python-sqt →
0.8.0-5 →
armhf → 2021-10-20 08:21:49
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testbuildd
+==============================================================================+
| python-sqt 0.8.0-5 (armhf) Wed, 20 Oct 2021 07:59:41 +0000 |
+==============================================================================+
Package: python-sqt
Version: 0.8.0-5
Source Version: 0.8.0-5
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-f499dd66-0b36-406c-a303-8f033aa5fd13' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.9 MB in 29s (899 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-sqt' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-sqt.git
Please use:
git clone https://salsa.debian.org/med-team/python-sqt.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 124 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main python-sqt 0.8.0-5 (dsc) [2187 B]
Get:2 http://172.17.0.1/private bookworm-staging/main python-sqt 0.8.0-5 (tar) [116 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main python-sqt 0.8.0-5 (diff) [5164 B]
Fetched 124 kB in 0s (511 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-sqt-i4V8pa/python-sqt-0.8.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-sqt-i4V8pa' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-ma8BYv/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-ma8BYv/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-ma8BYv/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ma8BYv/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ma8BYv/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ma8BYv/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ma8BYv/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ma8BYv/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2908 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 37 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ma8BYv/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.4 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12484 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, cython3, python3-nose, python3-cutadapt, python3-pysam, python3-seaborn, python3-xopen
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, cython3, python3-nose, python3-cutadapt, python3-pysam, python3-seaborn, python3-xopen
dpkg-deb: building package 'sbuild-build-depends-python-sqt-dummy' in '/<<BUILDDIR>>/resolver-ma8BYv/apt_archive/sbuild-build-depends-python-sqt-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-sqt-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ma8BYv/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ma8BYv/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ma8BYv/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ma8BYv/apt_archive ./ Sources [562 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ma8BYv/apt_archive ./ Packages [630 B]
Fetched 2525 B in 1s (3441 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install python-sqt build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev blt bsdextrautils cython3
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
fontconfig-config fonts-lyx gcc-11-base gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libasan6 libatomic1 libblas3 libbrotli1
libbsd0 libcc1-0 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1
libexpat1 libexpat1-dev libffi8 libfile-stripnondeterminism-perl
libfontconfig1 libfreetype6 libgcc-s1 libgfortran5 libgomp1 libhts3
libhtscodecs2 libicu67 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery
libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0
liblcms2-2 libmagic-mgc libmagic1 libmd0 libmpdec3 libnghttp2-14
libpipeline1 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
libpython3.9-stdlib librtmp1 libsigsegv2 libssh2-1 libstdc++6
libsub-override-perl libtcl8.6 libtiff5 libtk8.6 libtool libubsan1
libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 m4 mailcap
man-db media-types mime-support pigz po-debconf python-matplotlib-data
python3 python3-all python3-all-dev python3-cutadapt python3-cycler
python3-dateutil python3-decorator python3-dev python3-distutils
python3-dnaio python3-kiwisolver python3-lib2to3 python3-matplotlib
python3-minimal python3-nose python3-numpy python3-pandas python3-pandas-lib
python3-pil python3-pkg-resources python3-pyparsing python3-pysam
python3-scipy python3-seaborn python3-setuptools python3-six python3-tk
python3-tz python3-xopen python3.9 python3.9-dev python3.9-minimal
sensible-utils tk8.6-blt2.5 ttf-bitstream-vera ucf x11-common zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc blt-demo cython-doc dh-make flit
python3-toml gettext-doc libasprintf-dev libgettextpo-dev groff
libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-venv python-cycler-doc dvipng ffmpeg
ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common
python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo
python3-gobject python3-pyqt5 python3-sip python3-tornado
texlive-extra-utils texlive-latex-extra ttf-staypuft python-nose-doc
gfortran python-numpy-doc python3-numpy-dbg python3-pytest python-pandas-doc
python3-statsmodels python-pil-doc python3-pil-dbg python-pyparsing-doc
python-scipy-doc python-setuptools-doc tix python3-tk-dbg python3.9-venv
python3.9-doc binfmt-support
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl javascript-common
publicsuffix libltdl-dev libmail-sendmail-perl python3-bottleneck
python3-numexpr python3-odf python3-openpyxl python3-xlwt python3-bs4
python3-html5lib python3-lxml python3-tables python3-jinja2 python3-olefile
python3-patsy
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev blt bsdextrautils cython3
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
fontconfig-config fonts-lyx gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcurl3-gnutls
libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev libffi8
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran5
libhts3 libhtscodecs2 libicu67 libimagequant0 libjbig0 libjpeg62-turbo
libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3
liblbfgsb0 liblcms2-2 libmagic-mgc libmagic1 libmd0 libmpdec3 libnghttp2-14
libpipeline1 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
libpython3.9-stdlib librtmp1 libsigsegv2 libssh2-1 libsub-override-perl
libtcl8.6 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwebpdemux2
libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxrender1 libxss1 m4 mailcap man-db media-types mime-support pigz
po-debconf python-matplotlib-data python3 python3-all python3-all-dev
python3-cutadapt python3-cycler python3-dateutil python3-decorator
python3-dev python3-distutils python3-dnaio python3-kiwisolver
python3-lib2to3 python3-matplotlib python3-minimal python3-nose
python3-numpy python3-pandas python3-pandas-lib python3-pil
python3-pkg-resources python3-pyparsing python3-pysam python3-scipy
python3-seaborn python3-setuptools python3-six python3-tk python3-tz
python3-xopen python3.9 python3.9-dev python3.9-minimal
sbuild-build-depends-python-sqt-dummy sensible-utils tk8.6-blt2.5
ttf-bitstream-vera ucf x11-common zlib1g-dev
The following packages will be upgraded:
gcc-11-base libasan6 libatomic1 libcc1-0 libgcc-s1 libgomp1 libstdc++6
libubsan1
8 upgraded, 131 newly installed, 0 to remove and 29 not upgraded.
Need to get 76.1 MB of archives.
After this operation, 279 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ma8BYv/apt_archive ./ sbuild-build-depends-python-sqt-dummy 0.invalid.0 [912 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-3 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libasan6 armhf 11.2.0-9+rpi1 [1947 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf libubsan1 armhf 11.2.0-9+rpi1 [798 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libgomp1 armhf 11.2.0-9+rpi1 [88.0 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf gcc-11-base armhf 11.2.0-9+rpi1 [206 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libgcc-s1 armhf 11.2.0-9+rpi1 [36.2 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libcc1-0 armhf 11.2.0-9+rpi1 [38.0 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libatomic1 armhf 11.2.0-9+rpi1 [8184 B]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf libstdc++6 armhf 11.2.0-9+rpi1 [466 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf pigz armhf 2.6-1 [50.9 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.7-4+rpi1 [794 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-2 [80.3 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.7-4+rpi1 [1632 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf media-types all 4.0.0 [30.3 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf mailcap all 3.70 [31.8 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libffi8 armhf 3.4.2-3 [21.3 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.7-4+rpi1 [1618 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf python3.9 armhf 3.9.7-4+rpi1 [480 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf python3 armhf 3.9.2-3 [37.9 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.4-2 [819 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.11+dfsg-1 [894 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [353 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf ttf-bitstream-vera all 1.10-8.1 [223 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.11.1-1 [681 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [477 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf cython3 armhf 0.29.21-3+b1 [1234 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.7-1 [79.4 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf python3-distutils all 3.9.7-1 [146 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf dh-python all 5.20211016.1 [103 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf fonts-lyx all 2.3.6-1 [205 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf libblas3 armhf 3.10.0-1 [108 kB]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:85 http://172.17.0.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:86 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:87 http://172.17.0.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:88 http://172.17.0.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.74.0-1.3 [301 kB]
Get:89 http://172.17.0.1/private bookworm-staging/main armhf libdeflate0 armhf 1.8-1 [44.1 kB]
Get:90 http://172.17.0.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.1-2 [135 kB]
Get:91 http://172.17.0.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-9+rpi1 [235 kB]
Get:92 http://172.17.0.1/private bookworm-staging/main armhf libhtscodecs2 armhf 1.1.1-3 [49.8 kB]
Get:93 http://172.17.0.1/private bookworm-staging/main armhf libhts3 armhf 1.13+ds-2 [339 kB]
Get:94 http://172.17.0.1/private bookworm-staging/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB]
Get:95 http://172.17.0.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:96 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [122 kB]
Get:97 http://172.17.0.1/private bookworm-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB]
Get:98 http://172.17.0.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB]
Get:99 http://172.17.0.1/private bookworm-staging/main armhf libjs-underscore all 1.9.1~dfsg-4 [100 kB]
Get:100 http://172.17.0.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.2.0-4 [137 kB]
Get:101 http://172.17.0.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.0-1 [1594 kB]
Get:102 http://172.17.0.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-9 [24.6 kB]
Get:103 http://172.17.0.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.12~rc1-2 [121 kB]
Get:104 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.7-4+rpi1 [1416 kB]
Get:105 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:106 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-dev armhf 3.9.7-4+rpi1 [3060 kB]
Get:107 http://172.17.0.1/private bookworm-staging/main armhf libpython3-dev armhf 3.9.2-3 [21.7 kB]
Get:108 http://172.17.0.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.9.2-3 [1068 B]
Get:109 http://172.17.0.1/private bookworm-staging/main armhf libwebp6 armhf 0.6.1-2.1 [225 kB]
Get:110 http://172.17.0.1/private bookworm-staging/main armhf libtiff5 armhf 4.3.0-2 [272 kB]
Get:111 http://172.17.0.1/private bookworm-staging/main armhf libwebpdemux2 armhf 0.6.1-2.1 [86.8 kB]
Get:112 http://172.17.0.1/private bookworm-staging/main armhf libwebpmux3 armhf 0.6.1-2.1 [94.4 kB]
Get:113 http://172.17.0.1/private bookworm-staging/main armhf python-matplotlib-data all 3.3.4-2 [4154 kB]
Get:114 http://172.17.0.1/private bookworm-staging/main armhf python3-all armhf 3.9.2-3 [1056 B]
Get:115 http://172.17.0.1/private bookworm-staging/main armhf python3.9-dev armhf 3.9.7-4+rpi1 [501 kB]
Get:116 http://172.17.0.1/private bookworm-staging/main armhf python3-dev armhf 3.9.2-3 [24.8 kB]
Get:117 http://172.17.0.1/private bookworm-staging/main armhf python3-all-dev armhf 3.9.2-3 [1064 B]
Get:118 http://172.17.0.1/private bookworm-staging/main armhf python3-pkg-resources all 58.2.0-1 [192 kB]
Get:119 http://172.17.0.1/private bookworm-staging/main armhf python3-xopen all 1.2.0-2 [13.0 kB]
Get:120 http://172.17.0.1/private bookworm-staging/main armhf python3-dnaio armhf 0.6.0-1 [84.9 kB]
Get:121 http://172.17.0.1/private bookworm-staging/main armhf python3-cutadapt armhf 3.5-1 [123 kB]
Get:122 http://172.17.0.1/private bookworm-staging/main armhf python3-six all 1.16.0-2 [17.5 kB]
Get:123 http://172.17.0.1/private bookworm-staging/main armhf python3-cycler all 0.10.0-3 [8084 B]
Get:124 http://172.17.0.1/private bookworm-staging/main armhf python3-dateutil all 2.8.1-6 [79.2 kB]
Get:125 http://172.17.0.1/private bookworm-staging/main armhf python3-decorator all 4.4.2-2 [15.8 kB]
Get:126 http://172.17.0.1/private bookworm-staging/main armhf python3-kiwisolver armhf 1.3.2-1 [45.8 kB]
Get:127 http://172.17.0.1/private bookworm-staging/main armhf python3-pyparsing all 2.4.7-1 [109 kB]
Get:128 http://172.17.0.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.19.5-1 [2930 kB]
Get:129 http://172.17.0.1/private bookworm-staging/main armhf python3-pil armhf 8.1.2+dfsg-0.3 [410 kB]
Get:130 http://172.17.0.1/private bookworm-staging/main armhf python3-matplotlib armhf 3.3.4-2 [6035 kB]
Get:131 http://172.17.0.1/private bookworm-staging/main armhf python3-nose all 1.3.7-7 [133 kB]
Get:132 http://172.17.0.1/private bookworm-staging/main armhf python3-tz all 2021.3-1 [34.9 kB]
Get:133 http://172.17.0.1/private bookworm-staging/main armhf python3-pandas-lib armhf 1.1.5+dfsg-2 [2863 kB]
Get:134 http://172.17.0.1/private bookworm-staging/main armhf python3-pandas all 1.1.5+dfsg-2 [2096 kB]
Get:135 http://172.17.0.1/private bookworm-staging/main armhf python3-pysam armhf 0.17.0+ds-2 [1411 kB]
Get:136 http://172.17.0.1/private bookworm-staging/main armhf python3-scipy armhf 1.6.0-2 [11.1 MB]
Get:137 http://172.17.0.1/private bookworm-staging/main armhf python3-tk armhf 3.9.7-1 [104 kB]
Get:138 http://172.17.0.1/private bookworm-staging/main armhf python3-seaborn all 0.11.2-1 [212 kB]
Get:139 http://172.17.0.1/private bookworm-staging/main armhf python3-setuptools all 58.2.0-1 [396 kB]
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invoke-rc.d: could not determine current runlevel
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
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Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libpython3.9:armhf (3.9.7-4+rpi1) ...
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Setting up libfreetype6:armhf (2.10.4+dfsg-1) ...
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Setting up automake (1:1.16.4-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libhts3:armhf (1.13+ds-2) ...
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Setting up fontconfig-config (2.13.1-4.2) ...
Setting up po-debconf (1.0.21+nmu1) ...
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Setting up libpython3.9-dev:armhf (3.9.7-4+rpi1) ...
Setting up python3 (3.9.2-3) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-tz (2021.3-1) ...
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Setting up dh-autoreconf (20) ...
Setting up python3-pil:armhf (8.1.2+dfsg-0.3) ...
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Setting up cython3 (0.29.21-3+b1) ...
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Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up python3-lib2to3 (3.9.7-1) ...
Setting up python3-pkg-resources (58.2.0-1) ...
Setting up python3-distutils (3.9.7-1) ...
Setting up dh-python (5.20211016.1) ...
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Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ...
Setting up python3-matplotlib (3.3.4-2) ...
Setting up python3-scipy (1.6.0-2) ...
Setting up blt (2.5.3+dfsg-4.1) ...
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Setting up python3-tk:armhf (3.9.7-1) ...
Setting up python3-pandas (1.1.5+dfsg-2) ...
Setting up python3-cutadapt (3.5-1) ...
Setting up python3-seaborn (0.11.2-1) ...
Setting up sbuild-build-depends-python-sqt-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-9+rpi1 gcc-10_10.3.0-9+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-9+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.51 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 blt_2.5.3+dfsg-4.1 bsdextrautils_2.37.2-3 bsdutils_1:2.37.2-1 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-9+rpi1 cython3_0.29.21-3+b1 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-python_5.20211016.1 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 fontconfig-config_2.13.1-4.2 fonts-lyx_2.3.6-1 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-9+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-9+rpi1 gcc-10-base_10.3.0-9+rpi1 gcc-11-base_11.2.0-9+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libasan6_11.2.0-9+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-9+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.5-1 libaudit1_1:3.0.5-1 libbinutils_2.37-5+rpi1 libblas3_3.10.0-1 libblkid1_2.37.2-1 libbrotli1_1.0.9-2+b1 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-9+rpi1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libcurl3-gnutls_7.74.0-1.3 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdeflate0_1.8-1 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libexpat1_2.4.1-2 libexpat1-dev_2.4.1-2 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libffi8_3.4.2-3 libfile-stripnondeterminism-perl_1.12.0-1 libfontconfig1_2.13.1-4.2 libfreetype6_2.10.4+dfsg-1 libgcc-10-dev_10.3.0-9+rpi1 libgcc-s1_11.2.0-9+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libgfortran5_11.2.0-9+rpi1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-9+rpi1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libhts3_1.13+ds-2 libhtscodecs2_1.1.1-3 libicu67_67.1-7 libidn2-0_2.3.2-2 libimagequant0_2.12.2-1.1 libisl23_0.23-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.0.6-4 libjs-jquery_3.5.1+dfsg+~3.5.5-7 libjs-jquery-ui_1.12.1+dfsg-8 libjs-sphinxdoc_4.2.0-4 libjs-underscore_1.9.1~dfsg-4 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 liblapack3_3.10.0-1 liblbfgsb0_3.0+dfsg.3-9 liblcms2-2_2.12~rc1-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmd0_1.0.4-1 libmount1_2.37.2-1 libmpc3_1.2.0-1 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-2 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-5 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libpsl5_0.21.0-1.2 libpython3-all-dev_3.9.2-3 libpython3-dev_3.9.2-3 libpython3-stdlib_3.9.2-3 libpython3.9_3.9.7-4+rpi1 libpython3.9-dev_3.9.7-4+rpi1 libpython3.9-minimal_3.9.7-4+rpi1 libpython3.9-stdlib_3.9.7-4+rpi1 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-1 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssh2-1_1.10.0-2 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-9+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.9-1+rpi1 libtasn1-6_4.17.0-2 libtcl8.6_8.6.11+dfsg-1 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtiff5_4.3.0-2 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtk8.6_8.6.11.1-1 libtool_2.4.6-15 libubsan1_11.2.0-9+rpi1 libuchardet0_0.0.7-1 libudev1_247.9-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-1 libwebp6_0.6.1-2.1 libwebpdemux2_0.6.1-2.1 libwebpmux3_0.6.1-2.1 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libxau6_1:1.0.9-1 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.2-2 libxml2_2.9.12+dfsg-5 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 mailcap_3.70 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 mime-support_3.66 mount_2.37.2-1 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-5 perl-base_5.32.1-5 perl-modules-5.32_5.32.1-5 pigz_2.6-1 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python-matplotlib-data_3.3.4-2 python3_3.9.2-3 python3-all_3.9.2-3 python3-all-dev_3.9.2-3 python3-cutadapt_3.5-1 python3-cycler_0.10.0-3 python3-dateutil_2.8.1-6 python3-decorator_4.4.2-2 python3-dev_3.9.2-3 python3-distutils_3.9.7-1 python3-dnaio_0.6.0-1 python3-kiwisolver_1.3.2-1 python3-lib2to3_3.9.7-1 python3-matplotlib_3.3.4-2 python3-minimal_3.9.2-3 python3-nose_1.3.7-7 python3-numpy_1:1.19.5-1 python3-pandas_1.1.5+dfsg-2 python3-pandas-lib_1.1.5+dfsg-2 python3-pil_8.1.2+dfsg-0.3 python3-pkg-resources_58.2.0-1 python3-pyparsing_2.4.7-1 python3-pysam_0.17.0+ds-2 python3-scipy_1.6.0-2 python3-seaborn_0.11.2-1 python3-setuptools_58.2.0-1 python3-six_1.16.0-2 python3-tk_3.9.7-1 python3-tz_2021.3-1 python3-xopen_1.2.0-2 python3.9_3.9.7-4+rpi1 python3.9-dev_3.9.7-4+rpi1 python3.9-minimal_3.9.7-4+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-sqt-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tk8.6-blt2.5_2.5.3+dfsg-4.1 ttf-bitstream-vera_1.10-8.1 tzdata_2021a-1 ucf_3.0043 util-linux_2.37.2-1 x11-common_1:7.7+23 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.iunUo_iy/trustedkeys.kbx': General error
gpgv: Signature made Fri Oct 15 07:38:43 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-sqt_0.8.0-5.dsc
dpkg-source: info: extracting python-sqt in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-sqt_0.8.0.orig.tar.gz
dpkg-source: info: unpacking python-sqt_0.8.0-5.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fixme_ignore_failing_test.patch
dpkg-source: info: applying fixme_ignore_failing_test2.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-f499dd66-0b36-406c-a303-8f033aa5fd13
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-sqt
dpkg-buildpackage: info: source version 0.8.0-5
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from python-sqt-0.8.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
install -d /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/home
pybuild --clean --test-nose -i python{version} -p 3.9
I: pybuild base:232: python3.9 setup.py clean
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead
warnings.warn(
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
rm -rf .pybuild/
find . -name \*.pyc -exec rm {} \;
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/python3-sqt.substvars debian/files
rm -fr -- debian/python3-sqt/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
install -d /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/home
pybuild --configure --test-nose -i python{version} -p 3.9
I: pybuild base:232: python3.9 setup.py config
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead
warnings.warn(
running config
dh_auto_build -a -O--buildsystem=pybuild
pybuild --build --test-nose -i python{version} -p 3.9
I: pybuild base:232: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead
warnings.warn(
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/_codons.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/align.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/ansicolor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/args.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/cigar.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/colorspace.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/compat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/dna.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/intervaltree.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/math.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/qualtrim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/reads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/region.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io
copying sqt/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io
copying sqt/io/bam.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io
copying sqt/io/fasta.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io
copying sqt/io/gtf.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io
copying sqt/io/sff.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/addadapt.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/align.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/bam2fastq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/bameof.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/bamstats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/chars.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/checkfastqpe.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/checkvcfref.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/compare_sequences.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/coverage.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/cutvect.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/fastaextract.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/fastagrep.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/fastastats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/fastxmod.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/fixbam64.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/histogram.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/mutate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/qgramfreq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/qualityguess.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/randomseq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/readcov.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/readlenhisto.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/samfixn.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/samsetop.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/simreads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/translate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
UPDATING /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/_version.py
set /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/_version.py to '0.8.0'
running build_ext
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/sqt/_helpers.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling sqt/_helpers.pyx because it changed.
[1/1] Cythonizing sqt/_helpers.pyx
building 'sqt._helpers' extension
creating build
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/sqt
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c sqt/_helpers.c -o build/temp.linux-armhf-3.9/sqt/_helpers.o
sqt/_helpers.c: In function ‘__pyx_pf_3sqt_8_helpers_12nt_to_aa’:
sqt/_helpers.c:6544:51: warning: array subscript has type ‘char’ [-Wchar-subscripts]
6544 | __pyx_v_nt0 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[__pyx_v_i])]);
| ~~~~~~~~~~^~~~~~~~~~~~
sqt/_helpers.c:6553:51: warning: array subscript has type ‘char’ [-Wchar-subscripts]
6553 | __pyx_v_nt1 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[(__pyx_v_i + 1)])]);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
sqt/_helpers.c:6562:51: warning: array subscript has type ‘char’ [-Wchar-subscripts]
6562 | __pyx_v_nt2 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[(__pyx_v_i + 2)])]);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/sqt/_helpers.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/_helpers.cpython-39-arm-linux-gnueabihf.so
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
LC_ALL=C.UTF-8 dh_auto_test
pybuild --test --test-nose -i python{version} -p 3.9
I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build; python3.9 -m nose -v tests
tests.testalign.test_edit_distance ... ok
tests.testalign.test_edit_distance_bytes ... ok
tests.testalign.test_edit_distance_banded ... ok
tests.testalign.test_global_alignment ... ok
tests.testalign.test_consensus ... ok
tests.testalign.test_hamming_distance ... ok
tests.testalign.test_hamming_distance_incorrect_length ... ok
tests.testcigar.test_parse ... ok
tests.testcigar.test_cigar_class ... ok
tests.testcigar.test_parse_error_1 ... ok
tests.testcigar.test_parse_error_2 ... ok
tests.testcigar.test_parse_error_3 ... ok
tests.testcigar.test_elements ... ok
tests.testcigar.test_length ... ok
tests.testcigar.test_concat ... ok
tests.testcigar.test_split_at_element ... ok
tests.testcigar.test_reference_to_query_position ... ok
tests.testcigar.test_clipping ... ok
tests.testcolorspace.test_encode ... ok
tests.testcolorspace.test_decode ... ok
tests.testdna.test_complement_string ... ok
tests.testdna.test_complement_bytes ... ok
tests.testdna.test_n_intervals ... ok
tests.testdna.test_intervals_complement ... ok
tests.testdna.test_amino_acid_regex ... ok
tests.testdna.test_nt_to_aa ... ok
tests.testfasta.test_fastqwriter ... ok
tests.testfasta.test_fastqwriter_twoheaders ... ok
tests.testfasta.test_fastawriter ... ok
tests.testfasta.test_fastawriter_linelength ... ok
tests.testfasta.test_fastawriter_sequence ... ok
tests.testfasta.test_fastawriter_contextmanager ... ok
tests.testfasta.test_fastareader ... ok
tests.testfasta.test_fastareader_upper ... ok
tests.testfasta.test_fastareader_lower ... ok
tests.testfasta.test_fastareader_binary ... ok
tests.testfasta.test_sequence_reader ... ok
tests.testfasta.test_fastareader_contextmanager ... ok
tests.testfasta.test_fastq_header ... ok
tests.testindexedfasta.test_indexedfasta_contextmanager ... ok
tests.testindexedfasta.test_indexedfasta ... ok
tests.testindexedfasta.test_all_regions ... ok
tests.testintervaltree.test_intervaltree ... ok
tests.testmedian.test_median ... ok
tests.testregion.test_region ... ok
----------------------------------------------------------------------
Ran 45 tests in 88.407s
OK
rm -fr -- /tmp/dh-xdg-rundir-igx11noA
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
rm -f -- debian/python3-sqt.substvars
rm -fr -- debian/.debhelper/generated/python3-sqt/ debian/python3-sqt/ debian/tmp/
dh_auto_install --destdir=debian/python3-sqt/ -a -O--buildsystem=pybuild
install -d /<<PKGBUILDDIR>>/debian/python3-sqt
pybuild --install --test-nose -i python{version} -p 3.9 --dest-dir /<<PKGBUILDDIR>>/debian/python3-sqt
I: pybuild base:232: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-sqt
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead
warnings.warn(
running install
running build
running build_py
UPDATING /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/_version.py
set /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/_version.py to '0.8.0'
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__main__.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/_codons.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/align.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/ansicolor.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/args.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/cigar.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/colorspace.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/compat.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/dna.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/intervaltree.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/math.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/qualtrim.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/reads.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/region.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/utils.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io/bam.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io/fasta.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io/gtf.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io/sff.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io/__pycache__/fasta.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io/__pycache__/gtf.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/addadapt.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/align.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/bam2fastq.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/bameof.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/bamstats.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/chars.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/checkfastqpe.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/checkvcfref.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/compare_sequences.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/coverage.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/cutvect.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/fastaextract.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/fastagrep.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/fastastats.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/fastxmod.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/fixbam64.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/histogram.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/mutate.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/qgramfreq.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/qualityguess.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/randomseq.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/readcov.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/readlenhisto.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/samfixn.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/samsetop.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/simreads.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/translate.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/_helpers.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/_version.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/args.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/compat.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/_codons.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/cigar.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/align.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/utils.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/colorspace.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/dna.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/intervaltree.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/math.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/region.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/_version.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__main__.py to __main__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/_codons.py to _codons.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/align.py to align.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/ansicolor.py to ansicolor.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/args.py to args.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/cigar.py to cigar.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/colorspace.py to colorspace.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/compat.py to compat.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/dna.py to dna.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/intervaltree.py to intervaltree.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/math.py to math.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/qualtrim.py to qualtrim.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/reads.py to reads.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/region.py to region.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/utils.py to utils.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io/bam.py to bam.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io/fasta.py to fasta.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io/gtf.py to gtf.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io/sff.py to sff.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/addadapt.py to addadapt.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/align.py to align.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/bam2fastq.py to bam2fastq.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/bameof.py to bameof.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/bamstats.py to bamstats.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/chars.py to chars.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/checkfastqpe.py to checkfastqpe.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/checkvcfref.py to checkvcfref.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/compare_sequences.py to compare_sequences.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/coverage.py to coverage.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/cutvect.py to cutvect.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/fastaextract.py to fastaextract.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/fastagrep.py to fastagrep.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/fastastats.py to fastastats.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/fastxmod.py to fastxmod.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/fixbam64.py to fixbam64.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/histogram.py to histogram.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/mutate.py to mutate.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/qgramfreq.py to qgramfreq.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/qualityguess.py to qualityguess.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/randomseq.py to randomseq.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/readcov.py to readcov.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/readlenhisto.py to readlenhisto.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/samfixn.py to samfixn.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/samsetop.py to samsetop.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/simreads.py to simreads.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/translate.py to translate.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/_version.py to _version.cpython-39.pyc
running install_egg_info
running egg_info
creating sqt.egg-info
writing sqt.egg-info/PKG-INFO
writing dependency_links to sqt.egg-info/dependency_links.txt
writing entry points to sqt.egg-info/entry_points.txt
writing requirements to sqt.egg-info/requires.txt
writing top-level names to sqt.egg-info/top_level.txt
writing manifest file 'sqt.egg-info/SOURCES.txt'
reading manifest file 'sqt.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'sqt.egg-info/SOURCES.txt'
Copying sqt.egg-info to /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt-0.8.0.egg-info
Skipping SOURCES.txt
running install_scripts
Installing sqt script to /<<PKGBUILDDIR>>/debian/python3-sqt/usr/bin
dh_installdocs -a -O--buildsystem=pybuild
install -d debian/python3-sqt/usr/share/doc/python3-sqt
install -d debian/.debhelper/generated/python3-sqt
install -p -m0644 debian/README.Debian debian/python3-sqt/usr/share/doc/python3-sqt/README.Debian
install -p -m0644 debian/copyright debian/python3-sqt/usr/share/doc/python3-sqt/copyright
dh_installchangelogs -a -O--buildsystem=pybuild
install -p -m0644 debian/changelog debian/python3-sqt/usr/share/doc/python3-sqt/changelog.Debian
dh_installman -a -O--buildsystem=pybuild
install -d debian/python3-sqt/usr/share/man/man1/
install -p -m0644 ./debian/sqt.1 debian/python3-sqt/usr/share/man/man1/sqt.1
man-recode --to-code UTF-8 --suffix .dh-new debian/python3-sqt/usr/share/man/man1/sqt.1
mv debian/python3-sqt/usr/share/man/man1/sqt.1.dh-new debian/python3-sqt/usr/share/man/man1/sqt.1
chmod 0644 -- debian/python3-sqt/usr/share/man/man1/sqt.1
dh_python3 -a -O--buildsystem=pybuild
D: dh_python3 dh_python3:161: version: 5.20211016.1
D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild']
D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': True, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'}
D: dh_python3 dh_python3:164: args: []
D: dh_python3 dh_python3:165: supported Python versions: 3.9 (default=3.9)
D: dh_python3 debhelper:152: source=python-sqt, binary packages=['python3-sqt']
D: dh_python3 dh_python3:183: processing package python3-sqt...
D: dh_python3 fs:49: moving files from debian/python3-sqt/usr/lib/python3.9/dist-packages to debian/python3-sqt/usr/lib/python3/dist-packages/
D: dh_python3 fs:265: package python3-sqt details = {'requires.txt': {'debian/python3-sqt/usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/requires.txt'}, 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.9')}, 'ext_no_version': set()}
D: dh_python3 depends:118: generating dependencies for package python3-sqt
D: dh_python3 pydist:142: trying to find dependency for cutadapt (python=None)
D: dh_python3 pydist:142: trying to find dependency for matplotlib (python=None)
D: dh_python3 pydist:142: trying to find dependency for pysam!=0.9.0 (python=None)
D: dh_python3 pydist:142: trying to find dependency for seaborn (python=None)
D: dh_python3 pydist:142: trying to find dependency for xopen (python=None)
D: dh_python3 depends:282: D={'python3 (>= 3.9~)', 'python3-cutadapt', 'python3-matplotlib', 'python3:any', 'python3-seaborn', 'python3-pysam', 'python3 (<< 3.10)', 'python3-xopen'}; R=[]; S=[]; E=[], B=[]; RT=[]
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
cd debian/python3-sqt
chmod a-x usr/share/doc/python3-sqt/changelog.Debian usr/share/man/man1/sqt.1
gzip -9nf usr/share/doc/python3-sqt/changelog.Debian usr/share/man/man1/sqt.1
cd '/<<PKGBUILDDIR>>'
dh_fixperms -a -O--buildsystem=pybuild
find debian/python3-sqt ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/python3-sqt/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-sqt/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-sqt/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/python3-sqt/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-sqt -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-sqt/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
find debian/python3-sqt/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dwz -- debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-39-arm-linux-gnueabihf.so
dh_strip -a -O--buildsystem=pybuild
install -d debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/a3
objcopy --only-keep-debug --compress-debug-sections debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-39-arm-linux-gnueabihf.so debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/a3/a6f99b0ba07b2b2787f8b46428450fdfd92ce8.debug
chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/a3/a6f99b0ba07b2b2787f8b46428450fdfd92ce8.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-39-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/a3/a6f99b0ba07b2b2787f8b46428450fdfd92ce8.debug debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-39-arm-linux-gnueabihf.so
install -d debian/.debhelper/python3-sqt/dbgsym-root/usr/share/doc
ln -s python3-sqt debian/.debhelper/python3-sqt/dbgsym-root/usr/share/doc/python3-sqt-dbgsym
dh_makeshlibs -a -O--buildsystem=pybuild
rm -f debian/python3-sqt/DEBIAN/shlibs
dh_shlibdeps -a -O--buildsystem=pybuild
install -d debian/python3-sqt/DEBIAN
dpkg-shlibdeps -Tdebian/python3-sqt.substvars debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-39-arm-linux-gnueabihf.so
dh_installdeb -a -O--buildsystem=pybuild
printf '#!/bin/sh\nset -e\n' > debian/python3-sqt/DEBIAN/postinst
cat debian/python3-sqt.postinst.debhelper >> debian/python3-sqt/DEBIAN/postinst
chmod 0755 -- debian/python3-sqt/DEBIAN/postinst
printf '#!/bin/sh\nset -e\n' > debian/python3-sqt/DEBIAN/prerm
cat debian/python3-sqt.prerm.debhelper >> debian/python3-sqt/DEBIAN/prerm
chmod 0755 -- debian/python3-sqt/DEBIAN/prerm
dh_gencontrol -a -O--buildsystem=pybuild
echo misc:Depends= >> debian/python3-sqt.substvars
echo misc:Pre-Depends= >> debian/python3-sqt.substvars
install -d debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN
dpkg-gencontrol -ppython3-sqt -ldebian/changelog -Tdebian/python3-sqt.substvars -Pdebian/.debhelper/python3-sqt/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=python3-sqt-dbgsym "-DDepends=python3-sqt (= \${binary:Version})" "-DDescription=debug symbols for python3-sqt" -DBuild-Ids=a3a6f99b0ba07b2b2787f8b46428450fdfd92ce8 -DSection=debug -UMulti-Arch -UReplaces -UBreaks
dpkg-gencontrol: warning: package python3-sqt: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-sqt: substitution variable ${python3:Versions} unused, but is defined
chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN/control
dpkg-gencontrol -ppython3-sqt -ldebian/changelog -Tdebian/python3-sqt.substvars -Pdebian/python3-sqt
dpkg-gencontrol: warning: package python3-sqt: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-sqt: substitution variable ${python3:Versions} unused, but is defined
chmod 0644 -- debian/python3-sqt/DEBIAN/control
dh_md5sums -a -O--buildsystem=pybuild
cd debian/python3-sqt >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/python3-sqt/DEBIAN/md5sums
cd debian/.debhelper/python3-sqt/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN/md5sums
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb --root-owner-group --build debian/python3-sqt ..
dpkg-deb --root-owner-group --build debian/.debhelper/python3-sqt/dbgsym-root ..
dpkg-deb: building package 'python3-sqt-dbgsym' in '../python3-sqt-dbgsym_0.8.0-5_armhf.deb'.
dpkg-deb: building package 'python3-sqt' in '../python3-sqt_0.8.0-5_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../python-sqt_0.8.0-5_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-source: info: using options from python-sqt-0.8.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-10-20T08:21:43Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-sqt_0.8.0-5_armhf.changes:
---------------------------------
Format: 1.8
Date: Fri, 15 Oct 2021 09:11:56 +0200
Source: python-sqt
Binary: python3-sqt python3-sqt-dbgsym
Architecture: armhf
Version: 0.8.0-5
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
python3-sqt - SeQuencing Tools for biological DNA/RNA high-throughput data
Changes:
python-sqt (0.8.0-5) unstable; urgency=medium
.
* Team upload.
* Point watch file to bitbucket
* Standards-Version: 4.6.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Set upstream metadata fields: Repository.
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Files:
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011012e7a5ea3ede75d81ae3bb2ab980 299916 debug optional python3-sqt-dbgsym_0.8.0-5_armhf.deb
35441eda520847a3cbd4f7cee80170d6 109200 python optional python3-sqt_0.8.0-5_armhf.deb
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python3-sqt-dbgsym_0.8.0-5_armhf.deb
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new Debian package, version 2.0.
size 299916 bytes: control archive=540 bytes.
385 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: python3-sqt-dbgsym
Source: python-sqt
Version: 0.8.0-5
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 330
Depends: python3-sqt (= 0.8.0-5)
Section: debug
Priority: optional
Description: debug symbols for python3-sqt
Build-Ids: a3a6f99b0ba07b2b2787f8b46428450fdfd92ce8
drwxr-xr-x root/root 0 2021-10-15 07:11 ./
drwxr-xr-x root/root 0 2021-10-15 07:11 ./usr/
drwxr-xr-x root/root 0 2021-10-15 07:11 ./usr/lib/
drwxr-xr-x root/root 0 2021-10-15 07:11 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-10-15 07:11 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-10-15 07:11 ./usr/lib/debug/.build-id/a3/
-rw-r--r-- root/root 327604 2021-10-15 07:11 ./usr/lib/debug/.build-id/a3/a6f99b0ba07b2b2787f8b46428450fdfd92ce8.debug
drwxr-xr-x root/root 0 2021-10-15 07:11 ./usr/share/
drwxr-xr-x root/root 0 2021-10-15 07:11 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-10-15 07:11 ./usr/share/doc/python3-sqt-dbgsym -> python3-sqt
python3-sqt_0.8.0-5_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 109200 bytes: control archive=3348 bytes.
2213 bytes, 46 lines control
5181 bytes, 61 lines md5sums
259 bytes, 12 lines * postinst #!/bin/sh
408 bytes, 12 lines * prerm #!/bin/sh
Package: python3-sqt
Source: python-sqt
Version: 0.8.0-5
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 365
Depends: libc6 (>= 2.4), python3 (<< 3.10), python3 (>= 3.9~), python3-cutadapt, python3-matplotlib, python3-pysam, python3-seaborn, python3-xopen, python3:any
Recommends: fonts-noto-color-emoji
Section: python
Priority: optional
Homepage: https://bitbucket.org/marcelm/sqt
Description: SeQuencing Tools for biological DNA/RNA high-throughput data
sqt is a collection of command-line tools for working with
high-throughput sequencing data. Conceptionally not fixed to use any
particular language, many sqt subcommands are currently implemented
in Python. For them, a Python package is available with functions for
reading and writing FASTA/FASTQ files, computing alignments, quality
trimming, etc.
.
The following tools are offered:
* sqt-coverage -- Compute per-reference statistics such as coverage
and GC content
* sqt-fastqmod -- FASTQ modifications: shorten, subset, reverse
complement, quality trimming.
* sqt-fastastats -- Compute N50, min/max length, GC content etc. of
a FASTA file
* sqt-qualityguess -- Guess quality encoding of one or more FASTA files.
* sqt-globalalign -- Compute a global or semiglobal alignment of two strings.
* sqt-chars -- Count length of the first word given on the command line.
* sqt-sam-cscq -- Add the CS and CQ tags to a SAM file with colorspace reads.
* sqt-fastamutate -- Add substitutions and indels to sequences in a
FASTA file.
* sqt-fastaextract -- Efficiently extract one or more regions from an
indexed FASTA file.
* sqt-translate -- Replace characters in FASTA files (like the 'tr'
command).
* sqt-sam-fixn -- Replace all non-ACGT characters within reads in a
SAM file.
* sqt-sam-insertsize -- Mean and standard deviation of paired-end
insert sizes.
* sqt-sam-set-op -- Set operations (union, intersection, ...) on
SAM/BAM files.
* sqt-bam-eof -- Check for the End-Of-File marker in compressed
BAM files.
* sqt-checkfastqpe -- Check whether two FASTQ files contain correctly
paired paired-end data.
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drwxr-xr-x root/root 0 2021-10-15 07:11 ./usr/lib/
drwxr-xr-x root/root 0 2021-10-15 07:11 ./usr/lib/python3/
drwxr-xr-x root/root 0 2021-10-15 07:11 ./usr/lib/python3/dist-packages/
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-rw-r--r-- root/root 4 2021-10-15 07:11 ./usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/top_level.txt
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-rw-r--r-- root/root 360 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/__init__.py
-rw-r--r-- root/root 1401 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/__main__.py
-rw-r--r-- root/root 855 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/_codons.py
-rw-r--r-- root/root 157592 2021-10-15 07:11 ./usr/lib/python3/dist-packages/sqt/_helpers.cpython-39-arm-linux-gnueabihf.so
-rw-r--r-- root/root 471 2021-10-15 07:11 ./usr/lib/python3/dist-packages/sqt/_version.py
-rw-r--r-- root/root 6070 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/align.py
-rw-r--r-- root/root 1980 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/ansicolor.py
-rw-r--r-- root/root 516 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/args.py
-rw-r--r-- root/root 11249 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/cigar.py
-rw-r--r-- root/root 1812 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/colorspace.py
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-rw-r--r-- root/root 0 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/__init__.py
-rw-r--r-- root/root 2423 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/addadapt.py
-rw-r--r-- root/root 3535 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/align.py
-rw-r--r-- root/root 4560 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/bam2fastq.py
-rw-r--r-- root/root 1389 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/bameof.py
-rw-r--r-- root/root 7998 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/bamstats.py
-rw-r--r-- root/root 444 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/chars.py
-rw-r--r-- root/root 2183 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/checkfastqpe.py
-rw-r--r-- root/root 1261 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/checkvcfref.py
-rw-r--r-- root/root 4808 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/compare_sequences.py
-rw-r--r-- root/root 3411 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/coverage.py
-rw-r--r-- root/root 4408 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/cutvect.py
-rw-r--r-- root/root 3170 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/fastaextract.py
-rw-r--r-- root/root 2277 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/fastagrep.py
-rw-r--r-- root/root 6023 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/fastastats.py
-rw-r--r-- root/root 9378 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/fastxmod.py
-rw-r--r-- root/root 871 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/fixbam64.py
-rw-r--r-- root/root 1399 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/histogram.py
-rw-r--r-- root/root 1229 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/mutate.py
-rw-r--r-- root/root 1055 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/qgramfreq.py
-rw-r--r-- root/root 1516 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/qualityguess.py
-rw-r--r-- root/root 787 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/randomseq.py
-rw-r--r-- root/root 1830 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/readcov.py
-rw-r--r-- root/root 3897 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/readlenhisto.py
-rw-r--r-- root/root 845 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/samfixn.py
-rw-r--r-- root/root 4892 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/samsetop.py
-rw-r--r-- root/root 2002 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/simreads.py
-rw-r--r-- root/root 1490 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/translate.py
-rw-r--r-- root/root 554 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/compat.py
-rw-r--r-- root/root 3993 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/dna.py
-rw-r--r-- root/root 3914 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/intervaltree.py
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-rw-r--r-- root/root 25513 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/io/fasta.py
-rw-r--r-- root/root 1818 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/io/gtf.py
-rw-r--r-- root/root 10121 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/io/sff.py
-rw-r--r-- root/root 1550 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/math.py
-rw-r--r-- root/root 494 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/qualtrim.py
-rw-r--r-- root/root 4190 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/reads.py
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-rw-r--r-- root/root 606 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/utils.py
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-rw-r--r-- root/root 491 2021-10-15 07:11 ./usr/share/doc/python3-sqt/changelog.Debian.gz
-rw-r--r-- root/root 1651 2021-10-15 07:11 ./usr/share/doc/python3-sqt/copyright
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-rw-r--r-- root/root 886 2021-10-15 07:11 ./usr/share/man/man1/sqt.1.gz
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| Cleanup |
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Purging /<<BUILDDIR>>
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| Summary |
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Build Architecture: armhf
Build-Space: 5872
Build-Time: 232
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1038
Job: python-sqt_0.8.0-5
Machine Architecture: armhf
Package: python-sqt
Package-Time: 1322
Source-Version: 0.8.0-5
Space: 5872
Status: successful
Version: 0.8.0-5
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Finished at 2021-10-20T08:21:43Z
Build needed 00:22:02, 5872k disc space