qtltools →
1.3.1+dfsg-2 →
armhf → 2020-10-16 06:59:40
sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on test2019
+==============================================================================+
| qtltools 1.3.1+dfsg-2 (armhf) Fri, 16 Oct 2020 05:27:37 +0000 |
+==============================================================================+
Package: qtltools
Version: 1.3.1+dfsg-2
Source Version: 1.3.1+dfsg-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-fd7389f8-a0b1-4907-8559-ebbae1c3d157' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.7 MB]
Fetched 24.4 MB in 22s (1120 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'qtltools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/qtltools.git
Please use:
git clone https://salsa.debian.org/med-team/qtltools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 13.7 MB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main qtltools 1.3.1+dfsg-2 (dsc) [2190 B]
Get:2 http://172.17.0.1/private bullseye-staging/main qtltools 1.3.1+dfsg-2 (tar) [141 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main qtltools 1.3.1+dfsg-2 (diff) [13.6 MB]
Fetched 13.7 MB in 4s (3683 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/qtltools-UOhA5a/qtltools-1.3.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/qtltools-UOhA5a' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-WazdX0/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-WazdX0/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-WazdX0/gpg/trustdb.gpg: trustdb created
gpg: key E70254B6505CF8F7: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key E70254B6505CF8F7: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key E70254B6505CF8F7: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-WazdX0/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-WazdX0/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-WazdX0/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-WazdX0/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-WazdX0/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-WazdX0/apt_archive ./ Packages [434 B]
Fetched 2110 B in 1s (3225 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-WazdX0/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-WazdX0/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY E70254B6505CF8F7
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils libpam-cap sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 40 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-WazdX0/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (36.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13861 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libblas-dev, libboost-iostreams-dev, libboost-program-options-dev, libbz2-dev, libeigen3-dev, libgsl-dev, libhts-dev, r-mathlib, zlib1g-dev
Filtered Build-Depends: debhelper-compat (= 13), libblas-dev, libboost-iostreams-dev, libboost-program-options-dev, libbz2-dev, libeigen3-dev, libgsl-dev, libhts-dev, r-mathlib, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-qtltools-dummy' in '/<<BUILDDIR>>/resolver-WazdX0/apt_archive/sbuild-build-depends-qtltools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-qtltools-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-WazdX0/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-WazdX0/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-WazdX0/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-WazdX0/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-WazdX0/apt_archive ./ Sources [556 B]
Get:5 copy:/<<BUILDDIR>>/resolver-WazdX0/apt_archive ./ Packages [637 B]
Fetched 2526 B in 1s (3914 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-WazdX0/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-WazdX0/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY E70254B6505CF8F7
Reading package lists...
Install qtltools build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
libpam-cap
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev debhelper dh-autoreconf
dh-strip-nondeterminism dwz file gettext gettext-base groff-base
icu-devtools intltool-debian libarchive-zip-perl libblas-dev libblas3
libboost-iostreams-dev libboost-iostreams1.71-dev
libboost-program-options-dev libboost-program-options1.71-dev
libboost-program-options1.71.0 libboost-regex1.71-dev libboost-regex1.71.0
libboost1.71-dev libbrotli1 libbz2-dev libcroco3 libcurl3-gnutls
libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0
libeigen3-dev libelf1 libfile-stripnondeterminism-perl libglib2.0-0
libgsl-dev libgsl25 libgslcblas0 libgssapi-krb5-2 libhts-dev libhts3
libicu-dev libicu67 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5
librtmp1 libsigsegv2 libssh2-1 libssl1.1 libsub-override-perl libtool
libuchardet0 libxml2 m4 man-db pkg-config po-debconf r-mathlib zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff liblapack-doc libboost1.71-doc
libboost-atomic1.71-dev libboost-chrono1.71-dev libboost-container1.71-dev
libboost-context1.71-dev libboost-contract1.71-dev
libboost-coroutine1.71-dev libboost-date-time1.71-dev
libboost-exception1.71-dev libboost-fiber1.71-dev
libboost-filesystem1.71-dev libboost-graph1.71-dev
libboost-graph-parallel1.71-dev libboost-locale1.71-dev libboost-log1.71-dev
libboost-math1.71-dev libboost-mpi1.71-dev libboost-mpi-python1.71-dev
libboost-numpy1.71-dev libboost-python1.71-dev libboost-random1.71-dev
libboost-serialization1.71-dev libboost-stacktrace1.71-dev
libboost-system1.71-dev libboost-test1.71-dev libboost-thread1.71-dev
libboost-timer1.71-dev libboost-type-erasure1.71-dev libboost-wave1.71-dev
libboost1.71-tools-dev libmpfrc++-dev libntl-dev libcurl4-doc
libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev
libssh2-1-dev libeigen3-doc gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info
| gsl-ref-html krb5-doc krb5-user icu-doc liblzma-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx bzip2-doc ca-certificates libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix
libltdl-dev libmail-sendmail-perl r-base-core r-base-dev
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev debhelper dh-autoreconf
dh-strip-nondeterminism dwz file gettext gettext-base groff-base
icu-devtools intltool-debian libarchive-zip-perl libblas-dev libblas3
libboost-iostreams-dev libboost-iostreams1.71-dev
libboost-program-options-dev libboost-program-options1.71-dev
libboost-program-options1.71.0 libboost-regex1.71-dev libboost-regex1.71.0
libboost1.71-dev libbrotli1 libbz2-dev libcroco3 libcurl3-gnutls
libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0
libeigen3-dev libelf1 libfile-stripnondeterminism-perl libglib2.0-0
libgsl-dev libgsl25 libgslcblas0 libgssapi-krb5-2 libhts-dev libhts3
libicu-dev libicu67 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5
librtmp1 libsigsegv2 libssh2-1 libssl1.1 libsub-override-perl libtool
libuchardet0 libxml2 m4 man-db pkg-config po-debconf r-mathlib
sbuild-build-depends-qtltools-dummy zlib1g-dev
0 upgraded, 70 newly installed, 0 to remove and 40 not upgraded.
Need to get 51.1 MB/52.4 MB of archives.
After this operation, 301 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-WazdX0/apt_archive ./ sbuild-build-depends-qtltools-dummy 0.invalid.0 [916 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2.1 [188 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.181-1 [161 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.1-1 [1174 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-4 [8289 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6 [578 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2.1 [1007 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 67.1-4 [172 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libblas-dev armhf 3.9.0-3 [113 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libboost1.71-dev armhf 1.71.0-6+b1 [9099 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libboost-regex1.71.0 armhf 1.71.0-6+b1 [435 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 67.1-4 [9248 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libboost-regex1.71-dev armhf 1.71.0-6+b1 [571 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libboost-iostreams1.71-dev armhf 1.71.0-6+b1 [271 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libboost-iostreams-dev armhf 1.71.0.3+b3 [4388 B]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options1.71.0 armhf 1.71.0-6+b1 [341 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options1.71-dev armhf 1.71.0-6+b1 [396 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options-dev armhf 1.71.0.3+b3 [4412 B]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2 [259 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libbz2-dev armhf 1.0.8-4 [28.0 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-10+b3 [62.0 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-10+b3 [112 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-10+b3 [318 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-10+b3 [135 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.41.0-3 [63.0 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.72.0-1 [297 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libcurl4-gnutls-dev armhf 7.72.0-1 [371 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.6-1 [47.4 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libdeflate-dev armhf 1.6-1 [40.8 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libeigen3-dev all 3.3.8-3 [857 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libgslcblas0 armhf 2.6+dfsg-2 [79.5 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libgsl25 armhf 2.6+dfsg-2 [753 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libgsl-dev armhf 2.6+dfsg-2 [950 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libhts3 armhf 1.11-2 [318 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libhts-dev armhf 1.11-2 [4495 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf r-mathlib armhf 4.0.3-1 [2036 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Processing triggers for libc-bin (2.31-3+rpi1) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ armhf (armv7l)
Toolchain package versions: binutils_2.35-2+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-5+rpi1 gcc-10_10.2.0-5+rpi1 libc6-dev_2.31-3+rpi1 libstdc++-10-dev_10.2.0-5+rpi1 libstdc++6_10.2.0-5+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.10 aptitude_0.8.13-2 aptitude-common_0.8.13-2 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-7 binutils_2.35-2+rpi1 binutils-arm-linux-gnueabihf_2.35-2+rpi1 binutils-common_2.35-2+rpi1 bsdextrautils_2.36-3 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.30-3 cpp_4:10.1.0-1+rpi1 cpp-10_10.2.0-5+rpi1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.36-3 file_1:5.38-5 findutils_4.7.0-1 g++_4:10.1.0-1+rpi1 g++-10_10.2.0-5+rpi1 gcc_4:10.1.0-1+rpi1 gcc-10_10.2.0-5+rpi1 gcc-10-base_10.2.0-5+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 icu-devtools_67.1-4 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20200821-2 libacl1_2.2.53-8 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libasan6_10.2.0-5+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-5+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.35-2+rpi1 libblas-dev_3.9.0-3 libblas3_3.9.0-3 libblkid1_2.36-3 libboost-iostreams-dev_1.71.0.3+b3 libboost-iostreams1.71-dev_1.71.0-6+b1 libboost-iostreams1.71.0_1.71.0-6+b1 libboost-program-options-dev_1.71.0.3+b3 libboost-program-options1.71-dev_1.71.0-6+b1 libboost-program-options1.71.0_1.71.0-6+b1 libboost-regex1.71-dev_1.71.0-6+b1 libboost-regex1.71.0_1.71.0-6+b1 libboost1.71-dev_1.71.0-6+b1 libbrotli1_1.0.9-2 libbz2-1.0_1.0.8-4 libbz2-dev_1.0.8-4 libc-bin_2.31-3+rpi1 libc-dev-bin_2.31-3+rpi1 libc6_2.31-3+rpi1 libc6-dev_2.31-3+rpi1 libcap-ng0_0.7.9-2.2 libcap2_1:2.43-1 libcap2-bin_1:2.43-1 libcc1-0_10.2.0-5+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35-2+rpi1 libctf0_2.35-2+rpi1 libcurl3-gnutls_7.72.0-1 libcurl4-gnutls-dev_7.72.0-1 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.253 libdebhelper-perl_13.2.1 libdeflate-dev_1.6-1 libdeflate0_1.6-1 libdpkg-perl_1.20.5+rpi1 libeigen3-dev_3.3.8-3 libelf1_0.181-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.36-3 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-5+rpi1 libgcc-s1_10.2.0-5+rpi1 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.1-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.14-2+b1 libgomp1_10.2.0-5+rpi1 libgpg-error0_1.38-2 libgsl-dev_2.6+dfsg-2 libgsl25_2.6+dfsg-2 libgslcblas0_2.6+dfsg-2 libgssapi-krb5-2_1.17-10+b3 libhogweed6_3.6-2 libhts-dev_1.11-2 libhts3_1.11-2 libicu-dev_67.1-4 libicu67_67.1-4 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libk5crypto3_1.17-10+b3 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10+b3 libkrb5support0_1.17-10+b3 libksba8_1.4.0-2 libldap-2.4-2_2.4.51+dfsg-1 libldap-common_2.4.51+dfsg-1 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3 libmpc3_1.2.0~rc1-1 libmpfr6_4.1.0-3 libncursesw6_6.2-1 libnettle8_3.6-2 libnghttp2-14_1.41.0-3 libnpth0_1.6-2 libp11-kit0_0.23.21-2 libpam-cap_1:2.43-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libpsl5_0.21.0-1.1 libreadline8_8.0-4 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.2-1 libsigsegv2_2.12-2 libsmartcols1_2.36-3 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1g-1 libstdc++-10-dev_10.2.0-5+rpi1 libstdc++6_10.2.0-5+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.2-1+rpi1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.2.0-5+rpi1 libuchardet0_0.0.7-1 libudev1_246.2-1+rpi1 libunistring2_0.9.10-4 libuuid1_2.36-3 libxapian30_1.4.17-1 libxml2_2.9.10+dfsg-6 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3 ncurses-base_6.2-1 ncurses-bin_6.2-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21 r-mathlib_4.0.3-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-qtltools-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-4 tar_1.30+dfsg-7 tzdata_2020a-1 util-linux_2.36-3 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.A4JOxmy7/trustedkeys.kbx': General error
gpgv: Signature made Tue Oct 13 15:57:06 2020 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./qtltools_1.3.1+dfsg-2.dsc
dpkg-source: info: extracting qtltools in /<<BUILDDIR>>/qtltools-1.3.1+dfsg
dpkg-source: info: unpacking qtltools_1.3.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking qtltools_1.3.1+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying Makefile_config.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/build/buildd
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=116
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-fd7389f8-a0b1-4907-8559-ebbae1c3d157
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_ID=c216529
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package qtltools
dpkg-buildpackage: info: source version 1.3.1+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/qtltools-1.3.1+dfsg'
rm -f debian/upstream.example/examples.tar.xz
dh_auto_clean
make -j4 clean
make[2]: Entering directory '/<<BUILDDIR>>/qtltools-1.3.1+dfsg'
rm -f obj/*.o bin/QTLtools
make[2]: Leaving directory '/<<BUILDDIR>>/qtltools-1.3.1+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/qtltools-1.3.1+dfsg'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/qtltools-1.3.1+dfsg'
mkdir -p /<<BUILDDIR>>/qtltools-1.3.1+dfsg/obj/
mkdir -p /<<BUILDDIR>>/qtltools-1.3.1+dfsg/bin/
dh_auto_build
make -j4 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<BUILDDIR>>/qtltools-1.3.1+dfsg'
g++ -std=c++0x -o obj/QTLtools.o -c src/QTLtools.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/data.o -c src/common/data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/ase_main.o -c src/mode_ase/ase_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/ase_management.o -c src/mode_ase/ase_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/ase_read_blacklist.o -c src/mode_ase/ase_read_blacklist.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/ase_read_fasta.o -c src/mode_ase/ase_read_fasta.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/ase_read_genotypes.o -c src/mode_ase/ase_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/ase_read_gtf.o -c src/mode_ase/ase_read_gtf.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/ase_read_sequences.o -c src/mode_ase/ase_read_sequences.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/ase_run_analyses.o -c src/mode_ase/ase_run_analyses.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/bamstat_main.o -c src/mode_bamstat/bamstat_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/bamstat_read_annotations.o -c src/mode_bamstat/bamstat_read_annotations.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from /usr/include/c++/10/vector:72,
from lib/OTools/otools.h:20,
from src/mode_ase/../common/data.h:19,
from src/mode_ase/ase_data.h:20,
from src/mode_ase/ase_read_sequences.cpp:16:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ase_site&}; _Tp = ase_site; _Alloc = std::allocator<ase_site>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ase_site>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from lib/OTools/otools.h:20,
from src/mode_ase/../common/data.h:19,
from src/mode_ase/ase_data.h:20,
from src/mode_ase/ase_read_sequences.cpp:16:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void ase_data::parseBam(void*)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ase_site*, std::vector<ase_site> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/set:60,
from lib/OTools/otools.h:25,
from src/mode_ase/../common/data.h:19,
from src/mode_ase/ase_data.h:20,
from src/mode_ase/ase_run_analyses.cpp:16:
/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from lib/OTools/otools.h:26,
from src/mode_ase/../common/data.h:19,
from src/mode_ase/ase_data.h:20,
from src/mode_ase/ase_run_analyses.cpp:16:
/usr/include/c++/10/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/set:60,
from lib/OTools/otools.h:25,
from src/mode_ase/../common/data.h:19,
from src/mode_ase/ase_data.h:20,
from src/mode_ase/ase_run_analyses.cpp:16:
/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, bias_stats>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, bias_stats> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, bias_stats> >]':
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, bias_stats>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, bias_stats> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, bias_stats> > >::const_iterator' changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=c++0x -o obj/bamstat_read_bam.o -c src/mode_bamstat/bamstat_read_bam.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from /usr/include/c++/10/map:61,
from lib/OTools/otools.h:26,
from src/mode_ase/../common/data.h:19,
from src/mode_ase/ase_data.h:20,
from src/mode_ase/ase_run_analyses.cpp:16:
/usr/include/c++/10/bits/stl_map.h: In member function 'void ase_data::calculateASE(std::string, std::string)':
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h: In member function 'void ase_data::calculateRefToAltBias(std::string, std::string)':
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, bias_stats>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, bias_stats> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, bias_stats> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, bias_stats>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, bias_stats> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, bias_stats> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
g++ -std=c++0x -o obj/bamstat_write_output.o -c src/mode_bamstat/bamstat_write_output.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/cis_chunking.o -c src/mode_cis/cis_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/cis_collapse_phenotypes.o -c src/mode_cis/cis_collapse_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/cis_conditionnal_pass.o -c src/mode_cis/cis_conditionnal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/cis_initilization.o -c src/mode_cis/cis_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/cis_learn_beta.o -c src/mode_cis/cis_learn_beta.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from /usr/include/c++/10/vector:72,
from lib/OTools/otools.h:20,
from src/mode_cis/../common/data.h:19,
from src/mode_cis/cis_data.h:33,
from src/mode_cis/cis_collapse_phenotypes.cpp:16:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void cis_data::collapsePhenotypes()':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=c++0x -o obj/cis_learn_dof.o -c src/mode_cis/cis_learn_dof.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from /usr/include/c++/10/vector:72,
from lib/OTools/otools.h:20,
from src/mode_cis/../common/data.h:19,
from src/mode_cis/cis_data.h:33,
from src/mode_cis/cis_conditionnal_pass.cpp:16:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -std=c++0x -o obj/cis_main.o -c src/mode_cis/cis_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
/usr/include/c++/10/bits/vector.tcc: In member function 'void cis_data::runConditionalPass(std::string)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=c++0x -o obj/cis_management.o -c src/mode_cis/cis_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/cis_nominal_pass.o -c src/mode_cis/cis_nominal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/cis_permutation_pass.o -c src/mode_cis/cis_permutation_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/cis_read_covariates.o -c src/mode_cis/cis_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/cis_read_genotypes.o -c src/mode_cis/cis_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/cis_read_phenotypes.o -c src/mode_cis/cis_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/cis_read_thresholds.o -c src/mode_cis/cis_read_thresholds.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/correct_main.o -c src/mode_correct/correct_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/correct_management.o -c src/mode_correct/correct_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/correct_processing.o -c src/mode_correct/correct_processing.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/correct_read_covariates.o -c src/mode_correct/correct_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/extract_main.o -c src/mode_extract/extract_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
src/mode_correct/correct_processing.cpp: In member function 'void correct_data::processVCF(std::string, std::string)':
src/mode_correct/correct_processing.cpp:127:15: warning: ignoring return value of 'int bcf_hdr_write(htsFile*, bcf_hdr_t*)' declared with attribute 'warn_unused_result' [-Wunused-result]
127 | bcf_hdr_write(fp, hdr_new);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~
g++ -std=c++0x -o obj/extract_managment.o -c src/mode_extract/extract_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/extract_read_data.o -c src/mode_extract/extract_read_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/extract_write.o -c src/mode_extract/extract_write.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/fdensity_main.o -c src/mode_fdensity/fdensity_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/fdensity_process.o -c src/mode_fdensity/fdensity_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/fdensity_read_annotation.o -c src/mode_fdensity/fdensity_read_annotation.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/fdensity_read_qtl.o -c src/mode_fdensity/fdensity_read_qtl.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/fenrich_main.o -c src/mode_fenrich/fenrich_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/fenrich_management.o -c src/mode_fenrich/fenrich_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/fenrich_process.o -c src/mode_fenrich/fenrich_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/fenrich_read_annotation.o -c src/mode_fenrich/fenrich_read_annotation.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/fenrich_read_qtl.o -c src/mode_fenrich/fenrich_read_qtl.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/fenrich_read_tss.o -c src/mode_fenrich/fenrich_read_tss.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/genrich_binning_process.o -c src/mode_genrich/genrich_binning_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/genrich_main.o -c src/mode_genrich/genrich_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/genrich_process.o -c src/mode_genrich/genrich_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/genrich_read_auxillliary_data.o -c src/mode_genrich/genrich_read_auxillliary_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/genrich_read_phenotypes.o -c src/mode_genrich/genrich_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/genrich_read_reference_genotypes.o -c src/mode_genrich/genrich_read_reference_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/genrich_routines.o -c src/mode_genrich/genrich_routines.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/gwas_analysis_pass.o -c src/mode_gwas/gwas_analysis_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/gwas_initilization.o -c src/mode_gwas/gwas_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/gwas_main.o -c src/mode_gwas/gwas_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/gwas_managment.o -c src/mode_gwas/gwas_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
src/mode_gwas/gwas_analysis_pass.cpp: In member function 'void gwas_data::runGwasPassOnVCF(std::string, std::string)':
src/mode_gwas/gwas_analysis_pass.cpp:28:21: warning: ignoring return value of 'int bcf_hdr_set_samples(bcf_hdr_t*, const char*, int)' declared with attribute 'warn_unused_result' [-Wunused-result]
28 | bcf_hdr_set_samples(hdr, concat_id.c_str(), 0);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=c++0x -o obj/gwas_read_covariates.o -c src/mode_gwas/gwas_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/gwas_read_phenotypes.o -c src/mode_gwas/gwas_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/match_main.o -c src/mode_match/match_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/match_managment.o -c src/mode_match/match_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/match_process.o -c src/mode_match/match_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/match_read_genotypes.o -c src/mode_match/match_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/match_read_sequences.o -c src/mode_match/match_read_sequences.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/pca_main.o -c src/mode_pca/pca_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/pca_management.o -c src/mode_pca/pca_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/pca_pca.o -c src/mode_pca/pca_pca.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/pca_read_data.o -c src/mode_pca/pca_read_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/quan_main.o -c src/mode_quan/quan_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/quan_readBAM.o -c src/mode_quan/quan_readBAM.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/quan_readGTF.o -c src/mode_quan/quan_readGTF.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/quan_writeResults.o -c src/mode_quan/quan_writeResults.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from /usr/include/c++/10/vector:72,
from lib/OTools/otools.h:20,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_readBAM.cpp:16:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const my_gene&}; _Tp = my_gene; _Alloc = std::allocator<my_gene>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<my_gene>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from lib/OTools/otools.h:20,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_readBAM.cpp:16:
/usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector<my_gene> quan2_data::getOverlappingGenesQ(my_block&)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from lib/OTools/otools.h:20,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_readBAM.cpp:16:
/usr/include/c++/10/bits/vector.tcc: In member function 'void quan2_data::readBam(std::string)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=c++0x -o obj/quan_xxhash.o -c src/mode_quan/quan_xxhash.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rep_initilization.o -c src/mode_rep/rep_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from /usr/include/c++/10/queue:62,
from lib/OTools/otools.h:22,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_readGTF.cpp:16:
/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >; _Distance = int; _Tp = my_exon; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >' changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_heap.h:253:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >' changed in GCC 7.1
253 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~
/usr/include/c++/10/bits/stl_heap.h:253:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_heap.h:253:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >' changed in GCC 7.1
339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >' changed in GCC 7.1
In file included from /usr/include/c++/10/algorithm:62,
from lib/OTools/otools.h:29,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_readGTF.cpp:16:
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >' changed in GCC 7.1
1819 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >' changed in GCC 7.1
In file included from /usr/include/c++/10/vector:72,
from lib/OTools/otools.h:20,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_readGTF.cpp:16:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const my_exon&}; _Tp = my_exon; _Alloc = std::allocator<my_exon>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<my_exon>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from lib/OTools/otools.h:29,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_readGTF.cpp:16:
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >' changed in GCC 7.1
1945 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >' changed in GCC 7.1
In file included from /usr/include/c++/10/queue:62,
from lib/OTools/otools.h:22,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_readGTF.cpp:16:
/usr/include/c++/10/bits/stl_heap.h:424:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >' changed in GCC 7.1
424 | std::__pop_heap(__first, __last, __last, __comp);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from lib/OTools/otools.h:29,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_readGTF.cpp:16:
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >' changed in GCC 7.1
1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1666:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >' changed in GCC 7.1
1666 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In member function 'void my_gene::assign(my_exon&)':
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >' changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >' changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >' changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from lib/OTools/otools.h:20,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_readGTF.cpp:16:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_exon*, std::vector<my_exon> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:66,
from lib/OTools/otools.h:20,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_readGTF.cpp:16:
/usr/include/c++/10/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const my_exon*, std::vector<my_exon> >; _ForwardIterator = my_exon*; bool _TrivialValueTypes = false]':
/usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const my_exon*, std::vector<my_exon> >' changed in GCC 7.1
84 | __uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const my_exon*, std::vector<my_exon> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor 'my_gene::my_gene(const my_gene&)':
/usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const my_exon*, std::vector<my_exon> >' changed in GCC 7.1
147 | return std::__uninitialized_copy<__is_trivial(_ValueType1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
148 | && __is_trivial(_ValueType2)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
149 | && __assignable>::
| ~~~~~~~~~~~~~~~~~~
150 | __uninit_copy(__first, __last, __result);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from lib/OTools/otools.h:20,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_readGTF.cpp:16:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {my_gene}; _Tp = my_gene; _Alloc = std::allocator<my_gene>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<my_gene>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:66,
from lib/OTools/otools.h:20,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_readGTF.cpp:16:
/usr/include/c++/10/bits/stl_uninitialized.h: In function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = my_exon; _Alloc = std::allocator<my_exon>]':
/usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const my_exon*, std::vector<my_exon> >' changed in GCC 7.1
147 | return std::__uninitialized_copy<__is_trivial(_ValueType1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
148 | && __is_trivial(_ValueType2)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
149 | && __assignable>::
| ~~~~~~~~~~~~~~~~~~
150 | __uninit_copy(__first, __last, __result);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from lib/OTools/otools.h:29,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_readGTF.cpp:16:
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >' changed in GCC 7.1
1819 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >' changed in GCC 7.1
In file included from /usr/include/c++/10/queue:62,
from lib/OTools/otools.h:22,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_readGTF.cpp:16:
/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >; _Distance = int; _Tp = my_gene; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >' changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_heap.h:253:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >' changed in GCC 7.1
253 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~
/usr/include/c++/10/bits/stl_heap.h:253:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_heap.h:253:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_heap.h:253:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >' changed in GCC 7.1
339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >' changed in GCC 7.1
In file included from /usr/include/c++/10/algorithm:62,
from lib/OTools/otools.h:29,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_readGTF.cpp:16:
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >' changed in GCC 7.1
1945 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >' changed in GCC 7.1
In file included from /usr/include/c++/10/queue:62,
from lib/OTools/otools.h:22,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_readGTF.cpp:16:
/usr/include/c++/10/bits/stl_heap.h:424:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >' changed in GCC 7.1
424 | std::__pop_heap(__first, __last, __last, __comp);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from lib/OTools/otools.h:29,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_readGTF.cpp:16:
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >' changed in GCC 7.1
1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1666:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >' changed in GCC 7.1
1666 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from lib/OTools/otools.h:20,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_readGTF.cpp:16:
/usr/include/c++/10/bits/vector.tcc: In member function 'void quan2_data::readGTF(std::string)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from lib/OTools/otools.h:29,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_readGTF.cpp:16:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >' changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >' changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<my_gene*, std::vector<my_gene> >' changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=c++0x -o obj/rep_main.o -c src/mode_rep/rep_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rep_management.o -c src/mode_rep/rep_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rep_nominal_pass.o -c src/mode_rep/rep_nominal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rep_read_covariates.o -c src/mode_rep/rep_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rep_read_genotypes.o -c src/mode_rep/rep_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rep_read_phenotypes.o -c src/mode_rep/rep_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rep_read_qtls.o -c src/mode_rep/rep_read_qtls.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rtc_chunking.o -c src/mode_rtc/rtc_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rtc_collapse_phenotypes.o -c src/mode_rtc/rtc_collapse_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rtc_common.o -c src/mode_rtc/rtc_common.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rtc_gwas_cis.o -c src/mode_rtc/rtc_gwas_cis.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rtc_gwas_trans.o -c src/mode_rtc/rtc_gwas_trans.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from /usr/include/c++/10/vector:72,
from lib/OTools/otools.h:20,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_collapse_phenotypes.cpp:16:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/queue:62,
from lib/OTools/otools.h:22,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_common.cpp:16:
/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from lib/OTools/otools.h:29,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_common.cpp:16:
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1945 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from lib/OTools/otools.h:20,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_common.cpp:16:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const pairsToTestForRTC&}; _Tp = pairsToTestForRTC; _Alloc = std::allocator<pairsToTestForRTC>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<pairsToTestForRTC>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void rtc_data::collapsePhenotypes()':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=c++0x -o obj/rtc_initilization.o -c src/mode_rtc/rtc_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from /usr/include/c++/10/vector:67,
from lib/OTools/otools.h:20,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_common.cpp:16:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void rtc_data::calculateRTC(std::string)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<pairsToTestForRTC*, std::vector<pairsToTestForRTC> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from lib/OTools/otools.h:29,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_common.cpp:16:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=c++0x -o obj/rtc_main.o -c src/mode_rtc/rtc_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from /usr/include/c++/10/vector:72,
from lib/OTools/otools.h:20,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_gwas_cis.cpp:16:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {pairsToTestForRTC}; _Tp = pairsToTestForRTC; _Alloc = std::allocator<pairsToTestForRTC>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<pairsToTestForRTC>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void rtc_data::gwas_cis(std::string, std::string)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<pairsToTestForRTC*, std::vector<pairsToTestForRTC> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void rtc_data::gwas_cis_conditional(std::string, std::string)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<pairsToTestForRTC*, std::vector<pairsToTestForRTC> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=c++0x -o obj/rtc_management.o -c src/mode_rtc/rtc_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from /usr/include/c++/10/vector:72,
from lib/OTools/otools.h:20,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_gwas_trans.cpp:16:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {pairsToTestForRTC}; _Tp = pairsToTestForRTC; _Alloc = std::allocator<pairsToTestForRTC>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<pairsToTestForRTC>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void rtc_data::gwas_trans(std::string, std::string)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<pairsToTestForRTC*, std::vector<pairsToTestForRTC> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void rtc_data::gwas_trans_conditional(std::string, std::string)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<pairsToTestForRTC*, std::vector<pairsToTestForRTC> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=c++0x -o obj/rtc_mergeQTL_cis.o -c src/mode_rtc/rtc_mergeQTL_cis.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rtc_mergeQTL_trans.o -c src/mode_rtc/rtc_mergeQTL_trans.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rtc_read_covariates.o -c src/mode_rtc/rtc_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rtc_read_genotypes.o -c src/mode_rtc/rtc_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from /usr/include/c++/10/vector:72,
from lib/OTools/otools.h:20,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_mergeQTL_cis.cpp:16:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {pairsToTestForRTC}; _Tp = pairsToTestForRTC; _Alloc = std::allocator<pairsToTestForRTC>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<pairsToTestForRTC>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void rtc_data::mergeqtl_cis(std::string, std::string)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<pairsToTestForRTC*, std::vector<pairsToTestForRTC> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void rtc_data::mergeqtl_cis_conditional(std::string, std::string)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<pairsToTestForRTC*, std::vector<pairsToTestForRTC> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=c++0x -o obj/rtc_read_get_hotspots.o -c src/mode_rtc/rtc_read_get_hotspots.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from /usr/include/c++/10/vector:72,
from lib/OTools/otools.h:20,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_mergeQTL_trans.cpp:16:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {pairsToTestForRTC}; _Tp = pairsToTestForRTC; _Alloc = std::allocator<pairsToTestForRTC>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<pairsToTestForRTC>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void rtc_data::mergeqtl_trans(std::string, std::string)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<pairsToTestForRTC*, std::vector<pairsToTestForRTC> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void rtc_data::mergeqtl_trans_conditional(std::string, std::string)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<pairsToTestForRTC*, std::vector<pairsToTestForRTC> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=c++0x -o obj/rtc_read_phenotypes.o -c src/mode_rtc/rtc_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rtc_sampling.o -c src/mode_rtc/rtc_sampling.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/trans_adjust.o -c src/mode_trans/trans_adjust.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/trans_analysis_pass.o -c src/mode_trans/trans_analysis_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/trans_chunking.o -c src/mode_trans/trans_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from /usr/include/c++/10/queue:62,
from lib/OTools/otools.h:22,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_sampling.cpp:16:
/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from lib/OTools/otools.h:29,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_sampling.cpp:16:
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1945 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/set:60,
from lib/OTools/otools.h:25,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_sampling.cpp:16:
/usr/include/c++/10/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from lib/OTools/otools.h:29,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_sampling.cpp:16:
/usr/include/c++/10/bits/stl_algo.h: In member function 'rtc_sample_results rtc_data::sampleRTC(std::vector<int>&, std::vector<float>&, int, double, int)':
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=c++0x -o obj/trans_initilization.o -c src/mode_trans/trans_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from /usr/include/c++/10/vector:72,
from lib/OTools/otools.h:20,
from src/mode_trans/../common/data.h:19,
from src/mode_trans/trans_data.h:26,
from src/mode_trans/trans_adjust.cpp:16:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void trans_data::buildNullDistribution(std::string)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=c++0x -o obj/trans_learn_beta.o -c src/mode_trans/trans_learn_beta.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/trans_main.o -c src/mode_trans/trans_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/trans_managment.o -c src/mode_trans/trans_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/trans_read_covariates.o -c src/mode_trans/trans_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/trans_read_phenotypes.o -c src/mode_trans/trans_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/trans_read_samples.o -c src/mode_trans/trans_read_samples.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/union_initilization.o -c src/mode_union/union_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/union_main.o -c src/mode_union/union_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/union_management.o -c src/mode_union/union_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/union_read_covariates.o -c src/mode_union/union_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/union_read_genotypes.o -c src/mode_union/union_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/union_read_get_hotspots.o -c src/mode_union/union_read_get_hotspots.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/union_read_phenotypes.o -c src/mode_union/union_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/union_union.o -c src/mode_union/union_union.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from /usr/include/c++/10/vector:72,
from lib/OTools/otools.h:20,
from src/mode_union/../common/data.h:19,
from src/mode_union/union_data.h:20,
from src/mode_union/union_union.cpp:16:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from lib/OTools/otools.h:20,
from src/mode_union/../common/data.h:19,
from src/mode_union/union_data.h:20,
from src/mode_union/union_union.cpp:16:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void union_data::find_unions(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -std=c++0x obj/QTLtools.o obj/data.o obj/ase_main.o obj/ase_management.o obj/ase_read_blacklist.o obj/ase_read_fasta.o obj/ase_read_genotypes.o obj/ase_read_gtf.o obj/ase_read_sequences.o obj/ase_run_analyses.o obj/bamstat_main.o obj/bamstat_read_annotations.o obj/bamstat_read_bam.o obj/bamstat_write_output.o obj/cis_chunking.o obj/cis_collapse_phenotypes.o obj/cis_conditionnal_pass.o obj/cis_initilization.o obj/cis_learn_beta.o obj/cis_learn_dof.o obj/cis_main.o obj/cis_management.o obj/cis_nominal_pass.o obj/cis_permutation_pass.o obj/cis_read_covariates.o obj/cis_read_genotypes.o obj/cis_read_phenotypes.o obj/cis_read_thresholds.o obj/correct_main.o obj/correct_management.o obj/correct_processing.o obj/correct_read_covariates.o obj/extract_main.o obj/extract_managment.o obj/extract_read_data.o obj/extract_write.o obj/fdensity_main.o obj/fdensity_process.o obj/fdensity_read_annotation.o obj/fdensity_read_qtl.o obj/fenrich_main.o obj/fenrich_management.o obj/fenrich_process.o obj/fenrich_read_annotation.o obj/fenrich_read_qtl.o obj/fenrich_read_tss.o obj/genrich_binning_process.o obj/genrich_main.o obj/genrich_process.o obj/genrich_read_auxillliary_data.o obj/genrich_read_phenotypes.o obj/genrich_read_reference_genotypes.o obj/genrich_routines.o obj/gwas_analysis_pass.o obj/gwas_initilization.o obj/gwas_main.o obj/gwas_managment.o obj/gwas_read_covariates.o obj/gwas_read_phenotypes.o obj/match_main.o obj/match_managment.o obj/match_process.o obj/match_read_genotypes.o obj/match_read_sequences.o obj/pca_main.o obj/pca_management.o obj/pca_pca.o obj/pca_read_data.o obj/quan_main.o obj/quan_readBAM.o obj/quan_readGTF.o obj/quan_writeResults.o obj/quan_xxhash.o obj/rep_initilization.o obj/rep_main.o obj/rep_management.o obj/rep_nominal_pass.o obj/rep_read_covariates.o obj/rep_read_genotypes.o obj/rep_read_phenotypes.o obj/rep_read_qtls.o obj/rtc_chunking.o obj/rtc_collapse_phenotypes.o obj/rtc_common.o obj/rtc_gwas_cis.o obj/rtc_gwas_trans.o obj/rtc_initilization.o obj/rtc_main.o obj/rtc_management.o obj/rtc_mergeQTL_cis.o obj/rtc_mergeQTL_trans.o obj/rtc_read_covariates.o obj/rtc_read_genotypes.o obj/rtc_read_get_hotspots.o obj/rtc_read_phenotypes.o obj/rtc_sampling.o obj/trans_adjust.o obj/trans_analysis_pass.o obj/trans_chunking.o obj/trans_initilization.o obj/trans_learn_beta.o obj/trans_main.o obj/trans_managment.o obj/trans_read_covariates.o obj/trans_read_phenotypes.o obj/trans_read_samples.o obj/union_initilization.o obj/union_main.o obj/union_management.o obj/union_read_covariates.o obj/union_read_genotypes.o obj/union_read_get_hotspots.o obj/union_read_phenotypes.o obj/union_union.o -lRmath -lhts -lboost_iostreams -lboost_program_options -o bin/QTLtools -lz -lgsl -lblas -lbz2 -lm -lpthread -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/<<BUILDDIR>>/qtltools-1.3.1+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/qtltools-1.3.1+dfsg'
dh_auto_test -a
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dh_testroot -a
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make -j4 install DESTDIR=/<<BUILDDIR>>/qtltools-1.3.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<BUILDDIR>>/qtltools-1.3.1+dfsg'
mkdir -p -m 755 /<<BUILDDIR>>/qtltools-1.3.1+dfsg/debian/tmp/usr/local/bin /<<BUILDDIR>>/qtltools-1.3.1+dfsg/debian/tmp/usr/local/share/man/man1 /<<BUILDDIR>>/qtltools-1.3.1+dfsg/debian/tmp/etc/bash_completion.d
install --strip-program=true bin/QTLtools /<<BUILDDIR>>/qtltools-1.3.1+dfsg/debian/tmp/usr/local/bin
install: WARNING: ignoring --strip-program option as -s option was not specified
install --strip-program=true -m 755 scripts/qtltools_runFDR_cis.R scripts/qtltools_runFDR_ftrans.R scripts/qtltools_plotTrans.R scripts/qtltools_runFDR_atrans.R /<<BUILDDIR>>/qtltools-1.3.1+dfsg/debian/tmp/usr/local/bin
install: WARNING: ignoring --strip-program option as -s option was not specified
install --strip-program=true -m 644 doc/QTLtools-ase.1 doc/QTLtools-rtc-union.1 doc/QTLtools-correct.1 doc/QTLtools.1 doc/QTLtools-extract.1 doc/QTLtools-fenrich.1 doc/QTLtools-rep.1 doc/QTLtools-mbv.1 doc/QTLtools-trans.1 doc/QTLtools-rtc.1 doc/QTLtools-fdensity.1 doc/QTLtools-quan.1 doc/QTLtools-cis.1 doc/QTLtools-pca.1 doc/QTLtools-bamstat.1 doc/QTLtools-gwas.1 /<<BUILDDIR>>/qtltools-1.3.1+dfsg/debian/tmp/usr/local/share/man/man1
install: WARNING: ignoring --strip-program option as -s option was not specified
install --strip-program=true -m 644 doc/QTLtools_bash_autocomplete.bash /<<BUILDDIR>>/qtltools-1.3.1+dfsg/debian/tmp/etc/bash_completion.d
install: WARNING: ignoring --strip-program option as -s option was not specified
make[1]: Leaving directory '/<<BUILDDIR>>/qtltools-1.3.1+dfsg'
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/qtltools-1.3.1+dfsg'
cd debian/upstream.example && find -type f | LC_ALL=C sort | grep -v examples.tar.xz | \
tar -T - --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner -Jcvf examples.tar.xz
./genes.50percent.chr22.bed.gz
./genes.50percent.chr22.bed.gz.tbi
./genes.covariates.pc50.txt.gz
./genes.simulated.chr22.bed.gz
./genes.simulated.chr22.bed.gz.tbi
./genotypes.chr22.vcf.gz
./genotypes.chr22.vcf.gz.tbi
dh_install
make[1]: Leaving directory '/<<BUILDDIR>>/qtltools-1.3.1+dfsg'
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dh_compress -a
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dwz: debian/qtltools/usr/bin/QTLtools: .debug_info section not present
dh_strip -a -a
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dpkg-shlibdeps: warning: debian/qtltools/usr/bin/QTLtools contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/qtltools/usr/bin/QTLtools was not linked against libblas.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/qtltools/usr/bin/QTLtools was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
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dpkg-deb: building package 'qtltools-dbgsym' in '../qtltools-dbgsym_1.3.1+dfsg-2_armhf.deb'.
dpkg-deb: building package 'qtltools' in '../qtltools_1.3.1+dfsg-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian 2019 test autobuilder <root@raspbian.org> >../qtltools_1.3.1+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-10-16T06:59:00Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
qtltools_1.3.1+dfsg-2_armhf.changes:
------------------------------------
Format: 1.8
Date: Tue, 13 Oct 2020 17:56:30 +0200
Source: qtltools
Binary: qtltools qtltools-dbgsym
Architecture: armhf
Version: 1.3.1+dfsg-2
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian 2019 test autobuilder <root@raspbian.org>
Changed-By: Michael R. Crusoe <crusoe@debian.org>
Description:
qtltools - Tool set for molecular QTL discovery and analysis
Changes:
qtltools (1.3.1+dfsg-2) unstable; urgency=medium
.
* Team upload.
* Install the new files in appropriate locations.
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Files:
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ddb88f33bfd141f8ca2b7e27b9e71a8f 6051 science optional qtltools_1.3.1+dfsg-2_armhf.buildinfo
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: qtltools
Binary: qtltools qtltools-dbgsym
Architecture: armhf
Version: 1.3.1+dfsg-2
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Fri, 16 Oct 2020 06:58:57 +0000
Build-Path: /<<BUILDDIR>>/qtltools-1.3.1+dfsg
Installed-Build-Depends:
autoconf (= 2.69-11.1),
automake (= 1:1.16.2-4),
autopoint (= 0.19.8.1-10),
autotools-dev (= 20180224.1),
base-files (= 11+rpi1),
base-passwd (= 3.5.47),
bash (= 5.0-7),
binutils (= 2.35-2+rpi1),
binutils-arm-linux-gnueabihf (= 2.35-2+rpi1),
binutils-common (= 2.35-2+rpi1),
bsdextrautils (= 2.36-3),
bsdutils (= 1:2.36-3),
build-essential (= 12.8),
bzip2 (= 1.0.8-4),
coreutils (= 8.30-3),
cpp (= 4:10.1.0-1+rpi1),
cpp-10 (= 10.2.0-5+rpi1),
dash (= 0.5.10.2-7),
debconf (= 1.5.74),
debhelper (= 13.2.1),
debianutils (= 4.9.1),
dh-autoreconf (= 19),
dh-strip-nondeterminism (= 1.9.0-1),
diffutils (= 1:3.7-3),
dpkg (= 1.20.5+rpi1),
dpkg-dev (= 1.20.5+rpi1),
dwz (= 0.13-5),
file (= 1:5.38-5),
findutils (= 4.7.0-1),
g++ (= 4:10.1.0-1+rpi1),
g++-10 (= 10.2.0-5+rpi1),
gcc (= 4:10.1.0-1+rpi1),
gcc-10 (= 10.2.0-5+rpi1),
gcc-10-base (= 10.2.0-5+rpi1),
gettext (= 0.19.8.1-10),
gettext-base (= 0.19.8.1-10),
grep (= 3.4-1),
groff-base (= 1.22.4-5),
gzip (= 1.10-2),
hostname (= 3.23),
icu-devtools (= 67.1-4),
init-system-helpers (= 1.58),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.2.53-8),
libarchive-zip-perl (= 1.68-1),
libasan6 (= 10.2.0-5+rpi1),
libatomic1 (= 10.2.0-5+rpi1),
libattr1 (= 1:2.4.48-5),
libaudit-common (= 1:2.8.5-3),
libaudit1 (= 1:2.8.5-3),
libbinutils (= 2.35-2+rpi1),
libblas-dev (= 3.9.0-3),
libblas3 (= 3.9.0-3),
libblkid1 (= 2.36-3),
libboost-iostreams-dev (= 1.71.0.3+b3),
libboost-iostreams1.71-dev (= 1.71.0-6+b1),
libboost-iostreams1.71.0 (= 1.71.0-6+b1),
libboost-program-options-dev (= 1.71.0.3+b3),
libboost-program-options1.71-dev (= 1.71.0-6+b1),
libboost-program-options1.71.0 (= 1.71.0-6+b1),
libboost-regex1.71-dev (= 1.71.0-6+b1),
libboost-regex1.71.0 (= 1.71.0-6+b1),
libboost1.71-dev (= 1.71.0-6+b1),
libbrotli1 (= 1.0.9-2),
libbz2-1.0 (= 1.0.8-4),
libbz2-dev (= 1.0.8-4),
libc-bin (= 2.31-3+rpi1),
libc-dev-bin (= 2.31-3+rpi1),
libc6 (= 2.31-3+rpi1),
libc6-dev (= 2.31-3+rpi1),
libcap-ng0 (= 0.7.9-2.2),
libcc1-0 (= 10.2.0-5+rpi1),
libcom-err2 (= 1.45.6-1),
libcroco3 (= 0.6.13-1),
libcrypt-dev (= 1:4.4.17-1),
libcrypt1 (= 1:4.4.17-1),
libctf-nobfd0 (= 2.35-2+rpi1),
libctf0 (= 2.35-2+rpi1),
libcurl3-gnutls (= 7.72.0-1),
libcurl4-gnutls-dev (= 7.72.0-1),
libdb5.3 (= 5.3.28+dfsg1-0.6),
libdebconfclient0 (= 0.253),
libdebhelper-perl (= 13.2.1),
libdeflate-dev (= 1.6-1),
libdeflate0 (= 1.6-1),
libdpkg-perl (= 1.20.5+rpi1),
libeigen3-dev (= 3.3.8-3),
libelf1 (= 0.181-1),
libffi7 (= 3.3-4),
libfile-stripnondeterminism-perl (= 1.9.0-1),
libgcc-10-dev (= 10.2.0-5+rpi1),
libgcc-s1 (= 10.2.0-5+rpi1),
libgcrypt20 (= 1.8.6-2),
libgdbm-compat4 (= 1.18.1-5.1),
libgdbm6 (= 1.18.1-5.1),
libglib2.0-0 (= 2.66.1-1),
libgmp10 (= 2:6.2.0+dfsg-6),
libgnutls30 (= 3.6.14-2+b1),
libgomp1 (= 10.2.0-5+rpi1),
libgpg-error0 (= 1.38-2),
libgsl-dev (= 2.6+dfsg-2),
libgsl25 (= 2.6+dfsg-2),
libgslcblas0 (= 2.6+dfsg-2),
libgssapi-krb5-2 (= 1.17-10+b3),
libhogweed6 (= 3.6-2),
libhts-dev (= 1.11-2),
libhts3 (= 1.11-2),
libicu-dev (= 67.1-4),
libicu67 (= 67.1-4),
libidn2-0 (= 2.3.0-1),
libisl22 (= 0.22.1-1),
libk5crypto3 (= 1.17-10+b3),
libkeyutils1 (= 1.6.1-2),
libkrb5-3 (= 1.17-10+b3),
libkrb5support0 (= 1.17-10+b3),
libldap-2.4-2 (= 2.4.51+dfsg-1),
liblz4-1 (= 1.9.2-2),
liblzma-dev (= 5.2.4-1),
liblzma5 (= 5.2.4-1),
libmagic-mgc (= 1:5.38-5),
libmagic1 (= 1:5.38-5),
libmount1 (= 2.36-3),
libmpc3 (= 1.2.0~rc1-1),
libmpfr6 (= 4.1.0-3),
libnettle8 (= 3.6-2),
libnghttp2-14 (= 1.41.0-3),
libp11-kit0 (= 0.23.21-2),
libpam-modules (= 1.3.1-5),
libpam-modules-bin (= 1.3.1-5),
libpam-runtime (= 1.3.1-5),
libpam0g (= 1.3.1-5),
libpcre2-8-0 (= 10.34-7),
libpcre3 (= 2:8.39-13),
libperl5.30 (= 5.30.3-4),
libpipeline1 (= 1.5.3-1),
libpsl5 (= 0.21.0-1.1),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
libsasl2-2 (= 2.1.27+dfsg-2),
libsasl2-modules-db (= 2.1.27+dfsg-2),
libseccomp2 (= 2.4.3-1+rpi1),
libselinux1 (= 3.1-2),
libsigsegv2 (= 2.12-2),
libsmartcols1 (= 2.36-3),
libssh2-1 (= 1.8.0-2.1),
libssl1.1 (= 1.1.1g-1),
libstdc++-10-dev (= 10.2.0-5+rpi1),
libstdc++6 (= 10.2.0-5+rpi1),
libsub-override-perl (= 0.09-2),
libsystemd0 (= 246.2-1+rpi1),
libtasn1-6 (= 4.16.0-2),
libtinfo6 (= 6.2-1),
libtool (= 2.4.6-14),
libubsan1 (= 10.2.0-5+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 246.2-1+rpi1),
libunistring2 (= 0.9.10-4),
libuuid1 (= 2.36-3),
libxml2 (= 2.9.10+dfsg-6),
libzstd1 (= 1.4.5+dfsg-4+rpi1),
linux-libc-dev (= 5.7.10-1+rpi1),
login (= 1:4.8.1-1),
lsb-base (= 11.1.0+rpi1),
m4 (= 1.4.18-4),
make (= 4.3-4),
man-db (= 2.9.3-2),
mawk (= 1.3.4.20200120-2),
ncurses-base (= 6.2-1),
ncurses-bin (= 6.2-1),
patch (= 2.7.6-6),
perl (= 5.30.3-4),
perl-base (= 5.30.3-4),
perl-modules-5.30 (= 5.30.3-4),
pkg-config (= 0.29.2-1),
po-debconf (= 1.0.21),
r-mathlib (= 4.0.3-1),
sed (= 4.7-1),
sensible-utils (= 0.0.12+nmu1),
sysvinit-utils (= 2.96-4),
tar (= 1.30+dfsg-7),
util-linux (= 2.36-3),
xz-utils (= 5.2.4-1),
zlib1g (= 1:1.2.11.dfsg-2),
zlib1g-dev (= 1:1.2.11.dfsg-2)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LC_ALL="POSIX"
SOURCE_DATE_EPOCH="1602604590"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
qtltools-dbgsym_1.3.1+dfsg-2_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 77496 bytes: control archive=540 bytes.
384 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: qtltools-dbgsym
Source: qtltools
Version: 1.3.1+dfsg-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 613
Depends: qtltools (= 1.3.1+dfsg-2)
Section: debug
Priority: optional
Description: debug symbols for qtltools
Build-Ids: 2f314db5ef10a9f549ec8aeacda35735d071c4b6
drwxr-xr-x root/root 0 2020-10-13 15:56 ./
drwxr-xr-x root/root 0 2020-10-13 15:56 ./usr/
drwxr-xr-x root/root 0 2020-10-13 15:56 ./usr/lib/
drwxr-xr-x root/root 0 2020-10-13 15:56 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-10-13 15:56 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-10-13 15:56 ./usr/lib/debug/.build-id/2f/
-rw-r--r-- root/root 617208 2020-10-13 15:56 ./usr/lib/debug/.build-id/2f/314db5ef10a9f549ec8aeacda35735d071c4b6.debug
drwxr-xr-x root/root 0 2020-10-13 15:56 ./usr/share/
drwxr-xr-x root/root 0 2020-10-13 15:56 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-10-13 15:56 ./usr/share/doc/qtltools-dbgsym -> qtltools
qtltools_1.3.1+dfsg-2_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 679568 bytes: control archive=1508 bytes.
55 bytes, 1 lines conffiles
936 bytes, 17 lines control
1619 bytes, 23 lines md5sums
Package: qtltools
Version: 1.3.1+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2469
Depends: libblas3 | libblas.so.3, libboost-iostreams1.71.0, libboost-program-options1.71.0, libc6 (>= 2.29), libgcc-s1 (>= 4.0), libgsl25 (>= 2.6), libhts3 (>= 1.10), libstdc++6 (>= 5.2), r-mathlib
Suggests: qtltools-example
Section: science
Priority: optional
Homepage: https://qtltools.github.io/qtltools/
Description: Tool set for molecular QTL discovery and analysis
QTLtools is a tool set for molecular Quantitative Trait Loci (QTL) discovery
and analysis. It allows user to go from the raw sequence data to collection of
molecular QTL in few easy-to-perform steps. QTLtools contains multiple methods
to prepare the data, to discover proximal and distal molecular QTL and to
finally integrate them with GWAS variants and functional annotations of the
genome.
drwxr-xr-x root/root 0 2020-10-13 15:56 ./
drwxr-xr-x root/root 0 2020-10-13 15:56 ./etc/
drwxr-xr-x root/root 0 2020-10-13 15:56 ./etc/bash_completion.d/
-rw-r--r-- root/root 948 2020-10-13 15:56 ./etc/bash_completion.d/QTLtools_bash_autocomplete.bash
drwxr-xr-x root/root 0 2020-10-13 15:56 ./usr/
drwxr-xr-x root/root 0 2020-10-13 15:56 ./usr/bin/
-rwxr-xr-x root/root 2446856 2020-10-13 15:56 ./usr/bin/QTLtools
-rwxr-xr-x root/root 1698 2020-10-13 15:56 ./usr/bin/qtltools_plotTrans.R
-rwxr-xr-x root/root 1043 2020-10-13 15:56 ./usr/bin/qtltools_runFDR_atrans.R
-rwxr-xr-x root/root 4439 2020-10-13 15:56 ./usr/bin/qtltools_runFDR_cis.R
-rwxr-xr-x root/root 810 2020-10-13 15:56 ./usr/bin/qtltools_runFDR_ftrans.R
drwxr-xr-x root/root 0 2020-10-13 15:56 ./usr/share/
drwxr-xr-x root/root 0 2020-10-13 15:56 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-10-13 15:56 ./usr/share/doc/qtltools/
-rw-r--r-- root/root 1130 2020-10-13 15:56 ./usr/share/doc/qtltools/changelog.Debian.gz
-rw-r--r-- root/root 2843 2020-10-10 16:04 ./usr/share/doc/qtltools/copyright
drwxr-xr-x root/root 0 2020-10-13 15:56 ./usr/share/man/
drwxr-xr-x root/root 0 2020-10-13 15:56 ./usr/share/man/man1/
-rw-r--r-- root/root 5916 2020-10-13 15:56 ./usr/share/man/man1/QTLtools-ase.1.gz
-rw-r--r-- root/root 1269 2020-10-13 15:56 ./usr/share/man/man1/QTLtools-bamstat.1.gz
-rw-r--r-- root/root 5108 2020-10-13 15:56 ./usr/share/man/man1/QTLtools-cis.1.gz
-rw-r--r-- root/root 1393 2020-10-13 15:56 ./usr/share/man/man1/QTLtools-correct.1.gz
-rw-r--r-- root/root 1222 2020-10-13 15:56 ./usr/share/man/man1/QTLtools-extract.1.gz
-rw-r--r-- root/root 1693 2020-10-13 15:56 ./usr/share/man/man1/QTLtools-fdensity.1.gz
-rw-r--r-- root/root 2344 2020-10-13 15:56 ./usr/share/man/man1/QTLtools-fenrich.1.gz
-rw-r--r-- root/root 1358 2020-10-13 15:56 ./usr/share/man/man1/QTLtools-gwas.1.gz
-rw-r--r-- root/root 1994 2020-10-13 15:56 ./usr/share/man/man1/QTLtools-mbv.1.gz
-rw-r--r-- root/root 1624 2020-10-13 15:56 ./usr/share/man/man1/QTLtools-pca.1.gz
-rw-r--r-- root/root 3663 2020-10-13 15:56 ./usr/share/man/man1/QTLtools-quan.1.gz
-rw-r--r-- root/root 1530 2020-10-13 15:56 ./usr/share/man/man1/QTLtools-rep.1.gz
-rw-r--r-- root/root 2572 2020-10-13 15:56 ./usr/share/man/man1/QTLtools-rtc-union.1.gz
-rw-r--r-- root/root 4791 2020-10-13 15:56 ./usr/share/man/man1/QTLtools-rtc.1.gz
-rw-r--r-- root/root 3864 2020-10-13 15:56 ./usr/share/man/man1/QTLtools-trans.1.gz
-rw-r--r-- root/root 5014 2020-10-13 15:56 ./usr/share/man/man1/QTLtools.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 65776
Build-Time: 4928
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 485
Job: qtltools_1.3.1+dfsg-2
Machine Architecture: armhf
Package: qtltools
Package-Time: 5483
Source-Version: 1.3.1+dfsg-2
Space: 65776
Status: successful
Version: 1.3.1+dfsg-2
--------------------------------------------------------------------------------
Finished at 2020-10-16T06:59:00Z
Build needed 01:31:23, 65776k disk space