python-sqt →
0.8.0-4 →
armhf → 2020-02-10 06:06:07
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| python-sqt 0.8.0-4 (armhf) Mon, 10 Feb 2020 05:38:26 +0000 |
+==============================================================================+
Package: python-sqt
Version: 0.8.0-4
Source Version: 0.8.0-4
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-c196dc01-15f1-45be-b092-263288f6b6b2' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.7 MB]
Fetched 24.2 MB in 27s (886 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-sqt' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-sqt.git
Please use:
git clone https://salsa.debian.org/med-team/python-sqt.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 124 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main python-sqt 0.8.0-4 (dsc) [2187 B]
Get:2 http://172.17.0.1/private bullseye-staging/main python-sqt 0.8.0-4 (tar) [116 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main python-sqt 0.8.0-4 (diff) [4960 B]
Fetched 124 kB in 0s (2173 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-sqt-fzqt68/python-sqt-0.8.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-sqt-fzqt68' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-B9F3iy/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-B9F3iy/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-B9F3iy/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-B9F3iy/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-B9F3iy/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-B9F3iy/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-B9F3iy/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-B9F3iy/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2743 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 3 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-B9F3iy/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12256 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-python, python3-all-dev, python3-setuptools, cython3, python3-nose, python3-cutadapt, python3-pysam, python3-seaborn, python3-xopen
Filtered Build-Depends: debhelper-compat (= 12), dh-python, python3-all-dev, python3-setuptools, cython3, python3-nose, python3-cutadapt, python3-pysam, python3-seaborn, python3-xopen
dpkg-deb: building package 'sbuild-build-depends-python-sqt-dummy' in '/<<BUILDDIR>>/resolver-B9F3iy/apt_archive/sbuild-build-depends-python-sqt-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-sqt-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-B9F3iy/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-B9F3iy/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-B9F3iy/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-B9F3iy/apt_archive ./ Sources [563 B]
Get:5 copy:/<<BUILDDIR>>/resolver-B9F3iy/apt_archive ./ Packages [631 B]
Fetched 2527 B in 1s (3103 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install python-sqt build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev blt bsdmainutils cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config
fonts-lyx gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcroco3 libcurl3-gnutls
libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran5
libglib2.0-0 libgssapi-krb5-2 libhts3 libicu63 libjs-jquery libjs-jquery-ui
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0
libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpipeline1 libpng16-16
libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7
libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libpython3.8
libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib librtmp1
libsigsegv2 libssh2-1 libssl1.1 libsub-override-perl libtcl8.6 libtinfo5
libtk8.6 libtool libuchardet0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxrender1 libxss1 m4 man-db mime-support pigz
po-debconf python-matplotlib-data python3 python3-all python3-all-dev
python3-cutadapt python3-cycler python3-dateutil python3-decorator
python3-dev python3-distutils python3-dnaio python3-kiwisolver
python3-lib2to3 python3-matplotlib python3-minimal python3-nose
python3-numpy python3-pandas python3-pandas-lib python3-pkg-resources
python3-pyparsing python3-pysam python3-scipy python3-seaborn
python3-setuptools python3-six python3-tk python3-tz python3-xopen python3.7
python3.7-dev python3.7-minimal python3.8 python3.8-dev python3.8-minimal
sensible-utils tk8.6-blt2.5 ttf-bitstream-vera ucf x11-common zlib1g
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc blt-demo wamerican | wordlist
whois vacation cython-doc dh-make gettext-doc libasprintf-dev
libgettextpo-dev groff krb5-doc krb5-user libjs-jquery-ui-docs tcl8.6 tk8.6
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python3-doc python3-venv python-cycler-doc
dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape ipython3 librsvg2-common
python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo
python3-gobject python3-pyqt5 python3-sip python3-tornado
texlive-extra-utils texlive-latex-extra ttf-staypuft python-nose-doc
gfortran python-numpy-doc python3-pytest python3-numpy-dbg python-pandas-doc
python3-statsmodels python-pyparsing-doc python-scipy-doc
python-setuptools-doc tix python3-tk-dbg python3.7-venv python3.7-doc
binfmt-support python3.8-venv python3.8-doc
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs javascript-common krb5-locales publicsuffix
libltdl-dev libmail-sendmail-perl python3-pil python3-numexpr python3-tables
python3-xlrd python3-openpyxl python3-xlwt python3-bs4 python3-html5lib
python3-lxml python3-patsy
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev blt bsdmainutils cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config
fonts-lyx gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcroco3 libcurl3-gnutls
libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran5
libglib2.0-0 libgssapi-krb5-2 libhts3 libicu63 libjs-jquery libjs-jquery-ui
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0
libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpipeline1 libpng16-16
libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7
libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libpython3.8
libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib librtmp1
libsigsegv2 libssh2-1 libssl1.1 libsub-override-perl libtcl8.6 libtinfo5
libtk8.6 libtool libuchardet0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxrender1 libxss1 m4 man-db mime-support pigz
po-debconf python-matplotlib-data python3 python3-all python3-all-dev
python3-cutadapt python3-cycler python3-dateutil python3-decorator
python3-dev python3-distutils python3-dnaio python3-kiwisolver
python3-lib2to3 python3-matplotlib python3-minimal python3-nose
python3-numpy python3-pandas python3-pandas-lib python3-pkg-resources
python3-pyparsing python3-pysam python3-scipy python3-seaborn
python3-setuptools python3-six python3-tk python3-tz python3-xopen python3.7
python3.7-dev python3.7-minimal python3.8 python3.8-dev python3.8-minimal
sbuild-build-depends-python-sqt-dummy sensible-utils tk8.6-blt2.5
ttf-bitstream-vera ucf x11-common zlib1g-dev
The following packages will be upgraded:
zlib1g
1 upgraded, 131 newly installed, 0 to remove and 2 not upgraded.
Need to get 166 MB of archives.
After this operation, 465 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-B9F3iy/apt_archive ./ sbuild-build-depends-python-sqt-dummy 0.invalid.0 [920 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf zlib1g armhf 1:1.2.11.dfsg-1.2 [84.6 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-2 [1261 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf pigz armhf 2.4-1 [47.2 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.6-1+b1 [585 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.6-1+b1 [1525 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.7.5-3 [36.8 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.6-1+b1 [1669 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.6-1+b1 [351 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.7.5-3 [20.2 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.7.5-3 [62.1 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.1-2+b1 [743 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.1-2+b1 [1621 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-4 [112 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0038+nmu1 [69.0 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libtcl8.6 armhf 8.6.10+dfsg-1 [886 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-1 [274 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.1-2 [330 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf ttf-bitstream-vera all 1.10-8 [352 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.13.1-2 [132 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.8-1 [298 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.8-1 [691 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+20 [252 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libtk8.6 armhf 8.6.10-1 [678 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4 [468 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf blt armhf 2.5.3+dfsg-4 [14.8 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.14-0.1 [1375 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.9 [183 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-2 [14.7 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.4-1+rpi1 [1137 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-8 [593 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.9 [994 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.0-1 [78.3 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.0-1 [145 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20191017 [94.4 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf fonts-lyx all 2.3.4-1 [199 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-1 [108 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6 [261 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6-6 [14.0 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1+b2 [74.2 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.67.0-2 [284 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.5-1 [78.0 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 9.2.1-25+rpi1 [231 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libhts3 armhf 1.10.2-2 [327 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery all 3.3.1~dfsg-3 [332 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-1 [1597 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-7 [26.1 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7 armhf 3.7.6-1+b1 [1256 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-dev armhf 3.7.6-1+b1 [40.2 MB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.7.5-3 [20.3 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.1-2+b1 [1598 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8 armhf 3.8.1-2+b1 [1360 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-dev armhf 3.8.1-2+b1 [46.0 MB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.7.5-3 [1072 B]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf python-matplotlib-data all 3.1.2-1 [4139 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.1-2+b1 [406 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.7.5-3 [1060 B]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1.2 [203 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf python3.7-dev armhf 3.7.6-1+b1 [518 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.7.5-3 [1260 B]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf python3.8-dev armhf 3.8.1-2+b1 [519 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.7.5-3 [1076 B]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 44.0.0-1 [155 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf python3-xopen all 0.8.4-1 [9484 B]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf python3-dnaio armhf 0.4.1-2 [137 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf python3-cutadapt armhf 2.8-1 [118 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.14.0-2 [16.7 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf python3-cycler all 0.10.0-2 [7976 B]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf python3-dateutil all 2.7.3-3 [64.5 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf python3-decorator all 4.3.0-1.1 [14.5 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf python3-kiwisolver armhf 1.0.1-2+b2 [72.0 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf python3-pyparsing all 2.4.2-1 [106 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.17.4-5+b1 [4484 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf python3-matplotlib armhf 3.1.2-1+b1 [5303 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf python3-nose all 1.3.7-4 [132 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf python3-tz all 2019.3-1 [27.2 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf python3-pandas-lib armhf 0.25.3+dfsg-4 [3683 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf python3-pandas all 0.25.3+dfsg-4 [1983 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf python3-pysam armhf 0.15.4+ds-1 [2363 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf python3-scipy armhf 1.3.3-3+b1 [12.1 MB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf python3-tk armhf 3.8.0-1 [107 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf python3-seaborn all 0.9.0-2 [158 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 44.0.0-1 [313 kB]
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Setting up libkeyutils1:armhf (1.6-6) ...
Setting up libpsl5:armhf (0.20.2-2) ...
Setting up ttf-bitstream-vera (1.10-8) ...
Setting up libpython3.8-minimal:armhf (3.8.1-2+b1) ...
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Setting up libglib2.0-0:armhf (2.62.4-1+rpi1) ...
No schema files found: doing nothing.
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Setting up x11-common (1:7.7+20) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
invoke-rc.d: could not determine current runlevel
invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block.
Setting up libnghttp2-14:armhf (1.40.0-1+b2) ...
Setting up libmagic1:armhf (1:5.38-4) ...
Setting up libdeflate0 (1.5-1) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-4) ...
Setting up libicu63:armhf (63.2-2) ...
Setting up libkrb5support0:armhf (1.17-6+b1) ...
Setting up autotools-dev (20180224.1) ...
Setting up libblas3:armhf (3.9.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libexpat1-dev:armhf (2.2.9-1) ...
Setting up libx11-data (2:1.6.8-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libpng16-16:armhf (1.6.37-1) ...
Setting up libtcl8.6:armhf (8.6.10+dfsg-1) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libk5crypto3:armhf (1.17-6+b1) ...
Setting up libgfortran5:armhf (9.2.1-25+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1.2) ...
Setting up python3.8-minimal (3.8.1-2+b1) ...
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Setting up pigz (2.4-1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libsub-override-perl (0.09-2) ...
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Setting up libkrb5-3:armhf (1.17-6+b1) ...
Setting up libmpdec2:armhf (2.4.2-2) ...
Setting up libjs-jquery (3.3.1~dfsg-3) ...
Setting up libpython3.8-stdlib:armhf (3.8.1-2+b1) ...
Setting up python3.8 (3.8.1-2+b1) ...
Setting up python-matplotlib-data (3.1.2-1) ...
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Setting up libxml2:armhf (2.9.4+dfsg1-8) ...
Setting up libfile-stripnondeterminism-perl (1.6.3-2) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libpython3.7-stdlib:armhf (3.7.6-1+b1) ...
Setting up liblapack3:armhf (3.9.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.13.1-2) ...
Setting up libpython3.7:armhf (3.7.6-1+b1) ...
Setting up libtool (2.4.6-11) ...
Setting up libpython3.7-dev:armhf (3.7.6-1+b1) ...
Setting up m4 (1.4.18-4) ...
Setting up libjs-jquery-ui (1.12.1+dfsg-5) ...
Setting up libfreetype6:armhf (2.10.1-2) ...
Setting up libpython3.8:armhf (3.8.1-2+b1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgssapi-krb5-2:armhf (1.17-6+b1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up ucf (3.0038+nmu1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.6.3-2) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-4) ...
Setting up libx11-6:armhf (2:1.6.8-1) ...
Setting up libpython3-stdlib:armhf (3.7.5-3) ...
Setting up liblbfgsb0:armhf (3.0+dfsg.3-7) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up python3.7 (3.7.6-1+b1) ...
Setting up gettext (0.19.8.1-10) ...
Setting up libpython3-dev:armhf (3.7.5-3) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up fontconfig-config (2.13.1-2) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libcurl3-gnutls:armhf (7.67.0-2) ...
Setting up python3 (3.7.5-3) ...
Setting up man-db (2.9.0-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3.7-dev (3.7.6-1+b1) ...
Setting up python3-tz (2019.3-1) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up python3-six (1.14.0-2) ...
Setting up python3-decorator (4.3.0-1.1) ...
Setting up python3-pyparsing (2.4.2-1) ...
Setting up libpython3.8-dev:armhf (3.8.1-2+b1) ...
Setting up libpython3-all-dev:armhf (3.7.5-3) ...
Setting up python3-cycler (0.10.0-2) ...
Setting up cython3 (0.29.14-0.1) ...
Setting up python3.8-dev (3.8.1-2+b1) ...
Setting up python3-dateutil (2.7.3-3) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libfontconfig1:armhf (2.13.1-2) ...
Setting up python3-lib2to3 (3.8.0-1) ...
Setting up python3-pkg-resources (44.0.0-1) ...
Setting up python3-distutils (3.8.0-1) ...
Setting up dh-python (4.20191017) ...
Setting up libxft2:armhf (2.3.2-2) ...
Setting up libhts3:armhf (1.10.2-2) ...
Setting up python3-pysam (0.15.4+ds-1) ...
Setting up python3-setuptools (44.0.0-1) ...
Setting up po-debconf (1.0.21) ...
Setting up libtk8.6:armhf (8.6.10-1) ...
Setting up python3-all (3.7.5-3) ...
Setting up python3-nose (1.3.7-4) ...
Setting up python3-xopen (0.8.4-1) ...
Setting up python3-dev (3.7.5-3) ...
Setting up python3-kiwisolver (1.0.1-2+b2) ...
Setting up python3-numpy (1:1.17.4-5+b1) ...
Setting up python3-dnaio (0.4.1-2) ...
Setting up python3-all-dev (3.7.5-3) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-4) ...
Setting up python3-matplotlib (3.1.2-1+b1) ...
Setting up python3-scipy (1.3.3-3+b1) ...
Setting up blt (2.5.3+dfsg-4) ...
Setting up python3-pandas-lib (0.25.3+dfsg-4) ...
Setting up python3-tk:armhf (3.8.0-1) ...
Setting up python3-pandas (0.25.3+dfsg-4) ...
/usr/lib/python3/dist-packages/pandas/tests/frame/test_alter_axes.py:241: SyntaxWarning: "is" with a literal. Did you mean "=="?
False if (keys[0] is "A" and keys[1] is "A") else drop # noqa: F632
/usr/lib/python3/dist-packages/pandas/tests/frame/test_alter_axes.py:241: SyntaxWarning: "is" with a literal. Did you mean "=="?
False if (keys[0] is "A" and keys[1] is "A") else drop # noqa: F632
Setting up python3-cutadapt (2.8-1) ...
Setting up python3-seaborn (0.9.0-2) ...
/usr/lib/python3/dist-packages/seaborn/tests/test_relational.py:415: SyntaxWarning: "is" with a literal. Did you mean "=="?
assert p.hue_type is "categorical"
/usr/lib/python3/dist-packages/seaborn/tests/test_relational.py:455: SyntaxWarning: "is" with a literal. Did you mean "=="?
assert p.hue_type is "categorical"
/usr/lib/python3/dist-packages/seaborn/tests/test_relational.py:475: SyntaxWarning: "is" with a literal. Did you mean "=="?
assert p.hue_type is "categorical"
/usr/lib/python3/dist-packages/seaborn/tests/test_relational.py:482: SyntaxWarning: "is" with a literal. Did you mean "=="?
assert p.hue_type is "numeric"
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.9) ...
Setting up sbuild-build-depends-python-sqt-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-9+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.33.90.20200122-2+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-25+rpi1 gcc-9_9.2.1-25+rpi1 libc6-dev_2.29-9+rpi1 libstdc++-9-dev_9.2.1-25+rpi1 libstdc++6_9.2.1-25+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-5 binutils_2.33.90.20200122-2+rpi1 binutils-arm-linux-gnueabihf_2.33.90.20200122-2+rpi1 binutils-common_2.33.90.20200122-2+rpi1 blt_2.5.3+dfsg-4 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-25+rpi1 cython3_0.29.14-0.1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20191017 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dirmngr_2.2.19-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 fontconfig-config_2.13.1-2 fonts-lyx_2.3.4-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-25+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-6-base_6.5.0-1+rpi3 gcc-7-base_7.5.0-3+b1 gcc-8-base_8.3.0-26+rpi1 gcc-9_9.2.1-25+rpi1 gcc-9-base_9.2.1-25+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.19-1 gnupg-l10n_2.2.19-1 gnupg-utils_2.2.19-1 gpg_2.2.19-1 gpg-agent_2.2.19-1 gpg-wks-client_2.2.19-1 gpg-wks-server_2.2.19-1 gpgconf_2.2.19-1 gpgsm_2.2.19-1 gpgv_2.2.19-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.9-3 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-25+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-25+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.33.90.20200122-2+rpi1 libblas3_3.9.0-1 libblkid1_2.34-0.1 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-9+rpi1 libc-dev-bin_2.29-9+rpi1 libc6_2.29-9+rpi1 libc6-dev_2.29-9+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcap2-bin_1:2.27-1 libcc1-0_9.2.1-25+rpi1 libcom-err2_1.45.5-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10+b5 libcrypt1_1:4.4.10-10+b5 libctf-nobfd0_2.33.90.20200122-2+rpi1 libctf0_2.33.90.20200122-2+rpi1 libcurl3-gnutls_7.67.0-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.9 libdeflate0_1.5-1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libfontconfig1_2.13.1-2 libfreetype6_2.10.1-2 libgcc-9-dev_9.2.1-25+rpi1 libgcc1_1:9.2.1-25+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_9.2.1-25+rpi1 libglib2.0-0_2.62.4-1+rpi1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-25+rpi1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6+b1 libhogweed5_3.5.1+really3.5.1-2 libhts3_1.10.2-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl22_0.22-2 libjs-jquery_3.3.1~dfsg-3 libjs-jquery-ui_1.12.1+dfsg-5 libk5crypto3_1.17-6+b1 libkeyutils1_1.6-6 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 liblapack3_3.9.0-1 liblbfgsb0_3.0+dfsg.3-7 libldap-2.4-2_2.4.48+dfsg-1+b2 libldap-common_2.4.48+dfsg-1 liblocale-gettext-perl_1.07-4 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1+b2 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2+b1 libpam-cap_1:2.27-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpng16-16_1.6.37-1 libpsl5_0.20.2-2 libpython3-all-dev_3.7.5-3 libpython3-dev_3.7.5-3 libpython3-stdlib_3.7.5-3 libpython3.7_3.7.6-1+b1 libpython3.7-dev_3.7.6-1+b1 libpython3.7-minimal_3.7.6-1+b1 libpython3.7-stdlib_3.7.6-1+b1 libpython3.8_3.8.1-2+b1 libpython3.8-dev_3.8.1-2+b1 libpython3.8-minimal_3.8.1-2+b1 libpython3.8-stdlib_3.8.1-2+b1 libreadline8_8.0-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2+rpi1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.31.0+really3.30.1+fossil191229-1 libss2_1.45.5-2 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.2.1-25+rpi1 libstdc++6_9.2.1-25+rpi1 libsub-override-perl_0.09-2 libsystemd0_244.1-1+rpi1 libtasn1-6_4.15.0-2 libtcl8.6_8.6.10+dfsg-1 libtext-charwidth-perl_0.04-10 libtext-iconv-perl_1.7-7 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtk8.6_8.6.10-1 libtool_2.4.6-11 libubsan1_9.2.1-25+rpi1 libuchardet0_0.0.6-3 libudev1_244.1-1+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libx11-6_2:1.6.8-1 libx11-data_2:1.6.8-1 libxau6_1:1.0.8-1+b2 libxcb1_1.13.1-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-8 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libzstd1_1.4.4+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8-1 logsave_1.45.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.4.20200120-1 mime-support_3.64 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_6.0 passwd_1:4.8-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pigz_2.4-1 pinentry-curses_1.1.0-3 po-debconf_1.0.21 python-matplotlib-data_3.1.2-1 python3_3.7.5-3 python3-all_3.7.5-3 python3-all-dev_3.7.5-3 python3-cutadapt_2.8-1 python3-cycler_0.10.0-2 python3-dateutil_2.7.3-3 python3-decorator_4.3.0-1.1 python3-dev_3.7.5-3 python3-distutils_3.8.0-1 python3-dnaio_0.4.1-2 python3-kiwisolver_1.0.1-2+b2 python3-lib2to3_3.8.0-1 python3-matplotlib_3.1.2-1+b1 python3-minimal_3.7.5-3 python3-nose_1.3.7-4 python3-numpy_1:1.17.4-5+b1 python3-pandas_0.25.3+dfsg-4 python3-pandas-lib_0.25.3+dfsg-4 python3-pkg-resources_44.0.0-1 python3-pyparsing_2.4.2-1 python3-pysam_0.15.4+ds-1 python3-scipy_1.3.3-3+b1 python3-seaborn_0.9.0-2 python3-setuptools_44.0.0-1 python3-six_1.14.0-2 python3-tk_3.8.0-1 python3-tz_2019.3-1 python3-xopen_0.8.4-1 python3.7_3.7.6-1+b1 python3.7-dev_3.7.6-1+b1 python3.7-minimal_3.7.6-1+b1 python3.8_3.8.1-2+b1 python3.8-dev_3.8.1-2+b1 python3.8-minimal_3.8.1-2+b1 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-sqt-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6 tk8.6-blt2.5_2.5.3+dfsg-4 ttf-bitstream-vera_1.10-8 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 x11-common_1:7.7+20 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1.2 zlib1g-dev_1:1.2.11.dfsg-1.2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Feb 5 08:49:50 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-sqt_0.8.0-4.dsc
dpkg-source: info: extracting python-sqt in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-sqt_0.8.0.orig.tar.gz
dpkg-source: info: unpacking python-sqt_0.8.0-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fixme_ignore_failing_test.patch
dpkg-source: info: applying fixme_ignore_failing_test2.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-c196dc01-15f1-45be-b092-263288f6b6b2
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-sqt
dpkg-buildpackage: info: source version 0.8.0-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from python-sqt-0.8.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
fakeroot debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
pybuild --clean --test-nose -i python{version} -p "3.8 3.7"
I: pybuild base:217: python3.8 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.8' does not exist -- can't clean it
I: pybuild base:217: python3.7 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
rm -rf .pybuild/
find . -name \*.pyc -exec rm {} \;
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/python3-sqt.substvars debian/files
rm -fr -- debian/python3-sqt/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules build-arch
dh build-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
pybuild --configure --test-nose -i python{version} -p "3.8 3.7"
I: pybuild base:217: python3.8 setup.py config
running config
I: pybuild base:217: python3.7 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
pybuild --build --test-nose -i python{version} -p "3.8 3.7"
I: pybuild base:217: /usr/bin/python3.8 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt
copying sqt/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt
copying sqt/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt
copying sqt/_codons.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt
copying sqt/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt
copying sqt/align.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt
copying sqt/ansicolor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt
copying sqt/args.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt
copying sqt/cigar.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt
copying sqt/colorspace.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt
copying sqt/compat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt
copying sqt/dna.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt
copying sqt/intervaltree.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt
copying sqt/math.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt
copying sqt/qualtrim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt
copying sqt/reads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt
copying sqt/region.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt
copying sqt/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/io
copying sqt/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/io
copying sqt/io/bam.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/io
copying sqt/io/fasta.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/io
copying sqt/io/gtf.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/io
copying sqt/io/sff.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/addadapt.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/align.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/bam2fastq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/bameof.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/bamstats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/chars.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/checkfastqpe.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/checkvcfref.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/compare_sequences.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/coverage.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/cutvect.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/fastaextract.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/fastagrep.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/fastastats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/fastxmod.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/fixbam64.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/histogram.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/mutate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/qgramfreq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/qualityguess.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/randomseq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/readcov.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/readlenhisto.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/samfixn.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/samsetop.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/simreads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
copying sqt/commands/translate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands
UPDATING /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/_version.py
set /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/_version.py to '0.8.0'
running build_ext
Compiling sqt/_helpers.pyx because it changed.
[1/1] Cythonizing sqt/_helpers.pyx
building 'sqt._helpers' extension
creating build
creating build/temp.linux-armhf-3.8
creating build/temp.linux-armhf-3.8/sqt
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c sqt/_helpers.c -o build/temp.linux-armhf-3.8/sqt/_helpers.o
sqt/_helpers.c: In function ‘__pyx_pf_3sqt_8_helpers_12nt_to_aa’:
sqt/_helpers.c:6531:51: warning: array subscript has type ‘char’ [-Wchar-subscripts]
6531 | __pyx_v_nt0 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[__pyx_v_i])]);
| ~~~~~~~~~~^~~~~~~~~~~~
sqt/_helpers.c:6540:51: warning: array subscript has type ‘char’ [-Wchar-subscripts]
6540 | __pyx_v_nt1 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[(__pyx_v_i + 1)])]);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
sqt/_helpers.c:6549:51: warning: array subscript has type ‘char’ [-Wchar-subscripts]
6549 | __pyx_v_nt2 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[(__pyx_v_i + 2)])]);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/sqt/_helpers.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/_helpers.cpython-38-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/sqt/_helpers.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
I: pybuild base:217: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt
copying sqt/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt
copying sqt/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt
copying sqt/_codons.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt
copying sqt/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt
copying sqt/align.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt
copying sqt/ansicolor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt
copying sqt/args.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt
copying sqt/cigar.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt
copying sqt/colorspace.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt
copying sqt/compat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt
copying sqt/dna.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt
copying sqt/intervaltree.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt
copying sqt/math.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt
copying sqt/qualtrim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt
copying sqt/reads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt
copying sqt/region.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt
copying sqt/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/io
copying sqt/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/io
copying sqt/io/bam.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/io
copying sqt/io/fasta.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/io
copying sqt/io/gtf.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/io
copying sqt/io/sff.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/addadapt.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/align.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/bam2fastq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/bameof.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/bamstats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/chars.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/checkfastqpe.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/checkvcfref.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/compare_sequences.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/coverage.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/cutvect.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/fastaextract.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/fastagrep.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/fastastats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/fastxmod.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/fixbam64.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/histogram.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/mutate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/qgramfreq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/qualityguess.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/randomseq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/readcov.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/readlenhisto.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/samfixn.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/samsetop.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/simreads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
copying sqt/commands/translate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands
UPDATING /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/_version.py
set /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/_version.py to '0.8.0'
running build_ext
building 'sqt._helpers' extension
creating build/temp.linux-armhf-3.7
creating build/temp.linux-armhf-3.7/sqt
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c sqt/_helpers.c -o build/temp.linux-armhf-3.7/sqt/_helpers.o
sqt/_helpers.c: In function ‘__pyx_pf_3sqt_8_helpers_12nt_to_aa’:
sqt/_helpers.c:6531:51: warning: array subscript has type ‘char’ [-Wchar-subscripts]
6531 | __pyx_v_nt0 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[__pyx_v_i])]);
| ~~~~~~~~~~^~~~~~~~~~~~
sqt/_helpers.c:6540:51: warning: array subscript has type ‘char’ [-Wchar-subscripts]
6540 | __pyx_v_nt1 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[(__pyx_v_i + 1)])]);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
sqt/_helpers.c:6549:51: warning: array subscript has type ‘char’ [-Wchar-subscripts]
6549 | __pyx_v_nt2 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[(__pyx_v_i + 2)])]);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/sqt/_helpers.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/_helpers.cpython-37m-arm-linux-gnueabihf.so
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
LC_ALL=C.UTF-8 dh_auto_test
pybuild --test --test-nose -i python{version} -p "3.8 3.7"
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build; python3.8 -m nose -v tests
tests.testalign.test_edit_distance ... ok
tests.testalign.test_edit_distance_bytes ... ok
tests.testalign.test_edit_distance_banded ... ok
tests.testalign.test_global_alignment ... ok
tests.testalign.test_consensus ... ok
tests.testalign.test_hamming_distance ... ok
tests.testalign.test_hamming_distance_incorrect_length ... ok
tests.testcigar.test_parse ... ok
tests.testcigar.test_cigar_class ... ok
tests.testcigar.test_parse_error_1 ... ok
tests.testcigar.test_parse_error_2 ... ok
tests.testcigar.test_parse_error_3 ... ok
tests.testcigar.test_elements ... ok
tests.testcigar.test_length ... ok
tests.testcigar.test_concat ... ok
tests.testcigar.test_split_at_element ... ok
tests.testcigar.test_reference_to_query_position ... ok
tests.testcigar.test_clipping ... ok
tests.testcolorspace.test_encode ... ok
tests.testcolorspace.test_decode ... ok
tests.testdna.test_complement_string ... ok
tests.testdna.test_complement_bytes ... ok
tests.testdna.test_n_intervals ... ok
tests.testdna.test_intervals_complement ... ok
tests.testdna.test_amino_acid_regex ... ok
tests.testdna.test_nt_to_aa ... ok
tests.testfasta.test_fastqwriter ... ok
tests.testfasta.test_fastqwriter_twoheaders ... ok
tests.testfasta.test_fastawriter ... ok
tests.testfasta.test_fastawriter_linelength ... ok
tests.testfasta.test_fastawriter_sequence ... ok
tests.testfasta.test_fastawriter_contextmanager ... ok
tests.testfasta.test_fastareader ... ok
tests.testfasta.test_fastareader_upper ... ok
tests.testfasta.test_fastareader_lower ... ok
tests.testfasta.test_fastareader_binary ... ok
tests.testfasta.test_sequence_reader ... ok
tests.testfasta.test_fastareader_contextmanager ... ok
tests.testfasta.test_fastq_header ... ok
tests.testindexedfasta.test_indexedfasta_contextmanager ... ok
tests.testindexedfasta.test_indexedfasta ... ok
tests.testindexedfasta.test_all_regions ... ok
tests.testintervaltree.test_intervaltree ... ok
tests.testmedian.test_median ... ok
tests.testregion.test_region ... ok
----------------------------------------------------------------------
Ran 45 tests in 88.191s
OK
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build; python3.7 -m nose -v tests
tests.testalign.test_edit_distance ... ok
tests.testalign.test_edit_distance_bytes ... ok
tests.testalign.test_edit_distance_banded ... ok
tests.testalign.test_global_alignment ... ok
tests.testalign.test_consensus ... ok
tests.testalign.test_hamming_distance ... ok
tests.testalign.test_hamming_distance_incorrect_length ... ok
tests.testcigar.test_parse ... ok
tests.testcigar.test_cigar_class ... ok
tests.testcigar.test_parse_error_1 ... ok
tests.testcigar.test_parse_error_2 ... ok
tests.testcigar.test_parse_error_3 ... ok
tests.testcigar.test_elements ... ok
tests.testcigar.test_length ... ok
tests.testcigar.test_concat ... ok
tests.testcigar.test_split_at_element ... ok
tests.testcigar.test_reference_to_query_position ... ok
tests.testcigar.test_clipping ... ok
tests.testcolorspace.test_encode ... ok
tests.testcolorspace.test_decode ... ok
tests.testdna.test_complement_string ... ok
tests.testdna.test_complement_bytes ... ok
tests.testdna.test_n_intervals ... ok
tests.testdna.test_intervals_complement ... ok
tests.testdna.test_amino_acid_regex ... ok
tests.testdna.test_nt_to_aa ... ok
tests.testfasta.test_fastqwriter ... ok
tests.testfasta.test_fastqwriter_twoheaders ... ok
tests.testfasta.test_fastawriter ... ok
tests.testfasta.test_fastawriter_linelength ... ok
tests.testfasta.test_fastawriter_sequence ... ok
tests.testfasta.test_fastawriter_contextmanager ... ok
tests.testfasta.test_fastareader ... ok
tests.testfasta.test_fastareader_upper ... ok
tests.testfasta.test_fastareader_lower ... ok
tests.testfasta.test_fastareader_binary ... ok
tests.testfasta.test_sequence_reader ... ok
tests.testfasta.test_fastareader_contextmanager ... ok
tests.testfasta.test_fastq_header ... ok
tests.testindexedfasta.test_indexedfasta_contextmanager ... ok
tests.testindexedfasta.test_indexedfasta ... ok
tests.testindexedfasta.test_all_regions ... ok
tests.testintervaltree.test_intervaltree ... ok
tests.testmedian.test_median ... ok
tests.testregion.test_region ... ok
----------------------------------------------------------------------
Ran 45 tests in 91.226s
OK
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
rm -f -- debian/python3-sqt.substvars
rm -fr -- debian/.debhelper/generated/python3-sqt/ debian/python3-sqt/ debian/tmp/
dh_auto_install -a -O--buildsystem=pybuild
install -d /<<PKGBUILDDIR>>/debian/python3-sqt
pybuild --install --test-nose -i python{version} -p "3.8 3.7" --dest-dir /<<PKGBUILDDIR>>/debian/python3-sqt
I: pybuild base:217: /usr/bin/python3.8 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-sqt
running install
running build
running build_py
UPDATING /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/_version.py
set /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/_version.py to '0.8.0'
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/__main__.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/_codons.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/align.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/ansicolor.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/args.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/cigar.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/colorspace.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/compat.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/dna.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/intervaltree.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/math.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/qualtrim.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/reads.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/region.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/utils.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/io/bam.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/io/fasta.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/io/gtf.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/io/sff.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/io
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/io/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/io/__pycache__/fasta.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/io/__pycache__/gtf.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/io/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/addadapt.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/align.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/bam2fastq.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/bameof.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/bamstats.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/chars.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/checkfastqpe.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/checkvcfref.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/compare_sequences.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/coverage.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/cutvect.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/fastaextract.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/fastagrep.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/fastastats.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/fastxmod.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/fixbam64.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/histogram.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/mutate.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/qgramfreq.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/qualityguess.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/randomseq.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/readcov.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/readlenhisto.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/samfixn.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/samsetop.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/simreads.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/commands/translate.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/_helpers.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/__pycache__/_version.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/__pycache__/args.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/__pycache__/compat.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/__pycache__/_codons.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/__pycache__/cigar.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/__pycache__/align.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/__pycache__/utils.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/__pycache__/colorspace.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/__pycache__/dna.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/__pycache__/intervaltree.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/__pycache__/math.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/__pycache__/region.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_sqt/build/sqt/_version.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/__main__.py to __main__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/_codons.py to _codons.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/align.py to align.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/ansicolor.py to ansicolor.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/args.py to args.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/cigar.py to cigar.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/colorspace.py to colorspace.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/compat.py to compat.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/dna.py to dna.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/intervaltree.py to intervaltree.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/math.py to math.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/qualtrim.py to qualtrim.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/reads.py to reads.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/region.py to region.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/utils.py to utils.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/io/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/io/bam.py to bam.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/io/fasta.py to fasta.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/io/gtf.py to gtf.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/io/sff.py to sff.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/addadapt.py to addadapt.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/align.py to align.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/bam2fastq.py to bam2fastq.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/bameof.py to bameof.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/bamstats.py to bamstats.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/chars.py to chars.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/checkfastqpe.py to checkfastqpe.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/checkvcfref.py to checkvcfref.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/compare_sequences.py to compare_sequences.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/coverage.py to coverage.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/cutvect.py to cutvect.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/fastaextract.py to fastaextract.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/fastagrep.py to fastagrep.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/fastastats.py to fastastats.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/fastxmod.py to fastxmod.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/fixbam64.py to fixbam64.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/histogram.py to histogram.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/mutate.py to mutate.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/qgramfreq.py to qgramfreq.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/qualityguess.py to qualityguess.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/randomseq.py to randomseq.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/readcov.py to readcov.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/readlenhisto.py to readlenhisto.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/samfixn.py to samfixn.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/samsetop.py to samsetop.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/simreads.py to simreads.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/commands/translate.py to translate.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt/_version.py to _version.cpython-38.pyc
running install_egg_info
running egg_info
creating sqt.egg-info
writing sqt.egg-info/PKG-INFO
writing dependency_links to sqt.egg-info/dependency_links.txt
writing entry points to sqt.egg-info/entry_points.txt
writing requirements to sqt.egg-info/requires.txt
writing top-level names to sqt.egg-info/top_level.txt
writing manifest file 'sqt.egg-info/SOURCES.txt'
reading manifest file 'sqt.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'sqt.egg-info/SOURCES.txt'
Copying sqt.egg-info to /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.8/dist-packages/sqt-0.8.0.egg-info
Skipping SOURCES.txt
running install_scripts
Installing sqt script to /<<PKGBUILDDIR>>/debian/python3-sqt/usr/bin
I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-sqt
running install
running build
running build_py
UPDATING /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/_version.py
set /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/_version.py to '0.8.0'
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/__main__.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/_codons.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/align.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/ansicolor.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/args.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/cigar.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/colorspace.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/compat.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/dna.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/intervaltree.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/math.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/qualtrim.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/reads.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/region.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/utils.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/io/bam.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/io/fasta.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/io/gtf.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/io/sff.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/io
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/io/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/io/__pycache__/fasta.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/io/__pycache__/gtf.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/io/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/addadapt.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/align.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/bam2fastq.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/bameof.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/bamstats.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/chars.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/checkfastqpe.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/checkvcfref.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/compare_sequences.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/coverage.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/cutvect.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/fastaextract.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/fastagrep.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/fastastats.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/fastxmod.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/fixbam64.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/histogram.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/mutate.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/qgramfreq.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/qualityguess.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/randomseq.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/readcov.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/readlenhisto.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/samfixn.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/samsetop.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/simreads.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/commands/translate.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/_helpers.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/__pycache__/_version.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/__pycache__/args.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/__pycache__/compat.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/__pycache__/_codons.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/__pycache__/cigar.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/__pycache__/align.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/__pycache__/utils.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/__pycache__/colorspace.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/__pycache__/dna.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/__pycache__/intervaltree.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/__pycache__/math.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/__pycache__/region.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_sqt/build/sqt/_version.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/__main__.py to __main__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/_codons.py to _codons.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/align.py to align.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/ansicolor.py to ansicolor.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/args.py to args.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/cigar.py to cigar.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/colorspace.py to colorspace.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/compat.py to compat.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/dna.py to dna.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/intervaltree.py to intervaltree.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/math.py to math.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/qualtrim.py to qualtrim.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/reads.py to reads.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/region.py to region.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/utils.py to utils.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/io/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/io/bam.py to bam.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/io/fasta.py to fasta.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/io/gtf.py to gtf.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/io/sff.py to sff.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/addadapt.py to addadapt.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/align.py to align.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/bam2fastq.py to bam2fastq.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/bameof.py to bameof.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/bamstats.py to bamstats.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/chars.py to chars.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/checkfastqpe.py to checkfastqpe.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/checkvcfref.py to checkvcfref.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/compare_sequences.py to compare_sequences.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/coverage.py to coverage.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/cutvect.py to cutvect.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/fastaextract.py to fastaextract.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/fastagrep.py to fastagrep.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/fastastats.py to fastastats.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/fastxmod.py to fastxmod.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/fixbam64.py to fixbam64.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/histogram.py to histogram.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/mutate.py to mutate.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/qgramfreq.py to qgramfreq.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/qualityguess.py to qualityguess.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/randomseq.py to randomseq.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/readcov.py to readcov.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/readlenhisto.py to readlenhisto.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/samfixn.py to samfixn.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/samsetop.py to samsetop.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/simreads.py to simreads.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/commands/translate.py to translate.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt/_version.py to _version.cpython-37.pyc
running install_egg_info
running egg_info
writing sqt.egg-info/PKG-INFO
writing dependency_links to sqt.egg-info/dependency_links.txt
writing entry points to sqt.egg-info/entry_points.txt
writing requirements to sqt.egg-info/requires.txt
writing top-level names to sqt.egg-info/top_level.txt
reading manifest file 'sqt.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'sqt.egg-info/SOURCES.txt'
Copying sqt.egg-info to /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.7/dist-packages/sqt-0.8.0.egg-info
Skipping SOURCES.txt
running install_scripts
Installing sqt script to /<<PKGBUILDDIR>>/debian/python3-sqt/usr/bin
dh_installdocs -a -O--buildsystem=pybuild
install -d debian/python3-sqt/usr/share/doc/python3-sqt
install -d debian/.debhelper/generated/python3-sqt
install -p -m0644 debian/README.Debian debian/python3-sqt/usr/share/doc/python3-sqt/README.Debian
install -p -m0644 debian/copyright debian/python3-sqt/usr/share/doc/python3-sqt/copyright
dh_installchangelogs -a -O--buildsystem=pybuild
install -p -m0644 debian/changelog debian/python3-sqt/usr/share/doc/python3-sqt/changelog.Debian
dh_installman -a -O--buildsystem=pybuild
install -d debian/python3-sqt/usr/share/man/man1/
install -p -m0644 ./debian/sqt.1 debian/python3-sqt/usr/share/man/man1/sqt.1
man-recode --to-code UTF-8 --suffix .dh-new debian/python3-sqt/usr/share/man/man1/sqt.1
mv debian/python3-sqt/usr/share/man/man1/sqt.1.dh-new debian/python3-sqt/usr/share/man/man1/sqt.1
chmod 0644 -- debian/python3-sqt/usr/share/man/man1/sqt.1
dh_python3 -a -O--buildsystem=pybuild
D: dh_python3 dh_python3:161: version: 4.20191017
D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild']
D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': True, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'}
D: dh_python3 dh_python3:164: args: []
D: dh_python3 dh_python3:166: supported Python versions: 3.7,3.8 (default=3.7)
D: dh_python3 debhelper:153: source=python-sqt, binary packages=['python3-sqt']
D: dh_python3 dh_python3:183: processing package python3-sqt...
D: dh_python3 fs:49: moving files from debian/python3-sqt/usr/lib/python3.7/dist-packages to debian/python3-sqt/usr/lib/python3/dist-packages/
D: dh_python3 tools:232: invoking: /usr/bin/python3.7 -c 'import sysconfig as s;print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))'
D: dh_python3 fs:49: moving files from debian/python3-sqt/usr/lib/python3.8/dist-packages to debian/python3-sqt/usr/lib/python3/dist-packages/
D: dh_python3 tools:232: invoking: /usr/bin/python3.8 -c 'import sysconfig as s;print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))'
D: dh_python3 fs:260: package python3-sqt details = {'requires.txt': {'debian/python3-sqt/usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.7'), Version('3.8')}, 'ext_no_version': set()}
D: dh_python3 depends:117: generating dependencies for package python3-sqt
D: dh_python3 pydist:138: trying to find dependency for cutadapt (python=None)
D: dh_python3 pydist:138: trying to find dependency for matplotlib (python=None)
D: dh_python3 pydist:138: trying to find dependency for pysam!=0.9.0 (python=None)
D: dh_python3 pydist:138: trying to find dependency for seaborn (python=None)
D: dh_python3 pydist:138: trying to find dependency for xopen (python=None)
D: dh_python3 depends:275: D={'python3:any', 'python3-pysam', 'python3-xopen', 'python3 (<< 3.9)', 'python3-cutadapt', 'python3-seaborn', 'python3-matplotlib', 'python3 (>= 3.7~)'}; R=[]; S=[]; E=[], B=[]; RT=[]
dh_installinit -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
cd debian/python3-sqt
chmod a-x usr/share/doc/python3-sqt/changelog.Debian usr/share/man/man1/sqt.1
gzip -9nf usr/share/doc/python3-sqt/changelog.Debian usr/share/man/man1/sqt.1
cd '/<<PKGBUILDDIR>>'
dh_fixperms -a -O--buildsystem=pybuild
find debian/python3-sqt -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/python3-sqt ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/python3-sqt/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-sqt/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-sqt/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/python3-sqt/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-sqt -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-sqt/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
find debian/python3-sqt/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
install -d debian/python3-sqt/usr/lib/debug/.dwz/arm-linux-gnueabihf
dwz -mdebian/python3-sqt/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-sqt.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-sqt.debug -- debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-37m-arm-linux-gnueabihf.so debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-38-arm-linux-gnueabihf.so
objcopy --compress-debug-sections debian/python3-sqt/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-sqt.debug
dh_strip -a -O--buildsystem=pybuild
install -d debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/3a
objcopy --only-keep-debug --compress-debug-sections debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-37m-arm-linux-gnueabihf.so debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/3a/92681cd2e5381751e65f8004f98822e8a482d6.debug
chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/3a/92681cd2e5381751e65f8004f98822e8a482d6.debug
chown 0:0 -- debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/3a/92681cd2e5381751e65f8004f98822e8a482d6.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-37m-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/3a/92681cd2e5381751e65f8004f98822e8a482d6.debug debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-37m-arm-linux-gnueabihf.so
install -d debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/05
objcopy --only-keep-debug --compress-debug-sections debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-38-arm-linux-gnueabihf.so debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/05/49f8d877b409f063a87e0af7383c02354f4f8d.debug
chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/05/49f8d877b409f063a87e0af7383c02354f4f8d.debug
chown 0:0 -- debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/05/49f8d877b409f063a87e0af7383c02354f4f8d.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-38-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/05/49f8d877b409f063a87e0af7383c02354f4f8d.debug debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-38-arm-linux-gnueabihf.so
install -d debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.dwz
cp --reflink=auto -a debian/python3-sqt/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.dwz
rm -fr debian/python3-sqt/usr/lib/debug/.dwz
rmdir -p --ignore-fail-on-non-empty debian/python3-sqt/usr/lib/debug
install -d debian/.debhelper/python3-sqt/dbgsym-root/usr/share/doc
ln -s python3-sqt debian/.debhelper/python3-sqt/dbgsym-root/usr/share/doc/python3-sqt-dbgsym
dh_makeshlibs -a -O--buildsystem=pybuild
rm -f debian/python3-sqt/DEBIAN/shlibs
dh_shlibdeps -a -O--buildsystem=pybuild
install -d debian/python3-sqt/DEBIAN
dpkg-shlibdeps -Tdebian/python3-sqt.substvars debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-37m-arm-linux-gnueabihf.so debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-38-arm-linux-gnueabihf.so
dh_installdeb -a -O--buildsystem=pybuild
printf '#!/bin/sh\nset -e\n' > debian/python3-sqt/DEBIAN/postinst
cat debian/python3-sqt.postinst.debhelper >> debian/python3-sqt/DEBIAN/postinst
chmod 0755 -- debian/python3-sqt/DEBIAN/postinst
chown 0:0 -- debian/python3-sqt/DEBIAN/postinst
printf '#!/bin/sh\nset -e\n' > debian/python3-sqt/DEBIAN/prerm
cat debian/python3-sqt.prerm.debhelper >> debian/python3-sqt/DEBIAN/prerm
chmod 0755 -- debian/python3-sqt/DEBIAN/prerm
chown 0:0 -- debian/python3-sqt/DEBIAN/prerm
dh_gencontrol -a -O--buildsystem=pybuild
echo misc:Depends= >> debian/python3-sqt.substvars
echo misc:Pre-Depends= >> debian/python3-sqt.substvars
install -d debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN
dpkg-gencontrol -ppython3-sqt -ldebian/changelog -Tdebian/python3-sqt.substvars -Pdebian/.debhelper/python3-sqt/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -DPackage=python3-sqt-dbgsym "-DDepends=python3-sqt (= \${binary:Version})" "-DDescription=debug symbols for python3-sqt" "-DBuild-Ids=0549f8d877b409f063a87e0af7383c02354f4f8d 3a92681cd2e5381751e65f8004f98822e8a482d6" -DSection=debug -UMulti-Arch -UReplaces -UBreaks
dpkg-gencontrol: warning: package python3-sqt: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-sqt: substitution variable ${python3:Versions} unused, but is defined
chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN/control
chown 0:0 -- debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN/control
dpkg-gencontrol -ppython3-sqt -ldebian/changelog -Tdebian/python3-sqt.substvars -Pdebian/python3-sqt -UMulti-Arch
dpkg-gencontrol: warning: package python3-sqt: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-sqt: substitution variable ${python3:Versions} unused, but is defined
chmod 0644 -- debian/python3-sqt/DEBIAN/control
chown 0:0 -- debian/python3-sqt/DEBIAN/control
dh_md5sums -a -O--buildsystem=pybuild
cd debian/python3-sqt >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/python3-sqt/DEBIAN/md5sums
chown 0:0 -- debian/python3-sqt/DEBIAN/md5sums
cd debian/.debhelper/python3-sqt/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN/md5sums
chown 0:0 -- debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN/md5sums
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb --build debian/python3-sqt ..
dpkg-deb --build debian/.debhelper/python3-sqt/dbgsym-root ..
dpkg-deb: building package 'python3-sqt' in '../python3-sqt_0.8.0-4_armhf.deb'.
dpkg-deb: building package 'python3-sqt-dbgsym' in '../python3-sqt-dbgsym_0.8.0-4_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../python-sqt_0.8.0-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-source: info: using options from python-sqt-0.8.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-02-10T06:06:00Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-sqt_0.8.0-4_armhf.changes:
---------------------------------
Format: 1.8
Date: Wed, 05 Feb 2020 09:40:37 +0100
Source: python-sqt
Binary: python3-sqt python3-sqt-dbgsym
Architecture: armhf
Version: 0.8.0-4
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
python3-sqt - SeQuencing Tools for biological DNA/RNA high-throughput data
Closes: 950622
Changes:
python-sqt (0.8.0-4) unstable; urgency=medium
.
* Team upload.
* Fix Build-Depends
Closes: #950622
* Use <!nocheck> instead of comment
* Standards-Version: 4.5.0 (routine-update)
* debhelper-compat 12 (routine-update)
Checksums-Sha1:
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8c39c6338ccc5e64518d36f5bc051ea2c6e7d9aa 620424 python3-sqt-dbgsym_0.8.0-4_armhf.deb
66d5388590a216535ffd4dc89257f23fee7f6f3a 158632 python3-sqt_0.8.0-4_armhf.deb
Checksums-Sha256:
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fbbb2adbc96b6db7acdabc1fb185158e3822206ad54d2cf73ba726c3e15a5722 620424 python3-sqt-dbgsym_0.8.0-4_armhf.deb
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Files:
7122c232dec282b0ea3796ce2594b2b1 8002 science optional python-sqt_0.8.0-4_armhf.buildinfo
1a26e6362e2657318f3ce8773dff864c 620424 debug optional python3-sqt-dbgsym_0.8.0-4_armhf.deb
4535300c73e96af04eaead5d7f35e15f 158632 python optional python3-sqt_0.8.0-4_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-sqt-dbgsym_0.8.0-4_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 620424 bytes: control archive=648 bytes.
426 bytes, 12 lines control
303 bytes, 3 lines md5sums
Package: python3-sqt-dbgsym
Source: python-sqt
Version: 0.8.0-4
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 681
Depends: python3-sqt (= 0.8.0-4)
Section: debug
Priority: optional
Description: debug symbols for python3-sqt
Build-Ids: 0549f8d877b409f063a87e0af7383c02354f4f8d 3a92681cd2e5381751e65f8004f98822e8a482d6
drwxr-xr-x root/root 0 2020-02-05 08:40 ./
drwxr-xr-x root/root 0 2020-02-05 08:40 ./usr/
drwxr-xr-x root/root 0 2020-02-05 08:40 ./usr/lib/
drwxr-xr-x root/root 0 2020-02-05 08:40 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-02-05 08:40 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-02-05 08:40 ./usr/lib/debug/.build-id/05/
-rw-r--r-- root/root 355104 2020-02-05 08:40 ./usr/lib/debug/.build-id/05/49f8d877b409f063a87e0af7383c02354f4f8d.debug
drwxr-xr-x root/root 0 2020-02-05 08:40 ./usr/lib/debug/.build-id/3a/
-rw-r--r-- root/root 314116 2020-02-05 08:40 ./usr/lib/debug/.build-id/3a/92681cd2e5381751e65f8004f98822e8a482d6.debug
drwxr-xr-x root/root 0 2020-02-05 08:40 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2020-02-05 08:40 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 13372 2020-02-05 08:40 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-sqt.debug
drwxr-xr-x root/root 0 2020-02-05 08:40 ./usr/share/
drwxr-xr-x root/root 0 2020-02-05 08:40 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-02-05 08:40 ./usr/share/doc/python3-sqt-dbgsym -> python3-sqt
python3-sqt_0.8.0-4_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 158632 bytes: control archive=3360 bytes.
2212 bytes, 46 lines control
5293 bytes, 62 lines md5sums
248 bytes, 12 lines * postinst #!/bin/sh
397 bytes, 12 lines * prerm #!/bin/sh
Package: python3-sqt
Source: python-sqt
Version: 0.8.0-4
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 608
Depends: libc6 (>= 2.4), python3 (<< 3.9), python3 (>= 3.7~), python3-cutadapt, python3-matplotlib, python3-pysam, python3-seaborn, python3-xopen, python3:any
Recommends: fonts-noto-color-emoji
Section: python
Priority: optional
Homepage: https://bitbucket.org/marcelm/sqt
Description: SeQuencing Tools for biological DNA/RNA high-throughput data
sqt is a collection of command-line tools for working with
high-throughput sequencing data. Conceptionally not fixed to use any
particular language, many sqt subcommands are currently implemented
in Python. For them, a Python package is available with functions for
reading and writing FASTA/FASTQ files, computing alignments, quality
trimming, etc.
.
The following tools are offered:
* sqt-coverage -- Compute per-reference statistics such as coverage
and GC content
* sqt-fastqmod -- FASTQ modifications: shorten, subset, reverse
complement, quality trimming.
* sqt-fastastats -- Compute N50, min/max length, GC content etc. of
a FASTA file
* sqt-qualityguess -- Guess quality encoding of one or more FASTA files.
* sqt-globalalign -- Compute a global or semiglobal alignment of two strings.
* sqt-chars -- Count length of the first word given on the command line.
* sqt-sam-cscq -- Add the CS and CQ tags to a SAM file with colorspace reads.
* sqt-fastamutate -- Add substitutions and indels to sequences in a
FASTA file.
* sqt-fastaextract -- Efficiently extract one or more regions from an
indexed FASTA file.
* sqt-translate -- Replace characters in FASTA files (like the 'tr'
command).
* sqt-sam-fixn -- Replace all non-ACGT characters within reads in a
SAM file.
* sqt-sam-insertsize -- Mean and standard deviation of paired-end
insert sizes.
* sqt-sam-set-op -- Set operations (union, intersection, ...) on
SAM/BAM files.
* sqt-bam-eof -- Check for the End-Of-File marker in compressed
BAM files.
* sqt-checkfastqpe -- Check whether two FASTQ files contain correctly
paired paired-end data.
drwxr-xr-x root/root 0 2020-02-05 08:40 ./
drwxr-xr-x root/root 0 2020-02-05 08:40 ./usr/
drwxr-xr-x root/root 0 2020-02-05 08:40 ./usr/bin/
-rwxr-xr-x root/root 362 2020-02-05 08:40 ./usr/bin/sqt
drwxr-xr-x root/root 0 2020-02-05 08:40 ./usr/lib/
drwxr-xr-x root/root 0 2020-02-05 08:40 ./usr/lib/python3/
drwxr-xr-x root/root 0 2020-02-05 08:40 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2020-02-05 08:40 ./usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/
-rw-r--r-- root/root 618 2020-02-05 08:40 ./usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2020-02-05 08:40 ./usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/dependency_links.txt
-rw-r--r-- root/root 43 2020-02-05 08:40 ./usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/entry_points.txt
-rw-r--r-- root/root 0 2020-02-05 08:40 ./usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/requires.txt
-rw-r--r-- root/root 4 2020-02-05 08:40 ./usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/top_level.txt
drwxr-xr-x root/root 0 2020-02-05 08:40 ./usr/lib/python3/dist-packages/sqt/
-rw-r--r-- root/root 360 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/__init__.py
-rw-r--r-- root/root 1401 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/__main__.py
-rw-r--r-- root/root 855 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/_codons.py
-rw-r--r-- root/root 206844 2020-02-05 08:40 ./usr/lib/python3/dist-packages/sqt/_helpers.cpython-37m-arm-linux-gnueabihf.so
-rw-r--r-- root/root 198684 2020-02-05 08:40 ./usr/lib/python3/dist-packages/sqt/_helpers.cpython-38-arm-linux-gnueabihf.so
-rw-r--r-- root/root 471 2020-02-05 08:40 ./usr/lib/python3/dist-packages/sqt/_version.py
-rw-r--r-- root/root 6070 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/align.py
-rw-r--r-- root/root 1980 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/ansicolor.py
-rw-r--r-- root/root 516 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/args.py
-rw-r--r-- root/root 11249 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/cigar.py
-rw-r--r-- root/root 1812 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/colorspace.py
drwxr-xr-x root/root 0 2020-02-05 08:40 ./usr/lib/python3/dist-packages/sqt/commands/
-rw-r--r-- root/root 0 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/__init__.py
-rw-r--r-- root/root 2423 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/addadapt.py
-rw-r--r-- root/root 3535 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/align.py
-rw-r--r-- root/root 4560 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/bam2fastq.py
-rw-r--r-- root/root 1389 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/bameof.py
-rw-r--r-- root/root 7998 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/bamstats.py
-rw-r--r-- root/root 444 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/chars.py
-rw-r--r-- root/root 2183 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/checkfastqpe.py
-rw-r--r-- root/root 1261 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/checkvcfref.py
-rw-r--r-- root/root 4808 2016-12-01 16:12 ./usr/lib/python3/dist-packages/sqt/commands/compare_sequences.py
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| Summary |
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Build Architecture: armhf
Build-Space: 10444
Build-Time: 455
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 1148
Job: python-sqt_0.8.0-4
Machine Architecture: armhf
Package: python-sqt
Package-Time: 1654
Source-Version: 0.8.0-4
Space: 10444
Status: successful
Version: 0.8.0-4
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Finished at 2020-02-10T06:06:00Z
Build needed 00:27:34, 10444k disc space