Build log for python-sqt (0.8.0-4+b1) on armhf

python-sqt → 0.8.0-4+b1 → armhf → 2020-12-11 08:45:46

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testbuildd

+==============================================================================+
| python-sqt 0.8.0-4+b1 (armhf)                Fri, 11 Dec 2020 08:25:59 +0000 |
+==============================================================================+

Package: python-sqt
Version: 0.8.0-4+b1
Source Version: 0.8.0-4
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-3b8033ce-0515-4608-b114-0df03aa509cd' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [12.0 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.0 MB]
Fetched 24.9 MB in 28s (886 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'python-sqt' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-sqt.git
Please use:
git clone https://salsa.debian.org/med-team/python-sqt.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 124 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main python-sqt 0.8.0-4 (dsc) [2187 B]
Get:2 http://172.17.0.1/private bullseye-staging/main python-sqt 0.8.0-4 (tar) [116 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main python-sqt 0.8.0-4 (diff) [4960 B]
Fetched 124 kB in 0s (413 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-sqt-WHsbjr/python-sqt-0.8.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-sqt-WHsbjr' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-EzbVk5/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-EzbVk5/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-EzbVk5/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-EzbVk5/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-EzbVk5/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-EzbVk5/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-EzbVk5/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-EzbVk5/apt_archive ./ Packages [429 B]
Fetched 2105 B in 1s (2832 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  bsdextrautils krb5-locales libnss-nis libnss-nisplus netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-EzbVk5/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.7 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12738 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 12), dh-python, python3-all-dev, python3-setuptools, cython3, python3-nose, python3-cutadapt, python3-pysam, python3-seaborn, python3-xopen
Filtered Build-Depends: debhelper-compat (= 12), dh-python, python3-all-dev, python3-setuptools, cython3, python3-nose, python3-cutadapt, python3-pysam, python3-seaborn, python3-xopen
dpkg-deb: building package 'sbuild-build-depends-python-sqt-dummy' in '/<<BUILDDIR>>/resolver-EzbVk5/apt_archive/sbuild-build-depends-python-sqt-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-python-sqt-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-EzbVk5/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-EzbVk5/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-EzbVk5/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-EzbVk5/apt_archive ./ Sources [563 B]
Get:5 copy:/<<BUILDDIR>>/resolver-EzbVk5/apt_archive ./ Packages [629 B]
Fetched 2525 B in 1s (3386 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install python-sqt build dependencies (apt-based resolver)
----------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libnss-nis libnss-nisplus netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev blt ca-certificates cython3
  debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
  fontconfig-config fonts-lyx gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcroco3 libcurl3-gnutls
  libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev
  libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran5
  libglib2.0-0 libhts3 libicu67 libimagequant0 libjbig0 libjpeg62-turbo
  libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libmagic-mgc
  libmagic1 libnghttp2-14 libpipeline1 libpng16-16 libpsl5 libpython3-all-dev
  libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev
  libpython3.9-minimal libpython3.9-stdlib librtmp1 libsigsegv2 libssh2-1
  libsub-override-perl libtcl8.6 libtiff5 libtk8.6 libtool libuchardet0
  libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1
  libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 m4 mailcap man-db
  media-types mime-support node-jquery openssl pigz po-debconf
  python-matplotlib-data python3 python3-all python3-all-dev python3-certifi
  python3-cutadapt python3-cycler python3-dateutil python3-decorator
  python3-dev python3-distutils python3-dnaio python3-kiwisolver
  python3-lib2to3 python3-matplotlib python3-minimal python3-nose
  python3-numpy python3-pandas python3-pandas-lib python3-pil
  python3-pkg-resources python3-pyparsing python3-pysam python3-scipy
  python3-seaborn python3-setuptools python3-six python3-tk python3-tz
  python3-xopen python3.9 python3.9-dev python3.9-minimal tk8.6-blt2.5
  ttf-bitstream-vera ucf x11-common zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc blt-demo cython-doc dh-make
  gettext-doc libasprintf-dev libgettextpo-dev groff libjs-jquery-ui-docs
  liblcms2-utils tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler
  gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc
  python3-venv python-cycler-doc dvipng ffmpeg ghostscript gir1.2-gtk-3.0
  inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi
  python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip
  python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft
  python-nose-doc gfortran python-numpy-doc python3-pytest python3-numpy-dbg
  python-pandas-doc python3-statsmodels python-pil-doc python3-pil-dbg
  python-pyparsing-doc python-scipy-doc python-setuptools-doc tix
  python3-tk-dbg python3.9-venv python3.9-doc binfmt-support
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs javascript-common publicsuffix libltdl-dev libjs-sizzle
  libmail-sendmail-perl python3-bottleneck python3-numexpr python3-odf
  python3-openpyxl python3-xlrd python3-xlwt python3-bs4 python3-html5lib
  python3-lxml python3-tables python3-jinja2 python3-olefile python3-patsy
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev blt ca-certificates cython3
  debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
  fontconfig-config fonts-lyx gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcroco3 libcurl3-gnutls
  libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev
  libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran5
  libglib2.0-0 libhts3 libicu67 libimagequant0 libjbig0 libjpeg62-turbo
  libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libmagic-mgc
  libmagic1 libnghttp2-14 libpipeline1 libpng16-16 libpsl5 libpython3-all-dev
  libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev
  libpython3.9-minimal libpython3.9-stdlib librtmp1 libsigsegv2 libssh2-1
  libsub-override-perl libtcl8.6 libtiff5 libtk8.6 libtool libuchardet0
  libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1
  libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 m4 mailcap man-db
  media-types mime-support node-jquery openssl pigz po-debconf
  python-matplotlib-data python3 python3-all python3-all-dev python3-certifi
  python3-cutadapt python3-cycler python3-dateutil python3-decorator
  python3-dev python3-distutils python3-dnaio python3-kiwisolver
  python3-lib2to3 python3-matplotlib python3-minimal python3-nose
  python3-numpy python3-pandas python3-pandas-lib python3-pil
  python3-pkg-resources python3-pyparsing python3-pysam python3-scipy
  python3-seaborn python3-setuptools python3-six python3-tk python3-tz
  python3-xopen python3.9 python3.9-dev python3.9-minimal
  sbuild-build-depends-python-sqt-dummy tk8.6-blt2.5 ttf-bitstream-vera ucf
  x11-common zlib1g-dev
0 upgraded, 129 newly installed, 0 to remove and 0 not upgraded.
Need to get 73.5 MB of archives.
After this operation, 299 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-EzbVk5/apt_archive ./ sbuild-build-depends-python-sqt-dummy 0.invalid.0 [916 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf pigz armhf 2.4-1 [47.2 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-minimal armhf 3.9.1~rc1-2+rpi1 [789 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf python3.9-minimal armhf 3.9.1~rc1-2+rpi1 [1624 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.9.0-4 [37.8 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf media-types all 1.0.1 [18.2 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf mailcap all 3.67 [31.3 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-stdlib armhf 3.9.1~rc1-2+rpi1 [1653 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf python3.9 armhf 3.9.1~rc1-2+rpi1 [460 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.9.0-4 [21.0 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.9.0-4 [64.1 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libtcl8.6 armhf 8.6.10+dfsg-1 [886 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.2+dfsg-4 [345 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf ttf-bitstream-vera all 1.10-8 [352 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2 [135 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.12-1 [311 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.12-1 [700 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+21 [252 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libtk8.6 armhf 8.6.10-1 [678 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4 [468 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf blt armhf 2.5.3+dfsg-4 [14.8 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1h-1 [812 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20200601 [158 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.21-3+b1 [1234 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2.1 [188 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-1 [162 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.3-2 [1178 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-4 [8289 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.3 [580 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2.1 [1007 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.6-1 [78.4 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.6-1 [145 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20201102 [99.3 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf fonts-lyx all 2.3.6-1 [205 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.42.0-1 [66.7 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.72.0-1 [297 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.6-1 [47.4 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.10-1 [121 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.2.0-19+rpi1 [231 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libhts3 armhf 1.11-2 [318 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.5-1.1 [121 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf node-jquery all 3.5.1+dfsg+~3.5.4-3 [396 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.4-3 [3996 B]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-7 [232 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-9 [24.6 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf liblcms2-2 armhf 2.9-4 [119 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9 armhf 3.9.1~rc1-2+rpi1 [1412 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-dev armhf 3.9.1~rc1-2+rpi1 [3057 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.9.0-4 [21.2 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.9.0-4 [1068 B]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libwebpmux3 armhf 0.6.1-2 [94.2 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf python-matplotlib-data all 3.3.2-2 [4153 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.9.0-4 [1056 B]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf python3.9-dev armhf 3.9.1~rc1-2+rpi1 [501 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.9.0-4 [1164 B]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.9.0-4 [1060 B]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf python3-certifi all 2020.6.20-1 [151 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 50.3.0-1 [187 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf python3-xopen all 1.0.1-1 [11.5 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf python3-dnaio armhf 0.4.4-1 [121 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf python3-cutadapt armhf 3.0-1 [144 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.15.0-2 [16.9 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf python3-cycler all 0.10.0-3 [8084 B]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf python3-dateutil all 2.8.1-4 [81.6 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf python3-decorator all 4.4.2-2 [15.8 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf python3-kiwisolver armhf 1.3.1-1 [272 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf python3-pyparsing all 2.4.7-1 [109 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.19.4-1+b2 [2930 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf python3-pil armhf 8.0.1-1+b1 [423 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf python3-matplotlib armhf 3.3.2-2+b1 [4167 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf python3-nose all 1.3.7-7 [133 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf python3-tz all 2020.4-2 [34.8 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf python3-pandas-lib armhf 1.1.4+dfsg-1+rpi1 [2864 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf python3-pandas all 1.1.4+dfsg-1+rpi1 [2092 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf python3-pysam armhf 0.15.4+ds-3+b1 [1344 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf python3-scipy armhf 1.5.4-1 [12.0 MB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf python3-tk armhf 3.8.6-1 [103 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf python3-seaborn all 0.10.1-2 [155 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 50.3.0-1 [511 kB]
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Setting up media-types (1.0.1) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up liblcms2-2:armhf (2.9-4) ...
Setting up libxau6:armhf (1:1.0.8-1+b2) ...
Setting up libpsl5:armhf (0.21.0-1.1) ...
Setting up ttf-bitstream-vera (1.10-8) ...
Setting up libicu67:armhf (67.1-4) ...
Setting up libmagic-mgc (1:5.38-5) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.66.3-2) ...
No schema files found: doing nothing.
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Setting up libdebhelper-perl (13.2.1) ...
Setting up libbrotli1:armhf (1.0.9-2+b1) ...
Setting up x11-common (1:7.7+21) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block.
Setting up libnghttp2-14:armhf (1.42.0-1) ...
Setting up libmagic1:armhf (1:5.38-5) ...
Setting up libdeflate0:armhf (1.6-1) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-5) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up autotools-dev (20180224.1) ...
Setting up libblas3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libexpat1-dev:armhf (2.2.10-1) ...
Setting up libjpeg62-turbo:armhf (1:2.0.5-1.1) ...
Setting up libx11-data (2:1.6.12-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libimagequant0:armhf (2.12.2-1.1) ...
Setting up libpng16-16:armhf (1.6.37-3) ...
Setting up libtcl8.6:armhf (8.6.10+dfsg-1) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libwebp6:armhf (0.6.1-2) ...
Setting up ucf (3.0043) ...
Setting up libgfortran5:armhf (10.2.0-19+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up pigz (2.4-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up libtiff5:armhf (4.1.0+git191117-2) ...
Setting up python-matplotlib-data (3.3.2-2) ...
Setting up openssl (1.1.1h-1) ...
Setting up libwebpmux3:armhf (0.6.1-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up mailcap (3.67) ...
Setting up libelf1:armhf (0.182-1) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.3) ...
Setting up node-jquery (3.5.1+dfsg+~3.5.4-3) ...
Setting up libpython3.9-stdlib:armhf (3.9.1~rc1-2+rpi1) ...
Setting up libpython3-stdlib:armhf (3.9.0-4) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.14-2) ...
Setting up mime-support (3.66) ...
Setting up libtool (2.4.6-14) ...
Setting up fontconfig-config (2.13.1-4.2) ...
Setting up libwebpdemux2:armhf (0.6.1-2) ...
Setting up m4 (1.4.18-4) ...
Setting up libcurl3-gnutls:armhf (7.72.0-1) ...
Setting up ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
126 added, 0 removed; done.
Setting up libpython3.9:armhf (3.9.1~rc1-2+rpi1) ...
Setting up libfreetype6:armhf (2.10.2+dfsg-4) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up libx11-6:armhf (2:1.6.12-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up libjs-jquery (3.5.1+dfsg+~3.5.4-3) ...
Setting up python3.9 (3.9.1~rc1-2+rpi1) ...
Setting up liblbfgsb0:armhf (3.0+dfsg.3-9) ...
Setting up automake (1:1.16.2-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libhts3:armhf (1.11-2) ...
Setting up gettext (0.19.8.1-10) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libpython3.9-dev:armhf (3.9.1~rc1-2+rpi1) ...
Setting up python3 (3.9.0-4) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-tz (2020.4-2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up python3-six (1.15.0-2) ...
Setting up python3-pil:armhf (8.0.1-1+b1) ...
Setting up python3-decorator (4.4.2-2) ...
Setting up libjs-jquery-ui (1.12.1+dfsg-7) ...
Setting up python3-pyparsing (2.4.7-1) ...
Setting up python3-certifi (2020.6.20-1) ...
Setting up python3-cycler (0.10.0-3) ...
Setting up python3-kiwisolver (1.3.1-1) ...
Setting up cython3 (0.29.21-3+b1) ...
Setting up python3.9-dev (3.9.1~rc1-2+rpi1) ...
Setting up python3-dateutil (2.8.1-4) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up python3-lib2to3 (3.8.6-1) ...
Setting up python3-pkg-resources (50.3.0-1) ...
Setting up python3-distutils (3.8.6-1) ...
Setting up dh-python (4.20201102) ...
Setting up libxft2:armhf (2.3.2-2) ...
Setting up python3-pysam (0.15.4+ds-3+b1) ...
Setting up libpython3-dev:armhf (3.9.0-4) ...
Setting up python3-setuptools (50.3.0-1) ...
Setting up po-debconf (1.0.21) ...
Setting up libtk8.6:armhf (8.6.10-1) ...
Setting up python3-all (3.9.0-4) ...
Setting up python3-nose (1.3.7-7) ...
Setting up python3-xopen (1.0.1-1) ...
Setting up libpython3-all-dev:armhf (3.9.0-4) ...
Setting up python3-dev (3.9.0-4) ...
Setting up python3-numpy (1:1.19.4-1+b2) ...
Setting up python3-dnaio (0.4.4-1) ...
Setting up python3-all-dev (3.9.0-4) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-4) ...
Setting up python3-matplotlib (3.3.2-2+b1) ...
Setting up python3-scipy (1.5.4-1) ...
Setting up blt (2.5.3+dfsg-4) ...
Setting up python3-pandas-lib:armhf (1.1.4+dfsg-1+rpi1) ...
Setting up python3-tk:armhf (3.8.6-1) ...
Setting up python3-pandas (1.1.4+dfsg-1+rpi1) ...
Setting up python3-cutadapt (3.0-1) ...
Setting up python3-seaborn (0.10.1-2) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.2.1) ...
Setting up sbuild-build-depends-python-sqt-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-5+rpi1) ...
Processing triggers for ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35.1-4+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-19+rpi1 gcc-10_10.2.0-19+rpi1 libc6-dev_2.31-5+rpi1 libstdc++-10-dev_10.2.0-19+rpi1 libstdc++6_10.2.0-19+rpi1 linux-libc-dev_5.9.6-1+rpi1+b1
Package versions: adduser_3.118 apt_2.1.12 aptitude_0.8.13-2 aptitude-common_0.8.13-2 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1~rc3-1 binutils_2.35.1-4+rpi1 binutils-arm-linux-gnueabihf_2.35.1-4+rpi1 binutils-common_2.35.1-4+rpi1 blt_2.5.3+dfsg-4 bsdextrautils_2.36.1-2 bsdutils_1:2.36.1-2 build-essential_12.8 bzip2_1.0.8-4 ca-certificates_20200601 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.0-19+rpi1 cython3_0.29.21-3+b1 dash_0.5.11+git20200708+dd9ef66-2 debconf_1.5.74 debhelper_13.2.1 debianutils_4.11.2 dh-autoreconf_19 dh-python_4.20201102 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1.1 file_1:5.38-5 findutils_4.7.0+git20201010-2 fontconfig-config_2.13.1-4.2 fonts-lyx_2.3.6-1 g++_4:10.2.0-1+rpi1 g++-10_10.2.0-19+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.0-19+rpi1 gcc-10-base_10.2.0-19+rpi1 gcc-6-base_6.5.0-1+rpi3 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-5+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.59 intltool-debian_0.35.0+20060710.5 krb5-locales_1.18.3-4 libacl1_2.2.53-8 libapt-pkg6.0_2.1.12 libarchive-zip-perl_1.68-1 libasan6_10.2.0-19+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-19+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1+b1 libbinutils_2.35.1-4+rpi1 libblas3_3.9.0-3 libblkid1_2.36.1-2 libboost-iostreams1.71.0_1.71.0-7+b1 libbrotli1_1.0.9-2+b1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-5+rpi1 libc-dev-bin_2.31-5+rpi1 libc6_2.31-5+rpi1 libc6-dev_2.31-5+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.0-19+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-4+rpi1 libctf0_2.35.1-4+rpi1 libcurl3-gnutls_7.72.0-1 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255 libdebhelper-perl_13.2.1 libdeflate0_1.6-1 libdpkg-perl_1.20.5+rpi1 libelf1_0.182-1 libexpat1_2.2.10-1 libexpat1-dev_2.2.10-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1.1 libffi7_3.3-5 libfile-stripnondeterminism-perl_1.9.0-1 libfontconfig1_2.13.1-4.2 libfreetype6_2.10.2+dfsg-4 libgcc-10-dev_10.2.0-19+rpi1 libgcc-s1_10.2.0-19+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgfortran5_10.2.0-19+rpi1 libglib2.0-0_2.66.3-2 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.6.15-4 libgomp1_10.2.0-19+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-4 libhogweed6_3.6-2 libhts3_1.11-2 libicu67_67.1-4 libidn2-0_2.3.0-4 libimagequant0_2.12.2-1.1 libisl23_0.23-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.0.5-1.1 libjs-jquery_3.5.1+dfsg+~3.5.4-3 libjs-jquery-ui_1.12.1+dfsg-7 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libksba8_1.5.0-2 liblapack3_3.9.0-3 liblbfgsb0_3.0+dfsg.3-9 liblcms2-2_2.9-4 libldap-2.4-2_2.4.56+dfsg-1+rpi1+b1 libldap-common_2.4.56+dfsg-1+rpi1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36.1-2 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-1 libnettle8_3.6-2 libnghttp2-14_1.42.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libp11-kit0_0.23.21-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.35-2 libpcre3_2:8.39-13 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libpsl5_0.21.0-1.1 libpython3-all-dev_3.9.0-4 libpython3-dev_3.9.0-4 libpython3-stdlib_3.9.0-4 libpython3.9_3.9.1~rc1-2+rpi1 libpython3.9-dev_3.9.1~rc1-2+rpi1 libpython3.9-minimal_3.9.1~rc1-2+rpi1 libpython3.9-stdlib_3.9.1~rc1-2+rpi1 libreadline8_8.1~rc3-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.0-3+rpi1 libselinux1_3.1-2+b1 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.4-2 libsigsegv2_2.12-2 libsmartcols1_2.36.1-2 libsqlite3-0_3.34.0-1 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1h-1 libstdc++-10-dev_10.2.0-19+rpi1 libstdc++6_10.2.0-19+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.6-4+rpi1 libtasn1-6_4.16.0-2 libtcl8.6_8.6.10+dfsg-1 libtiff5_4.1.0+git191117-2 libtinfo6_6.2+20201114-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtk8.6_8.6.10-1 libtool_2.4.6-14 libubsan1_10.2.0-19+rpi1 libuchardet0_0.0.7-1 libudev1_246.6-4+rpi1 libunistring2_0.9.10-4 libuuid1_2.36.1-2 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libx11-6_2:1.6.12-1 libx11-data_2:1.6.12-1 libxapian30_1.4.17-1 libxau6_1:1.0.8-1+b2 libxcb1_1.14-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.10+dfsg-6.3 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.9.6-1+rpi1+b1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 mailcap_3.67 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 media-types_1.0.1 mime-support_3.66 mount_2.36.1-2 ncurses-base_6.2+20201114-1 ncurses-bin_6.2+20201114-1 netbase_6.2 node-jquery_3.5.1+dfsg+~3.5.4-3 openssl_1.1.1h-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.32_5.32.0-5 pigz_2.4-1 pinentry-curses_1.1.0-4 po-debconf_1.0.21 python-matplotlib-data_3.3.2-2 python3_3.9.0-4 python3-all_3.9.0-4 python3-all-dev_3.9.0-4 python3-certifi_2020.6.20-1 python3-cutadapt_3.0-1 python3-cycler_0.10.0-3 python3-dateutil_2.8.1-4 python3-decorator_4.4.2-2 python3-dev_3.9.0-4 python3-distutils_3.8.6-1 python3-dnaio_0.4.4-1 python3-kiwisolver_1.3.1-1 python3-lib2to3_3.8.6-1 python3-matplotlib_3.3.2-2+b1 python3-minimal_3.9.0-4 python3-nose_1.3.7-7 python3-numpy_1:1.19.4-1+b2 python3-pandas_1.1.4+dfsg-1+rpi1 python3-pandas-lib_1.1.4+dfsg-1+rpi1 python3-pil_8.0.1-1+b1 python3-pkg-resources_50.3.0-1 python3-pyparsing_2.4.7-1 python3-pysam_0.15.4+ds-3+b1 python3-scipy_1.5.4-1 python3-seaborn_0.10.1-2 python3-setuptools_50.3.0-1 python3-six_1.15.0-2 python3-tk_3.8.6-1 python3-tz_2020.4-2 python3-xopen_1.0.1-1 python3.9_3.9.1~rc1-2+rpi1 python3.9-dev_3.9.1~rc1-2+rpi1 python3.9-minimal_3.9.1~rc1-2+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1~rc3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-sqt-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.32+dfsg-1+rpi1 tk8.6-blt2.5_2.5.3+dfsg-4 ttf-bitstream-vera_1.10-8 tzdata_2020d-1 ucf_3.0043 util-linux_2.36.1-2 x11-common_1:7.7+21 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.TfOJi0nT/trustedkeys.kbx': General error
gpgv: Signature made Wed Feb  5 08:49:50 2020 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-sqt_0.8.0-4.dsc
dpkg-source: info: extracting python-sqt in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-sqt_0.8.0.orig.tar.gz
dpkg-source: info: unpacking python-sqt_0.8.0-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fixme_ignore_failing_test.patch
dpkg-source: info: applying fixme_ignore_failing_test2.patch

Check disc space
----------------

Sufficient free space for build

Hack binNMU version
-------------------

Created changelog entry for binNMU version 0.8.0-4+b1

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-3b8033ce-0515-4608-b114-0df03aa509cd
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package python-sqt
dpkg-buildpackage: info: source version 0.8.0-4+b1
dpkg-buildpackage: info: source distribution bullseye-staging
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from python-sqt-0.8.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
 fakeroot debian/rules clean
dh clean --with python3 --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
	pybuild --clean --test-nose -i python{version} -p 3.9
I: pybuild base:232: python3.9 setup.py clean 
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
	rm -rf .pybuild/
	find . -name \*.pyc -exec rm {} \;
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
	rm -f debian/debhelper-build-stamp
	rm -rf debian/.debhelper/
	rm -f -- debian/python3-sqt.substvars debian/files
	rm -fr -- debian/python3-sqt/ debian/tmp/
	find .  \( \( \
		\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
	        \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
		\) -exec rm -f {} + \) -o \
		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 debian/rules build-arch
dh build-arch --with python3 --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
	pybuild --configure --test-nose -i python{version} -p 3.9
I: pybuild base:232: python3.9 setup.py config 
running config
   dh_auto_build -a -O--buildsystem=pybuild
	pybuild --build --test-nose -i python{version} -p 3.9
I: pybuild base:232: /usr/bin/python3 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/_codons.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/align.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/ansicolor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/args.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/cigar.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/colorspace.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/compat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/dna.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/intervaltree.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/math.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/qualtrim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/reads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/region.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
copying sqt/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io
copying sqt/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io
copying sqt/io/bam.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io
copying sqt/io/fasta.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io
copying sqt/io/gtf.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io
copying sqt/io/sff.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/addadapt.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/align.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/bam2fastq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/bameof.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/bamstats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/chars.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/checkfastqpe.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/checkvcfref.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/compare_sequences.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/coverage.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/cutvect.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/fastaextract.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/fastagrep.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/fastastats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/fastxmod.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/fixbam64.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/histogram.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/mutate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/qgramfreq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/qualityguess.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/randomseq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/readcov.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/readlenhisto.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/samfixn.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/samsetop.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/simreads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
copying sqt/commands/translate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands
UPDATING /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/_version.py
set /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/_version.py to '0.8.0'
running build_ext
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/sqt/_helpers.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
Compiling sqt/_helpers.pyx because it changed.
[1/1] Cythonizing sqt/_helpers.pyx
building 'sqt._helpers' extension
creating build
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/sqt
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c sqt/_helpers.c -o build/temp.linux-armhf-3.9/sqt/_helpers.o
sqt/_helpers.c: In function ‘__pyx_pf_3sqt_8_helpers_12nt_to_aa’:
sqt/_helpers.c:6544:51: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 6544 |     __pyx_v_nt0 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[__pyx_v_i])]);
      |                                         ~~~~~~~~~~^~~~~~~~~~~~
sqt/_helpers.c:6553:51: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 6553 |     __pyx_v_nt1 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[(__pyx_v_i + 1)])]);
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
sqt/_helpers.c:6562:51: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 6562 |     __pyx_v_nt2 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[(__pyx_v_i + 2)])]);
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/sqt/_helpers.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/_helpers.cpython-39-arm-linux-gnueabihf.so
   debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
LC_ALL=C.UTF-8 dh_auto_test
	pybuild --test --test-nose -i python{version} -p 3.9
I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build; python3.9 -m nose -v tests
tests.testalign.test_edit_distance ... ok
tests.testalign.test_edit_distance_bytes ... ok
tests.testalign.test_edit_distance_banded ... ok
tests.testalign.test_global_alignment ... ok
tests.testalign.test_consensus ... ok
tests.testalign.test_hamming_distance ... ok
tests.testalign.test_hamming_distance_incorrect_length ... ok
tests.testcigar.test_parse ... ok
tests.testcigar.test_cigar_class ... ok
tests.testcigar.test_parse_error_1 ... ok
tests.testcigar.test_parse_error_2 ... ok
tests.testcigar.test_parse_error_3 ... ok
tests.testcigar.test_elements ... ok
tests.testcigar.test_length ... ok
tests.testcigar.test_concat ... ok
tests.testcigar.test_split_at_element ... ok
tests.testcigar.test_reference_to_query_position ... ok
tests.testcigar.test_clipping ... ok
tests.testcolorspace.test_encode ... ok
tests.testcolorspace.test_decode ... ok
tests.testdna.test_complement_string ... ok
tests.testdna.test_complement_bytes ... ok
tests.testdna.test_n_intervals ... ok
tests.testdna.test_intervals_complement ... ok
tests.testdna.test_amino_acid_regex ... ok
tests.testdna.test_nt_to_aa ... ok
tests.testfasta.test_fastqwriter ... ok
tests.testfasta.test_fastqwriter_twoheaders ... ok
tests.testfasta.test_fastawriter ... ok
tests.testfasta.test_fastawriter_linelength ... ok
tests.testfasta.test_fastawriter_sequence ... ok
tests.testfasta.test_fastawriter_contextmanager ... ok
tests.testfasta.test_fastareader ... ok
tests.testfasta.test_fastareader_upper ... ok
tests.testfasta.test_fastareader_lower ... ok
tests.testfasta.test_fastareader_binary ... ok
tests.testfasta.test_sequence_reader ... ok
tests.testfasta.test_fastareader_contextmanager ... ok
tests.testfasta.test_fastq_header ... ok
tests.testindexedfasta.test_indexedfasta_contextmanager ... ok
tests.testindexedfasta.test_indexedfasta ... ok
tests.testindexedfasta.test_all_regions ... ok
tests.testintervaltree.test_intervaltree ... ok
tests.testmedian.test_median ... ok
tests.testregion.test_region ... ok

----------------------------------------------------------------------
Ran 45 tests in 86.222s

OK
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
   dh_testroot -a -O--buildsystem=pybuild
   dh_prep -a -O--buildsystem=pybuild
	rm -f -- debian/python3-sqt.substvars
	rm -fr -- debian/.debhelper/generated/python3-sqt/ debian/python3-sqt/ debian/tmp/
   dh_auto_install -a -O--buildsystem=pybuild
	install -d /<<PKGBUILDDIR>>/debian/python3-sqt
	pybuild --install --test-nose -i python{version} -p 3.9 --dest-dir /<<PKGBUILDDIR>>/debian/python3-sqt
I: pybuild base:232: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-sqt 
running install
running build
running build_py
UPDATING /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/_version.py
set /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/_version.py to '0.8.0'
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__main__.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/_codons.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/align.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/ansicolor.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/args.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/cigar.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/colorspace.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/compat.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/dna.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/intervaltree.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/math.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/qualtrim.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/reads.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/region.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/utils.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io/bam.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io/fasta.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io/gtf.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io/sff.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io/__pycache__/fasta.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/io/__pycache__/gtf.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/addadapt.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/align.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/bam2fastq.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/bameof.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/bamstats.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/chars.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/checkfastqpe.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/checkvcfref.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/compare_sequences.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/coverage.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/cutvect.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/fastaextract.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/fastagrep.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/fastastats.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/fastxmod.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/fixbam64.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/histogram.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/mutate.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/qgramfreq.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/qualityguess.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/randomseq.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/readcov.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/readlenhisto.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/samfixn.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/samsetop.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/simreads.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/commands/translate.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/_helpers.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
creating /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/_version.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/args.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/compat.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/_codons.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/cigar.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/align.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/utils.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/colorspace.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/dna.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/intervaltree.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/math.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/__pycache__/region.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_sqt/build/sqt/_version.py -> /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/__main__.py to __main__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/_codons.py to _codons.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/align.py to align.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/ansicolor.py to ansicolor.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/args.py to args.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/cigar.py to cigar.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/colorspace.py to colorspace.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/compat.py to compat.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/dna.py to dna.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/intervaltree.py to intervaltree.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/math.py to math.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/qualtrim.py to qualtrim.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/reads.py to reads.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/region.py to region.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/utils.py to utils.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io/bam.py to bam.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io/fasta.py to fasta.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io/gtf.py to gtf.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/io/sff.py to sff.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/addadapt.py to addadapt.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/align.py to align.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/bam2fastq.py to bam2fastq.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/bameof.py to bameof.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/bamstats.py to bamstats.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/chars.py to chars.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/checkfastqpe.py to checkfastqpe.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/checkvcfref.py to checkvcfref.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/compare_sequences.py to compare_sequences.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/coverage.py to coverage.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/cutvect.py to cutvect.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/fastaextract.py to fastaextract.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/fastagrep.py to fastagrep.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/fastastats.py to fastastats.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/fastxmod.py to fastxmod.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/fixbam64.py to fixbam64.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/histogram.py to histogram.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/mutate.py to mutate.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/qgramfreq.py to qgramfreq.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/qualityguess.py to qualityguess.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/randomseq.py to randomseq.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/readcov.py to readcov.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/readlenhisto.py to readlenhisto.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/samfixn.py to samfixn.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/samsetop.py to samsetop.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/simreads.py to simreads.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/commands/translate.py to translate.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt/_version.py to _version.cpython-39.pyc
running install_egg_info
running egg_info
creating sqt.egg-info
writing sqt.egg-info/PKG-INFO
writing dependency_links to sqt.egg-info/dependency_links.txt
writing entry points to sqt.egg-info/entry_points.txt
writing requirements to sqt.egg-info/requires.txt
writing top-level names to sqt.egg-info/top_level.txt
writing manifest file 'sqt.egg-info/SOURCES.txt'
reading manifest file 'sqt.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'sqt.egg-info/SOURCES.txt'
Copying sqt.egg-info to /<<PKGBUILDDIR>>/debian/python3-sqt/usr/lib/python3.9/dist-packages/sqt-0.8.0.egg-info
Skipping SOURCES.txt
running install_scripts
Installing sqt script to /<<PKGBUILDDIR>>/debian/python3-sqt/usr/bin
   dh_installdocs -a -O--buildsystem=pybuild
	install -d debian/python3-sqt/usr/share/doc/python3-sqt
	install -d debian/.debhelper/generated/python3-sqt
	install -p -m0644 debian/README.Debian debian/python3-sqt/usr/share/doc/python3-sqt/README.Debian
	install -p -m0644 debian/copyright debian/python3-sqt/usr/share/doc/python3-sqt/copyright
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_installman -a -O--buildsystem=pybuild
	install -d debian/python3-sqt/usr/share/man/man1/
	install -p -m0644 ./debian/sqt.1 debian/python3-sqt/usr/share/man/man1/sqt.1
	man-recode --to-code UTF-8 --suffix .dh-new debian/python3-sqt/usr/share/man/man1/sqt.1
	mv debian/python3-sqt/usr/share/man/man1/sqt.1.dh-new debian/python3-sqt/usr/share/man/man1/sqt.1
	chmod 0644 -- debian/python3-sqt/usr/share/man/man1/sqt.1
   dh_python3 -a -O--buildsystem=pybuild
D: dh_python3 dh_python3:161: version: 4.20201102
D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild']
D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': True, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'}
D: dh_python3 dh_python3:164: args: []
D: dh_python3 dh_python3:165: supported Python versions: 3.9 (default=3.9)
D: dh_python3 debhelper:152: source=python-sqt, binary packages=['python3-sqt']
D: dh_python3 dh_python3:183: processing package python3-sqt...
D: dh_python3 fs:49: moving files from debian/python3-sqt/usr/lib/python3.9/dist-packages to debian/python3-sqt/usr/lib/python3/dist-packages/
D: dh_python3 fs:260: package python3-sqt details = {'requires.txt': {'debian/python3-sqt/usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.9')}, 'ext_no_version': set()}
D: dh_python3 depends:117: generating dependencies for package python3-sqt
D: dh_python3 pydist:142: trying to find dependency for cutadapt (python=None)
D: dh_python3 pydist:142: trying to find dependency for matplotlib (python=None)
D: dh_python3 pydist:142: trying to find dependency for pysam!=0.9.0 (python=None)
D: dh_python3 pydist:142: trying to find dependency for seaborn (python=None)
D: dh_python3 pydist:142: trying to find dependency for xopen (python=None)
D: dh_python3 depends:275: D={'python3-matplotlib', 'python3 (<< 3.10)', 'python3-seaborn', 'python3-pysam', 'python3 (>= 3.9~)', 'python3-cutadapt', 'python3:any', 'python3-xopen'}; R=[]; S=[]; E=[], B=[]; RT=[]
   dh_installinit -a -O--buildsystem=pybuild
   dh_installsystemduser -a -O--buildsystem=pybuild
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_strip_nondeterminism -a -O--buildsystem=pybuild
   dh_compress -a -O--buildsystem=pybuild
	cd debian/python3-sqt
	chmod a-x usr/share/doc/python3-sqt/changelog.Debian usr/share/doc/python3-sqt/changelog.Debian.armhf usr/share/man/man1/sqt.1
	gzip -9nf usr/share/doc/python3-sqt/changelog.Debian usr/share/doc/python3-sqt/changelog.Debian.armhf usr/share/man/man1/sqt.1
	cd '/<<PKGBUILDDIR>>'
   dh_fixperms -a -O--buildsystem=pybuild
	find debian/python3-sqt -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
	find debian/python3-sqt ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
	find debian/python3-sqt/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-sqt/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/python3-sqt/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
	find debian/python3-sqt/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/python3-sqt -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/python3-sqt/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
	find debian/python3-sqt/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
   dh_missing -a -O--buildsystem=pybuild
   dh_dwz -a -O--buildsystem=pybuild
	dwz -- debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-39-arm-linux-gnueabihf.so
   dh_strip -a -O--buildsystem=pybuild
	install -d debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/14
	objcopy --only-keep-debug --compress-debug-sections debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-39-arm-linux-gnueabihf.so debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/14/6c274e10f289ca8dbfeca00b581abc95a24be4.debug
	chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/14/6c274e10f289ca8dbfeca00b581abc95a24be4.debug
	chown 0:0 -- debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/14/6c274e10f289ca8dbfeca00b581abc95a24be4.debug
	strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-39-arm-linux-gnueabihf.so
	objcopy --add-gnu-debuglink debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/14/6c274e10f289ca8dbfeca00b581abc95a24be4.debug debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-39-arm-linux-gnueabihf.so
	install -d debian/.debhelper/python3-sqt/dbgsym-root/usr/share/doc
	ln -s python3-sqt debian/.debhelper/python3-sqt/dbgsym-root/usr/share/doc/python3-sqt-dbgsym
   dh_makeshlibs -a -O--buildsystem=pybuild
	rm -f debian/python3-sqt/DEBIAN/shlibs
   dh_shlibdeps -a -O--buildsystem=pybuild
	install -d debian/python3-sqt/DEBIAN
	dpkg-shlibdeps -Tdebian/python3-sqt.substvars debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-39-arm-linux-gnueabihf.so
   dh_installdeb -a -O--buildsystem=pybuild
	printf '#!/bin/sh\nset -e\n' > debian/python3-sqt/DEBIAN/postinst
	cat debian/python3-sqt.postinst.debhelper >> debian/python3-sqt/DEBIAN/postinst
	chmod 0755 -- debian/python3-sqt/DEBIAN/postinst
	chown 0:0 -- debian/python3-sqt/DEBIAN/postinst
	printf '#!/bin/sh\nset -e\n' > debian/python3-sqt/DEBIAN/prerm
	cat debian/python3-sqt.prerm.debhelper >> debian/python3-sqt/DEBIAN/prerm
	chmod 0755 -- debian/python3-sqt/DEBIAN/prerm
	chown 0:0 -- debian/python3-sqt/DEBIAN/prerm
   dh_gencontrol -a -O--buildsystem=pybuild
	echo misc:Depends= >> debian/python3-sqt.substvars
	echo misc:Pre-Depends= >> debian/python3-sqt.substvars
	install -d debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN
	dpkg-gencontrol -ppython3-sqt -ldebian/changelog -Tdebian/python3-sqt.substvars -Pdebian/.debhelper/python3-sqt/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -DPackage=python3-sqt-dbgsym "-DDepends=python3-sqt (= \${binary:Version})" "-DDescription=debug symbols for python3-sqt" -DBuild-Ids=146c274e10f289ca8dbfeca00b581abc95a24be4 -DSection=debug -UMulti-Arch -UReplaces -UBreaks
dpkg-gencontrol: warning: package python3-sqt: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-sqt: substitution variable ${python3:Versions} unused, but is defined
	chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN/control
	chown 0:0 -- debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN/control
	dpkg-gencontrol -ppython3-sqt -ldebian/changelog -Tdebian/python3-sqt.substvars -Pdebian/python3-sqt
dpkg-gencontrol: warning: package python3-sqt: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-sqt: substitution variable ${python3:Versions} unused, but is defined
	chmod 0644 -- debian/python3-sqt/DEBIAN/control
	chown 0:0 -- debian/python3-sqt/DEBIAN/control
   dh_md5sums -a -O--buildsystem=pybuild
	cd debian/python3-sqt >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
	chmod 0644 -- debian/python3-sqt/DEBIAN/md5sums
	chown 0:0 -- debian/python3-sqt/DEBIAN/md5sums
	cd debian/.debhelper/python3-sqt/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
	chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN/md5sums
	chown 0:0 -- debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN/md5sums
   dh_builddeb -a -O--buildsystem=pybuild
	dpkg-deb --build debian/python3-sqt ..
	dpkg-deb --build debian/.debhelper/python3-sqt/dbgsym-root ..
dpkg-deb: building package 'python3-sqt' in '../python3-sqt_0.8.0-4+b1_armhf.deb'.
dpkg-deb: building package 'python3-sqt-dbgsym' in '../python3-sqt-dbgsym_0.8.0-4+b1_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../python-sqt_0.8.0-4+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-source: info: using options from python-sqt-0.8.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-12-11T08:45:35Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


python-sqt_0.8.0-4+b1_armhf.changes:
------------------------------------

Format: 1.8
Date: Wed, 05 Feb 2020 09:40:37 +0100
Source: python-sqt (0.8.0-4)
Binary: python3-sqt python3-sqt-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 0.8.0-4+b1
Distribution: bullseye-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
 python3-sqt - SeQuencing Tools for biological DNA/RNA high-throughput data
Changes:
 python-sqt (0.8.0-4+b1) bullseye-staging; urgency=low, binary-only=yes
 .
   * Binary-only non-maintainer upload for armhf; no source changes.
   * rebuild due to debcheck failure
Checksums-Sha1:
 451497f113183e66dc7f42f48b8f5cac9de138c4 8589 python-sqt_0.8.0-4+b1_armhf.buildinfo
 f170ba5fb00f838014c50481c48ed30d08c754c4 301456 python3-sqt-dbgsym_0.8.0-4+b1_armhf.deb
 81d397da2961ff31136c694f9d500bf61341ca65 109472 python3-sqt_0.8.0-4+b1_armhf.deb
Checksums-Sha256:
 872b732bed1a621691360a71692cb03d7e62292998fc61215d9f09ab8e393fbb 8589 python-sqt_0.8.0-4+b1_armhf.buildinfo
 bcc7f706987fc104290d19cd8d7d0d17ef31554a175c162cf870edcb1109492b 301456 python3-sqt-dbgsym_0.8.0-4+b1_armhf.deb
 f13c7e9898a7b4294ccc46eda6df73055897d6ed7cf60de41ef57324b28bc319 109472 python3-sqt_0.8.0-4+b1_armhf.deb
Files:
 8774368bd32c2a0fab07dc022da42f65 8589 science optional python-sqt_0.8.0-4+b1_armhf.buildinfo
 ba4f98846df67ef680bf3750c71fbc12 301456 debug optional python3-sqt-dbgsym_0.8.0-4+b1_armhf.deb
 171801429b9729d2ebf799b95c714df8 109472 python optional python3-sqt_0.8.0-4+b1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


python3-sqt-dbgsym_0.8.0-4+b1_armhf.deb
---------------------------------------

 new Debian package, version 2.0.
 size 301456 bytes: control archive=548 bytes.
     401 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: python3-sqt-dbgsym
 Source: python-sqt (0.8.0-4)
 Version: 0.8.0-4+b1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 332
 Depends: python3-sqt (= 0.8.0-4+b1)
 Section: debug
 Priority: optional
 Description: debug symbols for python3-sqt
 Build-Ids: 146c274e10f289ca8dbfeca00b581abc95a24be4

drwxr-xr-x root/root         0 2020-02-05 08:40 ./
drwxr-xr-x root/root         0 2020-02-05 08:40 ./usr/
drwxr-xr-x root/root         0 2020-02-05 08:40 ./usr/lib/
drwxr-xr-x root/root         0 2020-02-05 08:40 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-02-05 08:40 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-02-05 08:40 ./usr/lib/debug/.build-id/14/
-rw-r--r-- root/root    329232 2020-02-05 08:40 ./usr/lib/debug/.build-id/14/6c274e10f289ca8dbfeca00b581abc95a24be4.debug
drwxr-xr-x root/root         0 2020-02-05 08:40 ./usr/share/
drwxr-xr-x root/root         0 2020-02-05 08:40 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-02-05 08:40 ./usr/share/doc/python3-sqt-dbgsym -> python3-sqt


python3-sqt_0.8.0-4+b1_armhf.deb
--------------------------------

 new Debian package, version 2.0.
 size 109472 bytes: control archive=3372 bytes.
    2226 bytes,    46 lines      control              
    5267 bytes,    62 lines      md5sums              
     247 bytes,    12 lines   *  postinst             #!/bin/sh
     396 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: python3-sqt
 Source: python-sqt (0.8.0-4)
 Version: 0.8.0-4+b1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 370
 Depends: libc6 (>= 2.4), python3 (<< 3.10), python3 (>= 3.9~), python3-cutadapt, python3-matplotlib, python3-pysam, python3-seaborn, python3-xopen, python3:any
 Recommends: fonts-noto-color-emoji
 Section: python
 Priority: optional
 Homepage: https://bitbucket.org/marcelm/sqt
 Description: SeQuencing Tools for biological DNA/RNA high-throughput data
  sqt is a collection of command-line tools for working with
  high-throughput sequencing data.  Conceptionally not fixed to use any
  particular language, many sqt subcommands are currently implemented
  in Python. For them, a Python package is available with functions for
  reading and writing FASTA/FASTQ files, computing alignments, quality
  trimming, etc.
  .
  The following tools are offered:
   * sqt-coverage -- Compute per-reference statistics such as coverage
     and GC content
   * sqt-fastqmod -- FASTQ modifications: shorten, subset, reverse
     complement, quality trimming.
   * sqt-fastastats -- Compute N50, min/max length, GC content etc. of
     a FASTA file
   * sqt-qualityguess -- Guess quality encoding of one or more FASTA files.
   * sqt-globalalign -- Compute a global or semiglobal alignment of two strings.
   * sqt-chars -- Count length of the first word given on the command line.
   * sqt-sam-cscq -- Add the CS and CQ tags to a SAM file with colorspace reads.
   * sqt-fastamutate -- Add substitutions and indels to sequences in a
     FASTA file.
   * sqt-fastaextract -- Efficiently extract one or more regions from an
     indexed FASTA file.
   * sqt-translate -- Replace characters in FASTA files (like the 'tr'
     command).
   * sqt-sam-fixn -- Replace all non-ACGT characters within reads in a
     SAM file.
   * sqt-sam-insertsize -- Mean and standard deviation of paired-end
     insert sizes.
   * sqt-sam-set-op -- Set operations (union, intersection, ...) on
     SAM/BAM files.
   * sqt-bam-eof -- Check for the End-Of-File marker in compressed
     BAM files.
   * sqt-checkfastqpe -- Check whether two FASTQ files contain correctly
     paired paired-end data.

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| Post Build                                                                   |
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| Cleanup                                                                      |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

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| Summary                                                                      |
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Build Architecture: armhf
Build-Space: 5908
Build-Time: 228
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 897
Job: python-sqt_0.8.0-4
Machine Architecture: armhf
Package: python-sqt
Package-Time: 1176
Source-Version: 0.8.0-4
Space: 5908
Status: successful
Version: 0.8.0-4+b1
--------------------------------------------------------------------------------
Finished at 2020-12-11T08:45:35Z
Build needed 00:19:36, 5908k disc space
Raspbian Package Auto-Building

Build log for python-sqt (0.8.0-4+b1) on armhf
