rules
dh_clean
rm -f debian/r-bioc-edger.substvars
rm -f debian/r-bioc-edger.*.debhelper
rm -rf debian/r-bioc-edger/
rm -f debian/*.debhelper.log
rm -f debian/files
find . \( \( -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} \; \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
rm -f *-stamp
if test -d src; then \
find src -regex ".*\.o" | \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
debian/rules build-arch
test -x debian/rules
mkdir -p "."
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
fakeroot debian/rules binary-arch
test -x debian/rules
dh_testroot
dh_prep
rm -f debian/r-bioc-edger.substvars
rm -f debian/r-bioc-edger.*.debhelper
rm -rf debian/r-bioc-edger/
dh_installdirs -A
install -d debian/r-bioc-edger
mkdir -p "."
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
dh_installdirs usr/lib/R/site-library
install -d debian/r-bioc-edger/usr/lib/R/site-library
echo "R:Depends=r-base-core (>= 3.0.1-6)" >> debian/r-bioc-edger.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-edger/usr/lib/R/site-library --clean \
. ; \
else \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-edger/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'edgeR' ...
** libs
make[1]: Entering directory `/«PKGBUILDDIR»/src'
g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_exact_test_by_deviance.cpp -o R_exact_test_by_deviance.o
g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_loess_by_col.cpp -o R_loess_by_col.o
g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_cr_adjust.cpp -o R_cr_adjust.o
g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_levenberg.cpp -o R_levenberg.o
g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_maximize_interpolant.cpp -o R_maximize_interpolant.o
g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_one_group.cpp -o R_one_group.o
g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_simple_good_turing.cpp -o R_simple_good_turing.o
g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/adj_coxreid.cpp -o core/adj_coxreid.o
g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/glm_levenberg.cpp -o core/glm_levenberg.o
g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/glm_one_group.cpp -o core/glm_one_group.o
g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/interpolator.cpp -o core/interpolator.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/fmm_spline.c -o core/fmm_spline.o
g++ -shared -o edgeR.so R_exact_test_by_deviance.o R_loess_by_col.o R_cr_adjust.o R_levenberg.o R_maximize_interpolant.o R_one_group.o R_simple_good_turing.o core/adj_coxreid.o core/glm_levenberg.o core/glm_one_group.o core/interpolator.o core/fmm_spline.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
make[1]: Leaving directory `/«PKGBUILDDIR»/src'
make[1]: Entering directory `/«PKGBUILDDIR»/src'
make[1]: Leaving directory `/«PKGBUILDDIR»/src'
installing to /«PKGBUILDDIR»/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (edgeR)
rm -vf /«PKGBUILDDIR»/debian/r-bioc-edger/usr/lib/R/site-library/R.css \
/«PKGBUILDDIR»/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/COPYING \
/«PKGBUILDDIR»/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/LICENSE.txt
if test -f debian/overrides; then \
install -d /«PKGBUILDDIR»/debian/r-bioc-edger/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
/«PKGBUILDDIR»/debian/r-bioc-edger/usr/share/lintian/overrides/r-bioc-edger; \
fi
Adding cdbs dependencies to debian/r-bioc-edger.substvars
dh_installdirs -pr-bioc-edger
chmod 644 debian/r-bioc-edger/usr/lib/R/site-library/edgeR/doc/*
dh_installdocs -pr-bioc-edger
install -g 0 -o 0 -d debian/r-bioc-edger/usr/share/doc/r-bioc-edger
cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /«PKGBUILDDIR»/debian/r-bioc-edger/usr/share/doc/r-bioc-edger \;
cp -a debian/README.test debian/r-bioc-edger/usr/share/doc/r-bioc-edger
chown -R 0:0 debian/r-bioc-edger/usr/share/doc
chmod -R go=rX debian/r-bioc-edger/usr/share/doc
chmod -R u\+rw debian/r-bioc-edger/usr/share/doc
install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-edger/usr/share/doc/r-bioc-edger/README.Debian
install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-edger/usr/share/doc/r-bioc-edger/copyright
dh_installexamples -pr-bioc-edger
dh_installman -pr-bioc-edger
dh_installinfo -pr-bioc-edger
dh_installmenu -pr-bioc-edger
dh_installcron -pr-bioc-edger
dh_installinit -pr-bioc-edger
dh_installdebconf -pr-bioc-edger
install -o 0 -g 0 -d debian/r-bioc-edger/DEBIAN
dh_installemacsen -pr-bioc-edger
dh_installcatalogs -pr-bioc-edger
grep -s -v '^misc:Depends=' debian/r-bioc-edger.substvars > debian/r-bioc-edger.substvars.new || true
mv debian/r-bioc-edger.substvars.new debian/r-bioc-edger.substvars
dh_installpam -pr-bioc-edger
dh_installlogrotate -pr-bioc-edger
dh_installlogcheck -pr-bioc-edger
dh_installchangelogs -pr-bioc-edger
install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-edger/usr/share/doc/r-bioc-edger/changelog.Debian
dh_installudev -pr-bioc-edger
dh_lintian -pr-bioc-edger
dh_bugfiles -pr-bioc-edger
dh_install -pr-bioc-edger
dh_link -pr-bioc-edger
dh_installmime -pr-bioc-edger
dh_installgsettings -pr-bioc-edger
dh_strip -pr-bioc-edger
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
dh_compress -pr-bioc-edger
cd debian/r-bioc-edger
chmod a-x usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/changelog.Debian
gzip -9nf usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/changelog.Debian
cd '/«PKGBUILDDIR»'
dh_fixperms -pr-bioc-edger
find debian/r-bioc-edger -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/r-bioc-edger ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/r-bioc-edger/usr/share/doc -type f ! -regex 'debian/r-bioc-edger/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
find debian/r-bioc-edger/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
find debian/r-bioc-edger/usr/share/man debian/r-bioc-edger/usr/man/ debian/r-bioc-edger/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
find debian/r-bioc-edger -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
find debian/r-bioc-edger/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
find debian/r-bioc-edger/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
find debian/r-bioc-edger -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
find debian/r-bioc-edger/usr/lib/perl5 debian/r-bioc-edger/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
find debian/r-bioc-edger/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
dh_makeshlibs -pr-bioc-edger
rm -f debian/r-bioc-edger/DEBIAN/shlibs
dh_installdeb -pr-bioc-edger
dh_perl -pr-bioc-edger
dh_shlibdeps -pr-bioc-edger
dpkg-shlibdeps -Tdebian/r-bioc-edger.substvars debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so was not linked against libgfortran.so.3 (it uses none of the library's symbols)
dh_gencontrol -pr-bioc-edger
echo misc:Depends= >> debian/r-bioc-edger.substvars
dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-edger.substvars -Pdebian/r-bioc-edger
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
chmod 644 debian/r-bioc-edger/DEBIAN/control
chown 0:0 debian/r-bioc-edger/DEBIAN/control
dh_md5sums -pr-bioc-edger
(cd debian/r-bioc-edger >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
chmod 644 debian/r-bioc-edger/DEBIAN/md5sums
chown 0:0 debian/r-bioc-edger/DEBIAN/md5sums
dh_builddeb -pr-bioc-edger -- -Z xz
dpkg-deb -Z xz --build debian/r-bioc-edger ..
dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_3.2.4~dfsg-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-bioc-edger_3.2.4~dfsg-1_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build r-bioc-edger-3.2.4~dfsg
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20130817-1539
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
r-bioc-edger_3.2.4~dfsg-1_armhf.changes:
────────────────────────────────────────
Format: 1.8
Date: Mon, 05 Aug 2013 19:26:22 +0900
Source: r-bioc-edger
Binary: r-bioc-edger
Architecture: armhf
Version: 3.2.4~dfsg-1
Distribution: jessie-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Charles Plessy <plessy@debian.org>
Description:
r-bioc-edger - Empirical analysis of digital gene expression data in R
Changes:
r-bioc-edger (3.2.4~dfsg-1) unstable; urgency=low
.
543a589 Imported Upstream version 3.2.4~dfsg
846128f Normalised VCS URLs.
735a2e9 Signal autopkgtest suite with XS-Testsuite field.
a429231 Correct the autopkgtest as the test files are compressed.
Checksums-Sha1:
148b3c0b1cb2ea9b34cd7ced7890e3ebf7442ad8 581486 r-bioc-edger_3.2.4~dfsg-1_armhf.deb
Checksums-Sha256:
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Files:
e712166fb6d6e4d847401e87cdbc58b2 581486 gnu-r optional r-bioc-edger_3.2.4~dfsg-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
r-bioc-edger_3.2.4~dfsg-1_armhf.deb
───────────────────────────────────
new debian package, version 2.0.
size 581486 bytes: control archive=1826 bytes.
957 bytes, 17 lines control
2845 bytes, 37 lines md5sums
Package: r-bioc-edger
Version: 3.2.4~dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1541
Depends: r-base-core (>= 3.0.1-6), r-bioc-limma, libblas3 | libblas.so.3 | libatlas3-base, libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libgfortran3 (>= 4.3), liblapack3 | liblapack.so.3 | libatlas3-base, libstdc++6 (>= 4.4.0)
Suggests: r-cran-mass
Section: gnu-r
Priority: optional
Homepage: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
Description: Empirical analysis of digital gene expression data in R
Bioconductor package for differential expression analysis of whole
transcriptome sequencing (RNA-seq) and digital gene expression
profiles with biological replication. It uses empirical Bayes
estimation and exact tests based on the negative binomial
distribution. It is also useful for differential signal analysis with
other types of genome-scale count data.
drwxr-xr-x root/root 0 2013-08-17 15:38 ./
drwxr-xr-x root/root 0 2013-08-17 15:38 ./usr/
drwxr-xr-x root/root 0 2013-08-17 15:37 ./usr/lib/
drwxr-xr-x root/root 0 2013-08-17 15:37 ./usr/lib/R/
drwxr-xr-x root/root 0 2013-08-17 15:38 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/
-rw-r--r-- root/root 827 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/NAMESPACE
-rw-r--r-- root/root 1116 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/DESCRIPTION
drwxr-xr-x root/root 0 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/Meta/
-rw-r--r-- root/root 998 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/Meta/package.rds
-rw-r--r-- root/root 3637 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/Meta/Rd.rds
-rw-r--r-- root/root 3469 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/Meta/hsearch.rds
-rw-r--r-- root/root 1632 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/Meta/links.rds
-rw-r--r-- root/root 161 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/Meta/data.rds
-rw-r--r-- root/root 228 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/Meta/vignette.rds
-rw-r--r-- root/root 367 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/Meta/nsInfo.rds
drwxr-xr-x root/root 0 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/libs/
-rw-r--r-- root/root 36976 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/libs/edgeR.so
drwxr-xr-x root/root 0 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/R/
-rw-r--r-- root/root 1056 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/R/edgeR
-rw-r--r-- root/root 116233 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/R/edgeR.rdb
-rw-r--r-- root/root 2289 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/R/edgeR.rdx
drwxr-xr-x root/root 0 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/data/
-rw-r--r-- root/root 248500 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/data/NC1.txt
-rw-r--r-- root/root 228426 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/data/NC2.txt
-rw-r--r-- root/root 318545 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/data/Tu102.txt
-rw-r--r-- root/root 263571 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/data/Tu98.txt
-rw-r--r-- root/root 19 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/data/datalist
drwxr-xr-x root/root 0 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/doc/
-rw-r--r-- root/root 1826 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
-rw-r--r-- root/root 49354 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/doc/edgeR.pdf
-rw-r--r-- root/root 691 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/doc/index.html
-rw-r--r-- root/root 2057 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/CITATION
-rw-r--r-- root/root 14719 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/NEWS.Rd
drwxr-xr-x root/root 0 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/help/
-rw-r--r-- root/root 777 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/help/paths.rds
-rw-r--r-- root/root 231413 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/help/edgeR.rdb
-rw-r--r-- root/root 1759 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/help/edgeR.rdx
-rw-r--r-- root/root 3768 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/help/AnIndex
-rw-r--r-- root/root 1321 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/help/aliases.rds
drwxr-xr-x root/root 0 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/html/
-rw-r--r-- root/root 22632 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/html/00Index.html
-rw-r--r-- root/root 1179 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/html/R.css
-rw-r--r-- root/root 6806 2013-08-17 15:38 ./usr/lib/R/site-library/edgeR/INDEX
drwxr-xr-x root/root 0 2013-08-17 15:38 ./usr/share/
drwxr-xr-x root/root 0 2013-08-17 15:38 ./usr/share/doc/
drwxr-xr-x root/root 0 2013-08-17 15:38 ./usr/share/doc/r-bioc-edger/
drwxr-xr-x root/root 0 2013-08-17 15:38 ./usr/share/doc/r-bioc-edger/tests/
-rw-r--r-- root/root 5706 2013-04-08 00:02 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save.gz
-rw-r--r-- root/root 1392 2013-04-03 22:17 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R.gz
-rw-r--r-- root/root 437 2013-08-05 10:25 ./usr/share/doc/r-bioc-edger/README.test
-rw-r--r-- root/root 274 2013-08-05 10:02 ./usr/share/doc/r-bioc-edger/README.Debian
-rw-r--r-- root/root 1377 2013-08-05 10:08 ./usr/share/doc/r-bioc-edger/copyright
-rw-r--r-- root/root 1493 2013-08-05 10:26 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 3703
Build-Time: 100
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 956
Job: r-bioc-edger_3.2.4~dfsg-1
Machine Architecture: armhf
Package: r-bioc-edger
Package-Time: 1117
Source-Version: 3.2.4~dfsg-1
Space: 3703
Status: successful
Version: 3.2.4~dfsg-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20130817-1539
Build needed 00:18:37, 3703k disc space