python-pyvcf →
0.6.8+git20170215.476169c-5 →
armhf → 2020-01-12 17:42:50
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
Negative repeat count does nothing at /usr/share/perl5/Sbuild/Build.pm line 2740.
+==============================================================================+
Negative repeat count does nothing at /usr/share/perl5/Sbuild/Base.pm line 124.
| python-pyvcf 0.6.8+git20170215.476169c-5 (armhf) Sun, 12 Jan 2020 17:24:11 +0000 |
+==============================================================================+
Package: python-pyvcf
Version: 0.6.8+git20170215.476169c-5
Source Version: 0.6.8+git20170215.476169c-5
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-ea73e540-1f90-40e3-8d04-d4bc69cbc6b5' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.7 MB]
Fetched 24.3 MB in 26s (920 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-pyvcf' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-pyvcf.git
Please use:
git clone https://salsa.debian.org/med-team/python-pyvcf.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 943 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main python-pyvcf 0.6.8+git20170215.476169c-5 (dsc) [2396 B]
Get:2 http://172.17.0.1/private bullseye-staging/main python-pyvcf 0.6.8+git20170215.476169c-5 (tar) [936 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main python-pyvcf 0.6.8+git20170215.476169c-5 (diff) [5200 B]
Fetched 943 kB in 0s (7934 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-pyvcf-HwuCSs/python-pyvcf-0.6.8+git20170215.476169c' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-pyvcf-HwuCSs' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-PjNkxR/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-PjNkxR/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-PjNkxR/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-PjNkxR/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-PjNkxR/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-PjNkxR/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-PjNkxR/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-PjNkxR/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-PjNkxR/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2830 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-PjNkxR/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-PjNkxR/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 16 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-PjNkxR/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12242 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-python, cython3, python3-all-dev, python3-setuptools, python3-pytest, python3-pysam
Filtered Build-Depends: debhelper-compat (= 12), dh-python, cython3, python3-all-dev, python3-setuptools, python3-pytest, python3-pysam
dpkg-deb: building package 'sbuild-build-depends-python-pyvcf-dummy' in '/<<BUILDDIR>>/resolver-PjNkxR/apt_archive/sbuild-build-depends-python-pyvcf-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-pyvcf-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-PjNkxR/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-PjNkxR/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-PjNkxR/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-PjNkxR/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-PjNkxR/apt_archive ./ Sources [545 B]
Get:5 copy:/<<BUILDDIR>>/resolver-PjNkxR/apt_archive ./ Packages [610 B]
Fetched 2488 B in 1s (3221 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-PjNkxR/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-PjNkxR/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install python-pyvcf build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1
libbsd0 libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1
libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0
libgssapi-krb5-2 libhts3 libicu63 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpipeline1
libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7
libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libpython3.8
libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib librtmp1
libsigsegv2 libssh2-1 libssl1.1 libsub-override-perl libtinfo5 libtool
libuchardet0 libxml2 m4 man-db mime-support po-debconf python3 python3-all
python3-all-dev python3-atomicwrites python3-attr python3-dev
python3-distutils python3-importlib-metadata python3-lib2to3 python3-minimal
python3-more-itertools python3-packaging python3-pkg-resources
python3-pluggy python3-py python3-pyparsing python3-pysam python3-pytest
python3-setuptools python3-six python3-wcwidth python3-zipp python3.7
python3.7-dev python3.7-minimal python3.8 python3.8-dev python3.8-minimal
sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev
groff krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk
m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk
python3-venv python-attr-doc subversion python-pyparsing-doc
python-setuptools-doc python3.7-venv python3.7-doc binfmt-support
python3.8-venv python3.8-doc
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales publicsuffix libltdl-dev
libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1
libbsd0 libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1
libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0
libgssapi-krb5-2 libhts3 libicu63 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpipeline1
libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7
libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libpython3.8
libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib librtmp1
libsigsegv2 libssh2-1 libssl1.1 libsub-override-perl libtinfo5 libtool
libuchardet0 libxml2 m4 man-db mime-support po-debconf python3 python3-all
python3-all-dev python3-atomicwrites python3-attr python3-dev
python3-distutils python3-importlib-metadata python3-lib2to3 python3-minimal
python3-more-itertools python3-packaging python3-pkg-resources
python3-pluggy python3-py python3-pyparsing python3-pysam python3-pytest
python3-setuptools python3-six python3-wcwidth python3-zipp python3.7
python3.7-dev python3.7-minimal python3.8 python3.8-dev python3.8-minimal
sbuild-build-depends-python-pyvcf-dummy sensible-utils zlib1g-dev
0 upgraded, 96 newly installed, 0 to remove and 16 not upgraded.
Need to get 126 MB of archives.
After this operation, 285 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-PjNkxR/apt_archive ./ sbuild-build-depends-python-pyvcf-dummy 0.invalid.0 [896 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-2 [1261 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.6-1 [585 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.6-1 [1527 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.7.5-3 [36.8 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.6-1 [1669 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.6-1 [350 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.7.5-3 [20.2 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.7.5-3 [62.1 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.1-2 [742 kB]
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Get:22 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-3 [262 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-3 [112 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-3 [66.8 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.14-0.1 [1375 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.7.3 [174 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-1 [23.6 kB]
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Get:43 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.4-1 [1138 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
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Get:47 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
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Get:51 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.0-1 [78.3 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.0-1 [145 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20191017 [94.4 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6 [261 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6-6 [14.0 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1 [73.9 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
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Get:66 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libhts3 armhf 1.10.2-2 [327 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7 armhf 3.7.6-1 [1253 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-dev armhf 3.7.6-1 [40.2 MB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.7.5-3 [20.3 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.1-2 [1597 kB]
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Get:73 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-dev armhf 3.8.1-2 [46.0 MB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.7.5-3 [1072 B]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.1-2 [406 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.7.5-3 [1060 B]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf python3.7-dev armhf 3.7.6-1 [518 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.7.5-3 [1260 B]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf python3.8-dev armhf 3.8.1-2 [519 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.7.5-3 [1076 B]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf python3-atomicwrites all 1.1.5-2 [6892 B]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf python3-attr all 18.2.0-1 [37.3 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.13.0-1 [16.2 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf python3-more-itertools all 4.2.0-1 [42.2 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf python3-zipp all 0.6.0-1 [5856 B]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf python3-importlib-metadata all 0.23-2 [9356 B]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf python3-pyparsing all 2.4.2-1 [106 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf python3-packaging all 19.1-2 [23.9 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 44.0.0-1 [155 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf python3-pluggy all 0.13.0-2 [21.9 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf python3-py all 1.8.0-1 [86.5 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf python3-pysam armhf 0.15.3+ds-5 [2358 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf python3-wcwidth all 0.1.7+dfsg1-6 [15.5 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf python3-pytest all 4.6.7-1 [266 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 44.0.0-1 [313 kB]
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Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up python3.7 (3.7.6-1) ...
Setting up gettext (0.19.8.1-10) ...
Setting up libpython3-dev:armhf (3.7.5-3) ...
Setting up libcurl3-gnutls:armhf (7.67.0-2) ...
Setting up python3 (3.7.5-3) ...
Setting up man-db (2.9.0-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3.7-dev (3.7.6-1) ...
Setting up python3-atomicwrites (1.1.5-2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up python3-six (1.13.0-1) ...
Setting up python3-wcwidth (0.1.7+dfsg1-6) ...
Setting up python3-pyparsing (2.4.2-1) ...
Setting up libpython3.8-dev:armhf (3.8.1-2) ...
Setting up libpython3-all-dev:armhf (3.7.5-3) ...
Setting up cython3 (0.29.14-0.1) ...
Setting up python3.8-dev (3.8.1-2) ...
Setting up python3-lib2to3 (3.8.0-1) ...
Setting up python3-pkg-resources (44.0.0-1) ...
Setting up python3-distutils (3.8.0-1) ...
Setting up dh-python (4.20191017) ...
Setting up python3-more-itertools (4.2.0-1) ...
Setting up python3-attr (18.2.0-1) ...
Setting up libhts3:armhf (1.10.2-2) ...
Setting up python3-pysam (0.15.3+ds-5) ...
Setting up python3-setuptools (44.0.0-1) ...
Setting up python3-py (1.8.0-1) ...
Setting up po-debconf (1.0.21) ...
Setting up python3-all (3.7.5-3) ...
Setting up python3-zipp (0.6.0-1) ...
Setting up python3-packaging (19.1-2) ...
Setting up python3-dev (3.7.5-3) ...
Setting up python3-all-dev (3.7.5-3) ...
Setting up python3-importlib-metadata (0.23-2) ...
Setting up python3-pluggy (0.13.0-2) ...
Setting up python3-pytest (4.6.7-1) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.7.3) ...
Setting up sbuild-build-depends-python-pyvcf-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-7+rpi1) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.33.1-6+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-22+rpi1 gcc-9_9.2.1-22+rpi1 libc6-dev_2.29-7+rpi1 libstdc++-9-dev_9.2.1-22+rpi1 libstdc++6_9.2.1-22+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-5 binutils_2.33.1-6+rpi1 binutils-arm-linux-gnueabihf_2.33.1-6+rpi1 binutils-common_2.33.1-6+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-22+rpi1 cython3_0.29.14-0.1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.3 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20191017 dh-strip-nondeterminism_1.6.3-1 diffutils_1:3.7-3 dirmngr_2.2.17-3+b1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-3 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-22+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-9_9.2.1-22+rpi1 gcc-9-base_9.2.1-22+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.17-3 gnupg-l10n_2.2.17-3 gnupg-utils_2.2.17-3+b1 gpg_2.2.17-3+b1 gpg-agent_2.2.17-3+b1 gpg-wks-client_2.2.17-3+b1 gpg-wks-server_2.2.17-3+b1 gpgconf_2.2.17-3+b1 gpgsm_2.2.17-3+b1 gpgv_2.2.17-3+b1 grep_3.3-1 groff-base_1.22.4-4 gzip_1.9-3 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-2 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-22+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-22+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.33.1-6+rpi1 libblkid1_2.34-0.1 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-7+rpi1 libc-dev-bin_2.29-7+rpi1 libc6_2.29-7+rpi1 libc6-dev_2.29-7+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcap2-bin_1:2.27-1 libcc1-0_9.2.1-22+rpi1 libcom-err2_1.45.4-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10+b5 libcrypt1_1:4.4.10-10+b5 libcurl3-gnutls_7.67.0-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.7.3 libdeflate0_1.5-1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.3-1 libgcc-9-dev_9.2.1-22+rpi1 libgcc1_1:9.2.1-22+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.4-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-22+rpi1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6+b1 libhogweed5_3.5.1+really3.5.1-2 libhts3_1.10.2-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl22_0.22-2 libk5crypto3_1.17-6+b1 libkeyutils1_1.6-6 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 libldap-2.4-2_2.4.48+dfsg-1+b2 libldap-common_2.4.48+dfsg-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-3 libmagic1_1:5.38-3 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2 libpam-cap_1:2.27-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpsl5_0.20.2-2 libpython3-all-dev_3.7.5-3 libpython3-dev_3.7.5-3 libpython3-stdlib_3.7.5-3 libpython3.7_3.7.6-1 libpython3.7-dev_3.7.6-1 libpython3.7-minimal_3.7.6-1 libpython3.7-stdlib_3.7.6-1 libpython3.8_3.8.1-2 libpython3.8-dev_3.8.1-2 libpython3.8-minimal_3.8.1-2 libpython3.8-stdlib_3.8.1-2 libreadline7_7.0-5 libreadline8_8.0-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 librust-rand-core-dev_0.5.1-1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2+rpi1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.30.1+fossil191229-1 libss2_1.45.4-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.2.1-22+rpi1 libstdc++6_9.2.1-22+rpi1 libsub-override-perl_0.09-2 libsystemd0_244-3+rpi1+b1 libtasn1-6_4.15.0-2 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libubsan1_9.2.1-22+rpi1 libuchardet0_0.0.6-3 libudev1_244-3+rpi1+b1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml2_2.9.4+dfsg1-8 libzstd1_1.4.4+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8-1 logsave_1.45.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17 mime-support_3.64 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_6.0 passwd_1:4.8-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 po-debconf_1.0.21 python3_3.7.5-3 python3-all_3.7.5-3 python3-all-dev_3.7.5-3 python3-atomicwrites_1.1.5-2 python3-attr_18.2.0-1 python3-dev_3.7.5-3 python3-distutils_3.8.0-1 python3-importlib-metadata_0.23-2 python3-lib2to3_3.8.0-1 python3-minimal_3.7.5-3 python3-more-itertools_4.2.0-1 python3-packaging_19.1-2 python3-pkg-resources_44.0.0-1 python3-pluggy_0.13.0-2 python3-py_1.8.0-1 python3-pyparsing_2.4.2-1 python3-pysam_0.15.3+ds-5 python3-pytest_4.6.7-1 python3-setuptools_44.0.0-1 python3-six_1.13.0-1 python3-wcwidth_0.1.7+dfsg1-6 python3-zipp_0.6.0-1 python3.7_3.7.6-1 python3.7-dev_3.7.6-1 python3.7-minimal_3.7.6-1 python3.8_3.8.1-2 python3.8-dev_3.8.1-2 python3.8-minimal_3.8.1-2 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-pyvcf-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-1 tar_1.30+dfsg-6 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Dec 9 12:01:18 2019 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-pyvcf_0.6.8+git20170215.476169c-5.dsc
dpkg-source: info: extracting python-pyvcf in /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c
dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz
dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c-5.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-ea73e540-1f90-40e3-8d04-d4bc69cbc6b5
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-pyvcf
dpkg-buildpackage: info: source version 0.6.8+git20170215.476169c-5
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:217: python3.8 setup.py clean
running clean
removing '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.8' does not exist -- can't clean it
I: pybuild base:217: python3.7 setup.py clean
running clean
removing '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.8 setup.py config
running config
I: pybuild base:217: python3.7 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3.8 setup.py build
running build
running build_py
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf
copying vcf/__init__.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf
copying vcf/filters.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf
copying vcf/model.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf
copying vcf/parser.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf
copying vcf/sample_filter.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf
copying vcf/utils.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/__init__.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/prof.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/test_vcf.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
running egg_info
creating PyVCF.egg-info
writing PyVCF.egg-info/PKG-INFO
writing dependency_links to PyVCF.egg-info/dependency_links.txt
writing entry points to PyVCF.egg-info/entry_points.txt
writing requirements to PyVCF.egg-info/requires.txt
writing top-level names to PyVCF.egg-info/top_level.txt
writing manifest file 'PyVCF.egg-info/SOURCES.txt'
reading manifest file 'PyVCF.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'PyVCF.egg-info/SOURCES.txt'
copying vcf/cparse.pyx -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf
copying vcf/test/1kg.sites.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/FT.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/bad-info-character.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/bcftools.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/contig_idonly.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/example-4.0.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/example-4.1-bnd.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/example-4.1-info-multiple-values.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/example-4.1-ploidy.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/example-4.1-sv.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/example-4.1.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/example-4.2.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/freebayes.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/gatk.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/gatk_26_meta.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/gonl.chr20.release4.gtc.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/info-type-character.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/issue-140-file1.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/issue-140-file2.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/issue-140-file3.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/issue-16.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/issue-214.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/issue-254.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/issue_49.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/metadata-whitespace.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/mixed-filtering.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/null_genotype_mono.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/parse-meta-line.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/samples-space.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/samtools.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/strelka.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/string_as_flag.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/uncalled_genotypes.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/walk_left.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/walk_refcall.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/1kg.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/issue-201.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/tb.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/issue-201.vcf.gz.tbi -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
copying vcf/test/tb.vcf.gz.tbi -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test
Fixing /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/__init__.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/filters.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/model.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/parser.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/sample_filter.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/utils.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/__init__.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/prof.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/test_vcf.py
Skipping optional fixer: buffer
Skipping optional fixer: idioms
Skipping optional fixer: set_literal
Skipping optional fixer: ws_comma
Fixing /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/__init__.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/filters.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/model.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/parser.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/sample_filter.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/utils.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/__init__.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/prof.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/test_vcf.py
Skipping optional fixer: buffer
Skipping optional fixer: idioms
Skipping optional fixer: set_literal
Skipping optional fixer: ws_comma
running build_ext
cythoning vcf/cparse.pyx to vcf/cparse.c
building 'vcf.cparse' extension
creating build
creating build/temp.linux-armhf-3.8
creating build/temp.linux-armhf-3.8/vcf
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c vcf/cparse.c -o build/temp.linux-armhf-3.8/vcf/cparse.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/vcf/cparse.o -o /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/cparse.cpython-38-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.8
copying and adjusting scripts/vcf_melt -> build/scripts-3.8
copying and adjusting scripts/vcf_filter.py -> build/scripts-3.8
copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-3.8
changing mode of build/scripts-3.8/vcf_melt from 664 to 775
changing mode of build/scripts-3.8/vcf_filter.py from 664 to 775
changing mode of build/scripts-3.8/vcf_sample_filter.py from 664 to 775
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/vcf/cparse.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
warning: vcf/cparse.pyx:29:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
warning: vcf/cparse.pyx:29:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
warning: vcf/cparse.pyx:29:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
warning: vcf/cparse.pyx:29:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
I: pybuild base:217: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf
copying vcf/__init__.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf
copying vcf/filters.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf
copying vcf/model.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf
copying vcf/parser.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf
copying vcf/sample_filter.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf
copying vcf/utils.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/__init__.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/prof.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/test_vcf.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
running egg_info
writing PyVCF.egg-info/PKG-INFO
writing dependency_links to PyVCF.egg-info/dependency_links.txt
writing entry points to PyVCF.egg-info/entry_points.txt
writing requirements to PyVCF.egg-info/requires.txt
writing top-level names to PyVCF.egg-info/top_level.txt
reading manifest file 'PyVCF.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'PyVCF.egg-info/SOURCES.txt'
copying vcf/cparse.pyx -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf
copying vcf/test/1kg.sites.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/FT.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/bad-info-character.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/bcftools.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/contig_idonly.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/example-4.0.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/example-4.1-bnd.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/example-4.1-info-multiple-values.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/example-4.1-ploidy.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/example-4.1-sv.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/example-4.1.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/example-4.2.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/freebayes.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/gatk.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/gatk_26_meta.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/gonl.chr20.release4.gtc.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/info-type-character.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/issue-140-file1.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/issue-140-file2.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/issue-140-file3.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/issue-16.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/issue-214.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/issue-254.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/issue_49.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/metadata-whitespace.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/mixed-filtering.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/null_genotype_mono.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/parse-meta-line.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/samples-space.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/samtools.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/strelka.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/string_as_flag.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/uncalled_genotypes.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/walk_left.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/walk_refcall.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/1kg.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/issue-201.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/tb.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/issue-201.vcf.gz.tbi -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
copying vcf/test/tb.vcf.gz.tbi -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test
Fixing /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/__init__.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/filters.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/model.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/parser.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/sample_filter.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/utils.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/__init__.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/prof.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/test_vcf.py
Skipping optional fixer: buffer
Skipping optional fixer: idioms
Skipping optional fixer: set_literal
Skipping optional fixer: ws_comma
Fixing /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/__init__.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/filters.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/model.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/parser.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/sample_filter.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/utils.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/__init__.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/prof.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/test_vcf.py
Skipping optional fixer: buffer
Skipping optional fixer: idioms
Skipping optional fixer: set_literal
Skipping optional fixer: ws_comma
running build_ext
skipping 'vcf/cparse.c' Cython extension (up-to-date)
building 'vcf.cparse' extension
creating build/temp.linux-armhf-3.7
creating build/temp.linux-armhf-3.7/vcf
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c vcf/cparse.c -o build/temp.linux-armhf-3.7/vcf/cparse.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/vcf/cparse.o -o /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/cparse.cpython-37m-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.7
copying and adjusting scripts/vcf_melt -> build/scripts-3.7
copying and adjusting scripts/vcf_filter.py -> build/scripts-3.7
copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-3.7
changing mode of build/scripts-3.7/vcf_melt from 664 to 775
changing mode of build/scripts-3.7/vcf_filter.py from 664 to 775
changing mode of build/scripts-3.7/vcf_sample_filter.py from 664 to 775
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:217: cd /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build; python3.8 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.8.1, pytest-4.6.7, py-1.8.0, pluggy-0.13.0
rootdir: /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c
collected 104 items
vcf/test/test_vcf.py ................................................... [ 49%]
........................................ss.ss........ [100%]
=============================== warnings summary ===============================
vcf/parser.py:278
/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/parser.py:278: DeprecationWarning: invalid escape sequence \[
self._alt_pattern = re.compile('[\[\]]')
vcf/parser.py:536
/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/parser.py:536: DeprecationWarning: invalid escape sequence \[
remoteOrientation = (re.search('\[', str) is not None)
-- Docs: https://docs.pytest.org/en/latest/warnings.html
============== 100 passed, 4 skipped, 2 warnings in 42.82 seconds ==============
I: pybuild base:217: cd /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build; python3.7 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.7.6, pytest-4.6.7, py-1.8.0, pluggy-0.13.0
rootdir: /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c
collected 104 items
vcf/test/test_vcf.py ................................................... [ 49%]
........................................ss.ss........ [100%]
=============================== warnings summary ===============================
vcf/parser.py:278
/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/parser.py:278: DeprecationWarning: invalid escape sequence \[
self._alt_pattern = re.compile('[\[\]]')
vcf/parser.py:536
/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/parser.py:536: DeprecationWarning: invalid escape sequence \[
remoteOrientation = (re.search('\[', str) is not None)
-- Docs: https://docs.pytest.org/en/latest/warnings.html
============== 100 passed, 4 skipped, 2 warnings in 46.60 seconds ==============
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3.8 setup.py install --root /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf
running install
running build
running build_py
running egg_info
writing PyVCF.egg-info/PKG-INFO
writing dependency_links to PyVCF.egg-info/dependency_links.txt
writing entry points to PyVCF.egg-info/entry_points.txt
writing requirements to PyVCF.egg-info/requires.txt
writing top-level names to PyVCF.egg-info/top_level.txt
reading manifest file 'PyVCF.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'PyVCF.egg-info/SOURCES.txt'
running build_ext
skipping 'vcf/cparse.c' Cython extension (up-to-date)
running build_scripts
running install_lib
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/__init__.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/filters.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/model.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/parser.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/sample_filter.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/utils.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/__init__.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/prof.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/test_vcf.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/1kg.sites.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/FT.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/bad-info-character.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/bcftools.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/contig_idonly.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/example-4.0.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/example-4.1-bnd.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/example-4.1-info-multiple-values.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/example-4.1-ploidy.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/example-4.1-sv.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/example-4.1.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/example-4.2.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/freebayes.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/gatk.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/gatk_26_meta.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/info-type-character.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/issue-140-file1.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/issue-140-file2.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/issue-140-file3.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/issue-16.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/issue-214.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/issue-254.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/issue_49.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/metadata-whitespace.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/mixed-filtering.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/null_genotype_mono.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/parse-meta-line.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/samples-space.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/samtools.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/strelka.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/string_as_flag.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/uncalled_genotypes.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/walk_left.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/walk_refcall.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/1kg.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/issue-201.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/tb.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/issue-201.vcf.gz.tbi -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/tb.vcf.gz.tbi -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/__pycache__/__init__.cpython-38.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/test/__pycache__/test_vcf.cpython-38-PYTEST.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/cparse.pyx -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/cparse.cpython-38-arm-linux-gnueabihf.so -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/__pycache__/__init__.cpython-38.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/__pycache__/parser.cpython-38.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/__pycache__/model.cpython-38.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/__pycache__/filters.cpython-38.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/__pycache__/sample_filter.cpython-38.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.8_vcf/build/vcf/__pycache__/utils.cpython-38.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/__pycache__
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/filters.py to filters.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/model.py to model.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/parser.py to parser.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/sample_filter.py to sample_filter.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/utils.py to utils.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test/prof.py to prof.cpython-38.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/vcf/test/test_vcf.py to test_vcf.cpython-38.pyc
running install_egg_info
Copying PyVCF.egg-info to /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.8/dist-packages/PyVCF-0.6.8.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin
copying build/scripts-3.8/vcf_melt -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin
copying build/scripts-3.8/vcf_filter.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin
copying build/scripts-3.8/vcf_sample_filter.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin
changing mode of /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_melt to 775
changing mode of /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_filter.py to 775
changing mode of /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_sample_filter.py to 775
I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf
running install
running build
running build_py
running egg_info
writing PyVCF.egg-info/PKG-INFO
writing dependency_links to PyVCF.egg-info/dependency_links.txt
writing entry points to PyVCF.egg-info/entry_points.txt
writing requirements to PyVCF.egg-info/requires.txt
writing top-level names to PyVCF.egg-info/top_level.txt
reading manifest file 'PyVCF.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'PyVCF.egg-info/SOURCES.txt'
running build_ext
skipping 'vcf/cparse.c' Cython extension (up-to-date)
running build_scripts
running install_lib
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/__init__.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/filters.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/model.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/parser.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/sample_filter.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/utils.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/__init__.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/prof.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/test_vcf.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/1kg.sites.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/FT.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/bad-info-character.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/bcftools.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/contig_idonly.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/example-4.0.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/example-4.1-bnd.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/example-4.1-info-multiple-values.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/example-4.1-ploidy.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/example-4.1-sv.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/example-4.1.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/example-4.2.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/freebayes.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/gatk.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/gatk_26_meta.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/info-type-character.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/issue-140-file1.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/issue-140-file2.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/issue-140-file3.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/issue-16.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/issue-214.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/issue-254.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/issue_49.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/metadata-whitespace.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/mixed-filtering.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/null_genotype_mono.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/parse-meta-line.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/samples-space.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/samtools.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/strelka.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/string_as_flag.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/uncalled_genotypes.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/walk_left.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/walk_refcall.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/1kg.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/issue-201.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/tb.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/issue-201.vcf.gz.tbi -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/tb.vcf.gz.tbi -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/__pycache__/__init__.cpython-37.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/test/__pycache__/test_vcf.cpython-37-PYTEST.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/cparse.pyx -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/cparse.cpython-37m-arm-linux-gnueabihf.so -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/__pycache__/__init__.cpython-37.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/__pycache__/parser.cpython-37.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/__pycache__/model.cpython-37.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/__pycache__/filters.cpython-37.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/__pycache__/sample_filter.cpython-37.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_vcf/build/vcf/__pycache__/utils.cpython-37.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/__pycache__
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/filters.py to filters.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/model.py to model.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/parser.py to parser.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/sample_filter.py to sample_filter.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/utils.py to utils.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test/prof.py to prof.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/vcf/test/test_vcf.py to test_vcf.cpython-37.pyc
running install_egg_info
Copying PyVCF.egg-info to /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.7/dist-packages/PyVCF-0.6.8.egg-info
Skipping SOURCES.txt
running install_scripts
copying build/scripts-3.7/vcf_melt -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin
copying build/scripts-3.7/vcf_filter.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin
copying build/scripts-3.7/vcf_sample_filter.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin
changing mode of /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_melt to 775
changing mode of /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_filter.py to 775
changing mode of /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_sample_filter.py to 775
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c'
dh_install
# move testdata to separate dir
mkdir -p debian/python-pyvcf-examples/usr/share/doc/python3-vcf
mv `find debian/python3-vcf -type d -name test | head -n 1` debian/python-pyvcf-examples/usr/share/doc/python3-vcf
find debian/python3-vcf -type d -name test | xargs rm -rf
find debian/python-pyvcf-examples/usr/share/doc/python3-vcf -name "__pycache__" | xargs rm -rf
mkdir -p debian/vcf/usr
mv debian/python3-vcf/usr/bin debian/vcf/usr
# strip .py extension
for py in debian/vcf/usr/bin/*.py ; do \
mv ${py} debian/vcf/usr/bin/`basename ${py} .py` ; \
done
make[1]: Leaving directory '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
debian/rules override_dh_python3
make[1]: Entering directory '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c'
dh_python3 --verbose
D: dh_python3 dh_python3:161: version: 4.20191017
D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '--verbose']
D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': True, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': None}
D: dh_python3 dh_python3:164: args: []
D: dh_python3 dh_python3:166: supported Python versions: 3.7,3.8 (default=3.7)
D: dh_python3 debhelper:107: skipping package: python-pyvcf-examples
D: dh_python3 debhelper:153: source=python-pyvcf, binary packages=['python3-vcf', 'pyvcf']
D: dh_python3 dh_python3:183: processing package python3-vcf...
D: dh_python3 fs:49: moving files from debian/python3-vcf/usr/lib/python3.7/dist-packages to debian/python3-vcf/usr/lib/python3/dist-packages/
D: dh_python3 tools:232: invoking: /usr/bin/python3.7 -c 'import sysconfig as s;print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))'
D: dh_python3 fs:49: moving files from debian/python3-vcf/usr/lib/python3.8/dist-packages to debian/python3-vcf/usr/lib/python3/dist-packages/
D: dh_python3 tools:232: invoking: /usr/bin/python3.8 -c 'import sysconfig as s;print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))'
D: dh_python3 fs:260: package python3-vcf details = {'requires.txt': {'debian/python3-vcf/usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.8'), Version('3.7')}, 'ext_no_version': set()}
D: dh_python3 depends:117: generating dependencies for package python3-vcf
D: dh_python3 pydist:138: trying to find dependency for setuptools (python=None)
D: dh_python3 depends:275: D={'python3 (<< 3.9)', 'python3-pkg-resources', 'python3:any', 'python3 (>= 3.7~)'}; R=[]; S=[]; E=[], B=[]; RT=[]
D: dh_python3 dh_python3:183: processing package pyvcf...
D: dh_python3 fs:260: package pyvcf details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()}
D: dh_python3 depends:117: generating dependencies for package pyvcf
D: dh_python3 depends:275: D=set(); R=[]; S=[]; E=[], B=[]; RT=[]
make[1]: Leaving directory '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c'
dh_installinit -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package python3-vcf: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-vcf: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-vcf: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-vcf: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-vcf-dbgsym' in '../python3-vcf-dbgsym_0.6.8+git20170215.476169c-5_armhf.deb'.
dpkg-deb: building package 'python3-vcf' in '../python3-vcf_0.6.8+git20170215.476169c-5_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../python-pyvcf_0.6.8+git20170215.476169c-5_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-01-12T17:42:40Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-pyvcf_0.6.8+git20170215.476169c-5_armhf.changes:
-------------------------------------------------------
Format: 1.8
Date: Mon, 09 Dec 2019 11:12:54 +0100
Source: python-pyvcf
Binary: python3-vcf python3-vcf-dbgsym
Architecture: armhf
Version: 0.6.8+git20170215.476169c-5
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
python3-vcf - Variant Call Format (VCF) parser for Python 3
Closes: 946427
Changes:
python-pyvcf (0.6.8+git20170215.476169c-5) unstable; urgency=medium
.
* Breaks+Replaces: python3-pyvcf
Closes: #946427
* Run Build-Time test
* Add autopkgtest
* Depends: python3-pysam
* Fix dependency for pyvcf package
Checksums-Sha1:
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aa84df2ded3dea63bb3822ec6e5b7fe7cbf25e83 165128 python3-vcf-dbgsym_0.6.8+git20170215.476169c-5_armhf.deb
6666bfbd26f1da5cc55183c1492f5d829b532d0a 55576 python3-vcf_0.6.8+git20170215.476169c-5_armhf.deb
Checksums-Sha256:
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e748c97f530f6ea0ebc1b0b95b7e114d5d9e55b3e59e06e81138115e5682e457 165128 python3-vcf-dbgsym_0.6.8+git20170215.476169c-5_armhf.deb
6c281ef632cd937946f64f78618b4ef0f9074dd9bca6a79df80a13805261082f 55576 python3-vcf_0.6.8+git20170215.476169c-5_armhf.deb
Files:
27df5b6c2947bdc7d24b6cacd7a2013d 6999 python optional python-pyvcf_0.6.8+git20170215.476169c-5_armhf.buildinfo
a0e001e8b5a814ebca0adc9c3b3df3d9 165128 debug optional python3-vcf-dbgsym_0.6.8+git20170215.476169c-5_armhf.deb
e5b00d646d6ac90c7ed262c9740f9b95 55576 python optional python3-vcf_0.6.8+git20170215.476169c-5_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-vcf-dbgsym_0.6.8+git20170215.476169c-5_armhf.deb
--------------------------------------------------------
new Debian package, version 2.0.
size 165128 bytes: control archive=656 bytes.
468 bytes, 12 lines control
303 bytes, 3 lines md5sums
Package: python3-vcf-dbgsym
Source: python-pyvcf
Version: 0.6.8+git20170215.476169c-5
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 197
Depends: python3-vcf (= 0.6.8+git20170215.476169c-5)
Section: debug
Priority: optional
Description: debug symbols for python3-vcf
Build-Ids: 13d06796e249dcb52beabdac776ee685db0b89f3 62327e891271879d3f65c8fc50411674696f1016
drwxr-xr-x root/root 0 2019-12-09 10:12 ./
drwxr-xr-x root/root 0 2019-12-09 10:12 ./usr/
drwxr-xr-x root/root 0 2019-12-09 10:12 ./usr/lib/
drwxr-xr-x root/root 0 2019-12-09 10:12 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-12-09 10:12 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-12-09 10:12 ./usr/lib/debug/.build-id/13/
-rw-r--r-- root/root 97604 2019-12-09 10:12 ./usr/lib/debug/.build-id/13/d06796e249dcb52beabdac776ee685db0b89f3.debug
drwxr-xr-x root/root 0 2019-12-09 10:12 ./usr/lib/debug/.build-id/62/
-rw-r--r-- root/root 81316 2019-12-09 10:12 ./usr/lib/debug/.build-id/62/327e891271879d3f65c8fc50411674696f1016.debug
drwxr-xr-x root/root 0 2019-12-09 10:12 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2019-12-09 10:12 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 7484 2019-12-09 10:12 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-vcf.debug
drwxr-xr-x root/root 0 2019-12-09 10:12 ./usr/share/
drwxr-xr-x root/root 0 2019-12-09 10:12 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-12-09 10:12 ./usr/share/doc/python3-vcf-dbgsym -> python3-vcf
python3-vcf_0.6.8+git20170215.476169c-5_armhf.deb
-------------------------------------------------
new Debian package, version 2.0.
size 55576 bytes: control archive=1872 bytes.
1315 bytes, 29 lines control
1496 bytes, 17 lines md5sums
248 bytes, 12 lines * postinst #!/bin/sh
397 bytes, 12 lines * prerm #!/bin/sh
Package: python3-vcf
Source: python-pyvcf
Version: 0.6.8+git20170215.476169c-5
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 205
Depends: libc6 (>= 2.4), python3 (<< 3.9), python3 (>= 3.7~), python3-pkg-resources, python3:any, python3-pysam
Breaks: python3-pyvcf
Replaces: python3-pyvcf
Provides: python3-pyvcf
Section: python
Priority: optional
Homepage: https://pypi.python.org/pypi/PyVCF
Description: Variant Call Format (VCF) parser for Python 3
The Variant Call Format (VCF) specifies the format of a text file used
in bioinformatics for storing gene sequence variations. The format has
been developed with the advent of large-scale genotyping and DNA
sequencing projects, such as the 1000 Genomes Project.
.
The intent of this module is to mimic the ``csv`` module in the Python
stdlib, as opposed to more flexible serialization formats like JSON or
YAML. ``vcf`` will attempt to parse the content of each record based on
the data types specified in the meta-information lines -- specifically
the ##INFO and
##FORMAT lines. If these lines are missing or incomplete, it will check
against the reserved types mentioned in the spec. Failing that, it will
just return strings.
.
This package provides the Python 3 modules.
drwxr-xr-x root/root 0 2019-12-09 10:12 ./
drwxr-xr-x root/root 0 2019-12-09 10:12 ./usr/
drwxr-xr-x root/root 0 2019-12-09 10:12 ./usr/lib/
drwxr-xr-x root/root 0 2019-12-09 10:12 ./usr/lib/python3/
drwxr-xr-x root/root 0 2019-12-09 10:12 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2019-12-09 10:12 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/
-rw-r--r-- root/root 1173 2019-12-09 10:12 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2019-12-09 10:12 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/dependency_links.txt
-rw-r--r-- root/root 232 2019-12-09 10:12 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/entry_points.txt
-rw-r--r-- root/root 0 2019-12-09 10:12 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/requires.txt
-rw-r--r-- root/root 4 2019-12-09 10:12 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/top_level.txt
drwxr-xr-x root/root 0 2019-12-09 10:12 ./usr/lib/python3/dist-packages/vcf/
-rw-r--r-- root/root 384 2017-02-15 13:48 ./usr/lib/python3/dist-packages/vcf/__init__.py
-rw-r--r-- root/root 56044 2019-12-09 10:12 ./usr/lib/python3/dist-packages/vcf/cparse.cpython-37m-arm-linux-gnueabihf.so
-rw-r--r-- root/root 56044 2019-12-09 10:12 ./usr/lib/python3/dist-packages/vcf/cparse.cpython-38-arm-linux-gnueabihf.so
-rw-r--r-- root/root 2821 2017-02-15 13:48 ./usr/lib/python3/dist-packages/vcf/cparse.pyx
-rw-r--r-- root/root 6240 2017-02-15 13:48 ./usr/lib/python3/dist-packages/vcf/filters.py
-rw-r--r-- root/root 24390 2019-12-09 10:12 ./usr/lib/python3/dist-packages/vcf/model.py
-rw-r--r-- root/root 28057 2019-12-09 10:12 ./usr/lib/python3/dist-packages/vcf/parser.py
-rw-r--r-- root/root 4023 2019-12-09 10:12 ./usr/lib/python3/dist-packages/vcf/sample_filter.py
-rw-r--r-- root/root 3278 2019-12-09 10:12 ./usr/lib/python3/dist-packages/vcf/utils.py
drwxr-xr-x root/root 0 2019-12-09 10:12 ./usr/share/
drwxr-xr-x root/root 0 2019-12-09 10:12 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-12-09 10:12 ./usr/share/doc/python3-vcf/
-rw-r--r-- root/root 805 2019-12-09 10:12 ./usr/share/doc/python3-vcf/changelog.Debian.gz
-rw-r--r-- root/root 2326 2017-02-15 13:48 ./usr/share/doc/python3-vcf/changelog.gz
-rw-r--r-- root/root 1904 2019-12-09 10:12 ./usr/share/doc/python3-vcf/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 8636
Build-Time: 241
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 817
Job: python-pyvcf_0.6.8+git20170215.476169c-5
Machine Architecture: armhf
Package: python-pyvcf
Package-Time: 1109
Source-Version: 0.6.8+git20170215.476169c-5
Space: 8636
Status: successful
Version: 0.6.8+git20170215.476169c-5
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Finished at 2020-01-12T17:42:40Z
Build needed 00:18:29, 8636k disc space