python-pyvcf →
0.6.8+git20170215.476169c-8 →
armhf → 2021-10-17 06:35:33
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
Negative repeat count does nothing at /usr/share/perl5/Sbuild/Build.pm line 2740.
+==============================================================================+
Negative repeat count does nothing at /usr/share/perl5/Sbuild/Base.pm line 124.
| python-pyvcf 0.6.8+git20170215.476169c-8 (armhf) Sun, 17 Oct 2021 06:22:18 +0000 |
+==============================================================================+
Package: python-pyvcf
Version: 0.6.8+git20170215.476169c-8
Source Version: 0.6.8+git20170215.476169c-8
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-13c1f01b-627d-43ce-83e4-4232b99f0c48' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.9 MB in 25s (1017 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-pyvcf' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-pyvcf.git
Please use:
git clone https://salsa.debian.org/med-team/python-pyvcf.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 948 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main python-pyvcf 0.6.8+git20170215.476169c-8 (dsc) [2433 B]
Get:2 http://172.17.0.1/private bookworm-staging/main python-pyvcf 0.6.8+git20170215.476169c-8 (tar) [936 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main python-pyvcf 0.6.8+git20170215.476169c-8 (diff) [9988 B]
Fetched 948 kB in 0s (5772 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-pyvcf-KoiVeZ/python-pyvcf-0.6.8+git20170215.476169c' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-pyvcf-KoiVeZ' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-KI3eNz/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-KI3eNz/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-KI3eNz/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-KI3eNz/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-KI3eNz/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-KI3eNz/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-KI3eNz/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-KI3eNz/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-KI3eNz/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2924 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-KI3eNz/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-KI3eNz/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 35 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-KI3eNz/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (17.6 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12484 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, cython3, python3-all-dev, python3-setuptools, python3-pytest, python3-pysam
Filtered Build-Depends: debhelper-compat (= 13), dh-python, cython3, python3-all-dev, python3-setuptools, python3-pytest, python3-pysam
dpkg-deb: building package 'sbuild-build-depends-python-pyvcf-dummy' in '/<<BUILDDIR>>/resolver-KI3eNz/apt_archive/sbuild-build-depends-python-pyvcf-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-pyvcf-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-KI3eNz/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-KI3eNz/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-KI3eNz/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-KI3eNz/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-KI3eNz/apt_archive ./ Sources [544 B]
Get:5 copy:/<<BUILDDIR>>/resolver-KI3eNz/apt_archive ./ Packages [613 B]
Fetched 2490 B in 1s (3334 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-KI3eNz/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-KI3eNz/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install python-pyvcf build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1
libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libexpat1
libexpat1-dev libffi8 libfile-stripnondeterminism-perl libhts3 libhtscodecs2
libicu67 libjs-jquery libjs-sphinxdoc libjs-underscore libmagic-mgc
libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev
libpython3.9-minimal libpython3.9-stdlib librtmp1 libsigsegv2 libssh2-1
libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types
po-debconf python3 python3-all python3-all-dev python3-attr python3-dev
python3-distutils python3-importlib-metadata python3-iniconfig
python3-lib2to3 python3-minimal python3-more-itertools python3-packaging
python3-pkg-resources python3-pluggy python3-py python3-pyparsing
python3-pysam python3-pytest python3-setuptools python3-six python3-toml
python3-zipp python3.9 python3.9-dev python3.9-minimal sensible-utils
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cython-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc
subversion python-pyparsing-doc python-setuptools-doc python3.9-venv
python3.9-doc binfmt-support
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl javascript-common
publicsuffix libltdl-dev libmail-sendmail-perl python3-pygments
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1
libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libexpat1
libexpat1-dev libffi8 libfile-stripnondeterminism-perl libhts3 libhtscodecs2
libicu67 libjs-jquery libjs-sphinxdoc libjs-underscore libmagic-mgc
libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev
libpython3.9-minimal libpython3.9-stdlib librtmp1 libsigsegv2 libssh2-1
libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types
po-debconf python3 python3-all python3-all-dev python3-attr python3-dev
python3-distutils python3-importlib-metadata python3-iniconfig
python3-lib2to3 python3-minimal python3-more-itertools python3-packaging
python3-pkg-resources python3-pluggy python3-py python3-pyparsing
python3-pysam python3-pytest python3-setuptools python3-six python3-toml
python3-zipp python3.9 python3.9-dev python3.9-minimal
sbuild-build-depends-python-pyvcf-dummy sensible-utils zlib1g-dev
0 upgraded, 84 newly installed, 0 to remove and 35 not upgraded.
Need to get 33.7 MB of archives.
After this operation, 127 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-KI3eNz/apt_archive ./ sbuild-build-depends-python-pyvcf-dummy 0.invalid.0 [892 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-3 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.7-4+rpi1 [794 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-2 [80.3 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.7-4+rpi1 [1632 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf media-types all 4.0.0 [30.3 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf libffi8 armhf 3.4.2-3 [21.3 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.7-4+rpi1 [1618 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf python3.9 armhf 3.9.7-4+rpi1 [480 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf python3 armhf 3.9.2-3 [37.9 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.4-2 [819 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf cython3 armhf 0.29.21-3+b1 [1234 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.7-1 [79.4 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf python3-distutils all 3.9.7-1 [146 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf dh-python all 4.20201102+nmu1 [99.4 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.74.0-1.3 [301 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf libdeflate0 armhf 1.8-1 [44.1 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.1-2 [135 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf libhtscodecs2 armhf 1.1.1-3 [49.8 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf libhts3 armhf 1.13+ds-2 [339 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf libjs-underscore all 1.9.1~dfsg-4 [100 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.2.0-4 [137 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.7-4+rpi1 [1416 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-dev armhf 3.9.7-4+rpi1 [3060 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf libpython3-dev armhf 3.9.2-3 [21.7 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.9.2-3 [1068 B]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf python3-all armhf 3.9.2-3 [1056 B]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf python3.9-dev armhf 3.9.7-4+rpi1 [501 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf python3-dev armhf 3.9.2-3 [24.8 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf python3-all-dev armhf 3.9.2-3 [1064 B]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf python3-attr all 20.3.0-1 [52.9 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf python3-six all 1.16.0-2 [17.5 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf python3-more-itertools all 4.2.0-3 [42.7 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf python3-zipp all 1.0.0-3 [6060 B]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf python3-importlib-metadata all 4.6.4-1 [22.5 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf python3-iniconfig all 1.1.1-1 [6308 B]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf python3-pyparsing all 2.4.7-1 [109 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf python3-packaging all 21.0-1 [33.5 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf python3-pkg-resources all 58.2.0-1 [192 kB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf python3-pluggy all 0.13.0-6 [22.3 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf python3-py all 1.10.0-1 [94.2 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf python3-pysam armhf 0.15.4+ds-3+b1 [1344 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf python3-toml all 0.10.2-1 [16.2 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf python3-pytest all 6.2.5-1 [218 kB]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf python3-setuptools all 58.2.0-1 [396 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 33.7 MB in 3s (11.9 MB/s)
Selecting previously unselected package bsdextrautils.
(Reading database ... 12484 files and directories currently installed.)
Preparing to unpack .../0-bsdextrautils_2.37.2-3_armhf.deb ...
Unpacking bsdextrautils (2.37.2-3) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../1-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../2-groff-base_1.22.4-7_armhf.deb ...
Unpacking groff-base (1.22.4-7) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../3-libpipeline1_1.5.3-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.3-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../4-man-db_2.9.4-2_armhf.deb ...
Unpacking man-db (2.9.4-2) ...
Selecting previously unselected package libpython3.9-minimal:armhf.
Preparing to unpack .../5-libpython3.9-minimal_3.9.7-4+rpi1_armhf.deb ...
Unpacking libpython3.9-minimal:armhf (3.9.7-4+rpi1) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../6-libexpat1_2.4.1-2_armhf.deb ...
Unpacking libexpat1:armhf (2.4.1-2) ...
Selecting previously unselected package python3.9-minimal.
Preparing to unpack .../7-python3.9-minimal_3.9.7-4+rpi1_armhf.deb ...
Unpacking python3.9-minimal (3.9.7-4+rpi1) ...
Setting up libpython3.9-minimal:armhf (3.9.7-4+rpi1) ...
Setting up libexpat1:armhf (2.4.1-2) ...
Setting up python3.9-minimal (3.9.7-4+rpi1) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 13351 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.9.2-3_armhf.deb ...
Unpacking python3-minimal (3.9.2-3) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_4.0.0_all.deb ...
Unpacking media-types (4.0.0) ...
Selecting previously unselected package libffi8:armhf.
Preparing to unpack .../2-libffi8_3.4.2-3_armhf.deb ...
Unpacking libffi8:armhf (3.4.2-3) ...
Selecting previously unselected package libmpdec3:armhf.
Preparing to unpack .../3-libmpdec3_2.5.1-2+rpi1_armhf.deb ...
Unpacking libmpdec3:armhf (2.5.1-2+rpi1) ...
Selecting previously unselected package libpython3.9-stdlib:armhf.
Preparing to unpack .../4-libpython3.9-stdlib_3.9.7-4+rpi1_armhf.deb ...
Unpacking libpython3.9-stdlib:armhf (3.9.7-4+rpi1) ...
Selecting previously unselected package python3.9.
Preparing to unpack .../5-python3.9_3.9.7-4+rpi1_armhf.deb ...
Unpacking python3.9 (3.9.7-4+rpi1) ...
Selecting previously unselected package libpython3-stdlib:armhf.
Preparing to unpack .../6-libpython3-stdlib_3.9.2-3_armhf.deb ...
Unpacking libpython3-stdlib:armhf (3.9.2-3) ...
Setting up python3-minimal (3.9.2-3) ...
Selecting previously unselected package python3.
(Reading database ... 13754 files and directories currently installed.)
Preparing to unpack .../00-python3_3.9.2-3_armhf.deb ...
Unpacking python3 (3.9.2-3) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../01-sensible-utils_0.0.17_all.deb ...
Unpacking sensible-utils (0.0.17) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../02-libmagic-mgc_1%3a5.39-3_armhf.deb ...
Unpacking libmagic-mgc (1:5.39-3) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../03-libmagic1_1%3a5.39-3_armhf.deb ...
Unpacking libmagic1:armhf (1:5.39-3) ...
Selecting previously unselected package file.
Preparing to unpack .../04-file_1%3a5.39-3_armhf.deb ...
Unpacking file (1:5.39-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../05-gettext-base_0.21-4_armhf.deb ...
Unpacking gettext-base (0.21-4) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../06-libsigsegv2_2.13-1_armhf.deb ...
Unpacking libsigsegv2:armhf (2.13-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../07-m4_1.4.18-5_armhf.deb ...
Unpacking m4 (1.4.18-5) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../08-autoconf_2.71-2_all.deb ...
Unpacking autoconf (2.71-2) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../09-autotools-dev_20180224.1+nmu1_all.deb ...
Unpacking autotools-dev (20180224.1+nmu1) ...
Selecting previously unselected package automake.
Preparing to unpack .../10-automake_1%3a1.16.4-2_all.deb ...
Unpacking automake (1:1.16.4-2) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../11-autopoint_0.21-4_all.deb ...
Unpacking autopoint (0.21-4) ...
Selecting previously unselected package cython3.
Preparing to unpack .../12-cython3_0.29.21-3+b1_armhf.deb ...
Unpacking cython3 (0.29.21-3+b1) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../13-libdebhelper-perl_13.5.2_all.deb ...
Unpacking libdebhelper-perl (13.5.2) ...
Selecting previously unselected package libtool.
Preparing to unpack .../14-libtool_2.4.6-15_all.deb ...
Unpacking libtool (2.4.6-15) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../15-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../16-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../17-libsub-override-perl_0.09-2_all.deb ...
Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../18-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../19-dh-strip-nondeterminism_1.12.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.12.0-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../20-libelf1_0.185-2_armhf.deb ...
Unpacking libelf1:armhf (0.185-2) ...
Selecting previously unselected package dwz.
Preparing to unpack .../21-dwz_0.14-1_armhf.deb ...
Unpacking dwz (0.14-1) ...
Selecting previously unselected package libicu67:armhf.
Preparing to unpack .../22-libicu67_67.1-7_armhf.deb ...
Unpacking libicu67:armhf (67.1-7) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../23-libxml2_2.9.12+dfsg-5_armhf.deb ...
Unpacking libxml2:armhf (2.9.12+dfsg-5) ...
Selecting previously unselected package gettext.
Preparing to unpack .../24-gettext_0.21-4_armhf.deb ...
Unpacking gettext (0.21-4) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../25-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../26-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../27-debhelper_13.5.2_all.deb ...
Unpacking debhelper (13.5.2) ...
Selecting previously unselected package python3-lib2to3.
Preparing to unpack .../28-python3-lib2to3_3.9.7-1_all.deb ...
Unpacking python3-lib2to3 (3.9.7-1) ...
Selecting previously unselected package python3-distutils.
Preparing to unpack .../29-python3-distutils_3.9.7-1_all.deb ...
Unpacking python3-distutils (3.9.7-1) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../30-dh-python_4.20201102+nmu1_all.deb ...
Unpacking dh-python (4.20201102+nmu1) ...
Selecting previously unselected package libbrotli1:armhf.
Preparing to unpack .../31-libbrotli1_1.0.9-2+b1_armhf.deb ...
Unpacking libbrotli1:armhf (1.0.9-2+b1) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../32-libnghttp2-14_1.43.0-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.43.0-1) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../33-libpsl5_0.21.0-1.2_armhf.deb ...
Unpacking libpsl5:armhf (0.21.0-1.2) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../34-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../35-libssh2-1_1.10.0-2_armhf.deb ...
Unpacking libssh2-1:armhf (1.10.0-2) ...
Selecting previously unselected package libcurl3-gnutls:armhf.
Preparing to unpack .../36-libcurl3-gnutls_7.74.0-1.3_armhf.deb ...
Unpacking libcurl3-gnutls:armhf (7.74.0-1.3) ...
Selecting previously unselected package libdeflate0:armhf.
Preparing to unpack .../37-libdeflate0_1.8-1_armhf.deb ...
Unpacking libdeflate0:armhf (1.8-1) ...
Selecting previously unselected package libexpat1-dev:armhf.
Preparing to unpack .../38-libexpat1-dev_2.4.1-2_armhf.deb ...
Unpacking libexpat1-dev:armhf (2.4.1-2) ...
Selecting previously unselected package libhtscodecs2:armhf.
Preparing to unpack .../39-libhtscodecs2_1.1.1-3_armhf.deb ...
Unpacking libhtscodecs2:armhf (1.1.1-3) ...
Selecting previously unselected package libhts3:armhf.
Preparing to unpack .../40-libhts3_1.13+ds-2_armhf.deb ...
Unpacking libhts3:armhf (1.13+ds-2) ...
Selecting previously unselected package libjs-jquery.
Preparing to unpack .../41-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ...
Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ...
Selecting previously unselected package libjs-underscore.
Preparing to unpack .../42-libjs-underscore_1.9.1~dfsg-4_all.deb ...
Unpacking libjs-underscore (1.9.1~dfsg-4) ...
Selecting previously unselected package libjs-sphinxdoc.
Preparing to unpack .../43-libjs-sphinxdoc_4.2.0-4_all.deb ...
Unpacking libjs-sphinxdoc (4.2.0-4) ...
Selecting previously unselected package libpython3.9:armhf.
Preparing to unpack .../44-libpython3.9_3.9.7-4+rpi1_armhf.deb ...
Unpacking libpython3.9:armhf (3.9.7-4+rpi1) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../45-zlib1g-dev_1%3a1.2.11.dfsg-2_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Selecting previously unselected package libpython3.9-dev:armhf.
Preparing to unpack .../46-libpython3.9-dev_3.9.7-4+rpi1_armhf.deb ...
Unpacking libpython3.9-dev:armhf (3.9.7-4+rpi1) ...
Selecting previously unselected package libpython3-dev:armhf.
Preparing to unpack .../47-libpython3-dev_3.9.2-3_armhf.deb ...
Unpacking libpython3-dev:armhf (3.9.2-3) ...
Selecting previously unselected package libpython3-all-dev:armhf.
Preparing to unpack .../48-libpython3-all-dev_3.9.2-3_armhf.deb ...
Unpacking libpython3-all-dev:armhf (3.9.2-3) ...
Selecting previously unselected package python3-all.
Preparing to unpack .../49-python3-all_3.9.2-3_armhf.deb ...
Unpacking python3-all (3.9.2-3) ...
Selecting previously unselected package python3.9-dev.
Preparing to unpack .../50-python3.9-dev_3.9.7-4+rpi1_armhf.deb ...
Unpacking python3.9-dev (3.9.7-4+rpi1) ...
Selecting previously unselected package python3-dev.
Preparing to unpack .../51-python3-dev_3.9.2-3_armhf.deb ...
Unpacking python3-dev (3.9.2-3) ...
Selecting previously unselected package python3-all-dev.
Preparing to unpack .../52-python3-all-dev_3.9.2-3_armhf.deb ...
Unpacking python3-all-dev (3.9.2-3) ...
Selecting previously unselected package python3-attr.
Preparing to unpack .../53-python3-attr_20.3.0-1_all.deb ...
Unpacking python3-attr (20.3.0-1) ...
Selecting previously unselected package python3-six.
Preparing to unpack .../54-python3-six_1.16.0-2_all.deb ...
Unpacking python3-six (1.16.0-2) ...
Selecting previously unselected package python3-more-itertools.
Preparing to unpack .../55-python3-more-itertools_4.2.0-3_all.deb ...
Unpacking python3-more-itertools (4.2.0-3) ...
Selecting previously unselected package python3-zipp.
Preparing to unpack .../56-python3-zipp_1.0.0-3_all.deb ...
Unpacking python3-zipp (1.0.0-3) ...
Selecting previously unselected package python3-importlib-metadata.
Preparing to unpack .../57-python3-importlib-metadata_4.6.4-1_all.deb ...
Unpacking python3-importlib-metadata (4.6.4-1) ...
Selecting previously unselected package python3-iniconfig.
Preparing to unpack .../58-python3-iniconfig_1.1.1-1_all.deb ...
Unpacking python3-iniconfig (1.1.1-1) ...
Selecting previously unselected package python3-pyparsing.
Preparing to unpack .../59-python3-pyparsing_2.4.7-1_all.deb ...
Unpacking python3-pyparsing (2.4.7-1) ...
Selecting previously unselected package python3-packaging.
Preparing to unpack .../60-python3-packaging_21.0-1_all.deb ...
Unpacking python3-packaging (21.0-1) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../61-python3-pkg-resources_58.2.0-1_all.deb ...
Unpacking python3-pkg-resources (58.2.0-1) ...
Selecting previously unselected package python3-pluggy.
Preparing to unpack .../62-python3-pluggy_0.13.0-6_all.deb ...
Unpacking python3-pluggy (0.13.0-6) ...
Selecting previously unselected package python3-py.
Preparing to unpack .../63-python3-py_1.10.0-1_all.deb ...
Unpacking python3-py (1.10.0-1) ...
Selecting previously unselected package python3-pysam.
Preparing to unpack .../64-python3-pysam_0.15.4+ds-3+b1_armhf.deb ...
Unpacking python3-pysam (0.15.4+ds-3+b1) ...
Selecting previously unselected package python3-toml.
Preparing to unpack .../65-python3-toml_0.10.2-1_all.deb ...
Unpacking python3-toml (0.10.2-1) ...
Selecting previously unselected package python3-pytest.
Preparing to unpack .../66-python3-pytest_6.2.5-1_all.deb ...
Unpacking python3-pytest (6.2.5-1) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../67-python3-setuptools_58.2.0-1_all.deb ...
Unpacking python3-setuptools (58.2.0-1) ...
Selecting previously unselected package sbuild-build-depends-python-pyvcf-dummy.
Preparing to unpack .../68-sbuild-build-depends-python-pyvcf-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-python-pyvcf-dummy (0.invalid.0) ...
Setting up libhtscodecs2:armhf (1.1.1-3) ...
Setting up media-types (4.0.0) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up bsdextrautils (2.37.2-3) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libicu67:armhf (67.1-7) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.5.2) ...
Setting up libbrotli1:armhf (1.0.9-2+b1) ...
Setting up libnghttp2-14:armhf (1.43.0-1) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up libdeflate0:armhf (1.8-1) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.39-3) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libexpat1-dev:armhf (2.4.1-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up autopoint (0.21-4) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up libffi8:armhf (3.4.2-3) ...
Setting up sensible-utils (0.0.17) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libmpdec3:armhf (2.5.1-2+rpi1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.10.0-2) ...
Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ...
Setting up libelf1:armhf (0.185-2) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up libpython3.9-stdlib:armhf (3.9.7-4+rpi1) ...
Setting up libpython3-stdlib:armhf (3.9.2-3) ...
Setting up libjs-underscore (1.9.1~dfsg-4) ...
Setting up libfile-stripnondeterminism-perl (1.12.0-1) ...
Setting up gettext (0.21-4) ...
Setting up libtool (2.4.6-15) ...
Setting up m4 (1.4.18-5) ...
Setting up libcurl3-gnutls:armhf (7.74.0-1.3) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libpython3.9:armhf (3.9.7-4+rpi1) ...
Setting up libjs-sphinxdoc (4.2.0-4) ...
Setting up autoconf (2.71-2) ...
Setting up dh-strip-nondeterminism (1.12.0-1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-7) ...
Setting up python3.9 (3.9.7-4+rpi1) ...
Setting up automake (1:1.16.4-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libhts3:armhf (1.13+ds-2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libpython3.9-dev:armhf (3.9.7-4+rpi1) ...
Setting up python3 (3.9.2-3) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-six (1.16.0-2) ...
Setting up dh-autoreconf (20) ...
Setting up python3-pyparsing (2.4.7-1) ...
Setting up cython3 (0.29.21-3+b1) ...
Setting up python3-toml (0.10.2-1) ...
Setting up python3.9-dev (3.9.7-4+rpi1) ...
Setting up python3-lib2to3 (3.9.7-1) ...
Setting up python3-pkg-resources (58.2.0-1) ...
Setting up python3-distutils (3.9.7-1) ...
Setting up dh-python (4.20201102+nmu1) ...
Setting up python3-more-itertools (4.2.0-3) ...
Setting up python3-iniconfig (1.1.1-1) ...
Setting up python3-attr (20.3.0-1) ...
Setting up python3-pysam (0.15.4+ds-3+b1) ...
Setting up libpython3-dev:armhf (3.9.2-3) ...
Setting up python3-setuptools (58.2.0-1) ...
Setting up python3-py (1.10.0-1) ...
Setting up python3-all (3.9.2-3) ...
Setting up debhelper (13.5.2) ...
Setting up python3-zipp (1.0.0-3) ...
Setting up python3-packaging (21.0-1) ...
Setting up libpython3-all-dev:armhf (3.9.2-3) ...
Setting up python3-dev (3.9.2-3) ...
Setting up python3-all-dev (3.9.2-3) ...
Setting up python3-importlib-metadata (4.6.4-1) ...
Setting up python3-pluggy (0.13.0-6) ...
Setting up python3-pytest (6.2.5-1) ...
Setting up sbuild-build-depends-python-pyvcf-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-9+rpi1 gcc-10_10.3.0-9+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-4+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.51 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-3 bsdutils_1:2.37.2-1 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-9+rpi1 cython3_0.29.21-3+b1 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-python_4.20201102+nmu1 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-9+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-9+rpi1 gcc-10-base_10.3.0-9+rpi1 gcc-11-base_11.2.0-4+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libasan6_11.2.0-4+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-4+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.5-1 libaudit1_1:3.0.5-1 libbinutils_2.37-5+rpi1 libblkid1_2.37.2-1 libbrotli1_1.0.9-2+b1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-4+rpi1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libcurl3-gnutls_7.74.0-1.3 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdeflate0_1.8-1 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libexpat1_2.4.1-2 libexpat1-dev_2.4.1-2 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libffi8_3.4.2-3 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-10-dev_10.3.0-9+rpi1 libgcc-s1_11.2.0-4+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-4+rpi1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libhts3_1.13+ds-2 libhtscodecs2_1.1.1-3 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.23-1 libjs-jquery_3.5.1+dfsg+~3.5.5-7 libjs-sphinxdoc_4.2.0-4 libjs-underscore_1.9.1~dfsg-4 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-1 libmpc3_1.2.0-1 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-2 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-5 libpipeline1_1.5.3-1 libpsl5_0.21.0-1.2 libpython3-all-dev_3.9.2-3 libpython3-dev_3.9.2-3 libpython3-stdlib_3.9.2-3 libpython3.9_3.9.7-4+rpi1 libpython3.9-dev_3.9.7-4+rpi1 libpython3.9-minimal_3.9.7-4+rpi1 libpython3.9-stdlib_3.9.7-4+rpi1 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-1 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssh2-1_1.10.0-2 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-4+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.9-1+rpi1 libtasn1-6_4.17.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-4+rpi1 libuchardet0_0.0.7-1 libudev1_247.9-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 mount_2.37.2-1 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-5 perl-base_5.32.1-5 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python3_3.9.2-3 python3-all_3.9.2-3 python3-all-dev_3.9.2-3 python3-attr_20.3.0-1 python3-dev_3.9.2-3 python3-distutils_3.9.7-1 python3-importlib-metadata_4.6.4-1 python3-iniconfig_1.1.1-1 python3-lib2to3_3.9.7-1 python3-minimal_3.9.2-3 python3-more-itertools_4.2.0-3 python3-packaging_21.0-1 python3-pkg-resources_58.2.0-1 python3-pluggy_0.13.0-6 python3-py_1.10.0-1 python3-pyparsing_2.4.7-1 python3-pysam_0.15.4+ds-3+b1 python3-pytest_6.2.5-1 python3-setuptools_58.2.0-1 python3-six_1.16.0-2 python3-toml_0.10.2-1 python3-zipp_1.0.0-3 python3.9_3.9.7-4+rpi1 python3.9-dev_3.9.7-4+rpi1 python3.9-minimal_3.9.7-4+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-pyvcf-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021a-1 util-linux_2.37.2-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.StslW3w5/trustedkeys.kbx': General error
gpgv: Signature made Fri Oct 15 07:24:52 2021 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "nilesh@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-pyvcf_0.6.8+git20170215.476169c-8.dsc
dpkg-source: info: extracting python-pyvcf in /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c
dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz
dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c-8.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix-setuptools.patch
dpkg-source: info: applying 2to3.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-13c1f01b-627d-43ce-83e4-4232b99f0c48
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-pyvcf
dpkg-buildpackage: info: source version 0.6.8+git20170215.476169c-8
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py clean
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead
warnings.warn(
running clean
removing '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py config
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead
warnings.warn(
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead
warnings.warn(
running build
running build_py
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf
copying vcf/__init__.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf
copying vcf/filters.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf
copying vcf/model.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf
copying vcf/parser.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf
copying vcf/sample_filter.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf
copying vcf/utils.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/__init__.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/prof.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/test_vcf.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
running egg_info
creating PyVCF.egg-info
writing PyVCF.egg-info/PKG-INFO
writing dependency_links to PyVCF.egg-info/dependency_links.txt
writing entry points to PyVCF.egg-info/entry_points.txt
writing requirements to PyVCF.egg-info/requires.txt
writing top-level names to PyVCF.egg-info/top_level.txt
writing manifest file 'PyVCF.egg-info/SOURCES.txt'
reading manifest file 'PyVCF.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'PyVCF.egg-info/SOURCES.txt'
copying vcf/cparse.pyx -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf
copying vcf/test/1kg.sites.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/FT.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/bad-info-character.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/bcftools.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/contig_idonly.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/example-4.0.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/example-4.1-bnd.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/example-4.1-info-multiple-values.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/example-4.1-ploidy.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/example-4.1-sv.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/example-4.1.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/example-4.2.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/freebayes.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/gatk.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/gatk_26_meta.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/gonl.chr20.release4.gtc.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/info-type-character.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/issue-140-file1.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/issue-140-file2.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/issue-140-file3.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/issue-16.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/issue-214.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/issue-254.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/issue_49.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/metadata-whitespace.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/mixed-filtering.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/null_genotype_mono.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/parse-meta-line.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/samples-space.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/samtools.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/strelka.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/string_as_flag.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/uncalled_genotypes.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/walk_left.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/walk_refcall.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/1kg.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/issue-201.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/tb.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/issue-201.vcf.gz.tbi -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
copying vcf/test/tb.vcf.gz.tbi -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test
running build_ext
cythoning vcf/cparse.pyx to vcf/cparse.c
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/vcf/cparse.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
warning: vcf/cparse.pyx:29:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
warning: vcf/cparse.pyx:29:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
warning: vcf/cparse.pyx:29:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
warning: vcf/cparse.pyx:29:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
building 'vcf.cparse' extension
creating build
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/vcf
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c vcf/cparse.c -o build/temp.linux-armhf-3.9/vcf/cparse.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/vcf/cparse.o -o /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/cparse.cpython-39-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.9
copying and adjusting scripts/vcf_melt -> build/scripts-3.9
copying and adjusting scripts/vcf_filter.py -> build/scripts-3.9
copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-3.9
changing mode of build/scripts-3.9/vcf_melt from 644 to 755
changing mode of build/scripts-3.9/vcf_filter.py from 644 to 755
changing mode of build/scripts-3.9/vcf_sample_filter.py from 644 to 755
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:232: cd /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build; python3.9 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.9.7, pytest-6.2.5, py-1.10.0, pluggy-0.13.0
rootdir: /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c
collected 104 items
vcf/test/test_vcf.py ................................................... [ 49%]
........................................ss.ss........ [100%]
=============================== warnings summary ===============================
vcf/parser.py:278
/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/parser.py:278: DeprecationWarning: invalid escape sequence \[
self._alt_pattern = re.compile('[\[\]]')
vcf/parser.py:536
/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/parser.py:536: DeprecationWarning: invalid escape sequence \[
remoteOrientation = (re.search('\[', str) is not None)
-- Docs: https://docs.pytest.org/en/stable/warnings.html
================= 100 passed, 4 skipped, 2 warnings in 52.05s ==================
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py install --root /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead
warnings.warn(
running install
running build
running build_py
running egg_info
writing PyVCF.egg-info/PKG-INFO
writing dependency_links to PyVCF.egg-info/dependency_links.txt
writing entry points to PyVCF.egg-info/entry_points.txt
writing requirements to PyVCF.egg-info/requires.txt
writing top-level names to PyVCF.egg-info/top_level.txt
reading manifest file 'PyVCF.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'PyVCF.egg-info/SOURCES.txt'
running build_ext
skipping 'vcf/cparse.c' Cython extension (up-to-date)
running build_scripts
running install_lib
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/__init__.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/filters.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/model.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/parser.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/sample_filter.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/utils.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/__init__.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/prof.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/test_vcf.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/1kg.sites.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/FT.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/bad-info-character.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/bcftools.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/contig_idonly.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/example-4.0.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/example-4.1-bnd.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/example-4.1-info-multiple-values.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/example-4.1-ploidy.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/example-4.1-sv.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/example-4.1.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/example-4.2.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/freebayes.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/gatk.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/gatk_26_meta.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/info-type-character.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/issue-140-file1.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/issue-140-file2.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/issue-140-file3.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/issue-16.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/issue-214.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/issue-254.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/issue_49.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/metadata-whitespace.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/mixed-filtering.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/null_genotype_mono.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/parse-meta-line.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/samples-space.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/samtools.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/strelka.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/string_as_flag.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/uncalled_genotypes.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/walk_left.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/walk_refcall.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/1kg.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/issue-201.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/tb.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/issue-201.vcf.gz.tbi -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/tb.vcf.gz.tbi -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/__pycache__/__init__.cpython-39.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/__pycache__/test_vcf.cpython-39-pytest-6.2.5.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/cparse.pyx -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/cparse.cpython-39-arm-linux-gnueabihf.so -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/__pycache__/__init__.cpython-39.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/__pycache__/parser.cpython-39.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/__pycache__/model.cpython-39.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/__pycache__/filters.cpython-39.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/__pycache__/sample_filter.cpython-39.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/__pycache__/utils.cpython-39.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/__pycache__
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/filters.py to filters.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/model.py to model.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/parser.py to parser.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/sample_filter.py to sample_filter.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/utils.py to utils.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test/prof.py to prof.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test/test_vcf.py to test_vcf.cpython-39.pyc
running install_egg_info
Copying PyVCF.egg-info to /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/PyVCF-0.6.8.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin
copying build/scripts-3.9/vcf_melt -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin
copying build/scripts-3.9/vcf_filter.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin
copying build/scripts-3.9/vcf_sample_filter.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin
changing mode of /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_melt to 755
changing mode of /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_filter.py to 755
changing mode of /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_sample_filter.py to 755
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c'
dh_install
# move testdata to separate dir
mkdir -p debian/python-pyvcf-examples/usr/share/doc/python3-vcf
mv `find debian/python3-vcf -type d -name test | head -n 1` debian/python-pyvcf-examples/usr/share/doc/python3-vcf
find debian/python3-vcf -type d -name test | xargs rm -rf
find debian/python-pyvcf-examples/usr/share/doc/python3-vcf -name "__pycache__" | xargs rm -rf
mkdir -p debian/pyvcf/usr
mv debian/python3-vcf/usr/bin debian/pyvcf/usr
# strip .py extension
for py in debian/pyvcf/usr/bin/*.py ; do \
mv ${py} debian/pyvcf/usr/bin/`basename ${py} .py` ; \
done
make[1]: Leaving directory '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
debian/rules override_dh_python3
make[1]: Entering directory '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c'
dh_python3 --verbose
D: dh_python3 dh_python3:161: version: 4.20201102+nmu1
D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '--verbose']
D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': True, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': None}
D: dh_python3 dh_python3:164: args: []
D: dh_python3 dh_python3:165: supported Python versions: 3.9 (default=3.9)
D: dh_python3 debhelper:107: skipping package: python-pyvcf-examples
D: dh_python3 debhelper:152: source=python-pyvcf, binary packages=['python3-vcf', 'pyvcf']
D: dh_python3 dh_python3:183: processing package python3-vcf...
D: dh_python3 fs:49: moving files from debian/python3-vcf/usr/lib/python3.9/dist-packages to debian/python3-vcf/usr/lib/python3/dist-packages/
D: dh_python3 fs:260: package python3-vcf details = {'requires.txt': {'debian/python3-vcf/usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.9')}, 'ext_no_version': set()}
D: dh_python3 depends:117: generating dependencies for package python3-vcf
D: dh_python3 pydist:142: trying to find dependency for setuptools (python=None)
D: dh_python3 depends:275: D={'python3 (<< 3.10)', 'python3 (>= 3.9~)', 'python3:any', 'python3-pkg-resources'}; R=[]; S=[]; E=[], B=[]; RT=[]
D: dh_python3 dh_python3:183: processing package pyvcf...
D: dh_python3 fs:260: package pyvcf details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3, /usr/bin/python3}, 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()}
D: dh_python3 depends:117: generating dependencies for package pyvcf
D: dh_python3 depends:275: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[]
make[1]: Leaving directory '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c'
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package python3-vcf: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-vcf: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-vcf: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-vcf: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-vcf' in '../python3-vcf_0.6.8+git20170215.476169c-8_armhf.deb'.
dpkg-deb: building package 'python3-vcf-dbgsym' in '../python3-vcf-dbgsym_0.6.8+git20170215.476169c-8_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../python-pyvcf_0.6.8+git20170215.476169c-8_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-10-17T06:35:28Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-pyvcf_0.6.8+git20170215.476169c-8_armhf.changes:
-------------------------------------------------------
Format: 1.8
Date: Fri, 15 Oct 2021 12:51:04 +0530
Source: python-pyvcf
Binary: python3-vcf python3-vcf-dbgsym
Architecture: armhf
Version: 0.6.8+git20170215.476169c-8
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
python3-vcf - Variant Call Format (VCF) parser for Python 3
Changes:
python-pyvcf (0.6.8+git20170215.476169c-8) unstable; urgency=medium
.
* Team Upload.
* d/patches:
- fix-setuptools.patch: Fix FTBFS with new setuptools
- 2to3.patch: Change python2 syntax to python3
* d/control:
- Change homepage to github
- Bump debhelper compatibility level to 13
- Bump Standards-Version to 4.6.0 (no changes needed)
- Add "Rules-Requires-Root: no"
Checksums-Sha1:
1b17319aaf694d28e57bc1367bcb206204afb39e 7061 python-pyvcf_0.6.8+git20170215.476169c-8_armhf.buildinfo
75a3543113b23c05defb37947d3296c82bb45f60 74088 python3-vcf-dbgsym_0.6.8+git20170215.476169c-8_armhf.deb
89ca36736eaf632913c602eb590cb3d58ae4f212 39656 python3-vcf_0.6.8+git20170215.476169c-8_armhf.deb
Checksums-Sha256:
917a8a776a75b83d367c472e8910a930edaa0d7ab1ebdf3abe65ed67e8e3cc66 7061 python-pyvcf_0.6.8+git20170215.476169c-8_armhf.buildinfo
a50eec182c073915ec3491e8bcd15b048462f01e10331b443dcbd336589d802e 74088 python3-vcf-dbgsym_0.6.8+git20170215.476169c-8_armhf.deb
90fe6f35103b5c96bbe2d3c4d9eb97d9fec63474de47c69e587bda6cbea9f444 39656 python3-vcf_0.6.8+git20170215.476169c-8_armhf.deb
Files:
39af269a7d8c60770d34a0451775ff34 7061 python optional python-pyvcf_0.6.8+git20170215.476169c-8_armhf.buildinfo
6530c6d117289a03dd9cfdd9f5786f8b 74088 debug optional python3-vcf-dbgsym_0.6.8+git20170215.476169c-8_armhf.deb
439b853c05af142fb2c5206e1cf67df5 39656 python optional python3-vcf_0.6.8+git20170215.476169c-8_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-vcf-dbgsym_0.6.8+git20170215.476169c-8_armhf.deb
--------------------------------------------------------
new Debian package, version 2.0.
size 74088 bytes: control archive=556 bytes.
426 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: python3-vcf-dbgsym
Source: python-pyvcf
Version: 0.6.8+git20170215.476169c-8
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 91
Depends: python3-vcf (= 0.6.8+git20170215.476169c-8)
Section: debug
Priority: optional
Description: debug symbols for python3-vcf
Build-Ids: 5d991e58266925aa080e2a774d9be5e78e9489af
drwxr-xr-x root/root 0 2021-10-15 07:21 ./
drwxr-xr-x root/root 0 2021-10-15 07:21 ./usr/
drwxr-xr-x root/root 0 2021-10-15 07:21 ./usr/lib/
drwxr-xr-x root/root 0 2021-10-15 07:21 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-10-15 07:21 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-10-15 07:21 ./usr/lib/debug/.build-id/5d/
-rw-r--r-- root/root 82724 2021-10-15 07:21 ./usr/lib/debug/.build-id/5d/991e58266925aa080e2a774d9be5e78e9489af.debug
drwxr-xr-x root/root 0 2021-10-15 07:21 ./usr/share/
drwxr-xr-x root/root 0 2021-10-15 07:21 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-10-15 07:21 ./usr/share/doc/python3-vcf-dbgsym -> python3-vcf
python3-vcf_0.6.8+git20170215.476169c-8_armhf.deb
-------------------------------------------------
new Debian package, version 2.0.
size 39656 bytes: control archive=1864 bytes.
1318 bytes, 29 lines control
1386 bytes, 16 lines md5sums
247 bytes, 12 lines * postinst #!/bin/sh
396 bytes, 12 lines * prerm #!/bin/sh
Package: python3-vcf
Source: python-pyvcf
Version: 0.6.8+git20170215.476169c-8
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 139
Depends: libc6 (>= 2.4), python3 (<< 3.10), python3 (>= 3.9~), python3-pkg-resources, python3:any, python3-pysam
Breaks: python3-pyvcf
Replaces: python3-pyvcf
Provides: python3-pyvcf
Section: python
Priority: optional
Homepage: https://github.com/jamescasbon/PyVCF
Description: Variant Call Format (VCF) parser for Python 3
The Variant Call Format (VCF) specifies the format of a text file used
in bioinformatics for storing gene sequence variations. The format has
been developed with the advent of large-scale genotyping and DNA
sequencing projects, such as the 1000 Genomes Project.
.
The intent of this module is to mimic the ``csv`` module in the Python
stdlib, as opposed to more flexible serialization formats like JSON or
YAML. ``vcf`` will attempt to parse the content of each record based on
the data types specified in the meta-information lines -- specifically
the ##INFO and
##FORMAT lines. If these lines are missing or incomplete, it will check
against the reserved types mentioned in the spec. Failing that, it will
just return strings.
.
This package provides the Python 3 modules.
drwxr-xr-x root/root 0 2021-10-15 07:21 ./
drwxr-xr-x root/root 0 2021-10-15 07:21 ./usr/
drwxr-xr-x root/root 0 2021-10-15 07:21 ./usr/lib/
drwxr-xr-x root/root 0 2021-10-15 07:21 ./usr/lib/python3/
drwxr-xr-x root/root 0 2021-10-15 07:21 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2021-10-15 07:21 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/
-rw-r--r-- root/root 1086 2021-10-15 07:21 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2021-10-15 07:21 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/dependency_links.txt
-rw-r--r-- root/root 232 2021-10-15 07:21 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/entry_points.txt
-rw-r--r-- root/root 0 2021-10-15 07:21 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/requires.txt
-rw-r--r-- root/root 4 2021-10-15 07:21 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/top_level.txt
drwxr-xr-x root/root 0 2021-10-15 07:21 ./usr/lib/python3/dist-packages/vcf/
-rw-r--r-- root/root 384 2017-02-15 13:48 ./usr/lib/python3/dist-packages/vcf/__init__.py
-rw-r--r-- root/root 43624 2021-10-15 07:21 ./usr/lib/python3/dist-packages/vcf/cparse.cpython-39-arm-linux-gnueabihf.so
-rw-r--r-- root/root 2821 2017-02-15 13:48 ./usr/lib/python3/dist-packages/vcf/cparse.pyx
-rw-r--r-- root/root 6240 2017-02-15 13:48 ./usr/lib/python3/dist-packages/vcf/filters.py
-rw-r--r-- root/root 24390 2021-10-15 07:21 ./usr/lib/python3/dist-packages/vcf/model.py
-rw-r--r-- root/root 28057 2021-10-15 07:21 ./usr/lib/python3/dist-packages/vcf/parser.py
-rw-r--r-- root/root 4023 2021-10-15 07:21 ./usr/lib/python3/dist-packages/vcf/sample_filter.py
-rw-r--r-- root/root 3278 2021-10-15 07:21 ./usr/lib/python3/dist-packages/vcf/utils.py
drwxr-xr-x root/root 0 2021-10-15 07:21 ./usr/share/
drwxr-xr-x root/root 0 2021-10-15 07:21 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-10-15 07:21 ./usr/share/doc/python3-vcf/
-rw-r--r-- root/root 1143 2021-10-15 07:21 ./usr/share/doc/python3-vcf/changelog.Debian.gz
-rw-r--r-- root/root 2326 2017-02-15 13:48 ./usr/share/doc/python3-vcf/changelog.gz
-rw-r--r-- root/root 1904 2021-10-15 06:51 ./usr/share/doc/python3-vcf/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 5952
Build-Time: 130
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 611
Job: python-pyvcf_0.6.8+git20170215.476169c-8
Machine Architecture: armhf
Package: python-pyvcf
Package-Time: 790
Source-Version: 0.6.8+git20170215.476169c-8
Space: 5952
Status: successful
Version: 0.6.8+git20170215.476169c-8
--------------------------------------------------------------------------------
Finished at 2021-10-17T06:35:28Z
Build needed 00:13:10, 5952k disc space