python-sqt →
0.8.0-8 →
armhf → 2023-12-09 06:37:16
sbuild (Debian sbuild) 0.85.0 (04 January 2023) on test2023
+==============================================================================+
| python-sqt 0.8.0-8 (armhf) Sat, 09 Dec 2023 06:33:53 +0000 |
+==============================================================================+
Package: python-sqt
Version: 0.8.0-8
Source Version: 0.8.0-8
Distribution: trixie-staging
Machine Architecture: arm64
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-9d3ae56d-7491-42fb-bae9-9f581ace53d8' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/python-sqt-wQt0Pl/resolver-shOLRs' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.3 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.0 MB]
Fetched 29.3 MB in 5s (5520 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-sqt' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-sqt.git
Please use:
git clone https://salsa.debian.org/med-team/python-sqt.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 126 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main python-sqt 0.8.0-8 (dsc) [2200 B]
Get:2 http://172.17.4.1/private trixie-staging/main python-sqt 0.8.0-8 (tar) [116 kB]
Get:3 http://172.17.4.1/private trixie-staging/main python-sqt 0.8.0-8 (diff) [6984 B]
Fetched 126 kB in 0s (1392 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-sqt-wQt0Pl/python-sqt-0.8.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-sqt-wQt0Pl' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, cython3, python3-cutadapt, python3-pysam, python3-pytest, python3-seaborn, python3-xopen, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, cython3, python3-cutadapt, python3-pysam, python3-pytest, python3-seaborn, python3-xopen, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [820 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [797 B]
Fetched 2226 B in 0s (0 B/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev blt bsdextrautils bsdutils cpp-13
cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dpkg-dev
dwz file fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx
g++-13 gcc-13 gcc-13-base gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libasan8 libatomic1 libblas3 libblkid1 libbrotli1
libbsd0 libcc1-0 libcurl3-gnutls libdebhelper-perl libdeflate0 libdpkg-perl
libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libfontconfig1 libfreetype6 libfribidi0 libgcc-13-dev libgcc-s1 libgfortran5
libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b libhts3 libhtscodecs2
libicu72 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery
libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0
liblcms2-2 liblerc4 libmagic-mgc libmagic1 libmount1 libnghttp2-14
libopenjp2-7 libpipeline1 libpng16-16 libpsl5 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev
libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libraqm0 librtmp1
libsharpyuv0 libsmartcols1 libssh2-1 libstdc++-13-dev libstdc++6
libsub-override-perl libtcl8.6 libtiff6 libtk8.6 libtool libubsan1
libuchardet0 libuuid1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6
libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1
libxslt1.1 libxss1 m4 man-db media-types mount pigz po-debconf
python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs
python3-attr python3-brotli python3-contourpy python3-cutadapt
python3-cycler python3-dateutil python3-decorator python3-dev
python3-distutils python3-dnaio python3-fonttools python3-fs
python3-iniconfig python3-kiwisolver python3-lib2to3 python3-lxml
python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-numpy
python3-packaging python3-pandas python3-pandas-lib python3-pil
python3-pil.imagetk python3-pkg-resources python3-pluggy python3-pyparsing
python3-pysam python3-pytest python3-scipy python3-seaborn
python3-setuptools python3-six python3-sympy python3-tk python3-tz
python3-ufolib2 python3-xopen python3.11 python3.11-dev python3.11-minimal
sensible-utils tk8.6-blt2.5 unicode-data util-linux x11-common zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc blt-demo gcc-13-locales
cpp-13-doc cython-doc dh-make flit python3-build python3-installer
python3-wheel debian-keyring gcc-13-doc gettext-doc libasprintf-dev
libgettextpo-dev groff git bzr low-memory-monitor libjs-jquery-ui-docs
liblcms2-utils cryptsetup-bin libstdc++-13-doc tcl8.6 tk8.6 libtool-doc
gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
nfs-common libmail-box-perl python3-doc python3-venv python-attr-doc
python-cycler-doc python-lxml-doc cm-super-minimal dvipng ffmpeg
fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common
python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5
python3-sip python3-tornado texlive-extra-utils texlive-latex-extra
python-mpmath-doc python3-gmpy2 gfortran python-pandas-doc
python3-statsmodels python-pil-doc python-pyparsing-doc python-scipy-doc
python-setuptools-doc texlive-fonts-extra python-sympy-doc tix
python3-tk-dbg python3.11-venv python3.11-doc binfmt-support dosfstools kbd
util-linux-extra util-linux-locales
Recommended packages:
libalgorithm-merge-perl curl | wget | lynx ca-certificates
libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common publicsuffix libltdl-dev uuid-runtime
libmail-sendmail-perl python3-bs4 python3-html5lib python3-bottleneck
python3-numexpr python3-odf python3-openpyxl python3-tables python3-jinja2
python3-olefile python3-pygments python3-patsy isympy-common
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev blt bsdextrautils cython3
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libblas3
libbrotli1 libbsd0 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1
libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3
libharfbuzz0b libhts3 libhtscodecs2 libicu72 libimagequant0 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc
libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libmagic-mgc
libmagic1 libnghttp2-14 libopenjp2-7 libpipeline1 libpng16-16 libpsl5
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11
libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0
libraqm0 librtmp1 libsharpyuv0 libssh2-1 libsub-override-perl libtcl8.6
libtiff6 libtk8.6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3
libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxrender1 libxslt1.1 libxss1 m4 man-db media-types pigz po-debconf
python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs
python3-attr python3-brotli python3-contourpy python3-cutadapt
python3-cycler python3-dateutil python3-decorator python3-dev
python3-distutils python3-dnaio python3-fonttools python3-fs
python3-iniconfig python3-kiwisolver python3-lib2to3 python3-lxml
python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-numpy
python3-packaging python3-pandas python3-pandas-lib python3-pil
python3-pil.imagetk python3-pkg-resources python3-pluggy python3-pyparsing
python3-pysam python3-pytest python3-scipy python3-seaborn
python3-setuptools python3-six python3-sympy python3-tk python3-tz
python3-ufolib2 python3-xopen python3.11 python3.11-dev python3.11-minimal
sbuild-build-depends-main-dummy sensible-utils tk8.6-blt2.5 unicode-data
x11-common zlib1g-dev
The following packages will be upgraded:
bsdutils cpp-13 dpkg-dev g++-13 gcc-13 gcc-13-base libasan8 libatomic1
libblkid1 libcc1-0 libdpkg-perl libgcc-13-dev libgcc-s1 libgomp1 libmount1
libsmartcols1 libstdc++-13-dev libstdc++6 libubsan1 libuuid1 mount
util-linux
22 upgraded, 151 newly installed, 0 to remove and 44 not upgraded.
1 not fully installed or removed.
Need to get 142 MB/144 MB of archives.
After this operation, 448 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf mount armhf 2.39.2-6 [134 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf bsdutils armhf 1:2.39.2-6 [86.5 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf util-linux armhf 2.39.2-6 [1110 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf pigz armhf 2.8-1 [50.0 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-minimal armhf 3.11.6-3 [800 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf libcc1-0 armhf 13.2.0-7+rpi1 [35.4 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf gcc-13-base armhf 13.2.0-7+rpi1 [41.0 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libgcc-s1 armhf 13.2.0-7+rpi1 [36.3 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf libgomp1 armhf 13.2.0-7+rpi1 [104 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf libatomic1 armhf 13.2.0-7+rpi1 [8448 B]
Get:12 http://172.17.4.1/private trixie-staging/main armhf libasan8 armhf 13.2.0-7+rpi1 [2391 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf libubsan1 armhf 13.2.0-7+rpi1 [964 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf g++-13 armhf 13.2.0-7+rpi1 [8137 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf libstdc++-13-dev armhf 13.2.0-7+rpi1 [2208 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf libgcc-13-dev armhf 13.2.0-7+rpi1 [764 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf gcc-13 armhf 13.2.0-7+rpi1 [14.7 MB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf cpp-13 armhf 13.2.0-7+rpi1 [7372 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf libstdc++6 armhf 13.2.0-7+rpi1 [578 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf python3.11-minimal armhf 3.11.6-3 [1674 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf python3-minimal armhf 3.11.4-5 [26.2 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf media-types all 10.1.0 [26.9 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf libuuid1 armhf 2.39.2-6 [28.1 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-stdlib armhf 3.11.6-3 [1679 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf python3.11 armhf 3.11.6-3 [586 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf libpython3-stdlib armhf 3.11.4-5 [9200 B]
Get:28 http://172.17.4.1/private trixie-staging/main armhf python3 armhf 3.11.4-5 [26.2 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf libblkid1 armhf 2.39.2-6 [145 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf libmount1 armhf 2.39.2-6 [167 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf libsmartcols1 armhf 2.39.2-6 [102 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.8-1 [65.5 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.2-6 [81.2 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-1 [1358 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf sensible-utils all 0.0.20 [19.3 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-14 [157 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-14 [496 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.1.0-2 [280 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf libpng16-16 armhf 1.6.40-2 [258 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [366 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.14.2-6 [316 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.14.2-6 [367 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.7-4 [111 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.7-1 [328 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.7-1 [729 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [477 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf cython3 armhf 0.29.36-3 [1731 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.8 [82.1 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
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Get:77 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-14 [1203 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.8 [956 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf python3-lib2to3 all 3.11.5-1 [77.5 kB]
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Get:87 http://172.17.4.1/private trixie-staging/main armhf python3-pkg-resources all 68.1.2-2 [241 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf python3-setuptools all 68.1.2-2 [468 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf dh-python all 6.20231204 [108 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf fonts-lyx all 2.3.7-1 [186 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.58.0-1 [61.7 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-3 [195 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 8.4.0-2+rpi1 [358 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf libexpat1-dev armhf 2.5.0-2 [130 kB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 13.2.0-7+rpi1 [247 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.78.1-4 [1257 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.0.1-1 [2098 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libhtscodecs2 armhf 1.5.2-1 [60.0 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf libhts3 armhf 1.18+ds-1 [380 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf libimagequant0 armhf 2.18.0-1 [30.5 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf libjs-sphinxdoc all 7.2.6-2 [149 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1 [24.4 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf liblcms2-2 armhf 2.14-2 [124 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-4 [132 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf libopenjp2-7 armhf 2.5.0-2 [164 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf libpython3.11 armhf 3.11.6-3 [1662 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-3 [901 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-dev armhf 3.11.6-3 [3271 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf libpython3-dev armhf 3.11.4-5 [9432 B]
Get:122 http://172.17.4.1/private trixie-staging/main armhf libpython3-all-dev armhf 3.11.4-5 [1068 B]
Get:123 http://172.17.4.1/private trixie-staging/main armhf libqhull-r8.0 armhf 2020.2-6 [216 kB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf libraqm0 armhf 0.10.1-1 [11.7 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.3.2-0.3 [106 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.3.2-0.3 [261 kB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-1 [298 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf libwebpdemux2 armhf 1.3.2-0.3 [106 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf libwebpmux3 armhf 1.3.2-0.3 [116 kB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf libxslt1.1 armhf 1.1.35-1 [221 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf python-matplotlib-data all 3.6.3-1 [2744 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf python3-all armhf 3.11.4-5 [1060 B]
Get:133 http://172.17.4.1/private trixie-staging/main armhf python3.11-dev armhf 3.11.6-3 [508 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf python3-dev armhf 3.11.4-5 [26.2 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf python3-all-dev armhf 3.11.4-5 [1068 B]
Get:136 http://172.17.4.1/private trixie-staging/main armhf python3-appdirs all 1.4.4-4 [12.5 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf python3-attr all 23.1.0-2 [67.1 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf python3-brotli armhf 1.1.0-2 [290 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf python3-numpy armhf 1:1.24.2-1 [3826 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf python3-contourpy armhf 1.0.7-1 [141 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf python3-xopen all 1.7.0-2 [16.9 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf python3-dnaio armhf 1.0.1-1 [51.5 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf python3-cutadapt armhf 4.4-1 [162 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf python3-cycler all 0.11.0-1 [8020 B]
Get:145 http://172.17.4.1/private trixie-staging/main armhf python3-six all 1.16.0-4 [17.5 kB]
Get:146 http://172.17.4.1/private trixie-staging/main armhf python3-dateutil all 2.8.2-3 [78.4 kB]
Get:147 http://172.17.4.1/private trixie-staging/main armhf python3-decorator all 5.1.1-5 [15.1 kB]
Get:148 http://172.17.4.1/private trixie-staging/main armhf python3-scipy armhf 1.10.1-5+rpi1 [13.6 MB]
Get:149 http://172.17.4.1/private trixie-staging/main armhf python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB]
Get:150 http://172.17.4.1/private trixie-staging/main armhf python3-mpmath all 1.2.1-2 [418 kB]
Get:151 http://172.17.4.1/private trixie-staging/main armhf python3-sympy all 1.12-6 [3868 kB]
Get:152 http://172.17.4.1/private trixie-staging/main armhf python3-tz all 2023.3.post1-1 [30.8 kB]
Get:153 http://172.17.4.1/private trixie-staging/main armhf python3-fs all 2.4.16-2 [95.2 kB]
Get:154 http://172.17.4.1/private trixie-staging/main armhf python3-lxml armhf 4.9.3-1 [1039 kB]
Get:155 http://172.17.4.1/private trixie-staging/main armhf python3-lz4 armhf 4.0.2+dfsg-1+b1 [23.9 kB]
Get:156 http://172.17.4.1/private trixie-staging/main armhf unicode-data all 15.1.0-1 [8547 kB]
Get:157 http://172.17.4.1/private trixie-staging/main armhf python3-fonttools armhf 4.46.0-1 [1271 kB]
Get:158 http://172.17.4.1/private trixie-staging/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get:159 http://172.17.4.1/private trixie-staging/main armhf python3-kiwisolver armhf 1.4.4-1 [52.3 kB]
Get:160 http://172.17.4.1/private trixie-staging/main armhf python3-pil armhf 10.0.0-1 [437 kB]
Get:161 http://172.17.4.1/private trixie-staging/main armhf python3-tk armhf 3.11.5-1 [95.9 kB]
Get:162 http://172.17.4.1/private trixie-staging/main armhf python3-pil.imagetk armhf 10.0.0-1 [75.2 kB]
Get:163 http://172.17.4.1/private trixie-staging/main armhf python3-pyparsing all 3.1.1-1 [145 kB]
Get:164 http://172.17.4.1/private trixie-staging/main armhf python3-packaging all 23.2-1 [44.8 kB]
Get:165 http://172.17.4.1/private trixie-staging/main armhf python3-matplotlib armhf 3.6.3-1 [7453 kB]
Get:166 http://172.17.4.1/private trixie-staging/main armhf python3-pandas-lib armhf 1.5.3+dfsg-6 [3000 kB]
Get:167 http://172.17.4.1/private trixie-staging/main armhf python3-pandas all 1.5.3+dfsg-6 [2886 kB]
Get:168 http://172.17.4.1/private trixie-staging/main armhf python3-pluggy all 1.3.0-1 [25.1 kB]
Get:169 http://172.17.4.1/private trixie-staging/main armhf python3-pysam armhf 0.22.0+ds-1+rpi1 [2903 kB]
Get:170 http://172.17.4.1/private trixie-staging/main armhf python3-pytest all 7.4.3-1 [239 kB]
Get:171 http://172.17.4.1/private trixie-staging/main armhf python3-seaborn all 0.12.2-1 [215 kB]
debconf: delaying package configuration, since apt-utils is not installed
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No schema files found: doing nothing.
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invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libnghttp2-14:armhf (1.58.0-1) ...
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Setting up libdeflate0:armhf (1.18-1) ...
Setting up gettext-base (0.21-14) ...
Setting up m4 (1.4.19-4) ...
Setting up libqhull-r8.0:armhf (2020.2-6) ...
Setting up file (1:5.45-2) ...
Setting up libgomp1:armhf (13.2.0-7+rpi1) ...
Setting up libjbig0:armhf (2.1-6.1) ...
Setting up unicode-data (15.1.0-1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libexpat1-dev:armhf (2.5.0-2) ...
Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ...
Setting up libx11-data (2:1.8.7-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libfribidi0:armhf (1.0.13-3) ...
Setting up libimagequant0:armhf (2.18.0-1) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16:armhf (1.6.40-2) ...
Setting up libtcl8.6:armhf (8.6.13+dfsg-2) ...
Setting up autopoint (0.21-14) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up libdpkg-perl (1.22.1+rpi1) ...
Setting up libgfortran5:armhf (13.2.0-7+rpi1) ...
Setting up autoconf (2.71-3) ...
Setting up libwebp7:armhf (1.3.2-0.3) ...
Setting up libubsan1:armhf (13.2.0-7+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-3) ...
Setting up mount (2.39.2-6) ...
Setting up sensible-utils (0.0.20) ...
Setting up pigz (2.8-1) ...
Setting up libtiff6:armhf (4.5.1+git230720-1) ...
Setting up libasan8:armhf (13.2.0-7+rpi1) ...
Setting up libuchardet0:armhf (0.0.8-1) ...
Setting up libopenjp2-7:armhf (2.5.0-2) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libssh2-1:armhf (1.11.0-3) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up python-matplotlib-data (3.6.3-1) ...
Setting up libwebpmux3:armhf (1.3.2-0.3) ...
Setting up libbsd0:armhf (0.11.7-4) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up libcc1-0:armhf (13.2.0-7+rpi1) ...
Setting up libpython3-stdlib:armhf (3.11.4-5) ...
Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up python3.11 (3.11.6-3) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-14) ...
Setting up libpython3.11:armhf (3.11.6-3) ...
Setting up libtool (2.4.7-7) ...
Setting up fontconfig-config (2.14.2-6) ...
Setting up libwebpdemux2:armhf (1.3.2-0.3) ...
Setting up libcurl3-gnutls:armhf (8.4.0-2+rpi1) ...
Setting up python3 (3.11.4-5) ...
Setting up python3-tz (2023.3.post1-1) ...
Setting up dpkg-dev (1.22.1+rpi1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up python3-six (1.16.0-4) ...
Setting up dh-autoreconf (20) ...
Setting up python3-decorator (5.1.1-5) ...
Setting up python3-packaging (23.2-1) ...
Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
Setting up python3-pyparsing (3.1.1-1) ...
Setting up libfreetype6:armhf (2.13.2+dfsg-1) ...
Setting up libpython3.11-dev:armhf (3.11.6-3) ...
Setting up python3-brotli (1.1.0-2) ...
Setting up python3-cycler (0.11.0-1) ...
Setting up python3-kiwisolver (1.4.4-1) ...
Setting up cython3 (0.29.36-3) ...
Setting up libjs-sphinxdoc (7.2.6-2) ...
Setting up python3-pluggy (1.3.0-1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up libgcc-13-dev:armhf (13.2.0-7+rpi1) ...
Setting up groff-base (1.23.0-3) ...
Setting up libxslt1.1:armhf (1.1.35-1) ...
Setting up libx11-6:armhf (2:1.8.7-1) ...
Setting up libharfbuzz0b:armhf (8.0.1-1) ...
Setting up python3-dateutil (2.8.2-3) ...
Setting up libfontconfig1:armhf (2.14.2-6) ...
Setting up python3-mpmath (1.2.1-2) ...
Setting up python3-lib2to3 (3.11.5-1) ...
Setting up python3-appdirs (1.4.4-4) ...
Setting up libstdc++-13-dev:armhf (13.2.0-7+rpi1) ...
Setting up liblbfgsb0:armhf (3.0+dfsg.4-1) ...
Setting up python3-pkg-resources (68.1.2-2) ...
Setting up python3-distutils (3.11.5-1) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up python3-sympy (1.12-6) ...
Setting up python3-attr (23.1.0-2) ...
Setting up libhts3:armhf (1.18+ds-1) ...
Setting up python3-pysam (0.22.0+ds-1+rpi1) ...
Setting up libpython3-dev:armhf (3.11.4-5) ...
Setting up python3-setuptools (68.1.2-2) ...
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up python3-lz4 (4.0.2+dfsg-1+b1) ...
Setting up python3.11-dev (3.11.6-3) ...
Setting up python3-pytest (7.4.3-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up python3-all (3.11.4-5) ...
Setting up man-db (2.12.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-fs (2.4.16-2) ...
Setting up python3-xopen (1.7.0-2) ...
Setting up libpython3-all-dev:armhf (3.11.4-5) ...
Setting up libraqm0:armhf (0.10.1-1) ...
Setting up python3-dev (3.11.4-5) ...
Setting up gcc-13 (13.2.0-7+rpi1) ...
Setting up python3-numpy (1:1.24.2-1) ...
Setting up python3-lxml:armhf (4.9.3-1) ...
Setting up python3-contourpy (1.0.7-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up python3-dnaio (1.0.1-1) ...
Setting up dh-python (6.20231204) ...
Setting up python3-all-dev (3.11.4-5) ...
Setting up g++-13 (13.2.0-7+rpi1) ...
Setting up libxft2:armhf (2.3.6-1) ...
Setting up python3-scipy (1.10.1-5+rpi1) ...
Setting up libtk8.6:armhf (8.6.13-2) ...
Setting up python3-pandas-lib:armhf (1.5.3+dfsg-6) ...
Setting up debhelper (13.11.8) ...
Setting up python3-pandas (1.5.3+dfsg-6) ...
Setting up python3-cutadapt (4.4-1) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ...
Setting up blt (2.5.3+dfsg-4.1) ...
Setting up python3-tk:armhf (3.11.5-1) ...
Setting up python3-pil:armhf (10.0.0-1) ...
Setting up python3-pil.imagetk:armhf (10.0.0-1) ...
Setting up python3-ufolib2 (0.16.0+dfsg1-1) ...
Setting up python3-fonttools (4.46.0-1) ...
Setting up python3-matplotlib (3.6.3-1) ...
Setting up python3-seaborn (0.12.2-1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.37-12+rpi2) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.47-v8+ #1 SMP PREEMPT Fri Sep 1 07:05:33 BST 2023 arm64 (aarch64)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.1+rpi1 g++-12_12.3.0-10+rpi1 g++-13_13.2.0-7+rpi1 gcc-12_12.3.0-10+rpi1 gcc-13_13.2.0-7+rpi1 libc6-dev_2.37-12+rpi2 libstdc++-12-dev_12.3.0-10+rpi1 libstdc++-13-dev_13.2.0-7+rpi1 libstdc++6_13.2.0-7+rpi1 linux-libc-dev_6.5.6-1+rpi1
Package versions: adduser_3.137 apt_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.2 bash_5.2.15-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 blt_2.5.3+dfsg-4.1 bsdextrautils_2.39.2-6 bsdutils_1:2.39.2-6 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-10+rpi1 cpp-13_13.2.0-7+rpi1 cython3_0.29.36-3 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.8 debianutils_5.14 dh-autoreconf_20 dh-python_6.20231204 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dpkg_1.22.1+rpi1 dpkg-dev_1.22.1+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig-config_2.14.2-6 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-lyx_2.3.7-1 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-10+rpi1 g++-13_13.2.0-7+rpi1 gcc_4:13.2.0-1+rpi1 gcc-10-base_10.4.0-7+rpi1 gcc-12_12.3.0-10+rpi1 gcc-12-base_12.3.0-10+rpi1 gcc-13_13.2.0-7+rpi1 gcc-13-base_13.2.0-7+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-14 gettext-base_0.21-14 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libapt-pkg6.0_2.7.6 libarchive-zip-perl_1.68-1 libasan8_13.2.0-7+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-7+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libbinutils_2.41-6+rpi1 libblas3_3.11.0-2 libblkid1_2.39.2-6 libbrotli1_1.1.0-2 libbsd0_0.11.7-4 libbz2-1.0_1.0.8-5+b2 libc-bin_2.37-12+rpi2 libc-dev-bin_2.37-12+rpi2 libc6_2.37-12+rpi2 libc6-dev_2.37-12+rpi2 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-4 libcc1-0_13.2.0-7+rpi1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41-6+rpi1 libctf0_2.41-6+rpi1 libcurl3-gnutls_8.4.0-2+rpi1 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.271 libdebhelper-perl_13.11.8 libdeflate0_1.18-1 libdpkg-perl_1.22.1+rpi1 libelf1_0.188-2.1+rpi1 libexpat1_2.5.0-2 libexpat1-dev_2.5.0-2 libext2fs2_1.47.0-2 libfakeroot_1.32.1-1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libfontconfig1_2.14.2-6 libfreetype6_2.13.2+dfsg-1 libfribidi0_1.0.13-3 libgcc-12-dev_12.3.0-10+rpi1 libgcc-13-dev_13.2.0-7+rpi1 libgcc-s1_13.2.0-7+rpi1 libgcrypt20_1.10.2-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_13.2.0-7+rpi1 libglib2.0-0_2.78.1-4 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.1-4 libgomp1_13.2.0-7+rpi1 libgpg-error0_1.47-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20.1-4 libharfbuzz0b_8.0.1-1 libhogweed6_3.9.1-2 libhts3_1.18+ds-1 libhtscodecs2_1.5.2-1 libicu72_72.1-4 libidn2-0_2.3.4-1 libimagequant0_2.18.0-1 libisl23_0.26-3 libjansson4_2.14-2 libjbig0_2.1-6.1 libjpeg62-turbo_1:2.1.5-2 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-jquery-ui_1.13.2+dfsg-1 libjs-sphinxdoc_7.2.6-2 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libk5crypto3_1.20.1-4 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-4 libkrb5support0_1.20.1-4 libksba8_1.6.4-2 liblapack3_3.11.0-2 liblbfgsb0_3.0+dfsg.4-1 liblcms2-2_2.14-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1 liblerc4_4.0.0+ds-4 liblocale-gettext-perl_1.07-6 liblz4-1_1.9.4-1+rpi1+b1 liblzma5_5.4.4-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmount1_2.39.2-6 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncursesw6_6.4+20231016-1 libnettle8_3.9.1-2 libnghttp2-14_1.58.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libopenjp2-7_2.5.0-2 libp11-kit0_0.25.0-5 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpcre2-8-0_10.42-4 libperl5.36_5.36.0-9 libpipeline1_1.5.7-1 libpng16-16_1.6.40-2 libpsl5_0.21.2-1+b1 libpython3-all-dev_3.11.4-5 libpython3-dev_3.11.4-5 libpython3-stdlib_3.11.4-5 libpython3.11_3.11.6-3 libpython3.11-dev_3.11.6-3 libpython3.11-minimal_3.11.6-3 libpython3.11-stdlib_3.11.6-3 libqhull-r8.0_2020.2-6 libraqm0_0.10.1-1 libreadline8_8.2-1.3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg1-3 libsasl2-modules-db_2.1.28+dfsg1-3 libseccomp2_2.5.4-1+rpi1+b1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol2_3.5-1 libsframe1_2.41-6+rpi1 libsharpyuv0_1.3.2-0.3 libsmartcols1_2.39.2-6 libsqlite3-0_3.43.2-1 libss2_1.47.0-2 libssh2-1_1.11.0-3 libssl3_3.0.11-1 libstdc++-12-dev_12.3.0-10+rpi1 libstdc++-13-dev_13.2.0-7+rpi1 libstdc++6_13.2.0-7+rpi1 libsub-override-perl_0.09-4 libsystemd0_254.5-1+rpi1 libtasn1-6_4.19.0-3 libtcl8.6_8.6.13+dfsg-2 libtext-charwidth-perl_0.04-11 libtext-iconv-perl_1.7-8 libtiff6_4.5.1+git230720-1 libtinfo6_6.4+20231016-1 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtk8.6_8.6.13-2 libtool_2.4.7-7 libubsan1_13.2.0-7+rpi1 libuchardet0_0.0.8-1 libudev1_254.5-1+rpi1 libunistring5_1.1-2 libuuid1_2.39.2-6 libwebp7_1.3.2-0.3 libwebpdemux2_1.3.2-0.3 libwebpmux3_1.3.2-0.3 libx11-6_2:1.8.7-1 libx11-data_2:1.8.7-1 libxau6_1:1.0.9-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1.3 libxrender1_1:0.9.10-1.1 libxslt1.1_1.1.35-1 libxss1_1:1.2.3-1 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.6-1+rpi1 login_1:4.13+dfsg1-3 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-1 mawk_1.3.4.20230808-1 media-types_10.1.0 mount_2.39.2-6 ncurses-base_6.4+20231016-1 ncurses-bin_6.4+20231016-1 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.36.0-9 perl-base_5.36.0-9 perl-modules-5.36_5.36.0-9 pigz_2.8-1 pinentry-curses_1.2.1-1 po-debconf_1.0.21+nmu1 python-matplotlib-data_3.6.3-1 python3_3.11.4-5 python3-all_3.11.4-5 python3-all-dev_3.11.4-5 python3-appdirs_1.4.4-4 python3-attr_23.1.0-2 python3-brotli_1.1.0-2 python3-contourpy_1.0.7-1 python3-cutadapt_4.4-1 python3-cycler_0.11.0-1 python3-dateutil_2.8.2-3 python3-decorator_5.1.1-5 python3-dev_3.11.4-5 python3-distutils_3.11.5-1 python3-dnaio_1.0.1-1 python3-fonttools_4.46.0-1 python3-fs_2.4.16-2 python3-iniconfig_1.1.1-2 python3-kiwisolver_1.4.4-1 python3-lib2to3_3.11.5-1 python3-lxml_4.9.3-1 python3-lz4_4.0.2+dfsg-1+b1 python3-matplotlib_3.6.3-1 python3-minimal_3.11.4-5 python3-mpmath_1.2.1-2 python3-numpy_1:1.24.2-1 python3-packaging_23.2-1 python3-pandas_1.5.3+dfsg-6 python3-pandas-lib_1.5.3+dfsg-6 python3-pil_10.0.0-1 python3-pil.imagetk_10.0.0-1 python3-pkg-resources_68.1.2-2 python3-pluggy_1.3.0-1 python3-pyparsing_3.1.1-1 python3-pysam_0.22.0+ds-1+rpi1 python3-pytest_7.4.3-1 python3-scipy_1.10.1-5+rpi1 python3-seaborn_0.12.2-1 python3-setuptools_68.1.2-2 python3-six_1.16.0-4 python3-sympy_1.12-6 python3-tk_3.11.5-1 python3-tz_2023.3.post1-1 python3-ufolib2_0.16.0+dfsg1-1 python3-xopen_1.7.0-2 python3.11_3.11.6-3 python3.11-dev_3.11.6-3 python3.11-minimal_3.11.6-3 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.08-3 tar_1.34+dfsg-1.2 tk8.6-blt2.5_2.5.3+dfsg-4.1 tzdata_2023c-10 unicode-data_15.1.0-1 usr-is-merged_37 util-linux_2.39.2-6 x11-common_1:7.7+23 xz-utils_5.4.4-0.1 zlib1g_1:1.2.13.dfsg-3 zlib1g-dev_1:1.2.13.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: python-sqt
Binary: python3-sqt
Architecture: any
Version: 0.8.0-8
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>
Homepage: https://bitbucket.org/marcelm/sqt
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/python-sqt
Vcs-Git: https://salsa.debian.org/med-team/python-sqt.git
Testsuite: autopkgtest-pkg-pybuild
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, cython3, python3-cutadapt <!nocheck>, python3-pysam <!nocheck>, python3-pytest <!nocheck>, python3-seaborn <!nocheck>, python3-xopen <!nocheck>
Package-List:
python3-sqt deb python optional arch=any
Checksums-Sha1:
6b7dee79483ed5ff1168329817a4999da6007033 116482 python-sqt_0.8.0.orig.tar.gz
05f456d5047bc1c4c62de6e58037df9cd209b1de 6984 python-sqt_0.8.0-8.debian.tar.xz
Checksums-Sha256:
86a938fcf41d64a175c234b2156b674d5f4d615fa869341d985c0e05480e5f22 116482 python-sqt_0.8.0.orig.tar.gz
1f7426e8a6836dbcc4d98ec653707778b07ea7a8e1ccb6417ca245bafcb0241d 6984 python-sqt_0.8.0-8.debian.tar.xz
Files:
ae2f5949c3841194ad87c4fb6036a8db 116482 python-sqt_0.8.0.orig.tar.gz
96982dea78fdd92da470b6e3a887dd71 6984 python-sqt_0.8.0-8.debian.tar.xz
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gpgv: Signature made Wed Dec 6 13:52:44 2023 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./python-sqt_0.8.0-8.dsc: no acceptable signature found
dpkg-source: info: extracting python-sqt in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-sqt_0.8.0.orig.tar.gz
dpkg-source: info: unpacking python-sqt_0.8.0-8.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fixme_ignore_failing_test.patch
dpkg-source: info: applying fixme_ignore_failing_test2.patch
dpkg-source: info: applying pytest.patch
dpkg-source: info: applying python-3.12.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=124
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-9d3ae56d-7491-42fb-bae9-9f581ace53d8
SCHROOT_UID=114
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mRaspbian pi5 test autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package python-sqt
dpkg-buildpackage: info: source version 0.8.0-8
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from python-sqt-0.8.0/debian/source/options: --extend-diff-ignore=sqt/_version.py
debian/rules clean
dh clean --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
pybuild --clean -i python{version} -p 3.11
I: pybuild base:310: python3.11 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
rm -rf .pybuild/
find . -name \*.pyc -exec rm {} \;
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/python3-sqt.substvars debian/files
rm -fr -- debian/python3-sqt/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules binary-arch
dh binary-arch --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
pybuild --configure -i python{version} -p 3.11
I: pybuild base:310: python3.11 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
pybuild --build -i python{version} -p 3.11
I: pybuild base:310: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/_codons.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/align.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/ansicolor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/args.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/cigar.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/colorspace.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/compat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/dna.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/intervaltree.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/math.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/qualtrim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/reads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/region.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/io
copying sqt/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/io
copying sqt/io/bam.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/io
copying sqt/io/fasta.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/io
copying sqt/io/gtf.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/io
copying sqt/io/sff.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/addadapt.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/align.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/bam2fastq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/bameof.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/bamstats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/chars.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/checkfastqpe.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/checkvcfref.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/compare_sequences.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/coverage.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/cutvect.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/fastaextract.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/fastagrep.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/fastastats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/fastxmod.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/fixbam64.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/histogram.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/mutate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/qgramfreq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/qualityguess.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/randomseq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/readcov.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/readlenhisto.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/samfixn.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/samsetop.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/simreads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/translate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands
UPDATING /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/_version.py
set /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/_version.py to '0.8.0'
running build_ext
/<<PKGBUILDDIR>>/setup.py:48: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION):
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/sqt/_helpers.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling sqt/_helpers.pyx because it changed.
[1/1] Cythonizing sqt/_helpers.pyx
building 'sqt._helpers' extension
creating build
creating build/temp.linux-armv7l-cpython-311
creating build/temp.linux-armv7l-cpython-311/sqt
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c sqt/_helpers.c -o build/temp.linux-armv7l-cpython-311/sqt/_helpers.o
sqt/_helpers.c: In function ‘__pyx_pf_3sqt_8_helpers_12nt_to_aa’:
sqt/_helpers.c:6722:51: warning: array subscript has type ‘char’ [-Wchar-subscripts]
6722 | __pyx_v_nt0 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[__pyx_v_i])]);
| ~~~~~~~~~~^~~~~~~~~~~~
sqt/_helpers.c:6731:51: warning: array subscript has type ‘char’ [-Wchar-subscripts]
6731 | __pyx_v_nt1 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[(__pyx_v_i + 1)])]);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
sqt/_helpers.c:6740:51: warning: array subscript has type ‘char’ [-Wchar-subscripts]
6740 | __pyx_v_nt2 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[(__pyx_v_i + 2)])]);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/sqt/_helpers.o -L/usr/lib/arm-linux-gnueabihf -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/_helpers.cpython-311-arm-linux-gnueabihf.so
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
LC_ALL=C.UTF-8 dh_auto_test
pybuild --test --test-pytest -i python{version} -p 3.11
I: pybuild base:310: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build; python3.11 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.11.6, pytest-7.4.3, pluggy-1.3.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build
configfile: pytest.ini
collected 45 items
tests/testalign.py ....... [ 15%]
tests/testcigar.py ........... [ 40%]
tests/testcolorspace.py .. [ 44%]
tests/testdna.py ...... [ 57%]
tests/testfasta.py ............. [ 86%]
tests/testindexedfasta.py ... [ 93%]
tests/testintervaltree.py . [ 95%]
tests/testmedian.py . [ 97%]
tests/testregion.py . [100%]
============================== 45 passed in 7.64s ==============================
rm -fr -- /tmp/dh-xdg-rundir-Kn0uYIvZ
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
rm -f -- debian/python3-sqt.substvars
rm -fr -- debian/.debhelper/generated/python3-sqt/ debian/python3-sqt/ debian/tmp/
dh_auto_install --destdir=debian/python3-sqt/ -a -O--buildsystem=pybuild
install -m0755 -d /<<PKGBUILDDIR>>/debian/python3-sqt
pybuild --install -i python{version} -p 3.11 --dest-dir /<<PKGBUILDDIR>>/debian/python3-sqt
I: pybuild base:310: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-sqt
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_py
UPDATING /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/_version.py
set /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/_version.py to '0.8.0'
running build_ext
/<<PKGBUILDDIR>>/setup.py:48: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION):
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/__main__.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/_codons.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/align.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/ansicolor.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/args.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/cigar.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/colorspace.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/compat.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/dna.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/intervaltree.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/math.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/qualtrim.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/reads.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/region.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/utils.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/io/bam.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/io/fasta.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/io/gtf.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/io/sff.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/io/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/io/__pycache__/fasta.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/io/__pycache__/gtf.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/addadapt.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/align.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/bam2fastq.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/bameof.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/bamstats.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/chars.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/checkfastqpe.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/checkvcfref.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/compare_sequences.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/coverage.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/cutvect.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/fastaextract.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/fastagrep.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/fastastats.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/fastxmod.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/fixbam64.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/histogram.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/mutate.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/qgramfreq.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/qualityguess.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/randomseq.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/readcov.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/readlenhisto.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/samfixn.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/samsetop.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/simreads.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/commands/translate.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/_helpers.cpython-311-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/_version.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/args.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/compat.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/_codons.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/cigar.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/align.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/utils.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/colorspace.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/dna.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/intervaltree.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/math.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/region.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/sqt/_version.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/.pytest_cache
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/.pytest_cache/v
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/.pytest_cache/v/cache
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/.pytest_cache/v/cache/nodeids -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/.pytest_cache/v/cache
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/.pytest_cache/v/cache/stepwise -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/.pytest_cache/v/cache
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/.pytest_cache/README.md -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/.pytest_cache
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/.pytest_cache/.gitignore -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/.pytest_cache
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_sqt/build/.pytest_cache/CACHEDIR.TAG -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/.pytest_cache
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__main__.py to __main__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/_codons.py to _codons.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/align.py to align.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/ansicolor.py to ansicolor.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/args.py to args.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/cigar.py to cigar.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/colorspace.py to colorspace.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/compat.py to compat.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/dna.py to dna.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/intervaltree.py to intervaltree.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/math.py to math.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/qualtrim.py to qualtrim.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/reads.py to reads.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/region.py to region.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/utils.py to utils.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io/bam.py to bam.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io/fasta.py to fasta.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io/gtf.py to gtf.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io/sff.py to sff.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/addadapt.py to addadapt.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/align.py to align.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/bam2fastq.py to bam2fastq.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/bameof.py to bameof.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/bamstats.py to bamstats.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/chars.py to chars.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/checkfastqpe.py to checkfastqpe.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/checkvcfref.py to checkvcfref.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/compare_sequences.py to compare_sequences.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/coverage.py to coverage.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/cutvect.py to cutvect.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/fastaextract.py to fastaextract.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/fastagrep.py to fastagrep.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/fastastats.py to fastastats.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/fastxmod.py to fastxmod.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/fixbam64.py to fixbam64.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/histogram.py to histogram.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/mutate.py to mutate.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/qgramfreq.py to qgramfreq.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/qualityguess.py to qualityguess.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/randomseq.py to randomseq.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/readcov.py to readcov.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/readlenhisto.py to readlenhisto.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/samfixn.py to samfixn.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/samsetop.py to samsetop.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/simreads.py to simreads.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/translate.py to translate.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/_version.py to _version.cpython-311.pyc
running install_egg_info
running egg_info
creating sqt.egg-info
writing sqt.egg-info/PKG-INFO
writing dependency_links to sqt.egg-info/dependency_links.txt
writing entry points to sqt.egg-info/entry_points.txt
writing requirements to sqt.egg-info/requires.txt
writing top-level names to sqt.egg-info/top_level.txt
writing manifest file 'sqt.egg-info/SOURCES.txt'
reading manifest file 'sqt.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'sqt.egg-info/SOURCES.txt'
Copying sqt.egg-info to /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt-0.8.0.egg-info
Skipping SOURCES.txt
running install_scripts
Installing sqt script to /<<PKGBUILDDIR>>/debian/python3-sqt/usr/bin
dh_installdocs -a -O--buildsystem=pybuild
install -m0755 -d debian/python3-sqt/usr/share/doc/python3-sqt
install -p -m0644 debian/README.Debian debian/python3-sqt/usr/share/doc/python3-sqt/README.Debian
install -p -m0644 debian/copyright debian/python3-sqt/usr/share/doc/python3-sqt/copyright
dh_installchangelogs -a -O--buildsystem=pybuild
install -m0755 -d debian/python3-sqt/usr/share/doc/python3-sqt
install -p -m0644 debian/.debhelper/generated/python3-sqt/dh_installchangelogs.dch.trimmed debian/python3-sqt/usr/share/doc/python3-sqt/changelog.Debian
dh_installman -a -O--buildsystem=pybuild
install -m0755 -d debian/python3-sqt/usr/share/man/man1/
install -p -m0644 ./debian/sqt.1 debian/python3-sqt/usr/share/man/man1/sqt.1
man-recode --to-code UTF-8 --suffix .dh-new debian/python3-sqt/usr/share/man/man1/sqt.1
mv debian/python3-sqt/usr/share/man/man1/sqt.1.dh-new debian/python3-sqt/usr/share/man/man1/sqt.1
chmod 0644 -- debian/python3-sqt/usr/share/man/man1/sqt.1
dh_python3 -a -O--buildsystem=pybuild
D: dh_python3 dh_python3:179: version: 6.20231204
D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild']
D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=True, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild'])
D: dh_python3 dh_python3:182: supported Python versions: 3.11 (default=3.11)
D: dh_python3 debhelper:183: source=python-sqt, binary packages=['python3-sqt']
D: dh_python3 dh_python3:204: processing package python3-sqt...
D: dh_python3 fs:50: moving files from debian/python3-sqt/usr/lib/python3.11/dist-packages to debian/python3-sqt/usr/lib/python3/dist-packages/
D: dh_python3 fs:258: removing dist-packages/.pytest_cache
D: dh_python3 fs:348: package python3-sqt details = {'requires.txt': {'debian/python3-sqt/usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/requires.txt'}, 'egg-info': {'debian/python3-sqt/usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.11')}, 'ext_no_version': set()}
D: dh_python3 depends:117: generating dependencies for package python3-sqt
D: dh_python3 pydist:173: trying to find dependency for cutadapt (python=None)
D: dh_python3 pydist:207: dependency: module seems to be installed
D: dh_python3 pydist:270: dependency: included in build-deps
D: dh_python3 pydist:173: trying to find dependency for matplotlib (python=None)
D: dh_python3 pydist:207: dependency: module seems to be installed
D: dh_python3 pydist:270: dependency: included in build-deps
D: dh_python3 pydist:173: trying to find dependency for pysam!=0.9.0 (python=None)
D: dh_python3 pydist:207: dependency: module seems to be installed
D: dh_python3 pydist:270: dependency: included in build-deps
D: dh_python3 pydist:173: trying to find dependency for seaborn (python=None)
D: dh_python3 pydist:207: dependency: module seems to be installed
D: dh_python3 pydist:270: dependency: included in build-deps
D: dh_python3 pydist:173: trying to find dependency for xopen (python=None)
D: dh_python3 pydist:207: dependency: module seems to be installed
D: dh_python3 pydist:270: dependency: included in build-deps
D: dh_python3 depends:281: D={'python3-matplotlib', 'python3-seaborn', 'python3-xopen', 'python3:any', 'python3 (<< 3.12)', 'python3-pysam', 'python3 (>= 3.11~)', 'python3-cutadapt'}; R=[]; S=[]; E=[], B=[]; RT=[]
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
cd debian/python3-sqt
chmod a-x usr/share/doc/python3-sqt/changelog.Debian usr/share/man/man1/sqt.1
gzip -9nf usr/share/doc/python3-sqt/changelog.Debian usr/share/man/man1/sqt.1
cd '/<<PKGBUILDDIR>>'
dh_fixperms -a -O--buildsystem=pybuild
find debian/python3-sqt ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/python3-sqt/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-sqt/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-sqt/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/python3-sqt/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-sqt -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-sqt/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
find debian/python3-sqt/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dwz -- debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-311-arm-linux-gnueabihf.so
dh_strip -a -O--buildsystem=pybuild
install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/f3
objcopy --only-keep-debug --compress-debug-sections debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-311-arm-linux-gnueabihf.so debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/f3/7b35dc7e3437c6e51d9a8ebd9c19221c1fc020.debug
chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/f3/7b35dc7e3437c6e51d9a8ebd9c19221c1fc020.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-311-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/f3/7b35dc7e3437c6e51d9a8ebd9c19221c1fc020.debug debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-311-arm-linux-gnueabihf.so
install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/usr/share/doc
ln -s python3-sqt debian/.debhelper/python3-sqt/dbgsym-root/usr/share/doc/python3-sqt-dbgsym
install -m0755 -d debian/.debhelper/python3-sqt
dh_makeshlibs -a -O--buildsystem=pybuild
rm -f debian/python3-sqt/DEBIAN/shlibs
dh_shlibdeps -a -O--buildsystem=pybuild
install -m0755 -d debian/python3-sqt/DEBIAN
dpkg-shlibdeps -Tdebian/python3-sqt.substvars debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-311-arm-linux-gnueabihf.so
dh_installdeb -a -O--buildsystem=pybuild
install -m0755 -d debian/python3-sqt/DEBIAN
printf '#!/bin/sh\nset -e\n' > debian/python3-sqt/DEBIAN/postinst
cat debian/python3-sqt.postinst.debhelper >> debian/python3-sqt/DEBIAN/postinst
chmod 0755 -- debian/python3-sqt/DEBIAN/postinst
printf '#!/bin/sh\nset -e\n' > debian/python3-sqt/DEBIAN/prerm
cat debian/python3-sqt.prerm.debhelper >> debian/python3-sqt/DEBIAN/prerm
chmod 0755 -- debian/python3-sqt/DEBIAN/prerm
dh_gencontrol -a -O--buildsystem=pybuild
install -m0755 -d debian/python3-sqt/DEBIAN
echo misc:Depends= >> debian/python3-sqt.substvars
echo misc:Pre-Depends= >> debian/python3-sqt.substvars
install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN
dpkg-gencontrol -ppython3-sqt -ldebian/changelog -Tdebian/python3-sqt.substvars -Pdebian/.debhelper/python3-sqt/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=python3-sqt-dbgsym "-DDepends=python3-sqt (= \${binary:Version})" "-DDescription=debug symbols for python3-sqt" -DBuild-Ids=f37b35dc7e3437c6e51d9a8ebd9c19221c1fc020 -DSection=debug -UMulti-Arch -UReplaces -UBreaks
chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN/control
dpkg-gencontrol -ppython3-sqt -ldebian/changelog -Tdebian/python3-sqt.substvars -Pdebian/python3-sqt
chmod 0644 -- debian/python3-sqt/DEBIAN/control
dh_md5sums -a -O--buildsystem=pybuild
install -m0755 -d debian/python3-sqt/DEBIAN
cd debian/python3-sqt >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/python3-sqt/DEBIAN/md5sums
install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN
cd debian/.debhelper/python3-sqt/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN/md5sums
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb --root-owner-group --build debian/python3-sqt ..
dpkg-deb --root-owner-group --build debian/.debhelper/python3-sqt/dbgsym-root ..
dpkg-deb: building package 'python3-sqt-dbgsym' in '../python3-sqt-dbgsym_0.8.0-8_armhf.deb'.
dpkg-deb: building package 'python3-sqt' in '../python3-sqt_0.8.0-8_armhf.deb'.
dpkg-genbuildinfo --build=any -O../python-sqt_0.8.0-8_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi5 test autobuilder <root@raspbian.org> -O../python-sqt_0.8.0-8_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-source: info: using options from python-sqt-0.8.0/debian/source/options: --extend-diff-ignore=sqt/_version.py
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-12-09T06:37:13Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-sqt_0.8.0-8_armhf.changes:
---------------------------------
Format: 1.8
Date: Tue, 05 Dec 2023 21:43:36 +0700
Source: python-sqt
Binary: python3-sqt python3-sqt-dbgsym
Architecture: armhf
Version: 0.8.0-8
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian pi5 test autobuilder <root@raspbian.org>
Changed-By: Lance Lin <lq27267@gmail.com>
Description:
python3-sqt - SeQuencing Tools for biological DNA/RNA high-throughput data
Closes: 1049145
Changes:
python-sqt (0.8.0-8) unstable; urgency=medium
.
* Team upload.
* Packaging update
* Standards-Version: 4.6.2 (routine-update)
* Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
* d/source/options: Remove .egg-info/ exclude-diff-ignore and add
sqt/_version.py (Closes: #1049145)
* d/control: Replace autopkgtest-pkg-python with autopkgtest-pkg-pybuild
* d/rules: Add hardening option
Checksums-Sha1:
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Files:
40b538c49787e369024591e4a9d2f963 9091 science optional python-sqt_0.8.0-8_armhf.buildinfo
e630d5a97d4ece81fd168f2631bfdc5f 323912 debug optional python3-sqt-dbgsym_0.8.0-8_armhf.deb
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: python-sqt
Binary: python3-sqt python3-sqt-dbgsym
Architecture: armhf
Version: 0.8.0-8
Checksums-Md5:
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sat, 09 Dec 2023 06:37:12 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.71-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-14),
autotools-dev (= 20220109.1),
base-files (= 13+rpi1),
base-passwd (= 3.6.2),
bash (= 5.2.15-2),
binutils (= 2.41-6+rpi1),
binutils-arm-linux-gnueabihf (= 2.41-6+rpi1),
binutils-common (= 2.41-6+rpi1),
blt (= 2.5.3+dfsg-4.1),
bsdextrautils (= 2.39.2-6),
bsdutils (= 1:2.39.2-6),
build-essential (= 12.9),
bzip2 (= 1.0.8-5+b2),
coreutils (= 9.1-1),
cpp (= 4:13.2.0-1+rpi1),
cpp-12 (= 12.3.0-10+rpi1),
cpp-13 (= 13.2.0-7+rpi1),
cython3 (= 0.29.36-3),
dash (= 0.5.12-6),
debconf (= 1.5.82),
debhelper (= 13.11.8),
debianutils (= 5.14),
dh-autoreconf (= 20),
dh-python (= 6.20231204),
dh-strip-nondeterminism (= 1.13.1-1),
diffutils (= 1:3.10-1),
dpkg (= 1.22.1+rpi1),
dpkg-dev (= 1.22.1+rpi1),
dwz (= 0.15-1),
file (= 1:5.45-2),
findutils (= 4.9.0-5),
fontconfig-config (= 2.14.2-6),
fonts-dejavu-core (= 2.37-8),
fonts-dejavu-mono (= 2.37-8),
fonts-lyx (= 2.3.7-1),
g++ (= 4:13.2.0-1+rpi1),
g++-13 (= 13.2.0-7+rpi1),
gcc (= 4:13.2.0-1+rpi1),
gcc-12 (= 12.3.0-10+rpi1),
gcc-12-base (= 12.3.0-10+rpi1),
gcc-13 (= 13.2.0-7+rpi1),
gcc-13-base (= 13.2.0-7+rpi1),
gettext (= 0.21-14),
gettext-base (= 0.21-14),
grep (= 3.11-3),
groff-base (= 1.23.0-3),
gzip (= 1.12-1),
hostname (= 3.23+nmu1),
init-system-helpers (= 1.65.2),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.1-3),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 13.2.0-7+rpi1),
libatomic1 (= 13.2.0-7+rpi1),
libattr1 (= 1:2.5.1-4),
libaudit-common (= 1:3.1.1-1),
libaudit1 (= 1:3.1.1-1),
libbinutils (= 2.41-6+rpi1),
libblas3 (= 3.11.0-2),
libblkid1 (= 2.39.2-6),
libbrotli1 (= 1.1.0-2),
libbsd0 (= 0.11.7-4),
libbz2-1.0 (= 1.0.8-5+b2),
libc-bin (= 2.37-12+rpi2),
libc-dev-bin (= 2.37-12+rpi2),
libc6 (= 2.37-12+rpi2),
libc6-dev (= 2.37-12+rpi2),
libcap-ng0 (= 0.8.3-1+b1),
libcap2 (= 1:2.66-4),
libcc1-0 (= 13.2.0-7+rpi1),
libcom-err2 (= 1.47.0-2),
libcrypt-dev (= 1:4.4.36-2),
libcrypt1 (= 1:4.4.36-2),
libctf-nobfd0 (= 2.41-6+rpi1),
libctf0 (= 2.41-6+rpi1),
libcurl3-gnutls (= 8.4.0-2+rpi1),
libdb5.3 (= 5.3.28+dfsg2-2),
libdebconfclient0 (= 0.271),
libdebhelper-perl (= 13.11.8),
libdeflate0 (= 1.18-1),
libdpkg-perl (= 1.22.1+rpi1),
libelf1 (= 0.188-2.1+rpi1),
libexpat1 (= 2.5.0-2),
libexpat1-dev (= 2.5.0-2),
libffi8 (= 3.4.4-1),
libfile-stripnondeterminism-perl (= 1.13.1-1),
libfontconfig1 (= 2.14.2-6),
libfreetype6 (= 2.13.2+dfsg-1),
libfribidi0 (= 1.0.13-3),
libgcc-12-dev (= 12.3.0-10+rpi1),
libgcc-13-dev (= 13.2.0-7+rpi1),
libgcc-s1 (= 13.2.0-7+rpi1),
libgcrypt20 (= 1.10.2-3),
libgdbm-compat4 (= 1.23-3),
libgdbm6 (= 1.23-3),
libgfortran5 (= 13.2.0-7+rpi1),
libglib2.0-0 (= 2.78.1-4),
libgmp10 (= 2:6.3.0+dfsg-2),
libgnutls30 (= 3.8.1-4),
libgomp1 (= 13.2.0-7+rpi1),
libgpg-error0 (= 1.47-2),
libgraphite2-3 (= 1.3.14-1),
libgssapi-krb5-2 (= 1.20.1-4),
libharfbuzz0b (= 8.0.1-1),
libhogweed6 (= 3.9.1-2),
libhts3 (= 1.18+ds-1),
libhtscodecs2 (= 1.5.2-1),
libicu72 (= 72.1-4),
libidn2-0 (= 2.3.4-1),
libimagequant0 (= 2.18.0-1),
libisl23 (= 0.26-3),
libjansson4 (= 2.14-2),
libjbig0 (= 2.1-6.1),
libjpeg62-turbo (= 1:2.1.5-2),
libjs-jquery (= 3.6.1+dfsg+~3.5.14-1),
libjs-jquery-ui (= 1.13.2+dfsg-1),
libjs-sphinxdoc (= 7.2.6-2),
libjs-underscore (= 1.13.4~dfsg+~1.11.4-3),
libk5crypto3 (= 1.20.1-4),
libkeyutils1 (= 1.6.3-2),
libkrb5-3 (= 1.20.1-4),
libkrb5support0 (= 1.20.1-4),
liblapack3 (= 3.11.0-2),
liblbfgsb0 (= 3.0+dfsg.4-1),
liblcms2-2 (= 2.14-2),
libldap-2.5-0 (= 2.5.13+dfsg-5+rpi1),
liblerc4 (= 4.0.0+ds-4),
liblz4-1 (= 1.9.4-1+rpi1+b1),
liblzma5 (= 5.4.4-0.1),
libmagic-mgc (= 1:5.45-2),
libmagic1 (= 1:5.45-2),
libmd0 (= 1.1.0-1),
libmount1 (= 2.39.2-6),
libmpc3 (= 1.3.1-1),
libmpfr6 (= 4.2.1-1),
libncursesw6 (= 6.4+20231016-1),
libnettle8 (= 3.9.1-2),
libnghttp2-14 (= 1.58.0-1),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libopenjp2-7 (= 2.5.0-2),
libp11-kit0 (= 0.25.0-5),
libpam-modules (= 1.5.2-9.1),
libpam-modules-bin (= 1.5.2-9.1),
libpam-runtime (= 1.5.2-9.1),
libpam0g (= 1.5.2-9.1),
libpcre2-8-0 (= 10.42-4),
libperl5.36 (= 5.36.0-9),
libpipeline1 (= 1.5.7-1),
libpng16-16 (= 1.6.40-2),
libpsl5 (= 0.21.2-1+b1),
libpython3-all-dev (= 3.11.4-5),
libpython3-dev (= 3.11.4-5),
libpython3-stdlib (= 3.11.4-5),
libpython3.11 (= 3.11.6-3),
libpython3.11-dev (= 3.11.6-3),
libpython3.11-minimal (= 3.11.6-3),
libpython3.11-stdlib (= 3.11.6-3),
libqhull-r8.0 (= 2020.2-6),
libraqm0 (= 0.10.1-1),
libreadline8 (= 8.2-1.3),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
libsasl2-2 (= 2.1.28+dfsg1-3),
libsasl2-modules-db (= 2.1.28+dfsg1-3),
libseccomp2 (= 2.5.4-1+rpi1+b1),
libselinux1 (= 3.5-1),
libsframe1 (= 2.41-6+rpi1),
libsharpyuv0 (= 1.3.2-0.3),
libsmartcols1 (= 2.39.2-6),
libsqlite3-0 (= 3.43.2-1),
libssh2-1 (= 1.11.0-3),
libssl3 (= 3.0.11-1),
libstdc++-13-dev (= 13.2.0-7+rpi1),
libstdc++6 (= 13.2.0-7+rpi1),
libsub-override-perl (= 0.09-4),
libsystemd0 (= 254.5-1+rpi1),
libtasn1-6 (= 4.19.0-3),
libtcl8.6 (= 8.6.13+dfsg-2),
libtiff6 (= 4.5.1+git230720-1),
libtinfo6 (= 6.4+20231016-1),
libtirpc-common (= 1.3.3+ds-1),
libtirpc-dev (= 1.3.3+ds-1),
libtirpc3 (= 1.3.3+ds-1),
libtk8.6 (= 8.6.13-2),
libtool (= 2.4.7-7),
libubsan1 (= 13.2.0-7+rpi1),
libuchardet0 (= 0.0.8-1),
libudev1 (= 254.5-1+rpi1),
libunistring5 (= 1.1-2),
libuuid1 (= 2.39.2-6),
libwebp7 (= 1.3.2-0.3),
libwebpdemux2 (= 1.3.2-0.3),
libwebpmux3 (= 1.3.2-0.3),
libx11-6 (= 2:1.8.7-1),
libx11-data (= 2:1.8.7-1),
libxau6 (= 1:1.0.9-1),
libxcb1 (= 1.15-1),
libxdmcp6 (= 1:1.1.2-3),
libxext6 (= 2:1.3.4-1),
libxft2 (= 2.3.6-1),
libxml2 (= 2.9.14+dfsg-1.3),
libxrender1 (= 1:0.9.10-1.1),
libxslt1.1 (= 1.1.35-1),
libxss1 (= 1:1.2.3-1),
libzstd1 (= 1.5.5+dfsg2-2),
linux-libc-dev (= 6.5.6-1+rpi1),
login (= 1:4.13+dfsg1-3),
lsb-base (= 11.6+rpi1),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.12.0-1),
mawk (= 1.3.4.20230808-1),
media-types (= 10.1.0),
ncurses-base (= 6.4+20231016-1),
ncurses-bin (= 6.4+20231016-1),
patch (= 2.7.6-7),
perl (= 5.36.0-9),
perl-base (= 5.36.0-9),
perl-modules-5.36 (= 5.36.0-9),
pigz (= 2.8-1),
po-debconf (= 1.0.21+nmu1),
python-matplotlib-data (= 3.6.3-1),
python3 (= 3.11.4-5),
python3-all (= 3.11.4-5),
python3-all-dev (= 3.11.4-5),
python3-appdirs (= 1.4.4-4),
python3-attr (= 23.1.0-2),
python3-brotli (= 1.1.0-2),
python3-contourpy (= 1.0.7-1),
python3-cutadapt (= 4.4-1),
python3-cycler (= 0.11.0-1),
python3-dateutil (= 2.8.2-3),
python3-decorator (= 5.1.1-5),
python3-dev (= 3.11.4-5),
python3-distutils (= 3.11.5-1),
python3-dnaio (= 1.0.1-1),
python3-fonttools (= 4.46.0-1),
python3-fs (= 2.4.16-2),
python3-iniconfig (= 1.1.1-2),
python3-kiwisolver (= 1.4.4-1),
python3-lib2to3 (= 3.11.5-1),
python3-lxml (= 4.9.3-1),
python3-lz4 (= 4.0.2+dfsg-1+b1),
python3-matplotlib (= 3.6.3-1),
python3-minimal (= 3.11.4-5),
python3-mpmath (= 1.2.1-2),
python3-numpy (= 1:1.24.2-1),
python3-packaging (= 23.2-1),
python3-pandas (= 1.5.3+dfsg-6),
python3-pandas-lib (= 1.5.3+dfsg-6),
python3-pil (= 10.0.0-1),
python3-pil.imagetk (= 10.0.0-1),
python3-pkg-resources (= 68.1.2-2),
python3-pluggy (= 1.3.0-1),
python3-pyparsing (= 3.1.1-1),
python3-pysam (= 0.22.0+ds-1+rpi1),
python3-pytest (= 7.4.3-1),
python3-scipy (= 1.10.1-5+rpi1),
python3-seaborn (= 0.12.2-1),
python3-setuptools (= 68.1.2-2),
python3-six (= 1.16.0-4),
python3-sympy (= 1.12-6),
python3-tk (= 3.11.5-1),
python3-tz (= 2023.3.post1-1),
python3-ufolib2 (= 0.16.0+dfsg1-1),
python3-xopen (= 1.7.0-2),
python3.11 (= 3.11.6-3),
python3.11-dev (= 3.11.6-3),
python3.11-minimal (= 3.11.6-3),
readline-common (= 8.2-1.3),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-1),
sensible-utils (= 0.0.20),
sysvinit-utils (= 3.08-3),
tar (= 1.34+dfsg-1.2),
tk8.6-blt2.5 (= 2.5.3+dfsg-4.1),
tzdata (= 2023c-10),
unicode-data (= 15.1.0-1),
usr-is-merged (= 37),
util-linux (= 2.39.2-6),
x11-common (= 1:7.7+23),
xz-utils (= 5.4.4-0.1),
zlib1g (= 1:1.2.13.dfsg-3),
zlib1g-dev (= 1:1.2.13.dfsg-3)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
LC_COLLATE="C.UTF-8"
SOURCE_DATE_EPOCH="1701787416"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-sqt-dbgsym_0.8.0-8_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 323912 bytes: control archive=536 bytes.
385 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: python3-sqt-dbgsym
Source: python-sqt
Version: 0.8.0-8
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 354
Depends: python3-sqt (= 0.8.0-8)
Section: debug
Priority: optional
Description: debug symbols for python3-sqt
Build-Ids: f37b35dc7e3437c6e51d9a8ebd9c19221c1fc020
drwxr-xr-x root/root 0 2023-12-05 14:43 ./
drwxr-xr-x root/root 0 2023-12-05 14:43 ./usr/
drwxr-xr-x root/root 0 2023-12-05 14:43 ./usr/lib/
drwxr-xr-x root/root 0 2023-12-05 14:43 ./usr/lib/debug/
drwxr-xr-x root/root 0 2023-12-05 14:43 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2023-12-05 14:43 ./usr/lib/debug/.build-id/f3/
-rw-r--r-- root/root 351664 2023-12-05 14:43 ./usr/lib/debug/.build-id/f3/7b35dc7e3437c6e51d9a8ebd9c19221c1fc020.debug
drwxr-xr-x root/root 0 2023-12-05 14:43 ./usr/share/
drwxr-xr-x root/root 0 2023-12-05 14:43 ./usr/share/doc/
lrwxrwxrwx root/root 0 2023-12-05 14:43 ./usr/share/doc/python3-sqt-dbgsym -> python3-sqt
python3-sqt_0.8.0-8_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 107960 bytes: control archive=3320 bytes.
2214 bytes, 46 lines control
5182 bytes, 61 lines md5sums
269 bytes, 12 lines * postinst #!/bin/sh
382 bytes, 12 lines * prerm #!/bin/sh
Package: python3-sqt
Source: python-sqt
Version: 0.8.0-8
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 365
Depends: libc6 (>= 2.4), python3 (<< 3.12), python3 (>= 3.11~), python3-cutadapt, python3-matplotlib, python3-pysam, python3-seaborn, python3-xopen, python3:any
Recommends: fonts-noto-color-emoji
Section: python
Priority: optional
Homepage: https://bitbucket.org/marcelm/sqt
Description: SeQuencing Tools for biological DNA/RNA high-throughput data
sqt is a collection of command-line tools for working with
high-throughput sequencing data. Conceptionally not fixed to use any
particular language, many sqt subcommands are currently implemented
in Python. For them, a Python package is available with functions for
reading and writing FASTA/FASTQ files, computing alignments, quality
trimming, etc.
.
The following tools are offered:
* sqt-coverage -- Compute per-reference statistics such as coverage
and GC content
* sqt-fastqmod -- FASTQ modifications: shorten, subset, reverse
complement, quality trimming.
* sqt-fastastats -- Compute N50, min/max length, GC content etc. of
a FASTA file
* sqt-qualityguess -- Guess quality encoding of one or more FASTA files.
* sqt-globalalign -- Compute a global or semiglobal alignment of two strings.
* sqt-chars -- Count length of the first word given on the command line.
* sqt-sam-cscq -- Add the CS and CQ tags to a SAM file with colorspace reads.
* sqt-fastamutate -- Add substitutions and indels to sequences in a
FASTA file.
* sqt-fastaextract -- Efficiently extract one or more regions from an
indexed FASTA file.
* sqt-translate -- Replace characters in FASTA files (like the 'tr'
command).
* sqt-sam-fixn -- Replace all non-ACGT characters within reads in a
SAM file.
* sqt-sam-insertsize -- Mean and standard deviation of paired-end
insert sizes.
* sqt-sam-set-op -- Set operations (union, intersection, ...) on
SAM/BAM files.
* sqt-bam-eof -- Check for the End-Of-File marker in compressed
BAM files.
* sqt-checkfastqpe -- Check whether two FASTQ files contain correctly
paired paired-end data.
drwxr-xr-x root/root 0 2023-12-05 14:43 ./
drwxr-xr-x root/root 0 2023-12-05 14:43 ./usr/
drwxr-xr-x root/root 0 2023-12-05 14:43 ./usr/bin/
-rwxr-xr-x root/root 938 2023-12-05 14:43 ./usr/bin/sqt
drwxr-xr-x root/root 0 2023-12-05 14:43 ./usr/lib/
drwxr-xr-x root/root 0 2023-12-05 14:43 ./usr/lib/python3/
drwxr-xr-x root/root 0 2023-12-05 14:43 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2023-12-05 14:43 ./usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/
-rw-r--r-- root/root 579 2023-12-05 14:43 ./usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2023-12-05 14:43 ./usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/dependency_links.txt
-rw-r--r-- root/root 42 2023-12-05 14:43 ./usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/entry_points.txt
-rw-r--r-- root/root 0 2023-12-05 14:43 ./usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/requires.txt
-rw-r--r-- root/root 4 2023-12-05 14:43 ./usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/top_level.txt
drwxr-xr-x root/root 0 2023-12-05 14:43 ./usr/lib/python3/dist-packages/sqt/
-rw-r--r-- root/root 360 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/__init__.py
-rw-r--r-- root/root 1401 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/__main__.py
-rw-r--r-- root/root 855 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/_codons.py
-rw-r--r-- root/root 156888 2023-12-05 14:43 ./usr/lib/python3/dist-packages/sqt/_helpers.cpython-311-arm-linux-gnueabihf.so
-rw-r--r-- root/root 471 2023-12-05 14:43 ./usr/lib/python3/dist-packages/sqt/_version.py
-rw-r--r-- root/root 6070 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/align.py
-rw-r--r-- root/root 1980 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/ansicolor.py
-rw-r--r-- root/root 516 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/args.py
-rw-r--r-- root/root 11249 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/cigar.py
-rw-r--r-- root/root 1812 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/colorspace.py
drwxr-xr-x root/root 0 2023-12-05 14:43 ./usr/lib/python3/dist-packages/sqt/commands/
-rw-r--r-- root/root 0 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/__init__.py
-rw-r--r-- root/root 2423 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/addadapt.py
-rw-r--r-- root/root 3535 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/align.py
-rw-r--r-- root/root 4560 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/bam2fastq.py
-rw-r--r-- root/root 1389 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/bameof.py
-rw-r--r-- root/root 7998 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/bamstats.py
-rw-r--r-- root/root 444 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/chars.py
-rw-r--r-- root/root 2183 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/checkfastqpe.py
-rw-r--r-- root/root 1261 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/checkvcfref.py
-rw-r--r-- root/root 4808 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/compare_sequences.py
-rw-r--r-- root/root 3411 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/coverage.py
-rw-r--r-- root/root 4408 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/cutvect.py
-rw-r--r-- root/root 3170 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/fastaextract.py
-rw-r--r-- root/root 2277 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/fastagrep.py
-rw-r--r-- root/root 6023 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/fastastats.py
-rw-r--r-- root/root 9378 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/fastxmod.py
-rw-r--r-- root/root 871 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/fixbam64.py
-rw-r--r-- root/root 1399 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/histogram.py
-rw-r--r-- root/root 1229 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/mutate.py
-rw-r--r-- root/root 1055 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/qgramfreq.py
-rw-r--r-- root/root 1516 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/qualityguess.py
-rw-r--r-- root/root 787 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/randomseq.py
-rw-r--r-- root/root 1830 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/readcov.py
-rw-r--r-- root/root 3897 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/readlenhisto.py
-rw-r--r-- root/root 845 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/samfixn.py
-rw-r--r-- root/root 4892 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/samsetop.py
-rw-r--r-- root/root 2002 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/simreads.py
-rw-r--r-- root/root 1490 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/translate.py
-rw-r--r-- root/root 554 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/compat.py
-rw-r--r-- root/root 3993 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/dna.py
-rw-r--r-- root/root 3914 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/intervaltree.py
drwxr-xr-x root/root 0 2023-12-05 14:43 ./usr/lib/python3/dist-packages/sqt/io/
-rw-r--r-- root/root 0 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/io/__init__.py
-rw-r--r-- root/root 6573 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/io/bam.py
-rw-r--r-- root/root 25513 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/io/fasta.py
-rw-r--r-- root/root 1818 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/io/gtf.py
-rw-r--r-- root/root 10121 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/io/sff.py
-rw-r--r-- root/root 1550 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/math.py
-rw-r--r-- root/root 494 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/qualtrim.py
-rw-r--r-- root/root 4190 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/reads.py
-rw-r--r-- root/root 2524 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/region.py
-rw-r--r-- root/root 606 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/utils.py
drwxr-xr-x root/root 0 2023-12-05 14:43 ./usr/share/
drwxr-xr-x root/root 0 2023-12-05 14:43 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-12-05 14:43 ./usr/share/doc/python3-sqt/
-rw-r--r-- root/root 204 2023-12-05 14:43 ./usr/share/doc/python3-sqt/README.Debian
-rw-r--r-- root/root 914 2023-12-05 14:43 ./usr/share/doc/python3-sqt/changelog.Debian.gz
-rw-r--r-- root/root 1651 2023-12-05 14:43 ./usr/share/doc/python3-sqt/copyright
drwxr-xr-x root/root 0 2023-12-05 14:43 ./usr/share/man/
drwxr-xr-x root/root 0 2023-12-05 14:43 ./usr/share/man/man1/
-rw-r--r-- root/root 887 2023-12-05 14:43 ./usr/share/man/man1/sqt.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 5684
Build-Time: 23
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 168
Job: python-sqt_0.8.0-8
Machine Architecture: arm64
Package: python-sqt
Package-Time: 200
Source-Version: 0.8.0-8
Space: 5684
Status: successful
Version: 0.8.0-8
--------------------------------------------------------------------------------
Finished at 2023-12-09T06:37:13Z
Build needed 00:03:20, 5684k disk space