r-bioc-degnorm →
1.8.1+ds-1 →
armhf → 2022-12-23 12:00:43
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| r-bioc-degnorm 1.8.1+ds-1 (armhf) Fri, 23 Dec 2022 10:59:30 +0000 |
+==============================================================================+
Package: r-bioc-degnorm
Version: 1.8.1+ds-1
Source Version: 1.8.1+ds-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-d15d3728-c46f-4672-9251-d67631cfcd7e' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.5 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.3 MB]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-degnorm' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-degnorm.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-degnorm.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1686 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main r-bioc-degnorm 1.8.1+ds-1 (dsc) [2383 B]
Get:2 http://172.17.4.1/private bookworm-staging/main r-bioc-degnorm 1.8.1+ds-1 (tar) [1681 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main r-bioc-degnorm 1.8.1+ds-1 (diff) [2740 B]
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Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-degnorm-oUotJO/r-bioc-degnorm-1.8.1+ds' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-degnorm-oUotJO' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-9DKt9k/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-9DKt9k/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-9DKt9k/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-9DKt9k/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-9DKt9k/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-9DKt9k/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-9DKt9k/apt_archive ./ Sources [349 B]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libldap-common libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 3 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-9DKt9k/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13212 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-rcpp (>= 1.0.2), r-bioc-genomicfeatures, r-cran-foreach, r-bioc-s4vectors, r-cran-doparallel, r-bioc-rsamtools, r-bioc-genomicalignments, r-cran-heatmaply, r-cran-data.table, r-cran-ggplot2, r-bioc-genomicranges, r-bioc-iranges, r-cran-plyr, r-cran-plotly, r-cran-viridis, r-cran-rcpparmadillo
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-rcpp (>= 1.0.2), r-bioc-genomicfeatures, r-cran-foreach, r-bioc-s4vectors, r-cran-doparallel, r-bioc-rsamtools, r-bioc-genomicalignments, r-cran-heatmaply, r-cran-data.table, r-cran-ggplot2, r-bioc-genomicranges, r-bioc-iranges, r-cran-plyr, r-cran-plotly, r-cran-viridis, r-cran-rcpparmadillo
dpkg-deb: building package 'sbuild-build-depends-r-bioc-degnorm-dummy' in '/<<BUILDDIR>>/resolver-9DKt9k/apt_archive/sbuild-build-depends-r-bioc-degnorm-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-degnorm-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-9DKt9k/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-9DKt9k/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-9DKt9k/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-9DKt9k/apt_archive ./ Sources [630 B]
Get:5 copy:/<<BUILDDIR>>/resolver-9DKt9k/apt_archive ./ Packages [714 B]
Fetched 2677 B in 1s (3515 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-degnorm build dependencies (apt-based resolver)
--------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libldap-common libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome
fonts-glyphicons-halflings fonts-mathjax gettext gettext-base gfortran
gfortran-12 groff-base icu-devtools intltool-debian javascript-common
libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.74-dev
libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim
libjs-highlight.js libjs-jquery libjs-jquery-datatables
libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax
libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify
libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3
liblerc4 liblua5.3-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc
libmagic1 libmd0 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16
libpsl5 libreadline-dev libregexp-ipv6-perl librtmp1 libsm6 libssh2-1
libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl
libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool
libtry-tiny-perl libuchardet0 liburi-perl libuv1 libvariable-magic-perl
libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 libyaml-0-2 littler m4 man-db
node-bootstrap-sass node-html5shiv node-normalize.css openssl pandoc
pandoc-data pkg-config pkgconf pkgconf-bin po-debconf r-base-core r-base-dev
r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics
r-bioc-biocio r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings
r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges
r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib
r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors
r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-askpass
r-cran-assertthat r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64
r-cran-bitops r-cran-blob r-cran-bslib r-cran-ca r-cran-cachem r-cran-callr
r-cran-cli r-cran-cluster r-cran-codetools r-cran-colorspace
r-cran-colourpicker r-cran-commonmark r-cran-cpp11 r-cran-crayon
r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr
r-cran-dendextend r-cran-digest r-cran-doparallel r-cran-dplyr r-cran-egg
r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap
r-cran-filelock r-cran-fontawesome r-cran-foreach r-cran-formatr r-cran-fs
r-cran-futile.logger r-cran-futile.options r-cran-gclus r-cran-generics
r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-heatmaply
r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv
r-cran-httr r-cran-isoband r-cran-iterators r-cran-jquerylib r-cran-jsonlite
r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice
r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass
r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime
r-cran-miniui r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar
r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-plotly r-cran-plyr
r-cran-png r-cran-prettyunits r-cran-processx r-cran-progress
r-cran-promises r-cran-ps r-cran-purrr r-cran-qap r-cran-r6 r-cran-rappdirs
r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl
r-cran-registry r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang
r-cran-rmarkdown r-cran-rsqlite r-cran-sass r-cran-scales r-cran-seriation
r-cran-shiny r-cran-shinyjs r-cran-snow r-cran-sourcetools r-cran-stringi
r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect
r-cran-tinytex r-cran-tsp r-cran-utf8 r-cran-vctrs r-cran-viridis
r-cran-viridislite r-cran-webshot r-cran-withr r-cran-xfun r-cran-xml
r-cran-xml2 r-cran-xtable r-cran-yaml ucf unzip x11-common xauth xdg-utils
zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make
postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-12-doc libcoarrays-dev groff apache2 | lighttpd
| httpd liblapack-doc libboost-doc libboost1.74-doc libboost-atomic1.74-dev
libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev
libboost-contract1.74-dev libboost-coroutine1.74-dev
libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev
libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
libboost-program-options1.74-dev libboost-python1.74-dev
libboost-random1.74-dev libboost-regex1.74-dev
libboost-serialization1.74-dev libboost-stacktrace1.74-dev
libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
low-memory-monitor icu-doc libjs-jquery-ui-docs fonts-mathjax-extras
fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc libscalar-number-perl
readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl
libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser nodejs
texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc
texlive-latex-extra context wkhtmltopdf librsvg2-bin ghc php python ruby
libjs-katex citation-style-language-styles libmail-box-perl elpa-ess
r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texinfo r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db
r-bioc-graph r-bioc-biocstyle r-bioc-all r-cran-testthat r-bioc-affy
r-bioc-deseq2 r-bioc-annotate r-cran-batchjobs r-cran-bbmisc r-cran-rmpi
r-bioc-variantannotation r-bioc-shortread r-cran-batchtools r-cran-mockery
r-cran-webmockr r-bioc-bsgenome r-bioc-hdf5array r-bioc-genefilter
r-cran-lobstr r-bioc-delayedmatrixstats r-bioc-edger r-bioc-ensembldb
r-bioc-annotationfilter r-cran-markdown r-bioc-gviz r-bioc-annotationhub
r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-limma r-bioc-rhdf5 r-cran-covr
r-cran-roxygen2 r-cran-ff r-cran-rgl r-cran-vcd r-cran-rprojroot
r-cran-spelling r-cran-rstudioapi r-cran-whoami r-cran-kernsmooth
r-cran-kernlab r-cran-mvtnorm r-cran-jpeg r-cran-bench r-cran-desc
r-cran-r.utils r-cran-xts r-cran-nanotime r-cran-zoo r-cran-rmysql
r-cran-ape r-cran-gplots r-cran-dynamictreecut r-cran-corrplot r-cran-fpc
r-cran-circlize r-cran-unitizer r-cran-forcats r-cran-waldo r-cran-profvis
r-cran-lubridate r-cran-cairo r-cran-ragg r-cran-readr r-cran-magick
r-cran-sf r-cran-r.rsp r-cran-reticulate r-cran-gridsvg r-cran-lintr
r-cran-tidyverse r-cran-getopt r-cran-r.devices r-cran-formattable
r-cran-palmerpenguins r-cran-survival r-cran-units r-cran-vdiffr
r-cran-ggally r-cran-devtools r-cran-broom r-cran-irdisplay r-cran-itertools
r-cran-pingr r-cran-inline r-cran-usethis r-cran-downlit r-cran-gert
r-cran-gh r-cran-rvest r-cran-dichromat r-cran-rtsne r-cran-dbscan
r-cran-rlecuyer r-cran-brio r-cran-pkgbuild r-cran-pkgload r-cran-sp
r-cran-maps r-cran-maptools r-cran-pkgdown r-cran-zeallot r-cran-remotes
r-cran-plm
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs node-jquery
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html r-cran-testthat
r-cran-thematic r-cran-cliapp r-cran-mockery r-cran-decor r-cran-brio
r-cran-webutils r-cran-rmysql r-cran-rpostgresql r-cran-pvclust r-cran-runit
r-cran-caret r-cran-mlbench r-cran-rpart r-cran-bench r-cran-broom
r-cran-covr r-cran-lobstr r-cran-rsvg r-cran-testit r-cran-survival
r-cran-pkgload r-cran-ragg r-cran-hexbin r-cran-hmisc r-cran-interp
r-cran-mapproj r-cran-maps r-cran-maptools r-cran-multcomp r-cran-quantreg
r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-markdown r-cran-sp
r-cran-tikzdevice node-highlight.js r-cran-sodium r-cran-lubridate
r-cran-ggthemes r-cran-rsclient r-cran-rversions r-cran-domc r-cran-abind
r-cran-future r-cran-tufte r-cran-dygraphs r-cran-rsconnect r-cran-dbitest
r-cran-mockr r-cran-formattable r-cran-waldo libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome
fonts-glyphicons-halflings fonts-mathjax gettext gettext-base gfortran
gfortran-12 groff-base icu-devtools intltool-debian javascript-common
libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.74-dev
libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim
libjs-highlight.js libjs-jquery libjs-jquery-datatables
libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax
libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify
libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3
liblerc4 liblua5.3-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc
libmagic1 libmd0 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16
libpsl5 libreadline-dev libregexp-ipv6-perl librtmp1 libsm6 libssh2-1
libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl
libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool
libtry-tiny-perl libuchardet0 liburi-perl libuv1 libvariable-magic-perl
libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 libyaml-0-2 littler m4 man-db
node-bootstrap-sass node-html5shiv node-normalize.css openssl pandoc
pandoc-data pkg-config pkgconf pkgconf-bin po-debconf r-base-core r-base-dev
r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics
r-bioc-biocio r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings
r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges
r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib
r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors
r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-askpass
r-cran-assertthat r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64
r-cran-bitops r-cran-blob r-cran-bslib r-cran-ca r-cran-cachem r-cran-callr
r-cran-cli r-cran-cluster r-cran-codetools r-cran-colorspace
r-cran-colourpicker r-cran-commonmark r-cran-cpp11 r-cran-crayon
r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr
r-cran-dendextend r-cran-digest r-cran-doparallel r-cran-dplyr r-cran-egg
r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap
r-cran-filelock r-cran-fontawesome r-cran-foreach r-cran-formatr r-cran-fs
r-cran-futile.logger r-cran-futile.options r-cran-gclus r-cran-generics
r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-heatmaply
r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv
r-cran-httr r-cran-isoband r-cran-iterators r-cran-jquerylib r-cran-jsonlite
r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice
r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass
r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime
r-cran-miniui r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar
r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-plotly r-cran-plyr
r-cran-png r-cran-prettyunits r-cran-processx r-cran-progress
r-cran-promises r-cran-ps r-cran-purrr r-cran-qap r-cran-r6 r-cran-rappdirs
r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl
r-cran-registry r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang
r-cran-rmarkdown r-cran-rsqlite r-cran-sass r-cran-scales r-cran-seriation
r-cran-shiny r-cran-shinyjs r-cran-snow r-cran-sourcetools r-cran-stringi
r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect
r-cran-tinytex r-cran-tsp r-cran-utf8 r-cran-vctrs r-cran-viridis
r-cran-viridislite r-cran-webshot r-cran-withr r-cran-xfun r-cran-xml
r-cran-xml2 r-cran-xtable r-cran-yaml
sbuild-build-depends-r-bioc-degnorm-dummy ucf unzip x11-common xauth
xdg-utils zip zlib1g-dev
0 upgraded, 359 newly installed, 0 to remove and 3 not upgraded.
Need to get 281 MB of archives.
After this operation, 928 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-9DKt9k/apt_archive ./ sbuild-build-depends-r-bioc-degnorm-dummy 0.invalid.0 [1000 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-4 [78.8 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.1-1 [1341 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.7-1 [1349 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-10 [156 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-10 [495 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.3 [81.1 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-2 [19.4 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-2 [8556 B]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14+20220924-2 [93.1 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1 [570 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-10 [1203 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.3 [942 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf unzip armhf 6.0-27 [152 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-2 [109 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.39-2 [258 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [352 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config armhf 2.13.1-4.5 [281 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.5 [330 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-1 [112 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.8.1-2 [308 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.8.1-2 [704 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-7 [482 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.51.0-1 [60.5 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.86.0-2 [322 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.74.1-2 [1214 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-10+rpi1 [238 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-2 [1587 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.5 [416 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 5.2.0-2+b1 [1832 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.50.10+ds-1 [214 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.50.10+ds-1 [68.6 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.50.10+ds-1 [58.3 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-1 [906 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-2 [133 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2+b1 [237 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-6 [278 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.13-1 [680 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.1-1 [159 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf r-base-core armhf 4.2.2.20221110-1 [25.6 MB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-12-dev armhf 12.2.0-10+rpi1 [285 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf gfortran-12 armhf 12.2.0-10+rpi1 [7508 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf gfortran armhf 4:12.2.0-1+rpi1 [1432 B]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.1-2 [114 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.1-2 [2847 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3+20220423-2 [79.6 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libncurses-dev armhf 6.3+20220423-2 [289 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.3+20220423-2 [940 B]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libreadline-dev armhf 8.2-1.2 [122 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.2-1 [261 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.2-1 [74.7 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.40-3 [209 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.40-3 [199 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-posix3 armhf 10.40-3 [53.2 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.40-3 [644 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-14 [239 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-14 [232 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-14 [150 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-14 [569 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [901 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.39-2 [336 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.4.0-0.1 [240 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 72.1-3 [175 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 72.1-3 [9959 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf xauth armhf 1:1.1.1-1 [36.9 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libpkgconf3 armhf 1.8.0-11 [30.8 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf pkgconf-bin armhf 1.8.0-11 [27.6 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf pkgconf armhf 1.8.0-11 [25.6 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 1.8.0-11 [13.4 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf r-base-dev all 4.2.2.20221110-1 [4488 B]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-2 [10.5 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf libregexp-ipv6-perl all 0.03-3 [5212 B]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf liburi-perl all 5.17-1 [90.4 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libhttp-message-perl all 6.44-1 [81.7 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-3 [9724 B]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-2+b1 [12.2 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-2 [16.8 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2200-1+b2 [794 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-3 [10.6 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.86.0-2 [318 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-8+b1 [55.9 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-2 [164 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf fonts-mathjax all 2.7.9+dfsg-1 [2210 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf javascript-common all 11+nmu1 [6260 B]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-17+b1 [9508 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf libboost-dev armhf 1.74.0.3+b4 [4824 B]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf libjs-bootstrap all 3.4.1+dfsg-2 [173 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf libjs-popper.js all 1.16.1+ds-6 [52.4 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf libjs-d3 all 3.5.17-4 [132 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf libjs-es5-shim all 4.6.7-2 [47.4 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf libjs-json all 0~20210531+~1.0.8-1 [20.7 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf libjs-mathjax all 2.7.9+dfsg-1 [5667 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf libjs-modernizr all 2.6.2+ds1-5 [47.1 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf liblua5.3-0 armhf 5.3.6-2 [98.3 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf libuv1 armhf 1.44.2-1+rpi1 [125 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf libyaml-0-2 armhf 0.2.5-1 [44.6 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf r-cran-littler armhf 0.3.17-1 [92.5 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf littler all 0.3.17-1 [14.4 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf node-bootstrap-sass all 3.4.3-2 [186 kB]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf node-html5shiv all 3.7.3+dfsg-5 [13.2 kB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf node-normalize.css all 8.0.1-5 [12.7 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf pandoc-data all 2.17.1.1-1.1 [417 kB]
Get:205 http://172.17.4.1/private bookworm-staging/main armhf pandoc armhf 2.17.1.1-1.1 [25.9 MB]
Get:206 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocgenerics all 0.44.0-2 [600 kB]
Get:207 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biobase armhf 2.58.0-2 [2111 kB]
Get:208 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-s4vectors armhf 0.36.1-1 [2037 kB]
Get:209 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-iranges armhf 2.32.0-1 [2214 kB]
Get:210 http://172.17.4.1/private bookworm-staging/main armhf r-cran-dbi all 1.1.3-1 [687 kB]
Get:211 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bit armhf 4.0.5-1 [1066 kB]
Get:212 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bit64 armhf 4.0.5-1 [463 kB]
Get:213 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rlang armhf 1.0.6-1 [1621 kB]
Get:214 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cli armhf 3.4.1-1 [1242 kB]
Get:215 http://172.17.4.1/private bookworm-staging/main armhf r-cran-glue armhf 1.6.2-1 [152 kB]
Get:216 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB]
Get:217 http://172.17.4.1/private bookworm-staging/main armhf r-cran-vctrs armhf 0.5.1-1 [1318 kB]
Get:218 http://172.17.4.1/private bookworm-staging/main armhf r-cran-blob all 1.2.3-1 [49.5 kB]
Get:219 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fastmap armhf 1.1.0-1 [63.1 kB]
Get:220 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cachem armhf 1.0.6-1 [70.5 kB]
Get:221 http://172.17.4.1/private bookworm-staging/main armhf r-cran-memoise all 2.0.1-1 [53.8 kB]
Get:222 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:223 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgkitten all 0.2.2-2 [27.0 kB]
Get:224 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcpp armhf 1.0.9-1 [2036 kB]
Get:225 http://172.17.4.1/private bookworm-staging/main armhf r-cran-plogr all 0.2.0-3 [14.9 kB]
Get:226 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rsqlite armhf 2.2.19-1 [1005 kB]
Get:227 http://172.17.4.1/private bookworm-staging/main armhf r-cran-curl armhf 4.3.3+dfsg-1 [152 kB]
Get:228 http://172.17.4.1/private bookworm-staging/main armhf r-cran-jsonlite armhf 1.8.4+dfsg-1 [439 kB]
Get:229 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mime armhf 0.12-1 [35.6 kB]
Get:230 http://172.17.4.1/private bookworm-staging/main armhf r-cran-sys armhf 3.4.1-1 [42.4 kB]
Get:231 http://172.17.4.1/private bookworm-staging/main armhf r-cran-askpass armhf 1.1-2 [22.3 kB]
Get:232 http://172.17.4.1/private bookworm-staging/main armhf r-cran-openssl armhf 2.0.5+dfsg-1 [388 kB]
Get:233 http://172.17.4.1/private bookworm-staging/main armhf r-cran-r6 all 2.5.1-1 [105 kB]
Get:234 http://172.17.4.1/private bookworm-staging/main armhf r-cran-httr all 1.4.4+dfsg-1 [467 kB]
Get:235 http://172.17.4.1/private bookworm-staging/main armhf r-cran-png armhf 0.1-8-1 [40.2 kB]
Get:236 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-zlibbioc all 1.44.0+dfsg-1 [9200 B]
Get:237 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-xvector armhf 0.38.0-1 [606 kB]
Get:238 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:239 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcurl armhf 1.98-1.9+dfsg-1 [776 kB]
Get:240 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomeinfodbdata all 1.2.9-1 [11.7 MB]
Get:241 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomeinfodb all 1.34.4-1 [3921 kB]
Get:242 http://172.17.4.1/private bookworm-staging/main armhf r-cran-crayon all 1.5.2-1 [165 kB]
Get:243 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biostrings armhf 2.66.0-1 [13.8 MB]
Get:244 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-keggrest all 1.38.0+dfsg-1 [179 kB]
Get:245 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-annotationdbi all 1.60.0-1 [4696 kB]
Get:246 http://172.17.4.1/private bookworm-staging/main armhf r-cran-assertthat all 0.2.1-2 [56.5 kB]
Get:247 http://172.17.4.1/private bookworm-staging/main armhf r-cran-generics all 0.1.3-1 [81.4 kB]
Get:248 http://172.17.4.1/private bookworm-staging/main armhf r-cran-magrittr armhf 2.0.3-1 [200 kB]
Get:249 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fansi armhf 1.0.3-1 [611 kB]
Get:250 http://172.17.4.1/private bookworm-staging/main armhf r-cran-utf8 armhf 1.2.2-1 [129 kB]
Get:251 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pillar all 1.8.1+dfsg-1 [463 kB]
Get:252 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tibble armhf 3.1.8+dfsg-1 [516 kB]
Get:253 http://172.17.4.1/private bookworm-staging/main armhf r-cran-withr all 2.5.0-1 [236 kB]
Get:254 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tidyselect armhf 1.2.0+dfsg-1 [222 kB]
Get:255 http://172.17.4.1/private bookworm-staging/main armhf r-cran-dplyr armhf 1.0.10-1 [1230 kB]
Get:256 http://172.17.4.1/private bookworm-staging/main armhf r-cran-purrr armhf 0.3.5-1 [400 kB]
Get:257 http://172.17.4.1/private bookworm-staging/main armhf r-cran-dbplyr all 2.2.1+dfsg-1 [947 kB]
Get:258 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rappdirs armhf 0.3.3-1 [47.3 kB]
Get:259 http://172.17.4.1/private bookworm-staging/main armhf r-cran-filelock armhf 1.0.2-2 [24.2 kB]
Get:260 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocfilecache all 2.6.0+dfsg-2 [296 kB]
Get:261 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocio all 1.8.0+dfsg-1 [201 kB]
Get:262 http://172.17.4.1/private bookworm-staging/main armhf r-cran-formatr all 1.12-1 [151 kB]
Get:263 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:264 http://172.17.4.1/private bookworm-staging/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:265 http://172.17.4.1/private bookworm-staging/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:266 http://172.17.4.1/private bookworm-staging/main armhf r-cran-snow all 1:0.4.4-2 [98.9 kB]
Get:267 http://172.17.4.1/private bookworm-staging/main armhf r-cran-codetools all 0.2-18-1 [91.8 kB]
Get:268 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bh all 1.74.0-2 [5524 B]
Get:269 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cpp11 all 0.4.3-1 [223 kB]
Get:270 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocparallel armhf 1.32.4-1 [1313 kB]
Get:271 http://172.17.4.1/private bookworm-staging/main armhf r-cran-xml armhf 3.99-0.13-1 [1722 kB]
Get:272 http://172.17.4.1/private bookworm-staging/main armhf r-cran-ellipsis armhf 0.3.2-2 [35.1 kB]
Get:273 http://172.17.4.1/private bookworm-staging/main armhf r-cran-hms all 1.1.2-1 [104 kB]
Get:274 http://172.17.4.1/private bookworm-staging/main armhf r-cran-prettyunits all 1.1.1-2 [39.1 kB]
Get:275 http://172.17.4.1/private bookworm-staging/main armhf r-cran-progress all 1.2.2-2 [88.9 kB]
Get:276 http://172.17.4.1/private bookworm-staging/main armhf r-cran-stringi armhf 1.7.8-1+b1 [837 kB]
Get:277 http://172.17.4.1/private bookworm-staging/main armhf r-cran-stringr all 1.4.1-1 [202 kB]
Get:278 http://172.17.4.1/private bookworm-staging/main armhf r-cran-digest armhf 0.6.31-1 [177 kB]
Get:279 http://172.17.4.1/private bookworm-staging/main armhf r-cran-xml2 armhf 1.3.3-1 [276 kB]
Get:280 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biomart all 2.54.0+dfsg-1 [442 kB]
Get:281 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lattice armhf 0.20-45-3 [1176 kB]
Get:282 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrix armhf 1.5-1-1 [3685 kB]
Get:283 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrixstats armhf 0.63.0-1 [453 kB]
Get:284 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-matrixgenerics all 1.10.0-1 [302 kB]
Get:285 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-delayedarray armhf 0.24.0+dfsg-1 [1925 kB]
Get:286 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomicranges armhf 1.50.1+dfsg-1 [1797 kB]
Get:287 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-summarizedexperiment all 1.28.0+dfsg-1 [2018 kB]
Get:288 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-rhtslib armhf 2.0.0+dfsg-1 [1189 kB]
Get:289 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-rsamtools armhf 2.14.0-1 [3675 kB]
Get:290 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomicalignments armhf 1.34.0-1 [2109 kB]
Get:291 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rjson armhf 0.2.21-1 [137 kB]
Get:292 http://172.17.4.1/private bookworm-staging/main armhf r-cran-yaml armhf 2.3.6-1 [92.2 kB]
Get:293 http://172.17.4.1/private bookworm-staging/main armhf r-cran-restfulr armhf 0.0.15-1 [348 kB]
Get:294 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-rtracklayer armhf 1.58.0-1 [5072 kB]
Get:295 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomicfeatures all 1.50.2+dfsg-1 [1665 kB]
Get:296 http://172.17.4.1/private bookworm-staging/main armhf r-cran-base64enc armhf 0.1-3-3 [27.8 kB]
Get:297 http://172.17.4.1/private bookworm-staging/main armhf r-cran-htmltools armhf 0.5.4-1 [368 kB]
Get:298 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fs armhf 1.5.2+dfsg-1 [224 kB]
Get:299 http://172.17.4.1/private bookworm-staging/main armhf r-cran-sass armhf 0.4.4+dfsg-1 [826 kB]
Get:300 http://172.17.4.1/private bookworm-staging/main armhf r-cran-jquerylib all 0.1.4+dfsg-4 [13.1 kB]
Get:301 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bslib all 0.4.2+dfsg-1 [3773 kB]
Get:302 http://172.17.4.1/private bookworm-staging/main armhf r-cran-ca all 0.71.1-2 [242 kB]
Get:303 http://172.17.4.1/private bookworm-staging/main armhf r-cran-ps armhf 1.7.2-1 [308 kB]
Get:304 http://172.17.4.1/private bookworm-staging/main armhf r-cran-processx armhf 3.8.0-1 [336 kB]
Get:305 http://172.17.4.1/private bookworm-staging/main armhf r-cran-callr all 3.7.2-1 [418 kB]
Get:306 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cluster armhf 2.1.4-1 [563 kB]
Get:307 http://172.17.4.1/private bookworm-staging/main armhf r-cran-colorspace armhf 2.0-3+dfsg-1 [1697 kB]
Get:308 http://172.17.4.1/private bookworm-staging/main armhf r-cran-gtable all 0.3.1+dfsg-1 [165 kB]
Get:309 http://172.17.4.1/private bookworm-staging/main armhf r-cran-isoband armhf 0.2.6-1 [1759 kB]
Get:310 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mass armhf 7.3-58.1-1 [1126 kB]
Get:311 http://172.17.4.1/private bookworm-staging/main armhf r-cran-nlme armhf 3.1.161-1 [2248 kB]
Get:312 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mgcv armhf 1.8-41-1 [3132 kB]
Get:313 http://172.17.4.1/private bookworm-staging/main armhf r-cran-farver armhf 2.1.1-1 [1390 kB]
Get:314 http://172.17.4.1/private bookworm-staging/main armhf r-cran-labeling all 0.4.2-1 [62.7 kB]
Get:315 http://172.17.4.1/private bookworm-staging/main armhf r-cran-munsell all 0.5.0-2 [236 kB]
Get:316 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB]
Get:317 http://172.17.4.1/private bookworm-staging/main armhf r-cran-viridislite all 0.4.1-1 [1299 kB]
Get:318 http://172.17.4.1/private bookworm-staging/main armhf r-cran-scales all 1.2.1-1 [614 kB]
Get:319 http://172.17.4.1/private bookworm-staging/main armhf r-cran-ggplot2 all 3.3.6+dfsg-1 [3213 kB]
Get:320 http://172.17.4.1/private bookworm-staging/main armhf r-cran-evaluate all 0.19-1 [85.6 kB]
Get:321 http://172.17.4.1/private bookworm-staging/main armhf r-cran-xfun armhf 0.35+dfsg-1 [385 kB]
Get:322 http://172.17.4.1/private bookworm-staging/main armhf r-cran-highr all 0.9+dfsg-1 [38.6 kB]
Get:323 http://172.17.4.1/private bookworm-staging/main armhf r-cran-knitr all 1.41+dfsg-1 [896 kB]
Get:324 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tinytex all 0.42-1 [138 kB]
Get:325 http://172.17.4.1/private bookworm-staging/main armhf r-cran-later armhf 1.3.0+dfsg-1 [108 kB]
Get:326 http://172.17.4.1/private bookworm-staging/main armhf r-cran-promises armhf 1.2.0.1+dfsg-1 [270 kB]
Get:327 http://172.17.4.1/private bookworm-staging/main armhf r-cran-httpuv armhf 1.6.6+dfsg-1 [442 kB]
Get:328 http://172.17.4.1/private bookworm-staging/main armhf r-cran-xtable all 1:1.8-4-2 [689 kB]
Get:329 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fontawesome all 0.4.0-1 [1298 kB]
Get:330 http://172.17.4.1/private bookworm-staging/main armhf r-cran-sourcetools armhf 0.1.7-3 [43.3 kB]
Get:331 http://172.17.4.1/private bookworm-staging/main armhf r-cran-commonmark armhf 1.8.1-1 [97.6 kB]
Get:332 http://172.17.4.1/private bookworm-staging/main armhf r-cran-shiny all 1.7.3+dfsg-1 [2697 kB]
Get:333 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rmarkdown all 2.18+dfsg-1 [2269 kB]
Get:334 http://172.17.4.1/private bookworm-staging/main armhf r-cran-htmlwidgets all 1.6.0+dfsg-1 [120 kB]
Get:335 http://172.17.4.1/private bookworm-staging/main armhf r-cran-miniui all 0.1.1.1-3 [35.9 kB]
Get:336 http://172.17.4.1/private bookworm-staging/main armhf r-cran-shinyjs all 2.1.0-1 [1009 kB]
Get:337 http://172.17.4.1/private bookworm-staging/main armhf r-cran-colourpicker all 1.2.0+dfsg-1 [1165 kB]
Get:338 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lazyeval armhf 0.2.2-1+b1 [141 kB]
Get:339 http://172.17.4.1/private bookworm-staging/main armhf r-cran-crosstalk all 1.2.0+dfsg-1 [171 kB]
Get:340 http://172.17.4.1/private bookworm-staging/main armhf r-cran-data.table armhf 1.14.6+dfsg-1 [1688 kB]
Get:341 http://172.17.4.1/private bookworm-staging/main armhf r-cran-gridextra all 2.3-3 [1024 kB]
Get:342 http://172.17.4.1/private bookworm-staging/main armhf r-cran-viridis all 0.6.2-1 [2976 kB]
Get:343 http://172.17.4.1/private bookworm-staging/main armhf r-cran-dendextend all 1.16.0+dfsg-1 [1069 kB]
Get:344 http://172.17.4.1/private bookworm-staging/main armhf r-cran-iterators all 1.0.14-1 [337 kB]
Get:345 http://172.17.4.1/private bookworm-staging/main armhf r-cran-foreach all 1.5.2-1 [122 kB]
Get:346 http://172.17.4.1/private bookworm-staging/main armhf r-cran-doparallel all 1.0.17-1 [188 kB]
Get:347 http://172.17.4.1/private bookworm-staging/main armhf r-cran-egg all 0.4.5-3 [786 kB]
Get:348 http://172.17.4.1/private bookworm-staging/main armhf r-cran-gclus all 1.3.2-2 [406 kB]
Get:349 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tidyr armhf 1.2.1-1 [854 kB]
Get:350 http://172.17.4.1/private bookworm-staging/main armhf r-cran-plotly all 4.10.0+dfsg-1 [3279 kB]
Get:351 http://172.17.4.1/private bookworm-staging/main armhf r-cran-plyr armhf 1.8.8-1 [831 kB]
Get:352 http://172.17.4.1/private bookworm-staging/main armhf r-cran-reshape2 armhf 1.4.4-2 [110 kB]
Get:353 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tsp armhf 1.2-1-1 [908 kB]
Get:354 http://172.17.4.1/private bookworm-staging/main armhf r-cran-qap armhf 0.1-2-1 [344 kB]
Get:355 http://172.17.4.1/private bookworm-staging/main armhf r-cran-registry all 0.5-1-2 [202 kB]
Get:356 http://172.17.4.1/private bookworm-staging/main armhf r-cran-seriation armhf 1.4.0-1 [1147 kB]
Get:357 http://172.17.4.1/private bookworm-staging/main armhf r-cran-webshot all 0.5.4-1 [189 kB]
Get:358 http://172.17.4.1/private bookworm-staging/main armhf r-cran-heatmaply all 1.4.0+dfsg-1 [303 kB]
Get:359 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcpparmadillo armhf 0.11.4.2.1-1 [841 kB]
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invoke-rc.d: could not determine current runlevel
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Setting up r-cran-farver (2.1.1-1) ...
Setting up r-cran-formatr (1.12-1) ...
Setting up r-cran-xml (3.99-0.13-1) ...
Setting up r-cran-viridislite (0.4.1-1) ...
Setting up r-cran-cluster (2.1.4-1) ...
Setting up r-cran-lazyeval (0.2.2-1+b1) ...
Setting up r-cran-commonmark (1.8.1-1) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-cran-pkgkitten (0.2.2-2) ...
Setting up r-cran-ca (0.71.1-2) ...
Setting up r-cran-magrittr (2.0.3-1) ...
Setting up r-cran-rappdirs (0.3.3-1) ...
Setting up r-cran-filelock (1.0.2-2) ...
Setting up r-bioc-genomeinfodbdata (1.2.9-1) ...
Setting up r-cran-registry (0.5-1-2) ...
Setting up r-cran-littler (0.3.17-1) ...
Setting up r-cran-fs (1.5.2+dfsg-1) ...
Setting up r-cran-rcpp (1.0.9-1) ...
Setting up r-cran-curl (4.3.3+dfsg-1) ...
Setting up r-cran-codetools (0.2-18-1) ...
Setting up r-bioc-biocgenerics (0.44.0-2) ...
Setting up r-cran-rlang (1.0.6-1) ...
Setting up r-cran-matrixstats (0.63.0-1) ...
Setting up r-base-dev (4.2.2.20221110-1) ...
Setting up r-cran-assertthat (0.2.1-2) ...
Setting up littler (0.3.17-1) ...
Setting up r-bioc-matrixgenerics (1.10.0-1) ...
Setting up r-cran-xfun (0.35+dfsg-1) ...
Setting up r-cran-sys (3.4.1-1) ...
Setting up r-cran-gclus (1.3.2-2) ...
Setting up r-cran-plogr (0.2.0-3) ...
Setting up r-cran-withr (2.5.0-1) ...
Setting up r-cran-processx (3.8.0-1) ...
Setting up r-cran-mime (0.12-1) ...
Setting up r-cran-qap (0.1-2-1) ...
Setting up r-cran-generics (0.1.3-1) ...
Setting up r-cran-base64enc (0.1-3-3) ...
Setting up r-cran-iterators (1.0.14-1) ...
Setting up r-cran-digest (0.6.31-1) ...
Setting up r-cran-yaml (2.3.6-1) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-cran-xml2 (1.3.3-1) ...
Setting up r-cran-evaluate (0.19-1) ...
Setting up r-cran-dbi (1.1.3-1) ...
Setting up r-cran-highr (0.9+dfsg-1) ...
Setting up r-cran-foreach (1.5.2-1) ...
Setting up r-cran-prettyunits (1.1.1-2) ...
Setting up r-cran-fansi (1.0.3-1) ...
Setting up r-cran-mass (7.3-58.1-1) ...
Setting up r-cran-snow (1:0.4.4-2) ...
Setting up r-cran-data.table (1.14.6+dfsg-1) ...
Setting up r-cran-glue (1.6.2-1) ...
Setting up r-cran-bit (4.0.5-1) ...
Setting up r-cran-xtable (1:1.8-4-2) ...
Setting up r-cran-cli (3.4.1-1) ...
Setting up r-cran-lifecycle (1.0.3+dfsg-1) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-cran-bit64 (4.0.5-1) ...
Setting up r-bioc-zlibbioc (1.44.0+dfsg-1) ...
Setting up r-cran-askpass (1.1-2) ...
Setting up r-cran-fastmap (1.1.0-1) ...
Setting up r-cran-png (0.1-8-1) ...
Setting up r-bioc-biobase (2.58.0-2) ...
Setting up r-cran-jsonlite (1.8.4+dfsg-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-utf8 (1.2.2-1) ...
Setting up r-cran-colorspace (2.0-3+dfsg-1) ...
Setting up r-cran-stringi (1.7.8-1+b1) ...
Setting up r-cran-cpp11 (0.4.3-1) ...
Setting up r-cran-plyr (1.8.8-1) ...
Setting up r-cran-rcolorbrewer (1.1-3-1) ...
Setting up r-bioc-s4vectors (0.36.1-1) ...
Setting up r-cran-isoband (0.2.6-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up r-cran-gridextra (2.3-3) ...
Setting up r-cran-purrr (0.3.5-1) ...
Setting up r-cran-later (1.3.0+dfsg-1) ...
Setting up r-cran-matrix (1.5-1-1) ...
Setting up r-cran-doparallel (1.0.17-1) ...
Setting up r-cran-tinytex (0.42-1) ...
Setting up r-cran-mgcv (1.8-41-1) ...
Setting up r-cran-cachem (1.0.6-1) ...
Setting up r-cran-rcpparmadillo (0.11.4.2.1-1) ...
Setting up r-bioc-iranges (2.32.0-1) ...
Setting up dh-r (20210816) ...
Setting up r-cran-rjson (0.2.21-1) ...
Setting up r-cran-tsp (1.2-1-1) ...
Setting up r-cran-rcurl (1.98-1.9+dfsg-1) ...
Setting up r-cran-restfulr (0.0.15-1) ...
Setting up r-cran-vctrs (0.5.1-1) ...
Setting up r-bioc-delayedarray (0.24.0+dfsg-1) ...
Setting up r-cran-pillar (1.8.1+dfsg-1) ...
Setting up r-cran-ellipsis (0.3.2-2) ...
Setting up r-cran-openssl (2.0.5+dfsg-1) ...
Setting up r-cran-stringr (1.4.1-1) ...
Setting up r-bioc-biocparallel (1.32.4-1) ...
Setting up r-cran-callr (3.7.2-1) ...
Setting up r-bioc-rhtslib (2.0.0+dfsg-1) ...
Setting up r-cran-munsell (0.5.0-2) ...
Setting up r-cran-tibble (3.1.8+dfsg-1) ...
Setting up r-bioc-biocio (1.8.0+dfsg-1) ...
Setting up r-cran-tidyselect (1.2.0+dfsg-1) ...
Setting up r-cran-reshape2 (1.4.4-2) ...
Setting up r-bioc-genomeinfodb (1.34.4-1) ...
Setting up r-cran-httr (1.4.4+dfsg-1) ...
Setting up r-cran-hms (1.1.2-1) ...
Setting up r-cran-scales (1.2.1-1) ...
Setting up r-cran-memoise (2.0.1-1) ...
Setting up r-cran-promises (1.2.0.1+dfsg-1) ...
Setting up r-cran-blob (1.2.3-1) ...
Setting up r-cran-htmltools (0.5.4-1) ...
Setting up r-bioc-xvector (0.38.0-1) ...
Setting up r-cran-knitr (1.41+dfsg-1) ...
Setting up r-cran-sass (0.4.4+dfsg-1) ...
Setting up r-cran-seriation (1.4.0-1) ...
Setting up r-cran-dplyr (1.0.10-1) ...
Setting up r-cran-dbplyr (2.2.1+dfsg-1) ...
Setting up r-cran-rsqlite (2.2.19-1) ...
Setting up r-cran-progress (1.2.2-2) ...
Setting up r-cran-webshot (0.5.4-1) ...
Setting up r-bioc-biocfilecache (2.6.0+dfsg-2) ...
Setting up r-cran-ggplot2 (3.3.6+dfsg-1) ...
Setting up r-bioc-genomicranges (1.50.1+dfsg-1) ...
Setting up r-cran-httpuv (1.6.6+dfsg-1) ...
Setting up r-bioc-biostrings (2.66.0-1) ...
Setting up r-cran-fontawesome (0.4.0-1) ...
Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
Setting up r-cran-viridis (0.6.2-1) ...
Setting up r-cran-bslib (0.4.2+dfsg-1) ...
Setting up r-cran-tidyr (1.2.1-1) ...
Setting up r-bioc-rsamtools (2.14.0-1) ...
Setting up r-bioc-summarizedexperiment (1.28.0+dfsg-1) ...
Setting up r-cran-dendextend (1.16.0+dfsg-1) ...
Setting up r-bioc-keggrest (1.38.0+dfsg-1) ...
Setting up r-cran-egg (0.4.5-3) ...
Setting up r-bioc-annotationdbi (1.60.0-1) ...
Setting up r-cran-shiny (1.7.3+dfsg-1) ...
Setting up r-cran-shinyjs (2.1.0-1) ...
Setting up r-cran-miniui (0.1.1.1-3) ...
Setting up r-cran-rmarkdown (2.18+dfsg-1) ...
Setting up r-bioc-biomart (2.54.0+dfsg-1) ...
Setting up r-bioc-genomicalignments (1.34.0-1) ...
Setting up r-cran-crosstalk (1.2.0+dfsg-1) ...
Setting up r-bioc-rtracklayer (1.58.0-1) ...
Setting up r-bioc-genomicfeatures (1.50.2+dfsg-1) ...
Setting up r-cran-htmlwidgets (1.6.0+dfsg-1) ...
Setting up r-cran-colourpicker (1.2.0+dfsg-1) ...
Setting up r-cran-plotly (4.10.0+dfsg-1) ...
Setting up r-cran-heatmaply (1.4.0+dfsg-1) ...
Setting up sbuild-build-depends-r-bioc-degnorm-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.36-6+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.39.50.20221208-5+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-10+rpi1 gcc-12_12.2.0-10+rpi1 libc6-dev_2.36-6+rpi1 libstdc++-12-dev_12.2.0-10+rpi1 libstdc++6_12.2.0-10+rpi1 linux-libc-dev_6.0.12-1+rpi1
Package versions: adduser_3.129 apt_2.5.4 aptitude_0.8.13-5 aptitude-common_0.8.13-5 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2-2 binutils_2.39.50.20221208-5+rpi1 binutils-arm-linux-gnueabihf_2.39.50.20221208-5+rpi1 binutils-common_2.39.50.20221208-5+rpi1 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-10+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 dctrl-tools_2.24-3 debconf_1.5.80 debhelper_13.11.3 debianutils_5.7-0.4 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-1 dirmngr_2.2.40-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 fontconfig_2.13.1-4.5 fontconfig-config_2.13.1-4.5 fonts-dejavu-core_2.37-2 fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1 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libxrender1_1:0.9.10-1.1 libxss1_1:1.2.3-1 libxt6_1:1.2.1-1 libxxhash0_0.8.1-1 libyaml-0-2_0.2.5-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_6.0.12-1+rpi1 littler_0.3.17-1 login_1:4.13+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.1-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-4 nano_7.1-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.4 node-bootstrap-sass_3.4.3-2 node-html5shiv_3.7.3+dfsg-5 node-normalize.css_8.0.1-5 openssl_3.0.7-1 pandoc_2.17.1.1-1.1 pandoc-data_2.17.1.1-1.1 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-6 perl-base_5.36.0-6 perl-modules-5.36_5.36.0-6 pinentry-curses_1.2.1-1 pkg-config_1.8.0-11 pkgconf_1.8.0-11 pkgconf-bin_1.8.0-11 po-debconf_1.0.21+nmu1 r-base-core_4.2.2.20221110-1 r-base-dev_4.2.2.20221110-1 r-bioc-annotationdbi_1.60.0-1 r-bioc-biobase_2.58.0-2 r-bioc-biocfilecache_2.6.0+dfsg-2 r-bioc-biocgenerics_0.44.0-2 r-bioc-biocio_1.8.0+dfsg-1 r-bioc-biocparallel_1.32.4-1 r-bioc-biomart_2.54.0+dfsg-1 r-bioc-biostrings_2.66.0-1 r-bioc-delayedarray_0.24.0+dfsg-1 r-bioc-genomeinfodb_1.34.4-1 r-bioc-genomeinfodbdata_1.2.9-1 r-bioc-genomicalignments_1.34.0-1 r-bioc-genomicfeatures_1.50.2+dfsg-1 r-bioc-genomicranges_1.50.1+dfsg-1 r-bioc-iranges_2.32.0-1 r-bioc-keggrest_1.38.0+dfsg-1 r-bioc-matrixgenerics_1.10.0-1 r-bioc-rhtslib_2.0.0+dfsg-1 r-bioc-rsamtools_2.14.0-1 r-bioc-rtracklayer_1.58.0-1 r-bioc-s4vectors_0.36.1-1 r-bioc-summarizedexperiment_1.28.0+dfsg-1 r-bioc-xvector_0.38.0-1 r-bioc-zlibbioc_1.44.0+dfsg-1 r-cran-askpass_1.1-2 r-cran-assertthat_0.2.1-2 r-cran-base64enc_0.1-3-3 r-cran-bh_1.74.0-2 r-cran-bit_4.0.5-1 r-cran-bit64_4.0.5-1 r-cran-bitops_1.0-7-1 r-cran-blob_1.2.3-1 r-cran-bslib_0.4.2+dfsg-1 r-cran-ca_0.71.1-2 r-cran-cachem_1.0.6-1 r-cran-callr_3.7.2-1 r-cran-cli_3.4.1-1 r-cran-cluster_2.1.4-1 r-cran-codetools_0.2-18-1 r-cran-colorspace_2.0-3+dfsg-1 r-cran-colourpicker_1.2.0+dfsg-1 r-cran-commonmark_1.8.1-1 r-cran-cpp11_0.4.3-1 r-cran-crayon_1.5.2-1 r-cran-crosstalk_1.2.0+dfsg-1 r-cran-curl_4.3.3+dfsg-1 r-cran-data.table_1.14.6+dfsg-1 r-cran-dbi_1.1.3-1 r-cran-dbplyr_2.2.1+dfsg-1 r-cran-dendextend_1.16.0+dfsg-1 r-cran-digest_0.6.31-1 r-cran-doparallel_1.0.17-1 r-cran-dplyr_1.0.10-1 r-cran-egg_0.4.5-3 r-cran-ellipsis_0.3.2-2 r-cran-evaluate_0.19-1 r-cran-fansi_1.0.3-1 r-cran-farver_2.1.1-1 r-cran-fastmap_1.1.0-1 r-cran-filelock_1.0.2-2 r-cran-fontawesome_0.4.0-1 r-cran-foreach_1.5.2-1 r-cran-formatr_1.12-1 r-cran-fs_1.5.2+dfsg-1 r-cran-futile.logger_1.4.3-4 r-cran-futile.options_1.0.1-3 r-cran-gclus_1.3.2-2 r-cran-generics_0.1.3-1 r-cran-ggplot2_3.3.6+dfsg-1 r-cran-glue_1.6.2-1 r-cran-gridextra_2.3-3 r-cran-gtable_0.3.1+dfsg-1 r-cran-heatmaply_1.4.0+dfsg-1 r-cran-highr_0.9+dfsg-1 r-cran-hms_1.1.2-1 r-cran-htmltools_0.5.4-1 r-cran-htmlwidgets_1.6.0+dfsg-1 r-cran-httpuv_1.6.6+dfsg-1 r-cran-httr_1.4.4+dfsg-1 r-cran-isoband_0.2.6-1 r-cran-iterators_1.0.14-1 r-cran-jquerylib_0.1.4+dfsg-4 r-cran-jsonlite_1.8.4+dfsg-1 r-cran-knitr_1.41+dfsg-1 r-cran-labeling_0.4.2-1 r-cran-lambda.r_1.2.4-2 r-cran-later_1.3.0+dfsg-1 r-cran-lattice_0.20-45-3 r-cran-lazyeval_0.2.2-1+b1 r-cran-lifecycle_1.0.3+dfsg-1 r-cran-littler_0.3.17-1 r-cran-magrittr_2.0.3-1 r-cran-mass_7.3-58.1-1 r-cran-matrix_1.5-1-1 r-cran-matrixstats_0.63.0-1 r-cran-memoise_2.0.1-1 r-cran-mgcv_1.8-41-1 r-cran-mime_0.12-1 r-cran-miniui_0.1.1.1-3 r-cran-munsell_0.5.0-2 r-cran-nlme_3.1.161-1 r-cran-openssl_2.0.5+dfsg-1 r-cran-pillar_1.8.1+dfsg-1 r-cran-pkgconfig_2.0.3-2 r-cran-pkgkitten_0.2.2-2 r-cran-plogr_0.2.0-3 r-cran-plotly_4.10.0+dfsg-1 r-cran-plyr_1.8.8-1 r-cran-png_0.1-8-1 r-cran-prettyunits_1.1.1-2 r-cran-processx_3.8.0-1 r-cran-progress_1.2.2-2 r-cran-promises_1.2.0.1+dfsg-1 r-cran-ps_1.7.2-1 r-cran-purrr_0.3.5-1 r-cran-qap_0.1-2-1 r-cran-r6_2.5.1-1 r-cran-rappdirs_0.3.3-1 r-cran-rcolorbrewer_1.1-3-1 r-cran-rcpp_1.0.9-1 r-cran-rcpparmadillo_0.11.4.2.1-1 r-cran-rcurl_1.98-1.9+dfsg-1 r-cran-registry_0.5-1-2 r-cran-reshape2_1.4.4-2 r-cran-restfulr_0.0.15-1 r-cran-rjson_0.2.21-1 r-cran-rlang_1.0.6-1 r-cran-rmarkdown_2.18+dfsg-1 r-cran-rsqlite_2.2.19-1 r-cran-sass_0.4.4+dfsg-1 r-cran-scales_1.2.1-1 r-cran-seriation_1.4.0-1 r-cran-shiny_1.7.3+dfsg-1 r-cran-shinyjs_2.1.0-1 r-cran-snow_1:0.4.4-2 r-cran-sourcetools_0.1.7-3 r-cran-stringi_1.7.8-1+b1 r-cran-stringr_1.4.1-1 r-cran-sys_3.4.1-1 r-cran-tibble_3.1.8+dfsg-1 r-cran-tidyr_1.2.1-1 r-cran-tidyselect_1.2.0+dfsg-1 r-cran-tinytex_0.42-1 r-cran-tsp_1.2-1-1 r-cran-utf8_1.2.2-1 r-cran-vctrs_0.5.1-1 r-cran-viridis_0.6.2-1 r-cran-viridislite_0.4.1-1 r-cran-webshot_0.5.4-1 r-cran-withr_2.5.0-1 r-cran-xfun_0.35+dfsg-1 r-cran-xml_3.99-0.13-1 r-cran-xml2_1.3.3-1 r-cran-xtable_1:1.8-4-2 r-cran-yaml_2.3.6-1 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.2 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-degnorm-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 sysvinit-utils_3.05-7 tar_1.34+dfsg-1 tzdata_2022f-1 ucf_3.0043 unzip_6.0-27 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 x11-common_1:7.7+23 xauth_1:1.1.1-1 xdg-utils_1.1.3-4.1 xz-utils_5.4.0-0.1 zip_3.0-12 zlib1g_1:1.2.13.dfsg-1 zlib1g-dev_1:1.2.13.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.hOVYqYvz/trustedkeys.kbx': General error
gpgv: Signature made Wed Dec 21 07:07:01 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./r-bioc-degnorm_1.8.1+ds-1.dsc
dpkg-source: info: extracting r-bioc-degnorm in /<<BUILDDIR>>/r-bioc-degnorm-1.8.1+ds
dpkg-source: info: unpacking r-bioc-degnorm_1.8.1+ds.orig.tar.xz
dpkg-source: info: unpacking r-bioc-degnorm_1.8.1+ds-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-d15d3728-c46f-4672-9251-d67631cfcd7e
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-degnorm
dpkg-buildpackage: info: source version 1.8.1+ds-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-degnorm/ -a -O--buildsystem=R
I: R Package: DegNorm Version: 1.8.1
I: Building using R version 4.2.2.20221110-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Mon, 19 Dec 2022 16:44:06 +0100
mkdir -p /<<BUILDDIR>>/r-bioc-degnorm-1.8.1\+ds/debian/r-bioc-degnorm/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-degnorm-1.8.1\+ds/debian/r-bioc-degnorm/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 19 Dec 2022 16:44:06 +0100'"
* installing *source* package 'DegNorm' ...
** using staged installation
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-degnorm-1.8.1+ds/src'
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppArmadillo/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppArmadillo/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c degnormCPP.cpp -o degnormCPP.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o DegNorm.so RcppExports.o degnormCPP.o -fopenmp -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-degnorm-1.8.1+ds/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-degnorm-1.8.1+ds/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-degnorm-1.8.1+ds/src'
installing to /<<BUILDDIR>>/r-bioc-degnorm-1.8.1+ds/debian/r-bioc-degnorm/usr/lib/R/site-library/00LOCK-r-bioc-degnorm-1.8.1+ds/00new/DegNorm/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DegNorm)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 301.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 304.
W: Ignoring specified R dependency: R (>= 4.0.0)
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-cran-formatr for Suggests:formatR
I: Using r-cran-rcpp for Imports:Rcpp (>= 1.0.2)
I: Using r-bioc-genomicfeatures for Imports:GenomicFeatures
I: Using r-cran-foreach for Imports:foreach
I: Using r-bioc-s4vectors for Imports:S4Vectors
I: Using r-cran-doparallel for Imports:doParallel
I: Using r-bioc-rsamtools for Imports:Rsamtools (>= 1.31.2)
I: Using r-bioc-genomicalignments for Imports:GenomicAlignments
I: Using r-cran-heatmaply for Imports:heatmaply
I: Using r-cran-data.table for Imports:data.table
I: Using r-cran-ggplot2 for Imports:ggplot2
I: Using r-bioc-genomicranges for Imports:GenomicRanges
I: Using r-bioc-iranges for Imports:IRanges
I: Using r-cran-plyr for Imports:plyr
I: Using r-cran-plotly for Imports:plotly
I: Using r-cran-viridis for Imports:viridis
I: Using r-cran-rcpp for LinkingTo:Rcpp
I: Using r-cran-rcpparmadillo for LinkingTo:RcppArmadillo
I: Using r-bioc-s4vectors for LinkingTo:S4Vectors
I: Using r-bioc-iranges for LinkingTo:IRanges
I: BioConductor API version: r-api-bioc-3.16
I: Use r-bioc-degnorm as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-degnorm-dbgsym' in '../r-bioc-degnorm-dbgsym_1.8.1+ds-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-degnorm' in '../r-bioc-degnorm_1.8.1+ds-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-bioc-degnorm_1.8.1+ds-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../r-bioc-degnorm_1.8.1+ds-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
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Build finished at 2022-12-23T12:00:35Z
Finished
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I: Built successfully
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r-bioc-degnorm_1.8.1+ds-1_armhf.changes:
----------------------------------------
Format: 1.8
Date: Mon, 19 Dec 2022 16:44:06 +0100
Source: r-bioc-degnorm
Binary: r-bioc-degnorm r-bioc-degnorm-dbgsym
Architecture: armhf
Version: 1.8.1+ds-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-degnorm - DegNorm: degradation normalization for RNA-seq data
Changes:
r-bioc-degnorm (1.8.1+ds-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* Standards-Version: 4.6.2 (routine-update)
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Files:
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60847378eeacbf9795ad89021d9a94d2 15807 gnu-r optional r-bioc-degnorm_1.8.1+ds-1_armhf.buildinfo
50a6acca8292030cfa05f70e7f58c216 1509732 gnu-r optional r-bioc-degnorm_1.8.1+ds-1_armhf.deb
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r-bioc-degnorm-dbgsym_1.8.1+ds-1_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 912652 bytes: control archive=540 bytes.
398 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-degnorm-dbgsym
Source: r-bioc-degnorm
Version: 1.8.1+ds-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 930
Depends: r-bioc-degnorm (= 1.8.1+ds-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-degnorm
Build-Ids: da7c9e83e3b08ab4b85503c171c64b8755e0db60
drwxr-xr-x root/root 0 2022-12-19 15:44 ./
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/lib/
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/lib/debug/.build-id/da/
-rw-r--r-- root/root 941452 2022-12-19 15:44 ./usr/lib/debug/.build-id/da/7c9e83e3b08ab4b85503c171c64b8755e0db60.debug
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/share/
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-12-19 15:44 ./usr/share/doc/r-bioc-degnorm-dbgsym -> r-bioc-degnorm
r-bioc-degnorm_1.8.1+ds-1_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 1509732 bytes: control archive=1808 bytes.
985 bytes, 13 lines control
2904 bytes, 35 lines md5sums
Package: r-bioc-degnorm
Version: 1.8.1+ds-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 3139
Depends: r-base-core (>= 4.2.2.20221110-1), r-api-4.0, r-api-bioc-3.16, r-cran-rcpp (>= 1.0.2), r-bioc-genomicfeatures, r-cran-foreach, r-bioc-s4vectors, r-cran-doparallel, r-bioc-rsamtools (>= 1.31.2), r-bioc-genomicalignments, r-cran-heatmaply, r-cran-data.table, r-cran-ggplot2, r-bioc-genomicranges, r-bioc-iranges, r-cran-plyr, r-cran-plotly, r-cran-viridis, r-cran-rcpparmadillo, libblas3 | libblas.so.3, libc6 (>= 2.29), libgcc-s1 (>= 3.5), libgomp1 (>= 4.9), libstdc++6 (>= 5.2)
Suggests: r-cran-knitr, r-cran-rmarkdown, r-cran-formatr
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/DegNorm/
Description: DegNorm: degradation normalization for RNA-seq data
This package performs degradation normalization in bulk RNA-seq data to
improve differential expression analysis accuracy.
drwxr-xr-x root/root 0 2022-12-19 15:44 ./
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/lib/
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/lib/R/
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/
-rw-r--r-- root/root 1302 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/DESCRIPTION
-rw-r--r-- root/root 669 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/INDEX
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/Meta/
-rw-r--r-- root/root 674 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/Meta/Rd.rds
-rw-r--r-- root/root 144 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/Meta/data.rds
-rw-r--r-- root/root 131 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/Meta/features.rds
-rw-r--r-- root/root 652 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/Meta/hsearch.rds
-rw-r--r-- root/root 300 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/Meta/links.rds
-rw-r--r-- root/root 921 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/Meta/nsInfo.rds
-rw-r--r-- root/root 1396 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/Meta/package.rds
-rw-r--r-- root/root 193 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/Meta/vignette.rds
-rw-r--r-- root/root 1241 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/NAMESPACE
-rw-r--r-- root/root 1047 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/NEWS
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/R/
-rw-r--r-- root/root 1058 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/R/DegNorm
-rw-r--r-- root/root 35367 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/R/DegNorm.rdb
-rw-r--r-- root/root 579 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/R/DegNorm.rdx
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/data/
-rw-r--r-- root/root 394100 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/data/coverage_res_chr21.RData
-rw-r--r-- root/root 347880 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/data/res_DegNorm_chr21.RData
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/doc/
-rw-r--r-- root/root 3754 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/doc/DegNorm.R
-rw-r--r-- root/root 9224 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/doc/DegNorm.Rmd
-rw-r--r-- root/root 1374 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/doc/index.html
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/extdata/
-rw-r--r-- root/root 211184 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/extdata/SRR873822_chr21_9900000-10000000.bam
-rw-r--r-- root/root 176284 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/extdata/SRR873834_chr21_9900000-10000000.bam
-rw-r--r-- root/root 190304 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/extdata/SRR873838_chr21_9900000-10000000.bam
-rw-r--r-- root/root 1567188 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/extdata/genes_chr21.gtf
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/help/
-rw-r--r-- root/root 382 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/help/AnIndex
-rw-r--r-- root/root 19025 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/help/DegNorm.rdb
-rw-r--r-- root/root 419 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/help/DegNorm.rdx
-rw-r--r-- root/root 230 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/help/aliases.rds
-rw-r--r-- root/root 260 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/help/paths.rds
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/html/
-rw-r--r-- root/root 2666 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/html/00Index.html
-rw-r--r-- root/root 1735 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/html/R.css
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/libs/
-rw-r--r-- root/root 199208 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/libs/DegNorm.so
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/script/
-rw-r--r-- root/root 1561 2022-12-19 15:44 ./usr/lib/R/site-library/DegNorm/script/script.txt
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/share/
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-12-19 15:44 ./usr/share/doc/r-bioc-degnorm/
-rw-r--r-- root/root 502 2022-12-19 15:44 ./usr/share/doc/r-bioc-degnorm/changelog.Debian.gz
-rw-r--r-- root/root 1213 2022-12-19 15:44 ./usr/share/doc/r-bioc-degnorm/copyright
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Purging /<<BUILDDIR>>
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| Summary |
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Build Architecture: armhf
Build-Space: 9864
Build-Time: 742
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 2869
Job: r-bioc-degnorm_1.8.1+ds-1
Machine Architecture: armhf
Package: r-bioc-degnorm
Package-Time: 3665
Source-Version: 1.8.1+ds-1
Space: 9864
Status: successful
Version: 1.8.1+ds-1
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Finished at 2022-12-23T12:00:35Z
Build needed 01:01:05, 9864k disc space