Raspbian Package Auto-Building

Build log for python-skbio (0.5.5-7) on armhf

python-skbio → 0.5.5-7 → armhf → 2020-03-05 06:17:40 

sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02

+==============================================================================+
| python-skbio 0.5.5-7 (armhf)                 Thu, 05 Mar 2020 06:04:35 +0000 |
+==============================================================================+

Package: python-skbio
Version: 0.5.5-7
Source Version: 0.5.5-7
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-f108c7ba-5fb8-4e9c-8825-f9bc0a2849bb' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.6 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.4 MB in 11s (2226 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'python-skbio' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-skbio.git
Please use:
git clone https://salsa.debian.org/med-team/python-skbio.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 8366 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main python-skbio 0.5.5-7 (dsc) [2617 B]
Get:2 http://172.17.0.1/private bullseye-staging/main python-skbio 0.5.5-7 (tar) [8310 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main python-skbio 0.5.5-7 (diff) [53.3 kB]
Fetched 8366 kB in 2s (4285 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-skbio-5rf7zi/python-skbio-0.5.5' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-skbio-5rf7zi' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-fGEM6X/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-fGEM6X/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-fGEM6X/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-fGEM6X/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-fGEM6X/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-fGEM6X/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-fGEM6X/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-fGEM6X/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (9913 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 15 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-fGEM6X/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12215 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 12), dh-python, python3-all-dev, python3-setuptools, python3-numpy (>= 1:1.9.2), python3-matplotlib, python3-cachecontrol, python3-decorator, python3-pandas (>= 0.19.2), python3-scipy (>= 1.3.3), python3-ipython, python3-hdmedians, python3-sklearn, python3-natsort, libssw-dev, sphinx-common, python3-lockfile, python3-pytest
Filtered Build-Depends: debhelper-compat (= 12), dh-python, python3-all-dev, python3-setuptools, python3-numpy (>= 1:1.9.2), python3-matplotlib, python3-cachecontrol, python3-decorator, python3-pandas (>= 0.19.2), python3-scipy (>= 1.3.3), python3-ipython, python3-hdmedians, python3-sklearn, python3-natsort, libssw-dev, sphinx-common, python3-lockfile, python3-pytest
dpkg-deb: building package 'sbuild-build-depends-python-skbio-dummy' in '/<<BUILDDIR>>/resolver-fGEM6X/apt_archive/sbuild-build-depends-python-skbio-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-python-skbio-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-fGEM6X/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-fGEM6X/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-fGEM6X/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-fGEM6X/apt_archive ./ Sources [650 B]
Get:5 copy:/<<BUILDDIR>>/resolver-fGEM6X/apt_archive ./ Packages [713 B]
Fetched 2696 B in 0s (11.5 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install python-skbio build dependencies (apt-based resolver)
------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
  cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
  fonts-lyx gcc-10-base gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libatlas3-base libblas3 libbsd0 libcroco3
  libdebhelper-perl libelf1 libexpat1 libexpat1-dev
  libfile-stripnondeterminism-perl libfreetype6 libgcc-s1 libgfortran5
  libglib2.0-0 libicu63 libjs-jquery libjs-jquery-ui libjs-sphinxdoc
  libjs-underscore liblapack3 liblbfgsb0 libmagic-mgc libmagic1 libmpdec2
  libncurses6 libpipeline1 libpng16-16 libprocps7 libpython3-all-dev
  libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev
  libpython3.7-minimal libpython3.7-stdlib libpython3.8 libpython3.8-dev
  libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libssl1.1 libssw-dev
  libssw0 libsub-override-perl libtinfo5 libtool libuchardet0 libxml2 m4
  man-db mime-support openssl po-debconf procps python-matplotlib-data python3
  python3-all python3-all-dev python3-atomicwrites python3-attr
  python3-backcall python3-cachecontrol python3-certifi python3-chardet
  python3-cycler python3-dateutil python3-decorator python3-dev
  python3-distutils python3-hdmedians python3-idna python3-importlib-metadata
  python3-ipython python3-ipython-genutils python3-jedi python3-joblib
  python3-kiwisolver python3-lib2to3 python3-lockfile python3-matplotlib
  python3-minimal python3-more-itertools python3-msgpack python3-natsort
  python3-numpy python3-packaging python3-pandas python3-pandas-lib
  python3-parso python3-pexpect python3-pickleshare python3-pkg-resources
  python3-pluggy python3-prompt-toolkit python3-ptyprocess python3-py
  python3-pygments python3-pyparsing python3-pytest python3-requests
  python3-scipy python3-setuptools python3-six python3-sklearn
  python3-sklearn-lib python3-traitlets python3-tz python3-urllib3
  python3-wcwidth python3-zipp python3.7 python3.7-dev python3.7-minimal
  python3.8 python3.8-dev python3.8-minimal sensible-utils sphinx-common
  ttf-bitstream-vera zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev
  groff libjs-jquery-ui-docs libtool-doc gfortran | fortran95-compiler gcj-jdk
  m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk
  python3-venv python-attr-doc python-cycler-doc python-lockfile-doc dvipng
  ffmpeg gir1.2-gtk-3.0 ghostscript inkscape ipython3 librsvg2-common
  python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo
  python3-gobject python3-nose python3-pyqt5 python3-sip python3-tornado
  texlive-extra-utils texlive-latex-extra ttf-staypuft gfortran
  python-numpy-doc python3-numpy-dbg python-pandas-doc python3-statsmodels
  python-pexpect-doc subversion python-pygments-doc python-pyparsing-doc
  python3-cryptography python3-openssl python3-socks python-scipy-doc
  python-setuptools-doc python3-dap python-sklearn-doc python3.7-venv
  python3.7-doc binfmt-support python3.8-venv python3.8-doc
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs javascript-common libgpm2 libltdl-dev libmail-sendmail-perl
  psmisc python3-simplejson python3-psutil python3-pil python3-tk
  python-natsort-doc python3-numexpr python3-tables python3-xlrd
  python3-openpyxl python3-xlwt python3-bs4 python3-html5lib python3-lxml
  python3-nose python-sphinx | python3-sphinx
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
  cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
  fonts-lyx gcc-10-base gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libatlas3-base libblas3 libbsd0 libcroco3
  libdebhelper-perl libelf1 libexpat1 libexpat1-dev
  libfile-stripnondeterminism-perl libfreetype6 libgcc-s1 libgfortran5
  libglib2.0-0 libicu63 libjs-jquery libjs-jquery-ui libjs-sphinxdoc
  libjs-underscore liblapack3 liblbfgsb0 libmagic-mgc libmagic1 libmpdec2
  libncurses6 libpipeline1 libpng16-16 libprocps7 libpython3-all-dev
  libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev
  libpython3.7-minimal libpython3.7-stdlib libpython3.8 libpython3.8-dev
  libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libssl1.1 libssw-dev
  libssw0 libsub-override-perl libtinfo5 libtool libuchardet0 libxml2 m4
  man-db mime-support openssl po-debconf procps python-matplotlib-data python3
  python3-all python3-all-dev python3-atomicwrites python3-attr
  python3-backcall python3-cachecontrol python3-certifi python3-chardet
  python3-cycler python3-dateutil python3-decorator python3-dev
  python3-distutils python3-hdmedians python3-idna python3-importlib-metadata
  python3-ipython python3-ipython-genutils python3-jedi python3-joblib
  python3-kiwisolver python3-lib2to3 python3-lockfile python3-matplotlib
  python3-minimal python3-more-itertools python3-msgpack python3-natsort
  python3-numpy python3-packaging python3-pandas python3-pandas-lib
  python3-parso python3-pexpect python3-pickleshare python3-pkg-resources
  python3-pluggy python3-prompt-toolkit python3-ptyprocess python3-py
  python3-pygments python3-pyparsing python3-pytest python3-requests
  python3-scipy python3-setuptools python3-six python3-sklearn
  python3-sklearn-lib python3-traitlets python3-tz python3-urllib3
  python3-wcwidth python3-zipp python3.7 python3.7-dev python3.7-minimal
  python3.8 python3.8-dev python3.8-minimal
  sbuild-build-depends-python-skbio-dummy sensible-utils sphinx-common
  ttf-bitstream-vera zlib1g-dev
0 upgraded, 140 newly installed, 0 to remove and 15 not upgraded.
Need to get 172 MB of archives.
After this operation, 506 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-fGEM6X/apt_archive ./ sbuild-build-depends-python-skbio-dummy 0.invalid.0 [996 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf gcc-10-base armhf 10-20200211-1+rpi1 [195 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libgcc-s1 armhf 10-20200211-1+rpi1 [36.2 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.1-1 [1262 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.6-1+b1 [585 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.6-1+b1 [1525 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.7.5-3 [36.8 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-3 [68.1 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.6-1+b1 [1669 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.6-1+b1 [351 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.7.5-3 [20.2 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.7.5-3 [62.1 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.2-1 [744 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.2-1 [1628 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20191019-1 [79.5 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libprocps7 armhf 2:3.3.15-2 [58.9 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.15-2 [235 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-4 [112 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1d-2 [806 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20190110 [157 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.14-0.1 [1375 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-13 [513 kB]
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Get:43 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.9 [183 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-2 [104 kB]
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Get:46 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-2 [14.7 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.5-1 [1140 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-8 [593 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.9 [994 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.0-1 [78.3 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.0-1 [145 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20191017 [94.4 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf fonts-lyx all 2.3.4.2-2 [200 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10-20200211-1+rpi1 [229 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libatlas3-base armhf 3.10.3-9+rpi1 [2527 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-1 [108 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-2 [274 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.1-2 [330 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery all 3.3.1~dfsg-3 [332 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libjs-underscore all 1.9.1~dfsg-1 [99.4 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libjs-sphinxdoc all 1.8.5-5 [96.7 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-1 [1597 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-7 [26.1 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7 armhf 3.7.6-1+b1 [1256 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-dev armhf 3.7.6-1+b1 [40.2 MB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.7.5-3 [20.3 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.2-1 [1597 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8 armhf 3.8.2-1 [1367 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-dev armhf 3.8.2-1 [46.0 MB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.7.5-3 [1072 B]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libssw0 armhf 1.1-9 [21.5 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libssw-dev armhf 1.1-9 [24.8 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf ttf-bitstream-vera all 1.10-8 [352 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf python-matplotlib-data all 3.1.2-2 [4139 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.2-1 [410 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.7.5-3 [1060 B]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1.2 [203 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf python3.7-dev armhf 3.7.6-1+b1 [518 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.7.5-3 [1260 B]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf python3.8-dev armhf 3.8.2-1 [533 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.7.5-3 [1076 B]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf python3-atomicwrites all 1.1.5-2 [6892 B]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf python3-attr all 19.3.0-1 [43.1 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf python3-backcall all 0.1.0-2 [11.2 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf python3-certifi all 2019.11.28-1 [149 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 44.0.0-1 [155 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf python3-chardet all 3.0.4-4 [80.8 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf python3-idna all 2.6-2 [34.4 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.14.0-2 [16.7 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf python3-urllib3 all 1.25.8-1 [104 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf python3-requests all 2.22.0-2 [67.0 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf python3-msgpack armhf 0.5.6-3 [112 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf python3-cachecontrol all 0.12.6-1 [16.4 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf python3-cycler all 0.10.0-3 [8084 B]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf python3-dateutil all 2.7.3-3 [64.5 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf python3-decorator all 4.3.0-1.1 [14.5 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.17.4-5+b1 [4484 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf python3-hdmedians armhf 0.13~git20171027.8e0e9e3-1+b1 [125 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf python3-more-itertools all 4.2.0-1 [42.2 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf python3-zipp all 1.0.0-1 [5944 B]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf python3-importlib-metadata all 1.5.0-1 [9956 B]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf python3-parso all 0.5.2-1 [63.5 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf python3-jedi all 0.15.2-1 [505 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf python3-ptyprocess all 0.6.0-1 [13.2 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf python3-pexpect all 4.6.0-1 [52.4 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf python3-pickleshare all 0.7.5-1 [7348 B]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf python3-wcwidth all 0.1.8+dfsg1-3 [17.4 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf python3-prompt-toolkit all 2.0.10-2 [241 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf python3-pygments all 2.3.1+dfsg-1 [594 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf python3-ipython-genutils all 0.2.0-1 [20.9 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf python3-traitlets all 4.3.3-2 [61.5 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf python3-ipython all 7.12.0-1 [506 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf python3-joblib all 0.14.0-3 [203 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf python3-kiwisolver armhf 1.0.1-3 [245 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf python3-lockfile all 1:0.12.2-2 [17.1 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf python3-pyparsing all 2.4.6-1 [109 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf python3-matplotlib armhf 3.1.2-2 [5303 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf python3-natsort all 6.0.0-1.2 [31.0 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf python3-packaging all 19.1-2 [23.9 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf python3-tz all 2019.3-1 [27.2 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf python3-pandas-lib armhf 0.25.3+dfsg-7 [7006 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf python3-pandas all 0.25.3+dfsg-7 [1984 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf python3-pluggy all 0.13.0-2 [21.9 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf python3-py all 1.8.1-1 [86.8 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf python3-pytest all 4.6.9-1 [267 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf python3-scipy armhf 1.3.3-3+b1 [12.1 MB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 44.0.0-1 [313 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf python3-sklearn-lib armhf 0.20.3+dfsg-0.1 [1352 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf python3-sklearn all 0.20.3+dfsg-0.1 [1572 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf sphinx-common all 1.8.5-5 [491 kB]
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/usr/lib/python3/dist-packages/pandas/tests/frame/test_alter_axes.py:241: SyntaxWarning: "is" with a literal. Did you mean "=="?
  False if (keys[0] is "A" and keys[1] is "A") else drop  # noqa: F632
/usr/lib/python3/dist-packages/pandas/tests/frame/test_alter_axes.py:241: SyntaxWarning: "is" with a literal. Did you mean "=="?
  False if (keys[0] is "A" and keys[1] is "A") else drop  # noqa: F632
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/usr/lib/python3/dist-packages/sklearn/datasets/lfw.py:179: SyntaxWarning: "is" with a literal. Did you mean "=="?
  if img.ndim is 0:
/usr/lib/python3/dist-packages/sklearn/model_selection/tests/test_search.py:887: SyntaxWarning: "is not" with a literal. Did you mean "!="?
  if k is not 'rank_test_score')
/usr/lib/python3/dist-packages/sklearn/model_selection/tests/test_search.py:890: SyntaxWarning: "is not" with a literal. Did you mean "!="?
  k is not 'rank_test_score')
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Setting up debhelper (12.9) ...
Setting up sbuild-build-depends-python-skbio-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-10+rpi1) ...
Processing triggers for ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.34-3+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-25+rpi1 gcc-9_9.2.1-25+rpi1 libc6-dev_2.29-10+rpi1 libstdc++-9-dev_9.2.1-25+rpi1 libstdc++6_9.2.1-25+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4+b1 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-3+rpi1 binutils-arm-linux-gnueabihf_2.34-3+rpi1 binutils-common_2.34-3+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-25+rpi1 cython3_0.29.14-0.1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20191017 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dirmngr_2.2.19-2 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 fonts-lyx_2.3.4.2-2 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-25+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10-20200211-1+rpi1 gcc-9_9.2.1-25+rpi1 gcc-9-base_9.2.1-25+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.19-2 gnupg-l10n_2.2.19-2 gnupg-utils_2.2.19-2 gpg_2.2.19-2 gpg-agent_2.2.19-2 gpg-wks-client_2.2.19-2 gpg-wks-server_2.2.19-2 gpgconf_2.2.19-2 gpgsm_2.2.19-2 gpgv_2.2.19-2 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-1 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4+b1 libarchive-zip-perl_1.67-2 libasan5_9.2.1-25+rpi1 libassuan0_2.5.3-7 libatlas3-base_3.10.3-9+rpi1 libatomic1_9.2.1-25+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-3+rpi1 libblas3_3.9.0-1 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-10+rpi1 libc-dev-bin_2.29-10+rpi1 libc6_2.29-10+rpi1 libc6-dev_2.29-10+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.32-1 libcap2-bin_1:2.32-1 libcc1-0_9.2.1-25+rpi1 libcom-err2_1.45.5-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10+b5 libcrypt1_1:4.4.10-10+b5 libctf-nobfd0_2.34-3+rpi1 libctf0_2.34-3+rpi1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.9 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libfreetype6_2.10.1-2 libgcc-9-dev_9.2.1-25+rpi1 libgcc-s1_10-20200211-1+rpi1 libgcc1_1:9.2.1-25+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_10-20200211-1+rpi1 libglib2.0-0_2.62.5-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.12-2 libgomp1_9.2.1-25+rpi1 libgpg-error0_1.37-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl22_0.22.1-1 libjs-jquery_3.3.1~dfsg-3 libjs-jquery-ui_1.12.1+dfsg-5 libjs-sphinxdoc_1.8.5-5 libjs-underscore_1.9.1~dfsg-1 libksba8_1.3.5-2 liblapack3_3.9.0-1 liblbfgsb0_3.0+dfsg.3-7 libldap-2.4-2_2.4.49+dfsg-1+rpi1 libldap-common_2.4.49+dfsg-1+rpi1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1 libpam-cap_1:2.32-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpng16-16_1.6.37-2 libprocps7_2:3.3.15-2 libpython3-all-dev_3.7.5-3 libpython3-dev_3.7.5-3 libpython3-stdlib_3.7.5-3 libpython3.7_3.7.6-1+b1 libpython3.7-dev_3.7.6-1+b1 libpython3.7-minimal_3.7.6-1+b1 libpython3.7-stdlib_3.7.6-1+b1 libpython3.8_3.8.2-1 libpython3.8-dev_3.8.2-1 libpython3.8-minimal_3.8.2-1 libpython3.8-stdlib_3.8.2-1 libreadline7_7.0-5 libreadline8_8.0-4 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2+rpi1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.31.1-3 libss2_1.45.5-2 libssl1.1_1.1.1d-2 libssw-dev_1.1-9 libssw0_1.1-9 libstdc++-9-dev_9.2.1-25+rpi1 libstdc++6_9.2.1-25+rpi1 libsub-override-perl_0.09-2 libsystemd0_244.3-1+rpi1 libtasn1-6_4.16.0-2 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-13 libubsan1_9.2.1-25+rpi1 libuchardet0_0.0.6-3 libudev1_244.3-1+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml2_2.9.4+dfsg1-8 libzstd1_1.4.4+dfsg-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_6.1 openssl_1.1.1d-2 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 po-debconf_1.0.21 procps_2:3.3.15-2 python-matplotlib-data_3.1.2-2 python3_3.7.5-3 python3-all_3.7.5-3 python3-all-dev_3.7.5-3 python3-atomicwrites_1.1.5-2 python3-attr_19.3.0-1 python3-backcall_0.1.0-2 python3-cachecontrol_0.12.6-1 python3-certifi_2019.11.28-1 python3-chardet_3.0.4-4 python3-cycler_0.10.0-3 python3-dateutil_2.7.3-3 python3-decorator_4.3.0-1.1 python3-dev_3.7.5-3 python3-distutils_3.8.0-1 python3-hdmedians_0.13~git20171027.8e0e9e3-1+b1 python3-idna_2.6-2 python3-importlib-metadata_1.5.0-1 python3-ipython_7.12.0-1 python3-ipython-genutils_0.2.0-1 python3-jedi_0.15.2-1 python3-joblib_0.14.0-3 python3-kiwisolver_1.0.1-3 python3-lib2to3_3.8.0-1 python3-lockfile_1:0.12.2-2 python3-matplotlib_3.1.2-2 python3-minimal_3.7.5-3 python3-more-itertools_4.2.0-1 python3-msgpack_0.5.6-3 python3-natsort_6.0.0-1.2 python3-numpy_1:1.17.4-5+b1 python3-packaging_19.1-2 python3-pandas_0.25.3+dfsg-7 python3-pandas-lib_0.25.3+dfsg-7 python3-parso_0.5.2-1 python3-pexpect_4.6.0-1 python3-pickleshare_0.7.5-1 python3-pkg-resources_44.0.0-1 python3-pluggy_0.13.0-2 python3-prompt-toolkit_2.0.10-2 python3-ptyprocess_0.6.0-1 python3-py_1.8.1-1 python3-pygments_2.3.1+dfsg-1 python3-pyparsing_2.4.6-1 python3-pytest_4.6.9-1 python3-requests_2.22.0-2 python3-scipy_1.3.3-3+b1 python3-setuptools_44.0.0-1 python3-six_1.14.0-2 python3-sklearn_0.20.3+dfsg-0.1 python3-sklearn-lib_0.20.3+dfsg-0.1 python3-traitlets_4.3.3-2 python3-tz_2019.3-1 python3-urllib3_1.25.8-1 python3-wcwidth_0.1.8+dfsg1-3 python3-zipp_1.0.0-1 python3.7_3.7.6-1+b1 python3.7-dev_3.7.6-1+b1 python3.7-minimal_3.7.6-1+b1 python3.8_3.8.2-1 python3.8-dev_3.8.2-1 python3.8-minimal_3.8.2-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-skbio-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sphinx-common_1.8.5-5 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6 ttf-bitstream-vera_1.10-8 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1.2 zlib1g-dev_1:1.2.11.dfsg-1.2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Feb 28 14:20:08 2020 UTC
gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-skbio_0.5.5-7.dsc
dpkg-source: info: extracting python-skbio in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-skbio_0.5.5.orig.tar.gz
dpkg-source: info: unpacking python-skbio_0.5.5-7.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying mathjax-path
dpkg-source: info: applying 0002-use-libsww-as-library-not-embedded-src.patch
dpkg-source: info: applying no_privacy_breach_logo.patch
dpkg-source: info: applying 6497020.patch
dpkg-source: info: applying 9c061da7e2746aee403b41621f71b118ce5c52f8.patch
dpkg-source: info: applying ignore_failing_patches.patch
dpkg-source: info: applying simde
dpkg-source: info: applying pandas_1_0_1
dpkg-source: info: applying soften_test

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-f108c7ba-5fb8-4e9c-8825-f9bc0a2849bb
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package python-skbio
dpkg-buildpackage: info: source version 0.5.5-7
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean --with python3,sphinxdoc --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
if [ "`find . -name "*.pyo"`" = "" ] ; then echo no need to clean up ; else dh_auto_clean; fi
no need to clean up
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--buildsystem=pybuild
   debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_clean
find ./skbio -name '*.so' -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
 debian/rules build-arch
dh build-arch --with python3,sphinxdoc --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.8 setup.py config 
running config
I: pybuild base:217: python3.7 setup.py config 
running config
   debian/rules override_dh_auto_build-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
I: pybuild base:217: /usr/bin/python3.8 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/benchmarks
copying benchmarks/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/benchmarks
copying benchmarks/benchmarks.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/benchmarks
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio
copying skbio/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio
copying skbio/_base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio
copying skbio/test.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio
copying skbio/workflow.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment
copying skbio/alignment/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment
copying skbio/alignment/_indexing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment
copying skbio/alignment/_pairwise.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment
copying skbio/alignment/_repr.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment
copying skbio/alignment/_tabular_msa.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity
copying skbio/diversity/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity
copying skbio/diversity/_block.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity
copying skbio/diversity/_driver.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity
copying skbio/diversity/_util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io
copying skbio/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io
copying skbio/io/_exception.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io
copying skbio/io/_fileobject.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io
copying skbio/io/_iosources.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io
copying skbio/io/_warning.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io
copying skbio/io/registry.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io
copying skbio/io/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata
copying skbio/metadata/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata
copying skbio/metadata/_interval.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata
copying skbio/metadata/_mixin.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata
copying skbio/metadata/_repr.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata
copying skbio/metadata/_testing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence
copying skbio/sequence/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence
copying skbio/sequence/_dna.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence
copying skbio/sequence/_genetic_code.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence
copying skbio/sequence/_grammared_sequence.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence
copying skbio/sequence/_nucleotide_mixin.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence
copying skbio/sequence/_protein.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence
copying skbio/sequence/_repr.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence
copying skbio/sequence/_rna.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence
copying skbio/sequence/distance.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence
copying skbio/sequence/_sequence.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats
copying skbio/stats/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats
copying skbio/stats/_misc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats
copying skbio/stats/_subsample.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats
copying skbio/stats/composition.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats
copying skbio/stats/power.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats
copying skbio/stats/gradient.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/tests
copying skbio/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/tests
copying skbio/tests/test_base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/tests
copying skbio/tests/test_workflow.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/tests
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/tree
copying skbio/tree/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/tree
copying skbio/tree/_exception.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/tree
copying skbio/tree/_majority_rule.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/tree
copying skbio/tree/_nj.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/tree
copying skbio/tree/_tree.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/tree
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/util
copying skbio/util/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/util
copying skbio/util/_decorator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/util
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copying skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_eigh_ref_3dim -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_fsvd_ref_3dim -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/PCoA_skbio -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example2_X -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example2_Y -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example2_biplot_scaling1 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example2_biplot_scaling2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example3_X -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example3_Y -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example3_biplot_scaling1 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example3_biplot_scaling2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/varechem.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/varespec.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data
running build_ext
building 'skbio.metadata._intersection' extension
creating build
creating build/temp.linux-armhf-3.8
creating build/temp.linux-armhf-3.8/skbio
creating build/temp.linux-armhf-3.8/skbio/metadata
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c skbio/metadata/_intersection.c -o build/temp.linux-armhf-3.8/skbio/metadata/_intersection.o -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3
skbio/metadata/_intersection.c: In function 'PyInit__intersection':
skbio/metadata/_intersection.c:8617:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
 8617 |   __pyx_type_5skbio_8metadata_13_intersection_IntervalNode.tp_print = 0;
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
                 from /usr/include/python3.8/pytime.h:6,
                 from /usr/include/python3.8/Python.h:85,
                 from skbio/metadata/_intersection.c:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
  260 |     Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      |                              ^~~~~~~~
skbio/metadata/_intersection.c:8622:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
 8622 |   __pyx_type_5skbio_8metadata_13_intersection_IntervalObj.tp_print = 0;
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
                 from /usr/include/python3.8/pytime.h:6,
                 from /usr/include/python3.8/Python.h:85,
                 from skbio/metadata/_intersection.c:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
  260 |     Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      |                              ^~~~~~~~
skbio/metadata/_intersection.c:8626:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
 8626 |   __pyx_type_5skbio_8metadata_13_intersection_IntervalTree.tp_print = 0;
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
                 from /usr/include/python3.8/pytime.h:6,
                 from /usr/include/python3.8/Python.h:85,
                 from skbio/metadata/_intersection.c:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
  260 |     Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      |                              ^~~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/skbio/metadata/_intersection.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/_intersection.cpython-38-arm-linux-gnueabihf.so
building 'skbio.stats.__subsample' extension
creating build/temp.linux-armhf-3.8/skbio/stats
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c skbio/stats/__subsample.c -o build/temp.linux-armhf-3.8/skbio/stats/__subsample.o -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from skbio/stats/__subsample.c:250:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from skbio/stats/__subsample.c:250:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: '_import_array' defined but not used [-Wunused-function]
 1463 | _import_array(void)
      | ^~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/skbio/stats/__subsample.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/__subsample.cpython-38-arm-linux-gnueabihf.so
building 'skbio.alignment._ssw_wrapper' extension
creating build/temp.linux-armhf-3.8/skbio/alignment
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c skbio/alignment/_ssw_wrapper.c -o build/temp.linux-armhf-3.8/skbio/alignment/_ssw_wrapper.o -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from skbio/alignment/_ssw_wrapper.c:256:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
In file included from skbio/alignment/_lib/ssw.h:17,
                 from skbio/alignment/_ssw_wrapper.c:258:
skbio/alignment/_lib/../../../debian/include/simde/x86/sse2.h: In function 'simde_mm_bsrli_si128':
skbio/alignment/_lib/../../../debian/include/simde/x86/sse2.h:808:22: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  808 |   for (int i = 0 ; i < (sizeof(r_.i8) / sizeof(r_.i8[0])) ; i++) {
      |                      ^
skbio/alignment/_ssw_wrapper.c: In function 'PyInit__ssw_wrapper':
skbio/alignment/_ssw_wrapper.c:10044:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
10044 |   __pyx_type_5skbio_9alignment_12_ssw_wrapper_AlignmentStructure.tp_print = 0;
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
                 from /usr/include/python3.8/pytime.h:6,
                 from /usr/include/python3.8/Python.h:85,
                 from skbio/alignment/_ssw_wrapper.c:17:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
  260 |     Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      |                              ^~~~~~~~
skbio/alignment/_ssw_wrapper.c:10053:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
10053 |   __pyx_type_5skbio_9alignment_12_ssw_wrapper_StripedSmithWaterman.tp_print = 0;
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
                 from /usr/include/python3.8/pytime.h:6,
                 from /usr/include/python3.8/Python.h:85,
                 from skbio/alignment/_ssw_wrapper.c:17:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
  260 |     Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
      |                              ^~~~~~~~
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from skbio/alignment/_ssw_wrapper.c:256:
At top level:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: '_import_array' defined but not used [-Wunused-function]
 1463 | _import_array(void)
      | ^~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/skbio/alignment/_ssw_wrapper.o -lssw -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/_ssw_wrapper.cpython-38-arm-linux-gnueabihf.so
building 'skbio.diversity._phylogenetic' extension
creating build/temp.linux-armhf-3.8/skbio/diversity
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c skbio/diversity/_phylogenetic.c -o build/temp.linux-armhf-3.8/skbio/diversity/_phylogenetic.o -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from skbio/diversity/_phylogenetic.c:242:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from skbio/diversity/_phylogenetic.c:242:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: '_import_array' defined but not used [-Wunused-function]
 1463 | _import_array(void)
      | ^~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/skbio/diversity/_phylogenetic.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/_phylogenetic.cpython-38-arm-linux-gnueabihf.so
I: pybuild base:217: /usr/bin/python3 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/benchmarks
copying benchmarks/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/benchmarks
copying benchmarks/benchmarks.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/benchmarks
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio
copying skbio/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio
copying skbio/_base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio
copying skbio/test.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio
copying skbio/workflow.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment
copying skbio/alignment/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment
copying skbio/alignment/_indexing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment
copying skbio/alignment/_pairwise.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment
copying skbio/alignment/_repr.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment
copying skbio/alignment/_tabular_msa.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity
copying skbio/diversity/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity
copying skbio/diversity/_block.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity
copying skbio/diversity/_driver.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity
copying skbio/diversity/_util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io
copying skbio/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io
copying skbio/io/_exception.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io
copying skbio/io/_fileobject.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io
copying skbio/io/_iosources.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io
copying skbio/io/_warning.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io
copying skbio/io/registry.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io
copying skbio/io/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/metadata
copying skbio/metadata/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/metadata
copying skbio/metadata/_interval.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/metadata
copying skbio/metadata/_mixin.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/metadata
copying skbio/metadata/_repr.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/metadata
copying skbio/metadata/_testing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/metadata
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence
copying skbio/sequence/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence
copying skbio/sequence/_dna.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence
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copying skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
copying skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
copying skbio/stats/distance/tests/data/moving_pictures_dm.tsv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
copying skbio/stats/distance/tests/data/moving_pictures_mf.tsv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
copying skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
copying skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
copying skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
copying skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
copying skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/L&L_CA_data -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/PCoA_biplot_descriptors -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/PCoA_biplot_projected_descriptors -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/PCoA_sample_data -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/PCoA_sample_data_12dim -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_eigh_ref_3dim -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_fsvd_ref_3dim -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/PCoA_skbio -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example2_X -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example2_Y -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example2_biplot_scaling1 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example2_biplot_scaling2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example3_X -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example3_Y -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example3_biplot_scaling1 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example3_biplot_scaling2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/varechem.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
copying skbio/stats/ordination/tests/data/varespec.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
running build_ext
building 'skbio.metadata._intersection' extension
creating build/temp.linux-armhf-3.7
creating build/temp.linux-armhf-3.7/skbio
creating build/temp.linux-armhf-3.7/skbio/metadata
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c skbio/metadata/_intersection.c -o build/temp.linux-armhf-3.7/skbio/metadata/_intersection.o -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/skbio/metadata/_intersection.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/metadata/_intersection.cpython-37m-arm-linux-gnueabihf.so
building 'skbio.stats.__subsample' extension
creating build/temp.linux-armhf-3.7/skbio/stats
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c skbio/stats/__subsample.c -o build/temp.linux-armhf-3.7/skbio/stats/__subsample.o -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from skbio/stats/__subsample.c:250:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from skbio/stats/__subsample.c:250:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: '_import_array' defined but not used [-Wunused-function]
 1463 | _import_array(void)
      | ^~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/skbio/stats/__subsample.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/__subsample.cpython-37m-arm-linux-gnueabihf.so
building 'skbio.alignment._ssw_wrapper' extension
creating build/temp.linux-armhf-3.7/skbio/alignment
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c skbio/alignment/_ssw_wrapper.c -o build/temp.linux-armhf-3.7/skbio/alignment/_ssw_wrapper.o -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from skbio/alignment/_ssw_wrapper.c:256:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
In file included from skbio/alignment/_lib/ssw.h:17,
                 from skbio/alignment/_ssw_wrapper.c:258:
skbio/alignment/_lib/../../../debian/include/simde/x86/sse2.h: In function 'simde_mm_bsrli_si128':
skbio/alignment/_lib/../../../debian/include/simde/x86/sse2.h:808:22: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  808 |   for (int i = 0 ; i < (sizeof(r_.i8) / sizeof(r_.i8[0])) ; i++) {
      |                      ^
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from skbio/alignment/_ssw_wrapper.c:256:
At top level:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: '_import_array' defined but not used [-Wunused-function]
 1463 | _import_array(void)
      | ^~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/skbio/alignment/_ssw_wrapper.o -lssw -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment/_ssw_wrapper.cpython-37m-arm-linux-gnueabihf.so
building 'skbio.diversity._phylogenetic' extension
creating build/temp.linux-armhf-3.7/skbio/diversity
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c skbio/diversity/_phylogenetic.c -o build/temp.linux-armhf-3.7/skbio/diversity/_phylogenetic.o -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from skbio/diversity/_phylogenetic.c:242:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from skbio/diversity/_phylogenetic.c:242:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: '_import_array' defined but not used [-Wunused-function]
 1463 | _import_array(void)
      | ^~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/skbio/diversity/_phylogenetic.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/_phylogenetic.cpython-37m-arm-linux-gnueabihf.so
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build; python3.8 -m pytest 
============================= test session starts ==============================
platform linux -- Python 3.8.2, pytest-4.6.9, py-1.8.1, pluggy-0.13.0
rootdir: /<<PKGBUILDDIR>>
collected 0 items / 70 errors

==================================== ERRORS ====================================
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/alignment/tests/test_pairwise.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/tests/test_pairwise.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/alignment/tests/test_ssw.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/tests/test_ssw.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/alignment/tests/test_tabular_msa.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/tests/test_tabular_msa.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/alignment/tests/test_tabular_msa.py:21: in <module>
    from skbio import Sequence, DNA, RNA, Protein, TabularMSA
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/test_ace.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/test_ace.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/test_base.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/test_base.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/test_chao1.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/test_chao1.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/test_faith_pd.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/test_faith_pd.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/test_gini.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/test_gini.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/test_lladser.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/test_lladser.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests/test_unifrac.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests/test_unifrac.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/diversity/tests/test_block.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/tests/test_block.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/diversity/tests/test_driver.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/tests/test_driver.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/diversity/tests/test_util.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/tests/test_util.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_base.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_base.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_blast6.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_blast6.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_blast7.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_blast7.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/io/format/tests/test_blast7.py:15: in <module>
    from skbio.io import BLAST7FormatError
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_clustal.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_clustal.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/io/format/tests/test_clustal.py:13: in <module>
    from skbio import TabularMSA
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_embl.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_embl.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/io/format/tests/test_embl.py:12: in <module>
    import skbio.io
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_emptyfile.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_emptyfile.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/io/format/tests/test_emptyfile.py:12: in <module>
    from skbio.io.format.emptyfile import _empty_file_sniffer
skbio/io/format/emptyfile.py:30: in <module>
    from skbio.io import create_format
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_fasta.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_fasta.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/io/format/tests/test_fasta.py:17: in <module>
    from skbio import Sequence, DNA, RNA, Protein, TabularMSA
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_fastq.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_fastq.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/io/format/tests/test_fastq.py:15: in <module>
    from skbio import read, write, Sequence, DNA, RNA, Protein, TabularMSA
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_genbank.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_genbank.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/io/format/tests/test_genbank.py:12: in <module>
    from skbio import Protein, DNA, RNA, Sequence
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_gff3.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_gff3.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/io/format/tests/test_gff3.py:14: in <module>
    from skbio import DNA, Sequence
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_lsmat.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_lsmat.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/io/format/tests/test_lsmat.py:12: in <module>
    from skbio import DistanceMatrix
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_newick.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_newick.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/io/format/tests/test_newick.py:12: in <module>
    from skbio import TreeNode
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_ordination.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_ordination.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/io/format/tests/test_ordination.py:16: in <module>
    from skbio import OrdinationResults
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_phylip.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_phylip.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/io/format/tests/test_phylip.py:12: in <module>
    from skbio.io import PhylipFormatError
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_qseq.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_qseq.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/io/format/tests/test_qseq.py:11: in <module>
    from skbio import Sequence, DNA, RNA, Protein
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_sequence_feature_vocabulary.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_sequence_feature_vocabulary.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/io/format/tests/test_sequence_feature_vocabulary.py:13: in <module>
    from skbio.io import FileFormatError
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_stockholm.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_stockholm.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/io/format/tests/test_stockholm.py:15: in <module>
    from skbio import TabularMSA, Protein, DNA, RNA
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/io/tests/test_iosources.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/test_iosources.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/io/tests/test_registry.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/test_registry.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/io/tests/test_util.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/test_util.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/metadata/tests/test_intersection.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/tests/test_intersection.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/metadata/tests/test_interval.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/tests/test_interval.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/metadata/tests/test_mixin.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/tests/test_mixin.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_distance.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_distance.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_dna.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_dna.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/sequence/tests/test_dna.py:11: in <module>
    from skbio import DNA, RNA
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_genetic_code.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_genetic_code.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/sequence/tests/test_genetic_code.py:15: in <module>
    from skbio import Sequence, DNA, RNA, Protein, GeneticCode
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_grammared_sequence.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_grammared_sequence.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_nucleotide_sequences.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_nucleotide_sequences.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/sequence/tests/test_nucleotide_sequences.py:13: in <module>
    from skbio import DNA, RNA, Protein, GeneticCode
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_protein.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_protein.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/sequence/tests/test_protein.py:14: in <module>
    from skbio import Protein
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_rna.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_rna.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/sequence/tests/test_rna.py:11: in <module>
    from skbio import DNA, RNA
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_sequence.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_sequence.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/sequence/tests/test_sequence.py:22: in <module>
    import skbio.sequence.distance
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/test_anosim.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/test_anosim.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/test_base.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/test_base.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/test_bioenv.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/test_bioenv.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/test_mantel.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/test_mantel.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/test_permanova.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/test_permanova.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/test_permdisp.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/test_permdisp.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/stats/evolve/tests/test_hommola.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/evolve/tests/test_hommola.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/stats/evolve/__init__.py:33: in <module>
    from ._hommola import hommola_cospeciation
skbio/stats/evolve/_hommola.py:12: in <module>
    from skbio import DistanceMatrix
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/stats/ordination/__init__.py:135: in <module>
    from ._principal_coordinate_analysis import pcoa, pcoa_biplot
skbio/stats/ordination/_principal_coordinate_analysis.py:17: in <module>
    from skbio.stats.distance import DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/test_correspondence_analysis.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/test_correspondence_analysis.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/stats/ordination/__init__.py:135: in <module>
    from ._principal_coordinate_analysis import pcoa, pcoa_biplot
skbio/stats/ordination/_principal_coordinate_analysis.py:17: in <module>
    from skbio.stats.distance import DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/test_ordination_results.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/test_ordination_results.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/stats/ordination/__init__.py:135: in <module>
    from ._principal_coordinate_analysis import pcoa, pcoa_biplot
skbio/stats/ordination/_principal_coordinate_analysis.py:17: in <module>
    from skbio.stats.distance import DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/test_principal_coordinate_analysis.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/test_principal_coordinate_analysis.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/stats/ordination/__init__.py:135: in <module>
    from ._principal_coordinate_analysis import pcoa, pcoa_biplot
skbio/stats/ordination/_principal_coordinate_analysis.py:17: in <module>
    from skbio.stats.distance import DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/test_redundancy_analysis.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/test_redundancy_analysis.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/stats/ordination/__init__.py:135: in <module>
    from ._principal_coordinate_analysis import pcoa, pcoa_biplot
skbio/stats/ordination/_principal_coordinate_analysis.py:17: in <module>
    from skbio.stats.distance import DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/test_util.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/test_util.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/stats/ordination/__init__.py:135: in <module>
    from ._principal_coordinate_analysis import pcoa, pcoa_biplot
skbio/stats/ordination/_principal_coordinate_analysis.py:17: in <module>
    from skbio.stats.distance import DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/test_composition.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/test_composition.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/test_gradient.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/test_gradient.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/test_misc.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/test_misc.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/test_power.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/test_power.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/test_subsample.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/test_subsample.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/tests/test_base.py __
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/tests/test_base.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/tests/test_workflow.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/tests/test_workflow.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/tree/tests/test_majority_rule.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/tests/test_majority_rule.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/tree/tests/test_nj.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/tests/test_nj.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/tree/tests/test_tree.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/tests/test_tree.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/util/tests/test_decorator.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/util/tests/test_decorator.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/util/tests/test_misc.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/util/tests/test_misc.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
_ ERROR collecting .pybuild/cpython3_3.8_skbio/build/skbio/util/tests/test_testing.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/util/tests/test_testing.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
skbio/util/tests/test_testing.py:17: in <module>
    from skbio import OrdinationResults
skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
skbio/io/__init__.py:246: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.8/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
skbio/stats/distance/__init__.py:198: in <module>
    from ._permdisp import permdisp
skbio/stats/distance/_permdisp.py:16: in <module>
    import hdmedians as hd
/usr/lib/python3/dist-packages/hdmedians/__init__.py:6: in <module>
    from .geomedian import geomedian, nangeomedian
E   ModuleNotFoundError: No module named 'hdmedians.geomedian'
=============================== warnings summary ===============================
skbio/sequence/_sequence.py:28
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/_sequence.py:28: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working
    collections.Sequence, SkbioObject):

skbio/sequence/tests/test_sequence.py:14
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_sequence.py:14: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working
    from collections import Hashable

-- Docs: https://docs.pytest.org/en/latest/warnings.html
!!!!!!!!!!!!!!!!!!! Interrupted: 70 errors during collection !!!!!!!!!!!!!!!!!!!
==================== 2 warnings, 70 error in 18.25 seconds =====================
E: pybuild pybuild:341: test: plugin distutils failed with: exit code=2: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build; python3.8 -m pytest 
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.8 3.7" returned exit code 13
make: *** [debian/rules:13: build-arch] Error 25
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2020-03-05T06:17:32Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 37412
Build-Time: 93
Distribution: bullseye-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 663
Job: python-skbio_0.5.5-7
Machine Architecture: armhf
Package: python-skbio
Package-Time: 777
Source-Version: 0.5.5-7
Space: 37412
Status: attempted
Version: 0.5.5-7
--------------------------------------------------------------------------------
Finished at 2020-03-05T06:17:32Z
Build needed 00:12:57, 37412k disk space