python-pyvcf →
0.6.8+git20170215.476169c-2 →
armhf → 2019-09-08 07:12:46
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard
+==============================================================================+
| python-pyvcf 0.6.8+git20170215.476169c-2 (armhf) Sun, 08 Sep 2019 06:59:41 +0000 |
+==============================================================================+
Package: python-pyvcf
Version: 0.6.8+git20170215.476169c-2
Source Version: 0.6.8+git20170215.476169c-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-38a9bcb9-d4f3-462c-bdd8-0c1cbb0d4c76' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.0 MB]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-pyvcf' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-pyvcf.git
Please use:
git clone https://salsa.debian.org/med-team/python-pyvcf.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 943 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main python-pyvcf 0.6.8+git20170215.476169c-2 (dsc) [2334 B]
Get:2 http://172.17.0.1/private bullseye-staging/main python-pyvcf 0.6.8+git20170215.476169c-2 (tar) [936 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main python-pyvcf 0.6.8+git20170215.476169c-2 (diff) [4652 B]
Fetched 943 kB in 0s (2254 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-pyvcf-bVkzZi/python-pyvcf-0.6.8+git20170215.476169c' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-pyvcf-bVkzZi' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-5cBXIc/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-5cBXIc/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-5cBXIc/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-5cBXIc/apt_archive ./ InRelease
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Get:3 copy:/<<BUILDDIR>>/resolver-5cBXIc/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-5cBXIc/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-5cBXIc/apt_archive ./ Packages [434 B]
Fetched 2110 B in 1s (2829 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 96 not upgraded.
Need to get 852 B of archives.
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Get:1 copy:/<<BUILDDIR>>/resolver-5cBXIc/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
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(Reading database ... 12050 files and directories currently installed.)
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Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-python, cython3, python3-all-dev, python3-setuptools
Filtered Build-Depends: debhelper-compat (= 12), dh-python, cython3, python3-all-dev, python3-setuptools
dpkg-deb: building package 'sbuild-build-depends-python-pyvcf-dummy' in '/<<BUILDDIR>>/resolver-5cBXIc/apt_archive/sbuild-build-depends-python-pyvcf-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-pyvcf-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-5cBXIc/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-5cBXIc/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-5cBXIc/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-5cBXIc/apt_archive ./ Sources [521 B]
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Reading package lists...
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Reading package lists...
Install python-pyvcf build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0
libcroco3 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libglib2.0-0 libicu63 libmagic-mgc libmagic1 libmpdec2 libncurses6
libncursesw6 libpipeline1 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.7 libpython3.7-dev libpython3.7-minimal
libpython3.7-stdlib libreadline8 libsigsegv2 libssl1.1 libsub-override-perl
libtinfo5 libtinfo6 libtool libuchardet0 libxml2 m4 man-db mime-support
po-debconf python3 python3-all python3-all-dev python3-dev python3-distutils
python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools
python3.7 python3.7-dev python3.7-minimal sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev
groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python3-doc python3-tk python3-venv
python-setuptools-doc python3.7-venv python3.7-doc binfmt-support
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0
libcroco3 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libglib2.0-0 libicu63 libmagic-mgc libmagic1 libmpdec2 libncurses6
libpipeline1 libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib
libreadline8 libsigsegv2 libssl1.1 libsub-override-perl libtinfo5 libtool
libuchardet0 libxml2 m4 man-db mime-support po-debconf python3 python3-all
python3-all-dev python3-dev python3-distutils python3-lib2to3
python3-minimal python3-pkg-resources python3-setuptools python3.7
python3.7-dev python3.7-minimal sbuild-build-depends-python-pyvcf-dummy
sensible-utils
The following packages will be upgraded:
libncursesw6 libtinfo6
2 upgraded, 63 newly installed, 0 to remove and 94 not upgraded.
Need to get 75.8 MB of archives.
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Get:1 copy:/<<BUILDDIR>>/resolver-5cBXIc/apt_archive ./ sbuild-build-depends-python-pyvcf-dummy 0.invalid.0 [892 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20190803-1 [314 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.8.7-3 [1254 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1c-1 [1259 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.4-3 [584 kB]
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Get:16 http://172.17.0.1/private bullseye-staging/main armhf libtinfo6 armhf 6.1+20190803-1 [318 kB]
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Get:18 http://172.17.0.1/private bullseye-staging/main armhf libreadline8 armhf 8.0-3 [138 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.4-3 [1673 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.4-3 [340 kB]
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Get:23 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.37-5 [253 kB]
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Get:26 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.37-5 [66.2 kB]
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Get:30 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
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Get:32 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
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Get:34 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.2-2 [1299 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-9 [547 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
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Get:39 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.5.0-1 [22.8 kB]
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Get:42 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-1 [69.7 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.60.6-2 [1109 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b2 [571 kB]
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Get:47 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20190803-1 [79.3 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.5.4 [1035 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.7.4-3 [78.2 kB]
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Get:54 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20190722 [99.5 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.7-2 [128 kB]
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Get:57 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-dev armhf 3.7.4-3 [47.2 MB]
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Get:59 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.7.3-1 [1068 B]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.7.3-1 [1068 B]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf python3.7-dev armhf 3.7.4-3 [513 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.7.3-1 [1264 B]
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Get:64 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 41.1.0-1 [154 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 41.1.0-1 [307 kB]
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Setting up libpipeline1:armhf (1.5.1-2) ...
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No schema files found: doing nothing.
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Setting up libexpat1-dev:armhf (2.2.7-2) ...
Setting up libncurses6:armhf (6.1+20190803-1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-9) ...
Setting up sensible-utils (0.0.12) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libmpdec2:armhf (2.4.2-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
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Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7+b2) ...
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Setting up libpython3.7-stdlib:armhf (3.7.4-3) ...
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Setting up libtool (2.4.6-9) ...
Setting up libpython3.7-dev:armhf (3.7.4-3) ...
Setting up m4 (1.4.18-2) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11) ...
Setting up dwz (0.13-1) ...
Setting up groff-base (1.22.4-3) ...
Setting up libpython3-stdlib:armhf (3.7.3-1) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up python3.7 (3.7.4-3) ...
Setting up gettext (0.19.8.1-9) ...
Setting up libpython3-dev:armhf (3.7.3-1) ...
Setting up python3 (3.7.3-1) ...
Setting up man-db (2.8.7-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3.7-dev (3.7.4-3) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libpython3-all-dev:armhf (3.7.3-1) ...
Setting up cython3 (0.29.2-2) ...
Setting up python3-lib2to3 (3.7.4-3) ...
Setting up python3-pkg-resources (41.1.0-1) ...
Setting up python3-distutils (3.7.4-3) ...
Setting up dh-python (4.20190722) ...
Setting up python3-setuptools (41.1.0-1) ...
Setting up po-debconf (1.0.21) ...
Setting up python3-all (3.7.3-1) ...
Setting up python3-dev (3.7.3-1) ...
Setting up python3-all-dev (3.7.3-1) ...
Setting up debhelper (12.5.4) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (1.5.0-1) ...
Setting up sbuild-build-depends-python-pyvcf-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.28-10+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.31.1-16+rpi1 dpkg-dev_1.19.7 g++-8_8.3.0-6+rpi1 gcc-8_8.3.0-6+rpi1 libc6-dev_2.28-10+rpi1 libstdc++-8-dev_8.3.0-6+rpi1 libstdc++6_8.3.0-6+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.3+rpi1 base-passwd_3.5.46 bash_5.0-4 binutils_2.31.1-16+rpi1 binutils-arm-linux-gnueabihf_2.31.1-16+rpi1 binutils-common_2.31.1-16+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9.1 coreutils_8.30-3 cpp_4:8.3.0-1+rpi2 cpp-8_8.3.0-6+rpi1 cython3_0.29.2-2 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.5.4 debianutils_4.8.6.1 dh-autoreconf_19 dh-python_4.20190722 dh-strip-nondeterminism_1.5.0-1 diffutils_1:3.7-3 dirmngr_2.2.12-1+rpi1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.37-5 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1+rpi2 g++-8_8.3.0-6+rpi1 gcc_4:8.3.0-1+rpi2 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1+b1 gcc-7-base_7.3.0-19 gcc-8_8.3.0-6+rpi1 gcc-8-base_8.3.0-6+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.12-1+rpi1 gnupg-l10n_2.2.12-1+rpi1 gnupg-utils_2.2.12-1+rpi1 gpg_2.2.12-1+rpi1 gpg-agent_2.2.12-1+rpi1 gpg-wks-client_2.2.12-1+rpi1 gpg-wks-server_2.2.12-1+rpi1 gpgconf_2.2.12-1+rpi1 gpgsm_2.2.12-1+rpi1 gpgv_2.2.12-1+rpi1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.2 libarchive-zip-perl_1.64-1 libasan5_8.3.0-6+rpi1 libassuan0_2.5.2-1 libatomic1_8.3.0-6+rpi1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-3 libaudit1_1:2.8.4-3 libbinutils_2.31.1-16+rpi1 libblkid1_2.33.1-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.6-9.1 libc-bin_2.28-10+rpi1 libc-dev-bin_2.28-10+rpi1 libc6_2.28-10+rpi1 libc6-dev_2.28-10+rpi1 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-6+rpi1 libcom-err2_1.44.5-1 libcroco3_0.6.13-1 libdb5.3_5.3.28+dfsg1-0.5 libdebconfclient0_0.249 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.7-2 libexpat1-dev_2.2.7-2 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.5.0-1 libgcc-8-dev_8.3.0-6+rpi1 libgcc1_1:8.3.0-6+rpi1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libglib2.0-0_2.60.6-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-4 libgomp1_8.3.0-6+rpi1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1 libicu63_63.2-2 libidn2-0_2.0.5-1 libisl19_0.20-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.47+dfsg-3+rpi1 libldap-common_2.4.47+dfsg-3+rpi1 liblocale-gettext-perl_1.07-3+b3 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.4.1-1 libnpth0_1.6-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpython3-all-dev_3.7.3-1 libpython3-dev_3.7.3-1 libpython3-stdlib_3.7.3-1 libpython3.7_3.7.4-3 libpython3.7-dev_3.7.4-3 libpython3.7-minimal_3.7.4-3 libpython3.7-stdlib_3.7.4-3 libreadline7_7.0-5 libreadline8_8.0-3 libsasl2-2_2.1.27+dfsg-1+b1 libsasl2-modules-db_2.1.27+dfsg-1+b1 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.27.2-3 libss2_1.44.5-1 libssl1.1_1.1.1c-1 libstdc++-8-dev_8.3.0-6+rpi1 libstdc++6_8.3.0-6+rpi1 libsub-override-perl_0.09-2 libsystemd0_241-5+rpi1 libtasn1-6_4.13-3 libtext-charwidth-perl_0.04-7.1+b1 libtext-iconv-perl_1.7-5+b10 libtext-wrapi18n-perl_0.06-7.1 libtinfo5_6.1+20190803-1 libtinfo6_6.1+20190803-1 libtool_2.4.6-9 libubsan1_8.3.0-6+rpi1 libuchardet0_0.0.6-3 libudev1_241-5+rpi1 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml2_2.9.4+dfsg1-7+b2 libzstd1_1.3.8+dfsg-3+rpi1 linux-libc-dev_4.18.20-2+rpi1 login_1:4.5-1.1 lsb-base_10.2019051400+rpi1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.7-3 mawk_1.3.3-17 mime-support_3.63 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 netbase_5.6 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pinentry-curses_1.1.0-2 po-debconf_1.0.21 python3_3.7.3-1 python3-all_3.7.3-1 python3-all-dev_3.7.3-1 python3-dev_3.7.3-1 python3-distutils_3.7.4-3 python3-lib2to3_3.7.4-3 python3-minimal_3.7.3-1 python3-pkg-resources_41.1.0-1 python3-setuptools_41.1.0-1 python3.7_3.7.4-3 python3.7-dev_3.7.4-3 python3.7-minimal_3.7.4-3 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-pyvcf-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 tzdata_2019a-1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Sep 2 15:10:03 2019 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-pyvcf_0.6.8+git20170215.476169c-2.dsc
dpkg-source: info: extracting python-pyvcf in /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c
dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz
dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c-2.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-38a9bcb9-d4f3-462c-bdd8-0c1cbb0d4c76
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-pyvcf
dpkg-buildpackage: info: source version 0.6.8+git20170215.476169c-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:217: python3.7 setup.py clean
running clean
removing '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.7 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf
copying vcf/__init__.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf
copying vcf/filters.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf
copying vcf/model.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf
copying vcf/parser.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf
copying vcf/sample_filter.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf
copying vcf/utils.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/__init__.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/prof.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/test_vcf.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
running egg_info
creating PyVCF.egg-info
writing PyVCF.egg-info/PKG-INFO
writing dependency_links to PyVCF.egg-info/dependency_links.txt
writing entry points to PyVCF.egg-info/entry_points.txt
writing requirements to PyVCF.egg-info/requires.txt
writing top-level names to PyVCF.egg-info/top_level.txt
writing manifest file 'PyVCF.egg-info/SOURCES.txt'
reading manifest file 'PyVCF.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'PyVCF.egg-info/SOURCES.txt'
copying vcf/cparse.pyx -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf
copying vcf/test/1kg.sites.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/FT.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/bad-info-character.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/bcftools.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/contig_idonly.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/example-4.0.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/example-4.1-bnd.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/example-4.1-info-multiple-values.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/example-4.1-ploidy.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/example-4.1-sv.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/example-4.1.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/example-4.2.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/freebayes.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/gatk.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/gatk_26_meta.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/gonl.chr20.release4.gtc.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/info-type-character.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/issue-140-file1.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/issue-140-file2.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/issue-140-file3.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/issue-16.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/issue-214.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/issue-254.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/issue_49.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/metadata-whitespace.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/mixed-filtering.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/null_genotype_mono.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/parse-meta-line.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/samples-space.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/samtools.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/strelka.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/string_as_flag.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/uncalled_genotypes.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/walk_left.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/walk_refcall.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/1kg.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/issue-201.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/tb.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/issue-201.vcf.gz.tbi -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
copying vcf/test/tb.vcf.gz.tbi -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test
Fixing /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/__init__.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/filters.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/model.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/parser.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/sample_filter.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/utils.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/__init__.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/prof.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py
Skipping optional fixer: buffer
Skipping optional fixer: idioms
Skipping optional fixer: set_literal
Skipping optional fixer: ws_comma
Fixing /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/__init__.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/filters.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/model.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/parser.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/sample_filter.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/utils.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/__init__.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/prof.py /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py
Skipping optional fixer: buffer
Skipping optional fixer: idioms
Skipping optional fixer: set_literal
Skipping optional fixer: ws_comma
running build_ext
cythoning vcf/cparse.pyx to vcf/cparse.c
building 'vcf.cparse' extension
creating build
creating build/temp.linux-armhf-3.7
creating build/temp.linux-armhf-3.7/vcf
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c vcf/cparse.c -o build/temp.linux-armhf-3.7/vcf/cparse.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/vcf/cparse.o -o /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/cparse.cpython-37m-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.7
copying and adjusting scripts/vcf_melt -> build/scripts-3.7
copying and adjusting scripts/vcf_filter.py -> build/scripts-3.7
copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-3.7
changing mode of build/scripts-3.7/vcf_melt from 664 to 775
changing mode of build/scripts-3.7/vcf_filter.py from 664 to 775
changing mode of build/scripts-3.7/vcf_sample_filter.py from 664 to 775
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/vcf/cparse.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
warning: vcf/cparse.pyx:29:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
warning: vcf/cparse.pyx:29:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
warning: vcf/cparse.pyx:29:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
warning: vcf/cparse.pyx:29:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:217: python3.7 setup.py test
running test
running build_py
running egg_info
writing PyVCF.egg-info/PKG-INFO
writing dependency_links to PyVCF.egg-info/dependency_links.txt
writing entry points to PyVCF.egg-info/entry_points.txt
writing requirements to PyVCF.egg-info/requires.txt
writing top-level names to PyVCF.egg-info/top_level.txt
reading manifest file 'PyVCF.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'PyVCF.egg-info/SOURCES.txt'
running egg_info
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/PyVCF.egg-info
writing /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/PyVCF.egg-info/PKG-INFO
writing dependency_links to /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/PyVCF.egg-info/dependency_links.txt
writing entry points to /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/PyVCF.egg-info/entry_points.txt
writing requirements to /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/PyVCF.egg-info/requires.txt
writing top-level names to /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/PyVCF.egg-info/top_level.txt
writing manifest file '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/PyVCF.egg-info/SOURCES.txt'
reading manifest file '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/PyVCF.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/PyVCF.egg-info/SOURCES.txt'
running build_ext
skipping 'vcf/cparse.c' Cython extension (up-to-date)
test_contig_idonly (vcf.test.test_vcf.TestVcfSpecs)
Test VCF inputs with ##contig inputs containing only IDs. produced by bcftools 1.2+ ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/contig_idonly.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_vcf_4_0 (vcf.test.test_vcf.TestVcfSpecs) ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_vcf_4_1 (vcf.test.test_vcf.TestVcfSpecs) ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_vcf_4_1_bnd (vcf.test.test_vcf.TestVcfSpecs) ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1-bnd.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_vcf_4_1_sv (vcf.test.test_vcf.TestVcfSpecs) ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1-sv.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_vcf_4_2 (vcf.test.test_vcf.TestVcfSpecs) ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.2.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testCalls (vcf.test.test_vcf.TestGatkOutput) ... ok
testFormats (vcf.test.test_vcf.TestGatkOutput) ... ok
testInfos (vcf.test.test_vcf.TestGatkOutput) ... ok
testSamples (vcf.test.test_vcf.TestGatkOutput) ... ok
testCalls (vcf.test.test_vcf.TestFreebayesOutput) ... ok
testFormats (vcf.test.test_vcf.TestFreebayesOutput) ... ok
testInfos (vcf.test.test_vcf.TestFreebayesOutput) ... ok
testParse (vcf.test.test_vcf.TestFreebayesOutput) ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/freebayes.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testSamples (vcf.test.test_vcf.TestFreebayesOutput) ... ok
testParse (vcf.test.test_vcf.TestSamtoolsOutput) ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/samtools.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testParse (vcf.test.test_vcf.TestBcfToolsOutput) ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/bcftools.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_issue_214_is_snp (vcf.test.test_vcf.TestIssue214) ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-214.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_issue_214_ref_is_del_is_snp (vcf.test.test_vcf.TestIssue214) ... ok
test_issue_214_ref_is_del_var_type (vcf.test.test_vcf.TestIssue214) ... ok
test_issue_214_var_type (vcf.test.test_vcf.TestIssue214) ... ok
testParse (vcf.test.test_vcf.Test1kg) ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.BufferedReader name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/1kg.vcf.gz'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_issue_49 (vcf.test.test_vcf.Test1kg)
docstring for test_issue_49 ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue_49.vcf' mode='r' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_reader (vcf.test.test_vcf.Test1kgSites)
The samples attribute should be the empty list. ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/1kg.sites.vcf' mode='r' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_writer (vcf.test.test_vcf.Test1kgSites)
FORMAT should not be written if not present in the template and no ... ok
testParse (vcf.test.test_vcf.TestGoNL) ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/gonl.chr20.release4.gtc.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_contig_line (vcf.test.test_vcf.TestGoNL) ... ok
test_string_as_flag (vcf.test.test_vcf.TestStringAsFlag)
A flag INFO field is declared as string (not allowed by the spec, ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/string_as_flag.vcf' mode='r' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_writer (vcf.test.test_vcf.TestInfoOrder) ... ok
test_parse (vcf.test.test_vcf.TestInfoTypeCharacter) ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/info-type-character.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_write (vcf.test.test_vcf.TestInfoTypeCharacter) ... ok
test_parse (vcf.test.test_vcf.TestParseMetaLine) ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/parse-meta-line.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_write (vcf.test.test_vcf.TestParseMetaLine) ... ok
testWrite (vcf.test.test_vcf.TestGatkOutputWriter) ... Record(CHROM=1, POS=2, REF=A, ALT=[T])
T
Call(sample=Germline, CallData(GT=0|1, MQ=[0, 40], HAP=[35, 46]))
Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 0], HAP=[35, 46]))
Record(CHROM=1, POS=2, REF=T, ALT=[T[2:3[])
T[2:3[
Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['35>35', '46>46']))
Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 40], BHAP=['35>35', '46>17']))
Record(CHROM=1, POS=3, REF=A, ALT=[]2:2]A])
]2:2]A
Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['35>35', '46>46']))
Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 40], BHAP=['35>35', '46>17']))
Record(CHROM=2, POS=1, REF=G, ALT=[T])
T
Call(sample=Germline, CallData(GT=1|0, MQ=[0, 40], HAP=[17, 23]))
Call(sample=Tumor, CallData(GT=1|0, MQ=[0, 0], HAP=[17, 23]))
Record(CHROM=2, POS=2, REF=G, ALT=[G[1:3[])
G[1:3[
Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['17>17', '23>23'], BCN=['1', '1']))
Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 40], BHAP=['23>23', '17>46'], BCN=['2', '1']))
Record(CHROM=2, POS=3, REF=G, ALT=[]1:2]G])
]1:2]G
Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['17>17', '23>23'], BCN=['1', '1']))
Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 40], BHAP=['23>23', '17>46'], BCN=['2', '1']))
Record(CHROM=2, POS=4, REF=G, ALT=[]2:6]G])
]2:6]G
Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['17>17', '23>23'], AHAP=[17, 23], BCN=['1', '1']))
Call(sample=Tumor, CallData(GT=0|0|1, MQ=[0, 0, 40], BHAP=['17>17', '23>23', '24>23'], AHAP=[17, 23, 23], BCN=['1', '2', '2']))
Record(CHROM=2, POS=6, REF=T, ALT=[T[2:4[])
T[2:4[
Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['17>17', '23>23'], AHAP=[17, 23], BCN=['1', '1']))
Call(sample=Tumor, CallData(GT=0|1|0, MQ=[0, 40, 0], BHAP=['17>17', '23>24', '24>24'], AHAP=[17, 23, 23], BCN=['1', '2', '2']))
Record(CHROM=2, POS=6, REF=T, ALT=[A])
A
Call(sample=Germline, CallData(GT=0|1, MQ=[0, 40], HAP=[23, 17], AHAP=[23, 17]))
Call(sample=Tumor, CallData(GT=0|1|1, MQ=[0, 0, 0], HAP=[17, 23, 24], AHAP=[17, 23, 23]))
Record(CHROM=2, POS=8, REF=T, ALT=[A])
A
Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], HAP=[23, 17], AHAP=[23, 17]))
Call(sample=Tumor, CallData(GT=0|1|1, MQ=[0, 40, 40], HAP=[17, 23, 24], AHAP=[17, 23, 23]))
Record(CHROM=1, POS=2827693, REF=CCGTGGATGCGGGGACCCGCATCCCCTCTCCCTTCACAGCTGAGTGACCCACATCCCCTCTCCCCTCGCA, ALT=[C])
C
Call(sample=NA00001, CallData(GT=1/1, GQ=13.9))
Record(CHROM=2, POS=321682, REF=T, ALT=[<DEL>])
<DEL>
Call(sample=NA00001, CallData(GT=0/1, GQ=12.0))
Record(CHROM=2, POS=14477084, REF=C, ALT=[<DEL:ME:ALU>])
<DEL:ME:ALU>
Call(sample=NA00001, CallData(GT=0/1, GQ=12.0))
Record(CHROM=3, POS=9425916, REF=C, ALT=[<INS:ME:L1>])
<INS:ME:L1>
Call(sample=NA00001, CallData(GT=1/1, GQ=15.0))
Record(CHROM=3, POS=12665100, REF=A, ALT=[<DUP>])
<DUP>
Call(sample=NA00001, CallData(GT=./., GQ=0.0, CN=3, CNQ=16.2))
Record(CHROM=4, POS=18665128, REF=T, ALT=[<DUP:TANDEM>])
<DUP:TANDEM>
Call(sample=NA00001, CallData(GT=./., GQ=0.0, CN=5, CNQ=8.3))
['BLANK', 'NA12878', 'NA12891', 'NA12892', 'NA19238', 'NA19239', 'NA19240']
##fileformat=VCFv4.1
##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[reads.bam] read_buffer_size=null phone_home=NO_ET read_filter=[] intervals=[chr22:42020321-42527953] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL reference_sequence=/data/reference/ucsc/hg19/ucsc.hg19.fasta rodBind=[] nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=250 baq=CALCULATE_AS_NECESSARY baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=2 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false logging_level=INFO log_to_file=gatk.log help=false genotype_likelihoods_model=SNP p_nonref_model=EXACT heterozygosity=0.001 pcr_error_rate=1.0E-4 genotyping_mode=DISCOVERY output_mode=EMIT_VARIANTS_ONLY standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=30.0 computeSLOD=false alleles=(RodBinding name= source=UNBOUND) min_base_quality_score=17 max_deletion_fraction=0.15 multiallelic=false max_alternate_alleles=5 min_indel_count_for_genotyping=5 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10.0 indelGapOpenPenalty=45.0 indelHaplotypeSize=80 bandedIndel=false indelDebug=false ignoreSNPAlleles=false dbsnp=(RodBinding name=dbsnp source=/data/reference/dbSNP_132/dbsnp_132.hg19.vcf) out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub debug_file=null metrics_file=null annotation=[] excludeAnnotation=[] filter_mismatching_base_and_quals=false"
##reference=file:///data/reference/ucsc/hg19/ucsc.hg19.fasta
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
##INFO=<ID=Dels,Number=1,Type=Float,Description="Fraction of Reads Containing Spanning Deletions">
##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
##INFO=<ID=HRun,Number=1,Type=Integer,Description="Largest Contiguous Homopolymer Run of Variant Allele In Either Direction">
##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes">
##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
##INFO=<ID=MQ0,Number=1,Type=Integer,Description="Total Mapping Quality Zero Reads">
##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype Quality">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##contig=<ID=chr1,length=249250621>
##contig=<ID=chr10,length=135534747>
##contig=<ID=chr11,length=135006516>
##contig=<ID=chr11_gl000202_random,length=40103>
##contig=<ID=chr12,length=133851895>
##contig=<ID=chr13,length=115169878>
##contig=<ID=chr14,length=107349540>
##contig=<ID=chr15,length=102531392>
##contig=<ID=chr16,length=90354753>
##contig=<ID=chr17,length=81195210>
##contig=<ID=chr17_ctg5_hap1,length=1680828>
##contig=<ID=chr17_gl000203_random,length=37498>
##contig=<ID=chr17_gl000204_random,length=81310>
##contig=<ID=chr17_gl000205_random,length=174588>
##contig=<ID=chr17_gl000206_random,length=41001>
##contig=<ID=chr18,length=78077248>
##contig=<ID=chr18_gl000207_random,length=4262>
##contig=<ID=chr19,length=59128983>
##contig=<ID=chr19_gl000208_random,length=92689>
##contig=<ID=chr19_gl000209_random,length=159169>
##contig=<ID=chr1_gl000191_random,length=106433>
##contig=<ID=chr1_gl000192_random,length=547496>
##contig=<ID=chr2,length=243199373>
##contig=<ID=chr20,length=63025520>
##contig=<ID=chr21,length=48129895>
##contig=<ID=chr21_gl000210_random,length=27682>
##contig=<ID=chr22,length=51304566>
##contig=<ID=chr3,length=198022430>
##contig=<ID=chr4,length=191154276>
##contig=<ID=chr4_ctg9_hap1,length=590426>
##contig=<ID=chr4_gl000193_random,length=189789>
##contig=<ID=chr4_gl000194_random,length=191469>
##contig=<ID=chr5,length=180915260>
##contig=<ID=chr6,length=171115067>
##contig=<ID=chr6_apd_hap1,length=4622290>
##contig=<ID=chr6_cox_hap2,length=4795371>
##contig=<ID=chr6_dbb_hap3,length=4610396>
##contig=<ID=chr6_mann_hap4,length=4683263>
##contig=<ID=chr6_mcf_hap5,length=4833398>
##contig=<ID=chr6_qbl_hap6,length=4611984>
##contig=<ID=chr6_ssto_hap7,length=4928567>
##contig=<ID=chr7,length=159138663>
##contig=<ID=chr7_gl000195_random,length=182896>
##contig=<ID=chr8,length=146364022>
##contig=<ID=chr8_gl000196_random,length=38914>
##contig=<ID=chr8_gl000197_random,length=37175>
##contig=<ID=chr9,length=141213431>
##contig=<ID=chr9_gl000198_random,length=90085>
##contig=<ID=chr9_gl000199_random,length=169874>
##contig=<ID=chr9_gl000200_random,length=187035>
##contig=<ID=chr9_gl000201_random,length=36148>
##contig=<ID=chrM,length=16571>
##contig=<ID=chrUn_gl000211,length=166566>
##contig=<ID=chrUn_gl000212,length=186858>
##contig=<ID=chrUn_gl000213,length=164239>
##contig=<ID=chrUn_gl000214,length=137718>
##contig=<ID=chrUn_gl000215,length=172545>
##contig=<ID=chrUn_gl000216,length=172294>
##contig=<ID=chrUn_gl000217,length=172149>
##contig=<ID=chrUn_gl000218,length=161147>
##contig=<ID=chrUn_gl000219,length=179198>
##contig=<ID=chrUn_gl000220,length=161802>
##contig=<ID=chrUn_gl000221,length=155397>
##contig=<ID=chrUn_gl000222,length=186861>
##contig=<ID=chrUn_gl000223,length=180455>
##contig=<ID=chrUn_gl000224,length=179693>
##contig=<ID=chrUn_gl000225,length=211173>
##contig=<ID=chrUn_gl000226,length=15008>
##contig=<ID=chrUn_gl000227,length=128374>
##contig=<ID=chrUn_gl000228,length=129120>
##contig=<ID=chrUn_gl000229,length=19913>
##contig=<ID=chrUn_gl000230,length=43691>
##contig=<ID=chrUn_gl000231,length=27386>
##contig=<ID=chrUn_gl000232,length=40652>
##contig=<ID=chrUn_gl000233,length=45941>
##contig=<ID=chrUn_gl000234,length=40531>
##contig=<ID=chrUn_gl000235,length=34474>
##contig=<ID=chrUn_gl000236,length=41934>
##contig=<ID=chrUn_gl000237,length=45867>
##contig=<ID=chrUn_gl000238,length=39939>
##contig=<ID=chrUn_gl000239,length=33824>
##contig=<ID=chrUn_gl000240,length=41933>
##contig=<ID=chrUn_gl000241,length=42152>
##contig=<ID=chrUn_gl000242,length=43523>
##contig=<ID=chrUn_gl000243,length=43341>
##contig=<ID=chrUn_gl000244,length=39929>
##contig=<ID=chrUn_gl000245,length=36651>
##contig=<ID=chrUn_gl000246,length=38154>
##contig=<ID=chrUn_gl000247,length=36422>
##contig=<ID=chrUn_gl000248,length=39786>
##contig=<ID=chrUn_gl000249,length=38502>
##contig=<ID=chrX,length=155270560>
##contig=<ID=chrY,length=59373566>
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT BLANK NA12878 NA12891 NA12892 NA19238 NA19239 NA19240
chr22 42522392 rs28371738 G A 2951.95 . AC=2;AF=0.143;AN=14;BaseQRankSum=0.375;DB;DP=1506;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=123.5516;MQ=253.92;MQ0=0;MQRankSum=0.685;QD=5.9;ReadPosRankSum=0.59 GT:AD:DP:GQ:PL 0/0:6,0:6:18.04:0,18,211 0/1:138,107:250:99.0:1961,0,3049 0/1:169,77:250:99.0:1038,0,3533 0/0:249,0:250:99.0:0,600,5732 0/0:248,1:250:99.0:0,627,6191 0/0:250,0:250:99.0:0,615,5899 0/0:250,0:250:99.0:0,579,5674
chr22 42522613 rs1135840 G C 11611.03 . AC=6;AF=0.429;AN=14;BaseQRankSum=16.289;DB;DP=1518;DS;Dels=0.03;FS=0.0;HRun=0;HaplotypeScore=142.5716;MQ=242.46;MQ0=0;MQRankSum=2.01;QD=9.16;ReadPosRankSum=-1.731 GT:AD:DP:GQ:PL 0/1:13,4:17:62.64:63,0,296 0/1:118,127:246:99.0:2396,0,1719 0/0:241,0:244:99.0:0,459,4476 0/1:161,85:246:99.0:1489,0,2353 0/1:110,132:242:99.0:2561,0,1488 0/1:106,135:242:99.0:2613,0,1389 0/1:116,126:243:99.0:2489,0,1537
chr22 42522755 . C G 36.98 . AC=1;AF=0.071;AN=14;BaseQRankSum=-14.866;DP=1527;DS;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=253.4254;MQ=197.36;MQ0=2;MQRankSum=-10.81;QD=0.15;ReadPosRankSum=-17.244 GT:AD:DP:GQ:PL 0/0:26,1:27:51.08:0,51,570 0/0:208,40:248:99.0:0,236,4169 0/0:192,56:249:99.0:0,114,4292 0/1:179,66:245:75.42:75,0,3683 0/0:214,32:246:99.0:0,172,4235 0/0:200,49:249:61.05:0,61,4049 0/0:195,50:246:32.07:0,32,3757
chr22 42523003 rs116917064 A G 7113.55 . AC=8;AF=0.571;AN=14;BaseQRankSum=6.026;DB;DP=1433;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=101.7894;MQ=182.04;MQ0=0;MQRankSum=-2.501;QD=4.96;ReadPosRankSum=8.294 GT:AD:DP:GQ:PL 0/1:10,2:12:0.62:1,0,257 1/1:9,173:183:99.0:2385,273,0 0/1:153,95:249:99.0:355,0,2355 0/1:140,110:250:99.0:1334,0,2242 0/1:164,85:249:99.0:1070,0,2279 0/1:160,90:250:99.0:1245,0,2300 0/1:156,81:238:99.0:724,0,2764
chr22 42523077 . A G 54.31 . AC=1;AF=0.071;AN=14;BaseQRankSum=-0.563;DP=1521;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=54.8434;MQ=164.04;MQ0=1;MQRankSum=-2.419;QD=2.59;ReadPosRankSum=-1.229 GT:AD:DP:GQ:PL 0/1:17,4:21:92.74:93,0,533 0/0:249,1:250:99.0:0,544,6985 0/0:250,0:250:99.0:0,577,6968 0/0:248,2:250:99.0:0,605,7687 0/0:248,1:249:99.0:0,583,7300 0/0:246,2:249:99.0:0,626,7473 0/0:248,1:249:99.0:0,594,7553
chr22 42523209 rs28371730 T C 15556.89 . AC=8;AF=0.571;AN=14;BaseQRankSum=3.458;DB;DP=1509;DS;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=120.8206;MQ=221.07;MQ0=0;MQRankSum=-4.945;QD=10.31;ReadPosRankSum=0.639 GT:AD:DP:GQ:PL 0/1:3,6:9:99.0:154,0,101 1/1:6,237:247:99.0:4532,308,0 0/1:130,117:248:99.0:1399,0,3147 0/1:112,129:244:99.0:2641,0,2556 0/1:115,127:247:99.0:2320,0,2526 0/1:115,128:248:99.0:2546,0,2520 0/1:143,104:249:99.0:1965,0,3288
chr22 42523211 rs2004511 T C 2445.52 . AC=2;AF=0.143;AN=14;BaseQRankSum=10.587;DB;DP=1509;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=102.7564;MQ=221.5;MQ0=0;MQRankSum=-6.926;QD=4.89;ReadPosRankSum=2.057 GT:AD:DP:GQ:PL 0/0:9,0:9:24.06:0,24,289 0/1:136,113:250:99.0:1384,0,2176 0/1:146,104:250:99.0:1108,0,2809 0/0:247,3:250:99.0:0,439,5546 0/0:245,2:249:99.0:0,459,5316 0/0:248,2:250:99.0:0,459,5404 0/0:248,1:250:99.0:0,533,6069
chr22 42523409 rs1985842 G T 6801.9 . AC=6;AF=0.429;AN=14;BaseQRankSum=20.509;DB;DP=1454;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=150.8967;MQ=200.12;MQ0=0;MQRankSum=4.472;QD=5.65;ReadPosRankSum=9.396 GT:AD:DP:GQ:PL 0/1:1,3:4:25.84:53,0,26 0/1:153,95:249:99.0:1597,0,1798 0/0:245,4:250:99.0:0,336,4079 0/1:168,82:250:99.0:1339,0,1880 0/1:147,103:250:99.0:1522,0,1805 0/1:156,94:250:99.0:1341,0,2322 0/1:129,71:201:99.0:949,0,2082
chr22 42523805 rs28371725 C T 1637.33 . AC=1;AF=0.071;AN=14;BaseQRankSum=-0.379;DB;DP=1516;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=77.2321;MQ=226.05;MQ0=0;MQRankSum=2.862;QD=6.55;ReadPosRankSum=0.064 GT:AD:DP:GQ:PL 0/0:16,0:16:39.09:0,39,475 0/0:248,1:249:99.0:0,613,7187 0/1:132,116:248:99.0:1676,0,2916 0/0:248,0:248:99.0:0,625,7171 0/0:248,2:250:99.0:0,604,7252 0/0:250,0:250:99.0:0,631,7426 0/0:248,1:249:99.0:0,584,6964
chr22 42523943 rs16947 A G 23661.1 . AC=8;AF=0.571;AN=14;BaseQRankSum=4.602;DB;DP=1514;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=38.3217;MQ=238.64;MQ0=0;MQRankSum=2.485;QD=15.63;ReadPosRankSum=3.749 GT:AD:DP:GQ:PL 0/1:9,5:14:99.0:163,0,303 1/1:3,246:250:99.0:8092,667,0 0/1:129,116:246:99.0:3190,0,2852 0/1:149,98:247:99.0:2429,0,3588 0/1:129,118:247:99.0:3267,0,3052 0/1:122,123:245:99.0:3428,0,3052 0/1:124,119:244:99.0:3092,0,2845
chr22 42524150 . C G 3758.65 . AC=8;AF=0.571;AN=14;BaseQRankSum=24.314;DP=1506;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=172.5901;MQ=242.92;MQ0=0;MQRankSum=11.537;QD=2.5;ReadPosRankSum=-9.185 GT:AD:DP:GQ:PL 1/1:3,3:6:5.98:46,6,0 0/1:161,88:250:99.0:708,0,300 0/1:161,88:250:99.0:635,0,308 0/1:160,90:250:99.0:658,0,229 0/1:180,69:250:99.0:478,0,113 0/1:176,73:250:99.0:530,0,271 0/1:170,79:249:99.0:704,0,133
chr22 42524435 rs1807313 T A 5252.25 . AC=3;AF=0.214;AN=14;BaseQRankSum=-0.192;DB;DP=1526;DS;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=152.3866;MQ=242.06;MQ0=0;MQRankSum=1.923;QD=9.99;ReadPosRankSum=3.008 GT:AD:DP:GQ:PL 0/1:7,19:26:99.0:456,0,195 0/0:250,0:250:99.0:0,698,8167 0/0:246,2:249:99.0:0,673,7735 0/0:248,2:250:99.0:0,685,7919 0/0:250,0:250:99.0:0,688,7814 0/1:120,126:247:99.0:2539,0,3250 0/1:131,110:246:99.0:2257,0,3278
chr22 42524696 rs58440431 T C 6423.61 . AC=2;AF=0.143;AN=14;BaseQRankSum=3.119;DB;DP=1509;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=53.0005;MQ=230.78;MQ0=0;MQRankSum=2.825;QD=12.85;ReadPosRankSum=2.051 GT:AD:DP:GQ:PL 0/0:9,0:9:27.08:0,27,351 0/1:132,116:250:99.0:3341,0,3914 0/1:141,108:250:99.0:3082,0,3917 0/0:248,1:250:99.0:0,692,8578 0/0:250,0:250:99.0:0,743,8836 0/0:247,2:250:99.0:0,695,8726 0/0:249,1:250:99.0:0,699,8650
chr22 42524947 rs3892097 C T 731.18 . AC=2;AF=0.143;AN=14;BaseQRankSum=0.602;DB;DP=1495;DS;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=154.5421;MQ=217.65;MQ0=0;MQRankSum=4.304;QD=1.47;ReadPosRankSum=1.019 GT:AD:DP:GQ:PL 0/0:3,0:3:8.99:0,9,89 0/1:108,75:244:99.0:403,0,1684 0/1:125,74:242:99.0:375,0,2335 0/0:227,1:249:99.0:0,460,5036 0/0:226,1:247:99.0:0,448,4884 0/0:192,1:247:99.0:0,400,4405 0/0:194,1:247:99.0:0,405,4694
chr22 42525132 rs1058164 G C 14639.91 . AC=5;AF=0.357;AN=14;BaseQRankSum=4.944;DB;DP=1508;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=38.1229;MQ=207.02;MQ0=6;MQRankSum=2.51;QD=11.71;ReadPosRankSum=0.306 GT:AD:DP:GQ:PL 0/0:8,0:8:24.05:0,24,309 0/1:125,125:250:99.0:3147,0,3294 0/0:245,1:248:99.0:0,549,7172 0/1:139,109:248:99.0:2470,0,3232 0/1:136,107:243:99.0:2545,0,3408 0/1:116,130:247:99.0:3206,0,2926 0/1:122,124:247:99.0:3271,0,3300
chr22 42525772 rs28371706 G A 7552.52 . AC=4;AF=0.286;AN=14;BaseQRankSum=12.028;DB;DP=1506;DS;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=89.8512;MQ=222.09;MQ0=0;MQRankSum=5.2;QD=9.99;ReadPosRankSum=2.275 GT:AD:DP:GQ:PL 0/1:4,2:6:29.34:29,0,147 0/0:249,0:249:99.0:0,592,6835 0/0:249,1:250:99.0:0,590,7041 0/0:248,0:248:99.0:0,652,7316 0/1:126,120:248:99.0:2668,0,2833 0/1:134,113:247:99.0:2453,0,2485 0/1:137,113:250:99.0:2403,0,2988
chr22 42525798 rs28371705 G C 1954.58 . AC=2;AF=0.143;AN=14;BaseQRankSum=6.229;DB;DP=1509;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=36.0442;MQ=228.55;MQ0=0;MQRankSum=0.852;QD=3.91;ReadPosRankSum=6.52 GT:AD:DP:GQ:PL 0/0:9,0:9:27.08:0,27,342 0/1:164,85:250:99.0:981,0,3519 0/1:171,79:250:99.0:1020,0,3665 0/0:249,1:250:99.0:0,526,6474 0/0:249,1:250:99.0:0,550,6481 0/0:248,2:250:99.0:0,542,6933 0/0:250,0:250:99.0:0,604,7282
chr22 42525811 rs28371704 T C 3688.26 . AC=2;AF=0.143;AN=14;BaseQRankSum=4.752;DB;DP=1510;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=36.9902;MQ=210.28;MQ0=0;MQRankSum=2.309;QD=7.38;ReadPosRankSum=6.262 GT:AD:DP:GQ:PL 0/0:10,0:10:27.06:0,27,333 0/1:163,86:249:99.0:1958,0,3391 0/1:167,78:245:99.0:1730,0,3945 0/0:248,1:249:99.0:0,542,6887 0/0:246,1:247:99.0:0,550,6569 0/0:247,1:250:99.0:0,548,6954 0/0:249,1:250:99.0:0,557,7079
chr22 42525821 rs28371703 G T 3940.9 . AC=2;AF=0.143;AN=14;BaseQRankSum=4.652;DB;DP=1510;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=34.0483;MQ=210.28;MQ0=0;MQRankSum=2.924;QD=7.88;ReadPosRankSum=5.487 GT:AD:DP:GQ:PL 0/0:10,0:10:24.08:0,24,317 0/1:164,85:250:99.0:2033,0,3659 0/1:167,79:249:99.0:1907,0,4271 0/0:249,1:250:99.0:0,565,7321 0/0:249,1:250:99.0:0,545,7102 0/0:248,2:250:99.0:0,536,7254 0/0:249,0:250:99.0:0,605,7633
chr22 42525952 rs71328650 C A 5872.92 . AC=7;AF=0.5;AN=14;BaseQRankSum=25.986;DB;DP=1505;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=144.2979;MQ=173.55;MQ0=0;MQRankSum=3.66;QD=4.68;ReadPosRankSum=7.152 GT:AD:DP:GQ:PL 1/1:2,3:5:6.0:53,6,0 0/1:132,117:250:99.0:1397,0,702 0/0:248,1:250:99.0:0,245,2219 0/1:166,83:250:99.0:1151,0,934 0/1:164,86:250:99.0:1070,0,1147 0/1:170,80:250:99.0:1009,0,1141 0/1:162,87:250:99.0:1194,0,1085
chr22 42526049 . C G 8544.41 . AC=10;AF=0.714;AN=14;BaseQRankSum=-8.121;DP=1505;DS;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=241.7335;MQ=162.18;MQ0=2;MQRankSum=-1.399;QD=6.81;ReadPosRankSum=2.132 GT:AD:DP:GQ:PL 1/1:0,5:5:3.0:26,3,0 0/1:86,162:248:99.0:1053,0,1167 0/0:235,12:248:99.0:0,378,3886 0/1:108,137:245:99.0:782,0,1662 1/1:3,242:245:99.0:2351,264,0 1/1:5,245:250:99.0:2193,222,0 1/1:4,242:246:99.0:2140,240,0
chr22 42526449 . T A 151.47 . AC=1;AF=0.071;AN=14;BaseQRankSum=2.662;DP=1226;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=41.2083;MQ=240.47;MQ0=0;MQRankSum=0.578;QD=4.89;ReadPosRankSum=3.611 GT:AD:DP:GQ:PL 0/1:23,8:31:99.0:190,0,694 0/0:188,0:190:99.0:0,478,5376 0/0:187,0:187:99.0:0,493,5322 0/0:247,0:249:99.0:0,634,6728 0/0:185,0:185:99.0:0,487,5515 0/0:202,0:202:99.0:0,520,5857 0/0:181,1:182:99.0:0,440,5362
chr22 42526484 rs28371699 A C 4220.99 . AC=6;AF=0.429;AN=14;BaseQRankSum=-17.855;DB;DP=1532;DS;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=136.8893;MQ=233.92;MQ0=0;MQRankSum=3.448;QD=3.29;ReadPosRankSum=-2.663 GT:AD:DP:GQ:PL 0/1:16,15:31:99.0:238,0,428 0/1:112,135:247:99.0:796,0,1908 0/0:227,13:241:99.0:0,433,4747 0/1:108,133:242:99.0:588,0,2014 0/1:90,154:245:99.0:1055,0,1892 0/1:112,131:246:99.0:741,0,2222 0/1:108,137:246:99.0:803,0,2266
chr22 42526549 rs56011157 C T 14276.31 . AC=8;AF=0.571;AN=14;BaseQRankSum=17.75;DB;DP=1537;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=87.3394;MQ=231.34;MQ0=0;MQRankSum=4.781;QD=9.29;ReadPosRankSum=7.463 GT:AD:DP:GQ:PL 0/1:22,15:37:99.0:251,0,330 1/1:23,227:250:99.0:5404,430,0 0/1:151,98:250:99.0:1878,0,2475 0/1:153,97:250:99.0:1769,0,2410 0/1:149,100:250:99.0:1792,0,2569 0/1:164,84:250:99.0:1440,0,2646 0/1:149,98:248:99.0:1742,0,2601
chr22 42526561 rs28695233 G T 4524.61 . AC=7;AF=0.5;AN=14;BaseQRankSum=9.714;DB;DP=1538;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=98.8415;MQ=220.45;MQ0=0;MQRankSum=9.43;QD=3.02;ReadPosRankSum=7.682 GT:AD:DP:GQ:PL 0/0:22,15:38:15.74:0,16,609 1/1:4,240:249:99.0:2685,237,0 0/1:142,108:250:99.0:505,0,3133 0/1:138,109:249:99.0:521,0,3281 0/1:150,99:249:99.0:336,0,3601 0/1:153,93:250:99.0:194,0,3695 0/1:148,97:249:99.0:283,0,3093
chr22 42526562 rs75276289 G C 3780.51 . AC=6;AF=0.429;AN=14;BaseQRankSum=15.2;DB;DP=1540;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=116.437;MQ=215.67;MQ0=0;MQRankSum=9.072;QD=2.52;ReadPosRankSum=10.863 GT:AD:DP:GQ:PL 0/0:25,15:40:17.73:0,18,633 0/1:50,199:250:99.0:1522,0,283 0/1:143,106:250:99.0:600,0,2844 0/1:143,107:250:99.0:605,0,3002 0/1:151,99:250:99.0:432,0,3352 0/1:157,93:250:99.0:254,0,3483 0/1:149,99:248:99.0:368,0,2999
chr22 42526567 rs76312385 G A 434.33 . AC=1;AF=0.071;AN=14;BaseQRankSum=18.089;DB;DP=1540;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=89.3746;MQ=219.8;MQ0=0;MQRankSum=6.196;QD=1.74;ReadPosRankSum=7.564 GT:AD:DP:GQ:PL 0/0:22,18:40:4.68:0,5,427 0/1:34,215:250:56.26:473,0,56 0/0:142,108:250:20.78:0,21,2288 0/0:142,108:250:49.48:0,49,2451 0/0:152,97:250:99.0:0,210,2801 0/0:150,100:250:34.96:0,35,2515 0/0:148,102:250:77.19:0,77,2590
chr22 42526571 rs74644586 C G 339.6 . AC=1;AF=0.071;AN=14;BaseQRankSum=-11.48;DB;DP=1540;DS;Dels=0.02;FS=0.0;HRun=4;HaplotypeScore=93.3402;MQ=218.52;MQ0=0;MQRankSum=3.709;QD=1.36;ReadPosRankSum=6.322 GT:AD:DP:GQ:PL 0/0:22,18:40:36.46:0,36,689 0/1:4,232:239:30.49:378,0,30 0/0:138,110:249:99.0:0,295,4017 0/0:137,111:249:99.0:0,250,4041 0/0:147,97:245:99.0:0,321,4348 0/0:150,97:247:99.0:0,358,4657 0/0:144,101:247:99.0:0,275,4123
chr22 42526573 rs1080996 T G 12579.34 . AC=8;AF=0.571;AN=14;BaseQRankSum=6.163;DB;DP=1540;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=76.655;MQ=224.49;MQ0=0;MQRankSum=1.355;QD=8.17;ReadPosRankSum=5.794 GT:AD:DP:GQ:PL 0/1:22,18:40:99.0:200,0,668 1/1:4,244:248:99.0:5175,439,0 0/1:136,110:250:99.0:1862,0,3521 0/1:136,113:249:99.0:1734,0,3677 0/1:144,99:250:99.0:1119,0,3818 0/1:150,99:250:99.0:1196,0,4178 0/1:145,104:250:99.0:1293,0,3628
chr22 42526580 rs1080995 G C 16619.47 . AC=8;AF=0.571;AN=14;BaseQRankSum=7.991;DB;DP=1541;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=56.1489;MQ=221.29;MQ0=0;MQRankSum=2.223;QD=10.78;ReadPosRankSum=4.443 GT:AD:DP:GQ:PL 0/1:22,19:41:99.0:335,0,664 1/1:15,234:250:99.0:5895,337,0 0/1:137,113:250:99.0:2421,0,3301 0/1:134,116:250:99.0:2262,0,3430 0/1:144,105:250:99.0:1929,0,3421 0/1:148,101:250:99.0:1778,0,3867 0/1:142,108:250:99.0:1999,0,3334
chr22 42526634 . T C 32.6 . AC=1;AF=0.071;AN=14;BaseQRankSum=1.147;DP=1225;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=50.0151;MQ=240.65;MQ0=0;MQRankSum=1.151;QD=1.3;ReadPosRankSum=1.276 GT:AD:DP:GQ:PL 0/1:21,4:25:71.04:71,0,702 0/0:187,2:189:99.0:0,481,6080 0/0:233,0:233:99.0:0,667,7351 0/0:230,0:230:99.0:0,667,7394 0/0:174,1:175:99.0:0,446,5469 0/0:194,2:196:99.0:0,498,6239 0/0:174,0:175:99.0:0,511,5894
chr22 42526679 . G C 60.6 . AC=1;AF=0.071;AN=14;BaseQRankSum=-12.425;DP=1525;DS;Dels=0.09;FS=0.0;HRun=1;HaplotypeScore=331.3182;MQ=215.48;MQ0=0;MQRankSum=-14.68;QD=0.24;ReadPosRankSum=-13.323 GT:AD:DP:GQ:PL 0/0:23,0:23:66.17:0,66,829 0/1:175,56:232:99.0:99,0,4273 0/0:199,26:226:76.45:0,76,5104 0/0:196,37:233:41.98:0,42,5109 0/0:170,47:218:99.0:0,162,4505 0/0:188,36:224:99.0:0,230,4974 0/0:177,47:225:99.0:0,167,4592
chr22 42526694 rs1065852 G A 4420.63 . AC=2;AF=0.143;AN=14;BaseQRankSum=8.566;DB;DP=1529;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=117.6833;MQ=214.96;MQ0=0;MQRankSum=5.852;QD=8.84;ReadPosRankSum=1.454 GT:AD:DP:GQ:PL 0/0:29,0:29:81.24:0,81,1040 0/1:136,114:250:99.0:2333,0,3170 0/1:145,104:250:99.0:2087,0,2794 0/0:250,0:250:99.0:0,586,6963 0/0:247,2:250:99.0:0,497,6185 0/0:248,2:250:99.0:0,544,6640 0/0:250,0:250:99.0:0,571,6444
chr22 42527471 rs28633410 T C 26831.16 . AC=10;AF=0.833;AN=12;BaseQRankSum=-1.092;DB;DP=1501;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=79.3853;MQ=176.86;MQ0=0;MQRankSum=-2.644;QD=17.89;ReadPosRankSum=2.185 GT:AD:DP:GQ:PL ./.:.:.:.:. 1/1:1,249:250:99.0:5741,478,0 0/1:102,148:250:99.0:3026,0,1748 0/1:115,132:250:99.0:2716,0,1896 1/1:1,249:250:99.0:5040,392,0 1/1:1,248:250:99.0:5109,427,0 1/1:4,245:249:99.0:5199,306,0
chr22 42527533 rs28624811 A G 13619.46 . AC=7;AF=0.583;AN=12;BaseQRankSum=-8.893;DB;DP=1501;DS;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=86.1948;MQ=179.18;MQ0=0;MQRankSum=0.472;QD=9.08;ReadPosRankSum=0.778 GT:AD:DP:GQ:PL ./.:.:.:.:. 1/1:2,241:243:99.0:4171,416,0 0/1:113,132:245:99.0:2000,0,2018 0/1:120,126:246:99.0:1781,0,1970 0/1:131,118:249:99.0:1885,0,1784 0/1:122,126:248:99.0:1893,0,1807 0/1:122,127:249:99.0:1890,0,2119
chr22 42527793 rs1080989 C T 3454.66 . AC=2;AF=0.167;AN=12;BaseQRankSum=-3.007;DB;DP=1074;DS;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=75.7865;MQ=209.0;MQ0=0;MQRankSum=3.014;QD=9.36;ReadPosRankSum=0.618 GT:AD:DP:GQ:PL ./.:.:.:.:. 0/1:72,90:162:99.0:1699,0,1767 0/1:103,96:202:99.0:1756,0,2532 0/0:188,0:188:99.0:0,526,5889 0/0:160,0:160:99.0:0,457,4983 0/0:197,0:198:99.0:0,544,6100 0/0:156,0:156:99.0:0,439,5041
chr22 42527891 . T A 109.83 . AC=5;AF=0.417;AN=12;BaseQRankSum=11.235;DP=1500;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=638.4601;MQ=166.82;MQ0=0;MQRankSum=1.444;QD=0.09;ReadPosRankSum=0.839 GT:AD:DP:GQ:PL ./.:.:.:.:. 0/1:238,7:248:13.7:14,0,38 0/0:246,3:250:5.97:0,6,45 0/1:239,11:250:31.42:31,0,54 0/1:232,16:250:49.09:49,0,76 0/1:233,14:249:52.1:52,0,53 0/1:238,11:250:12.71:13,0,36
/usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/gatk.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testWrite (vcf.test.test_vcf.TestBcfToolsOutputWriter) ...
##fileformat=VCFv4.1
##samtoolsVersion=0.1.18 (r982:295)
##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
##INFO=<ID=MQ,Number=1,Type=Integer,Description="Root-mean-square mapping quality of covering reads">
##INFO=<ID=FQ,Number=1,Type=Float,Description="Phred probability of all samples being the same">
##INFO=<ID=AF1,Number=1,Type=Float,Description="Max-likelihood estimate of the first ALT allele frequency (assuming HWE)">
##INFO=<ID=AC1,Number=1,Type=Float,Description="Max-likelihood estimate of the first ALT allele count (no HWE assumption)">
##INFO=<ID=G3,Number=3,Type=Float,Description="ML estimate of genotype frequencies">
##INFO=<ID=HWE,Number=1,Type=Float,Description="Chi^2 based HWE test P-value based on G3">
##INFO=<ID=CLR,Number=1,Type=Integer,Description="Log ratio of genotype likelihoods with and without the constraint">
##INFO=<ID=UGT,Number=1,Type=String,Description="The most probable unconstrained genotype configuration in the trio">
##INFO=<ID=CGT,Number=1,Type=String,Description="The most probable constrained genotype configuration in the trio">
##INFO=<ID=PV4,Number=4,Type=Float,Description="P-values for strand bias, baseQ bias, mapQ bias and tail distance bias">
##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
##INFO=<ID=PC2,Number=2,Type=Integer,Description="Phred probability of the nonRef allele frequency in group1 samples being larger (,smaller) than in group2.">
##INFO=<ID=PCHI2,Number=1,Type=Float,Description="Posterior weighted chi^2 P-value for testing the association between group1 and group2 samples.">
##INFO=<ID=QCHI2,Number=1,Type=Integer,Description="Phred scaled PCHI2.">
##INFO=<ID=PR,Number=1,Type=Integer,Description="# permutations yielding a smaller PCHI2.">
##INFO=<ID=VDB,Number=1,Type=Float,Description="Variant Distance Bias">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GL,Number=3,Type=Float,Description="Likelihoods for RR,RA,AA genotypes (R=ref,A=alt)">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="# high-quality bases">
##FORMAT=<ID=SP,Number=1,Type=Integer,Description="Phred-scaled strand bias P-value">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT sample
MT 1 . G . 283 . DP=245;DP4=240,0,0,0;MQ=30;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 2 . A . 283 . DP=250;DP4=247,0,0,0;MQ=31;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 3 . T . 283 . DP=253;DP4=252,0,0,0;MQ=31;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 4 . C . 283 . DP=257;DP4=253,0,0,0;MQ=32;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 5 . A . 283 . DP=263;DP4=258,0,0,0;MQ=32;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 6 . C . 283 . DP=268;DP4=259,0,0,0;MQ=33;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 7 . A . 283 . DP=272;DP4=265,0,2,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.9e-05,0.32,1.0;VDB=0.0111 PL 0
MT 8 . G . 283 . DP=275;DP4=272,0,0,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 9 . G . 283 . DP=276;DP4=266,0,1,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.006,0.36,0.13 PL 0
MT 10 . T . 283 . DP=277;DP4=269,0,1,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.7e-05,0.36,1.0;VDB=0.0 PL 0
MT 11 . C . 283 . DP=279;DP4=274,0,1,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0031,0.36,0.12 PL 0
MT 12 . T . 283 . DP=286;DP4=284,0,0,0;MQ=35;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 13 . A . 283 . DP=289;DP4=281,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 14 . T . 283 . DP=290;DP4=288,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 15 . C . 283 . DP=290;DP4=280,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 16 . A . 283 . DP=293;DP4=290,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 17 . C . 283 . DP=297;DP4=290,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0111 PL 0
MT 18 . C . 283 . DP=298;DP4=284,0,0,0;MQ=37;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 19 . C . 283 . DP=301;DP4=293,0,1,0;MQ=37;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.0,0.32,0.38;VDB=0.0111 PL 0
MT 20 . T . 283 . DP=311;DP4=307,0,0,0;MQ=37;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 21 . A . 283 . DP=311;DP4=305,0,0,0;MQ=38;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 22 . T . 283 . DP=305;DP4=303,0,0,0;MQ=38;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 23 . T . 283 . DP=309;DP4=305,0,0,0;MQ=38;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 24 . A . 283 . DP=309;DP4=301,0,0,0;MQ=39;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 25 . A . 283 . DP=308;DP4=302,0,1,0;MQ=39;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.2e-09,0.28,1.0 PL 0
MT 26 . C . 283 . DP=309;DP4=302,0,0,0;MQ=39;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 27 . C . 283 . DP=307;DP4=293,0,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 28 . A . 283 . DP=309;DP4=305,0,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 29 . C . 283 . DP=308;DP4=302,0,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 30 . T . 283 . DP=305;DP4=303,0,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 31 . C . 283 . DP=302;DP4=293,0,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 32 . A . 283 . DP=303;DP4=294,0,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 33 . C . 283 . DP=300;DP4=287,0,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 34 . G . 280 . DP=296;DP4=288,0,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 35 . G . 283 . DP=296;DP4=280,0,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0111 PL 0
MT 36 . G . 283 . DP=291;DP4=272,0,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 37 . A . 283 . DP=290;DP4=276,0,1,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00038,0.22,1.0;VDB=0.0212 PL 0
MT 38 . G . 283 . DP=288;DP4=282,0,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 39 . C . 283 . DP=289;DP4=264,0,2,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.3e-11,1.0,1.0;VDB=0.004 PL 0
MT 40 . T . 283 . DP=288;DP4=285,0,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 41 . C . 283 . DP=284;DP4=276,0,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 42 . T . 283 . DP=279;DP4=277,0,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 43 . C . 283 . DP=279;DP4=268,0,0,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 44 . C . 283 . DP=280;DP4=265,0,1,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0064,0.17,1.0 PL 0
MT 45 . A . 283 . DP=279;DP4=272,0,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 46 . T . 283 . DP=279;DP4=276,0,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 47 . G . 283 . DP=280;DP4=277,0,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 48 . C . 283 . DP=281;DP4=271,0,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 49 . A . 283 . DP=278;DP4=272,0,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0051 PL 0
MT 50 . T . 283 . DP=276;DP4=274,0,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 51 . T . 283 . DP=271;DP4=261,0,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 52 . T . 283 . DP=271;DP4=262,0,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 53 . G . 283 . DP=273;DP4=271,0,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 54 . G . 283 . DP=274;DP4=264,0,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 55 . T . 283 . DP=271;DP4=268,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 56 . A . 283 . DP=274;DP4=266,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 57 . T . 283 . DP=272;DP4=270,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 58 . T . 283 . DP=273;DP4=266,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 59 . T . 283 . DP=277;DP4=272,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 60 . T . 283 . DP=279;DP4=272,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 61 . C . 283 . DP=285;DP4=275,0,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 62 . G . 283 . DP=285;DP4=278,0,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-08,0.097,0.066 PL 0
MT 63 . T . 283 . DP=285;DP4=285,0,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 64 . C . 283 . DP=283;DP4=276,0,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 65 . T . 283 . DP=277;DP4=277,0,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 66 . G . 283 . DP=276;DP4=274,0,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 67 . G . 283 . DP=275;DP4=264,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 68 . G . 283 . DP=281;DP4=265,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 69 . G . 283 . DP=288;DP4=269,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 70 . G . 283 . DP=296;DP4=275,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 71 . G . 283 . DP=300;DP4=272,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 72 . T . 283 . DP=301;DP4=285,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0
MT 73 . A . 283 . DP=295;DP4=283,0,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0066,1.0,1.0 PL 0
MT 74 . T . 283 . DP=298;DP4=298,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 75 . G . 283 . DP=300;DP4=299,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 76 . C . 283 . DP=304;DP4=281,0,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.3e-13,1.0,1.0;VDB=0.0342 PL 0
MT 77 . A . 283 . DP=303;DP4=293,0,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00064,0.019,0.25;VDB=0.02 PL 0
MT 78 . C . 283 . DP=302;DP4=283,0,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.1e-13,0.21,0.36;VDB=0.0026 PL 0
MT 79 . G . 283 . DP=301;DP4=285,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 80 . C . 283 . DP=308;DP4=286,0,1,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.8e-07,0.0098,0.14;VDB=0.0217 PL 0
MT 81 . G . 282 . DP=314;DP4=302,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 82 . A . 283 . DP=313;DP4=296,0,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.013,0.069,0.1;VDB=0.0049 PL 0
MT 83 . T . 283 . DP=316;DP4=313,0,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0029,1.0,1.0;VDB=0.02 PL 0
MT 84 . A . 283 . DP=316;DP4=302,0,1,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-05,0.0044,1.0 PL 0
MT 85 . G . 283 . DP=314;DP4=314,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 86 . C . 283 . DP=318;DP4=297,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0198 PL 0
MT 87 . A . 283 . DP=324;DP4=316,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 88 . T . 283 . DP=326;DP4=325,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 89 . T . 283 . DP=328;DP4=313,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-08,1.0,0.064 PL 0
MT 90 . G . 283 . DP=329;DP4=326,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0193 PL 0
MT 91 . C . 283 . DP=328;DP4=310,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.2e-05,1.0,0.37 PL 0
MT 92 . G . 278 . DP=327;DP4=314,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.17,1.0,0.2;VDB=0.0237 PL 0
MT 93 . A . 283 . DP=328;DP4=310,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 94 . G . 283 . DP=327;DP4=327,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 95 . A . 283 . DP=323;DP4=308,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.8e-05,0.002,1.0 PL 0
MT 96 . C . 283 . DP=323;DP4=305,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.17,1.0,1.0 PL 0
MT 97 . G . 275 . DP=321;DP4=311,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 98 . C . 283 . DP=322;DP4=301,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0006 PL 0
MT 99 . T . 283 . DP=327;DP4=327,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 100 . G . 283 . DP=332;DP4=332,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 101 . G . 283 . DP=332;DP4=306,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 102 . A . 283 . DP=331;DP4=290,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.005 PL 0
MT 103 . G . 283 . DP=329;DP4=321,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0342 PL 0
MT 104 . C . 283 . DP=330;DP4=273,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0026,1.0,0.047;VDB=0.0003 PL 0
MT 105 . C . 283 . DP=338;DP4=302,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 106 . G . 283 . DP=343;DP4=314,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 107 . G . 283 . DP=344;DP4=300,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 108 . A . 283 . DP=347;DP4=305,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0302 PL 0
MT 109 . G . 283 . DP=348;DP4=344,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 110 . C . 283 . DP=341;DP4=279,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.4e-06,1.4e-08,1.0;VDB=0.0445 PL 0
MT 111 . A . 283 . DP=343;DP4=321,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0233 PL 0
MT 112 . C . 283 . DP=348;DP4=300,0,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.2e-08,7.4e-07,0.16;VDB=0.0169 PL 0
MT 113 . C . 283 . DP=350;DP4=307,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.8e-08,1.0,0.38;VDB=0.0252 PL 0
MT 114 . C . 283 . DP=351;DP4=307,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 115 . T . 283 . DP=351;DP4=346,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0025 PL 0
MT 116 . A . 283 . DP=352;DP4=317,0,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.3e-07,0.0073,0.45;VDB=0.0183 PL 0
MT 117 . T . 283 . DP=355;DP4=351,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0025 PL 0
MT 118 . G . 283 . DP=352;DP4=348,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0306 PL 0
MT 119 . T . 283 . DP=353;DP4=345,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.005,1.0,1.0;VDB=0.0335 PL 0
MT 120 . C . 283 . DP=354;DP4=331,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00033,1.0,0.14;VDB=0.044 PL 0
MT 121 . G . 283 . DP=356;DP4=311,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 122 . C . 283 . DP=353;DP4=304,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0064,1.0,0.29;VDB=0.0237 PL 0
MT 123 . A . 283 . DP=357;DP4=332,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0141 PL 0
MT 124 . G . 283 . DP=357;DP4=353,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 125 . T . 283 . DP=359;DP4=347,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0037,1.0,1.0;VDB=0.0302 PL 0
MT 126 . A . 283 . DP=360;DP4=327,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00072,0.0069,0.13;VDB=0.0215 PL 0
MT 127 . T . 283 . DP=358;DP4=355,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.7e-05,5e-08,0.14;VDB=0.0245 PL 0
MT 128 . C . 283 . DP=360;DP4=336,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0335 PL 0
MT 129 . T . 283 . DP=360;DP4=356,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00053,0.0013,1.0 PL 0
MT 130 . G . 283 . DP=357;DP4=355,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0141 PL 0
MT 131 . T . 283 . DP=360;DP4=351,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0057 PL 0
MT 132 . C . 283 . DP=359;DP4=338,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0
MT 133 . T . 283 . DP=358;DP4=353,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00063,0.0012,1.0;VDB=0.0033 PL 0
MT 134 . T . 283 . DP=357;DP4=326,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 135 . T . 283 . DP=356;DP4=322,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 136 . G . 283 . DP=358;DP4=353,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 137 . A . 283 . DP=358;DP4=317,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0044 PL 0
MT 138 . T . 283 . DP=358;DP4=355,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.025 PL 0
MT 139 . T . 283 . DP=360;DP4=328,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 140 . C . 283 . DP=356;DP4=338,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0065,2.6e-06,0.23;VDB=0.0367 PL 0
MT 141 . C . 283 . DP=360;DP4=321,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.012,1.0,0.13 PL 0
MT 142 . T . 283 . DP=362;DP4=357,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0342 PL 0
MT 143 . G . 283 . DP=360;DP4=353,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0017,1.0,0.18;VDB=0.0183 PL 0
MT 144 . C . 283 . DP=364;DP4=325,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0101 PL 0
MT 145 . C . 283 . DP=363;DP4=330,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0063 PL 0
MT 146 . T . 283 . DP=361;DP4=358,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0207 PL 0
MT 147 . C . 283 . DP=362;DP4=357,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 148 . A . 283 . DP=363;DP4=347,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0051 PL 0
MT 149 . T . 283 . DP=363;DP4=363,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 150 . C . 283 . DP=363;DP4=350,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0168 PL 0
MT 151 . C . 283 . DP=359;DP4=337,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.7e-05,1.0,0.077 PL 0
MT 152 . T . 283 . DP=355;DP4=352,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.028,1.0,1.0;VDB=0.0237 PL 0
MT 153 . A . 283 . DP=354;DP4=327,0,5,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.001,0.15,0.009;VDB=0.0115 PL 0
MT 154 . T . 283 . DP=353;DP4=349,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0051 PL 0
MT 155 . T . 283 . DP=357;DP4=343,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 156 . A . 283 . DP=357;DP4=337,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.021 PL 0
MT 157 . T . 283 . DP=356;DP4=355,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 158 . T . 283 . DP=351;DP4=333,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 159 . T . 283 . DP=343;DP4=321,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 160 . A . 283 . DP=337;DP4=313,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 161 . T . 283 . DP=336;DP4=334,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,7.6e-06,1.0,1.0 PL 0
MT 162 . C . 283 . DP=333;DP4=314,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0245 PL 0
MT 163 . G . 278 . DP=328;DP4=308,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.02 PL 0
MT 164 . C . 283 . DP=328;DP4=306,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0212 PL 0
MT 165 . A . 283 . DP=330;DP4=319,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0026,1.0,0.18;VDB=0.0167 PL 0
MT 166 . C . 283 . DP=332;DP4=308,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.6e-07,1.0,1.0;VDB=0.0134 PL 0
MT 167 . C . 283 . DP=330;DP4=310,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3e-05,1.0,1.0 PL 0
MT 168 . T . 283 . DP=329;DP4=329,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 169 . A . 283 . DP=332;DP4=314,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 170 . C . 283 . DP=327;DP4=307,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0013,1.0,1.0;VDB=0.0144 PL 0
MT 171 . G . 283 . DP=326;DP4=315,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 172 . T . 283 . DP=325;DP4=323,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0086 PL 0
MT 173 . T . 283 . DP=324;DP4=311,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 174 . C . 283 . DP=321;DP4=307,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.4e-06,1.0,0.32;VDB=0.0227 PL 0
MT 175 . A . 283 . DP=323;DP4=312,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0183 PL 0
MT 176 . A . 283 . DP=320;DP4=306,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00011,1.0,1.0 PL 0
MT 177 . T . 283 . DP=317;DP4=317,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 178 . A . 283 . DP=321;DP4=313,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 179 . T . 283 . DP=322;DP4=322,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 180 . T . 283 . DP=324;DP4=307,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 181 . A . 283 . DP=323;DP4=311,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 182 . C . 283 . DP=323;DP4=302,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.12,1.7e-06,1.0;VDB=0.016 PL 0
MT 183 . A . 283 . DP=326;DP4=318,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0096 PL 0
MT 184 . G . 283 . DP=328;DP4=325,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1e-05,1.0,0.37;VDB=0.0128 PL 0
MT 185 . G . 283 . DP=328;DP4=298,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.8e-06,1.0,1.0 PL 0
MT 186 . C . 283 . DP=324;DP4=295,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0238 PL 0
MT 187 . G . 283 . DP=325;DP4=305,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 188 . A . 283 . DP=326;DP4=301,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0032,1.0,1.0;VDB=0.0335 PL 0
MT 189 . A . 283 . DP=324;DP4=300,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 190 . C . 283 . DP=322;DP4=298,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.9e-06,7.9e-07,1.0;VDB=0.0192 PL 0
MT 191 . A . 283 . DP=324;DP4=313,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0009 PL 0
MT 192 . T . 283 . DP=321;DP4=320,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 193 . A . 283 . DP=329;DP4=307,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.003,1.0,0.11;VDB=0.0299 PL 0
MT 194 . C . 283 . DP=332;DP4=301,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3e-05,1.0,0.071;VDB=0.0429 PL 0
MT 195 . T . 283 . DP=329;DP4=327,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0121 PL 0
MT 196 . T . 283 . DP=326;DP4=308,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 197 . A . 283 . DP=328;DP4=311,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 198 . C . 283 . DP=329;DP4=310,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.3e-05,1.0,0.25;VDB=0.0187 PL 0
MT 199 . T . 283 . DP=329;DP4=327,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 200 . A . 283 . DP=333;DP4=321,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.022 PL 0
MT 201 . A . 283 . DP=331;DP4=315,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 202 . A . 283 . DP=332;DP4=311,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 203 . G . 283 . DP=327;DP4=324,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0021,1.0,0.093;VDB=0.0123 PL 0
MT 204 . T . 283 . DP=326;DP4=318,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.1e-05,9.1e-07,0.23;VDB=0.0025 PL 0
MT 205 . G . 283 . DP=329;DP4=326,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 206 . T . 283 . DP=331;DP4=322,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00013,2.1e-07,0.23;VDB=0.0044 PL 0
MT 207 . G . 283 . DP=333;DP4=330,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 208 . T . 283 . DP=332;DP4=332,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 209 . T . 283 . DP=332;DP4=318,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 210 . A . 283 . DP=332;DP4=319,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.9e-05,2.5e-06,1.0 PL 0
MT 211 . A . 283 . DP=334;DP4=324,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 212 . T . 283 . DP=335;DP4=335,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 213 . T . 283 . DP=335;DP4=325,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 214 . A . 283 . DP=338;DP4=330,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 215 . A . 283 . DP=333;DP4=323,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 216 . T . 283 . DP=331;DP4=331,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 217 . T . 283 . DP=332;DP4=324,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 218 . A . 283 . DP=332;DP4=327,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.1e-12,0.00014,0.25;VDB=0.0072 PL 0
MT 219 . A . 283 . DP=331;DP4=324,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 220 . T . 283 . DP=331;DP4=330,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.3e-07,0.00018,0.4 PL 0
MT 221 . G . 283 . DP=330;DP4=328,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 222 . C . 283 . DP=333;DP4=320,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0248 PL 0
MT 223 . T . 283 . DP=329;DP4=327,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0198 PL 0
MT 224 . T . 283 . DP=328;DP4=320,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 225 . G . 283 . DP=331;DP4=330,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 226 . T . 283 . DP=329;DP4=327,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 227 . A . 283 . DP=324;DP4=316,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 228 . G . 283 . DP=321;DP4=320,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2e-06,0.00026,1.0 PL 0
MT 229 . G . 283 . DP=318;DP4=304,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 230 . A . 283 . DP=320;DP4=311,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 231 . C . 283 . DP=319;DP4=309,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 232 . A . 283 . DP=317;DP4=309,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 233 . T . 283 . DP=319;DP4=319,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 234 . A . 283 . DP=314;DP4=308,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 235 . A . 283 . DP=314;DP4=307,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 236 . T . 283 . DP=318;DP4=317,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.1e-10,1.0,0.44 PL 0
MT 237 . A . 283 . DP=320;DP4=313,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00077,1.0,0.1;VDB=0.0168 PL 0
MT 238 . A . 283 . DP=318;DP4=313,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 239 . T . 283 . DP=316;DP4=316,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 240 . A . 283 . DP=315;DP4=310,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 241 . A . 283 . DP=314;DP4=309,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.036,1.0,1.0;VDB=0.016 PL 0
MT 242 . C . 283 . DP=314;DP4=305,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0183 PL 0
MT 243 . A . 283 . DP=316;DP4=313,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 244 . A . 283 . DP=320;DP4=314,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 245 . T . 283 . DP=316;DP4=316,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 246 . T . 283 . DP=319;DP4=311,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 247 . G . 283 . DP=323;DP4=322,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 248 . A . 283 . DP=327;DP4=320,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 249 . A . 283 . DP=328;DP4=318,0,1,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.7e-07,0.00026,1.0 PL 0
MT 250 . T . 283 . DP=326;DP4=324,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 251 . G . 283 . DP=323;DP4=323,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 252 . T . 283 . DP=324;DP4=322,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0217 PL 0
MT 253 . C . 283 . DP=328;DP4=322,0,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.7e-05,1.0,0.41;VDB=0.0158 PL 0
MT 254 . T . 283 . DP=324;DP4=324,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 255 . G . 283 . DP=319;DP4=318,0,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.7e-08,1.0,0.033 PL 0
MT 256 . C . 283 . DP=312;DP4=303,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 257 . A . 283 . DP=312;DP4=307,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 258 . C . 283 . DP=313;DP4=303,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 259 . A . 283 . DP=312;DP4=300,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0069 PL 0
MT 260 . G . 283 . DP=309;DP4=307,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 261 . C . 283 . DP=303;DP4=290,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 262 . C . 283 . DP=303;DP4=286,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 263 . A G 210 . DP=302;DP4=0,0,289,0;MQ=56;FQ=-282.0;AF1=1.0;AC1=2.0;VDB=0.0417 GT:PL:GQ 1/1:243,255,0:99
MT 264 . C . 283 . DP=309;DP4=290,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.018 PL 0
MT 265 . T . 283 . DP=311;DP4=310,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 266 . T . 283 . DP=311;DP4=298,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 267 . T . 283 . DP=310;DP4=293,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 268 . C . 283 . DP=308;DP4=298,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0214 PL 0
MT 269 . C . 283 . DP=307;DP4=293,0,2,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.4e-10,1.0,0.1;VDB=0.0183 PL 0
MT 270 . A . 283 . DP=306;DP4=300,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 271 . C . 283 . DP=307;DP4=298,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 272 . A . 283 . DP=308;DP4=300,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 273 . C . 283 . DP=306;DP4=296,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 274 . A . 283 . DP=303;DP4=294,0,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0016,0.05,1.0 PL 0
MT 275 . G . 283 . DP=308;DP4=306,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 276 . A . 283 . DP=308;DP4=289,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0253 PL 0
MT 277 . C . 283 . DP=307;DP4=291,0,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.04,1.0,0.18;VDB=0.0163 PL 0
MT 278 . A . 283 . DP=305;DP4=295,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0144 PL 0
MT 279 . T . 283 . DP=303;DP4=303,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 280 . C . 283 . DP=300;DP4=296,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 281 . A . 283 . DP=298;DP4=294,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 282 . T . 283 . DP=298;DP4=298,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 283 . A . 283 . DP=292;DP4=281,0,2,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.5e-06,0.094,0.37;VDB=0.0183 PL 0
MT 284 . A . 283 . DP=287;DP4=278,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 285 . C . 283 . DP=283;DP4=278,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0121 PL 0
MT 286 . A . 283 . DP=279;DP4=274,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 287 . A . 283 . DP=273;DP4=265,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 288 . A . 283 . DP=270;DP4=260,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 289 . A . 283 . DP=267;DP4=252,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0106 PL 0
MT 290 . A . 283 . DP=261;DP4=250,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0133 PL 0
MT 291 . A . 283 . DP=259;DP4=247,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 292 . T . 283 . DP=255;DP4=255,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 293 . T . 283 . DP=259;DP4=246,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 294 . T . 283 . DP=257;DP4=245,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 295 . C . 283 . DP=254;DP4=246,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 296 . C . 283 . DP=253;DP4=234,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 297 . A . 283 . DP=253;DP4=244,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0099 PL 0
MT 298 . C . 283 . DP=253;DP4=236,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0168 PL 0
MT 299 . C . 283 . DP=251;DP4=229,0,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0068,1.0,1.0 PL 0
MT 300 . A . 283 . DP=249;DP4=237,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 301 . A . 283 . DP=248;DP4=223,0,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-05,0.058,0.12;VDB=0.0369 PL 0
MT 302 . A . 283 . DP=248;DP4=221,0,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.3e-05,0.057,0.14;VDB=0.0227 PL 0
MT 302 . ACCCCCCC . 84.6 . DP=248;DP4=26,0,2,0;MQ=47;FQ=-88.5;AF1=0.0;AC1=0.0;PV4=1.0,1.0,1.0,0.21;INDEL;VDB=0.0435 PL 0
MT 303 . C . 283 . DP=244;DP4=205,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 304 . C . 283 . DP=242;DP4=197,0,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0027,0.0048,1.0;VDB=0.01 PL 0
MT 304 . C . 85.5 . DP=242;DP4=59,0,1,0;MQ=53;FQ=-197.0;AF1=0.0;AC1=0.0;PV4=1.0,0.22,1.0,1.0;INDEL;VDB=0.0435 PL 0
MT 305 . C . 283 . DP=250;DP4=193,0,2,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00014,1.0,0.3;VDB=0.0158 PL 0
MT 306 . C . 283 . DP=252;DP4=194,0,2,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00023,1.0,0.11;VDB=0.0111 PL 0
MT 307 . C . 283 . DP=252;DP4=190,0,3,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2e-06,0.0019,0.34;VDB=0.0284 PL 0
MT 308 . C . 283 . DP=255;DP4=175,0,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.9e-06,1.0,0.11;VDB=0.009 PL 0
MT 309 . C . 283 . DP=257;DP4=176,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0001 PL 0
MT 310 . T . 283 . DP=260;DP4=204,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0268 PL 0
MT 311 . C . 105 . DP=265;DP4=25,0,0,0;MQ=53;FQ=-102.0;AF1=0.0;AC1=0.0;VDB=0.0195 PL 0
MT 312 . C . 102 . DP=271;DP4=23,1,0,0;MQ=58;FQ=-99.0;AF1=0.0;AC1=0.0 PL 0
MT 313 . C . 132 . DP=282;DP4=33,1,0,0;MQ=59;FQ=-129.0;AF1=0.0;AC1=0.0 PL 0
MT 314 . C . 138 . DP=280;DP4=35,1,0,0;MQ=58;FQ=-135.0;AF1=0.0;AC1=0.0 PL 0
MT 315 . C . 147 . DP=281;DP4=38,1,0,0;MQ=58;FQ=-144.0;AF1=0.0;AC1=0.0 PL 0
MT 316 . G . 255 . DP=270;DP4=199,1,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0058,0.075,1.0;VDB=0.0233 PL 0
MT 317 . C . 283 . DP=278;DP4=221,2,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0227 PL 0
MT 318 . T . 283 . DP=286;DP4=267,2,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0
MT 319 . T . 283 . DP=287;DP4=236,2,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.5e-08,0.011,0.33;VDB=0.0449 PL 0
MT 320 . C . 283 . DP=288;DP4=263,3,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0233 PL 0
MT 321 . T . 283 . DP=289;DP4=270,3,1,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.029,0.00028,0.12,0.0089;VDB=0.0302 PL 0
MT 322 . G . 283 . DP=290;DP4=258,4,4,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.5e-05,1.4e-06,1.0;VDB=0.0093 PL 0
MT 323 . G . 283 . DP=291;DP4=212,5,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0081 PL 0
MT 324 . C . 283 . DP=292;DP4=231,5,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0031,1.0,0.26;VDB=0.0099 PL 0
MT 325 . C . 283 . DP=295;DP4=236,10,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.7e-06,2.3e-05,0.47;VDB=0.0128 PL 0
MT 326 . A . 283 . DP=298;DP4=257,14,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0039,1.0,1.0;VDB=0.0449 PL 0
MT 327 . C . 283 . DP=307;DP4=238,18,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00016,0.077,0.41;VDB=0.0302 PL 0
MT 328 . A . 283 . DP=311;DP4=258,19,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.023,1.0,1.0;VDB=0.0115 PL 0
MT 329 . G . 283 . DP=316;DP4=279,16,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00045,0.017,1.0;VDB=0.0335 PL 0
MT 330 . C . 283 . DP=322;DP4=237,22,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0115 PL 0
MT 331 . A . 283 . DP=332;DP4=268,25,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0302 PL 0
MT 332 . C . 283 . DP=337;DP4=257,28,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00057,0.00021,0.22;VDB=0.0104 PL 0
MT 333 . T . 283 . DP=339;DP4=305,24,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0005 PL 0
MT 334 . T . 283 . DP=349;DP4=275,31,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0106 PL 0
MT 335 . A . 283 . DP=356;DP4=283,32,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.037,0.014,1.0;VDB=0.0057 PL 0
MT 336 . A . 283 . DP=361;DP4=279,34,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 337 . A . 283 . DP=359;DP4=278,40,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.16,1.0,0.093;VDB=0.0022 PL 0
MT 338 . C . 283 . DP=359;DP4=267,41,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.1e-06,1.0,1.0;VDB=0.0302 PL 0
MT 339 . A . 283 . DP=365;DP4=295,45,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0242 PL 0
MT 340 . C . 283 . DP=372;DP4=284,51,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00047,0.025,1.0;VDB=0.0169 PL 0
MT 341 . A . 283 . DP=378;DP4=299,54,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0325 PL 0
MT 342 . T . 283 . DP=385;DP4=321,47,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0324 PL 0
MT 343 . C . 283 . DP=387;DP4=298,62,2,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.5e-06,1.0,0.48;VDB=0.0169 PL 0
MT 344 . T . 283 . DP=392;DP4=319,49,1,1;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.25,6.8e-05,0.16,1.0;VDB=0.0394 PL 0
MT 345 . C . 283 . DP=403;DP4=314,70,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 346 . T . 283 . DP=412;DP4=335,70,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0124 PL 0
MT 347 . G . 283 . DP=418;DP4=290,71,5,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.59,6.4e-09,0.002,1.0;VDB=0.0335 PL 0
MT 348 . C . 283 . DP=429;DP4=300,80,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0017,1.0,0.19 PL 0
MT 349 . C . 283 . DP=441;DP4=312,87,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.7e-05,0.043,1.0;VDB=0.0396 PL 0
MT 350 . A . 283 . DP=451;DP4=333,83,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0115 PL 0
MT 351 . A . 283 . DP=456;DP4=322,89,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0445 PL 0
MT 352 . A . 283 . DP=458;DP4=321,98,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0245 PL 0
MT 353 . C . 283 . DP=467;DP4=317,100,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0449 PL 0
MT 354 . C . 283 . DP=481;DP4=328,104,1,1;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.43,0.00091,0.012,1.0;VDB=0.0447 PL 0
MT 355 . C . 283 . DP=483;DP4=339,104,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 356 . C . 283 . DP=494;DP4=340,122,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.023,1.0,0.026;VDB=0.0166 PL 0
MT 357 . A . 283 . DP=500;DP4=353,115,2,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-06,1.0,1.0;VDB=0.0073 PL 0
MT 358 . A . 283 . DP=503;DP4=357,115,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0063 PL 0
MT 359 . A . 283 . DP=507;DP4=348,119,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0146 PL 0
MT 360 . A . 283 . DP=515;DP4=355,125,1,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.45,2.4e-06,0.29,0.0068;VDB=0.009 PL 0
MT 361 . A . 283 . DP=516;DP4=359,134,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.003 PL 0
MT 362 . C . 283 . DP=522;DP4=361,138,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.4e-06,0.078,1.0 PL 0
MT 363 . A . 283 . DP=528;DP4=380,128,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.2e-05,0.072,0.067;VDB=0.0185 PL 0
MT 364 . A . 283 . DP=540;DP4=370,143,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 365 . A . 283 . DP=552;DP4=379,152,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0112 PL 0
MT 366 . G . 283 . DP=553;DP4=385,146,1,2;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.19,5.9e-09,0.12,1.0;VDB=0.0429 PL 0
MT 367 . A . 283 . DP=560;DP4=386,146,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 368 . A . 283 . DP=566;DP4=388,156,2,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0066,0.32,0.38;VDB=0.0367 PL 0
MT 369 . C . 283 . DP=573;DP4=376,150,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0009 PL 0
MT 370 . C . 283 . DP=578;DP4=390,153,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 371 . C . 283 . DP=587;DP4=395,176,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.068,0.091,1.0;VDB=0.0369 PL 0
MT 372 . T . 283 . DP=597;DP4=415,162,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0063 PL 0
MT 373 . A . 283 . DP=607;DP4=413,169,2,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00013,1.0,1.0;VDB=0.0168 PL 0
MT 374 . A . 283 . DP=612;DP4=414,185,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0165 PL 0
MT 375 . C . 283 . DP=620;DP4=406,186,7,4;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.75,1.0,0.49,1.0;VDB=0.0394 PL 0
MT 376 . A . 283 . DP=631;DP4=423,191,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0302 PL 0
MT 377 . C . 283 . DP=641;DP4=421,192,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.5e-06,1.0,0.4;VDB=0.0342 PL 0
MT 378 . C . 283 . DP=656;DP4=432,204,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.12,0.093,1.0;VDB=0.0144 PL 0
MT 379 . A . 283 . DP=671;DP4=452,207,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0335 PL 0
MT 380 . G . 283 . DP=676;DP4=458,206,0,2;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.097,7.4e-09,0.0067,0.052;VDB=0.0193 PL 0
MT 381 . C . 283 . DP=686;DP4=456,209,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 382 . C . 283 . DP=691;DP4=462,216,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.9e-06,0.091,1.0 PL 0
MT 383 . T . 283 . DP=697;DP4=474,215,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-08,1.0,0.33;VDB=0.0111 PL 0
MT 384 . A . 283 . DP=699;DP4=467,221,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,7.9e-07,1.0,0.032 PL 0
MT 385 . A . 283 . DP=702;DP4=465,221,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.071,1.0,0.23;VDB=0.027 PL 0
MT 386 . C . 283 . DP=707;DP4=464,223,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.022,1.0,0.064;VDB=0.0245 PL 0
MT 387 . C . 283 . DP=713;DP4=468,230,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2e-09,1.0,1.0 PL 0
MT 388 . A . 283 . DP=719;DP4=477,234,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 389 . G . 283 . DP=725;DP4=488,235,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 390 . A . 283 . DP=727;DP4=471,239,2,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,8.2e-09,0.34,1.0;VDB=0.0165 PL 0
MT 391 . T . 283 . DP=736;DP4=490,238,2,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.7e-07,0.34,1.0;VDB=0.0193 PL 0
MT 392 . T . 283 . DP=744;DP4=488,241,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-09,1.0,1.0 PL 0
MT 393 . T . 283 . DP=746;DP4=486,241,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 394 . C . 283 . DP=750;DP4=496,250,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0202 PL 0
MT 395 . A . 283 . DP=746;DP4=492,247,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 396 . A . 283 . DP=752;DP4=480,252,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 397 . A . 283 . DP=755;DP4=479,258,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.8e-06,0.096,1.0;VDB=0.0215 PL 0
MT 398 . T . 283 . DP=759;DP4=495,253,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 399 . T . 283 . DP=763;DP4=488,256,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.9e-07,0.017,0.11 PL 0
MT 400 . T . 283 . DP=764;DP4=485,262,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0138 PL 0
MT 401 . T . 283 . DP=772;DP4=483,271,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 402 . A . 283 . DP=767;DP4=477,275,0,1;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,2.2e-06,0.093,1.0;VDB=0.019 PL 0
MT 403 . T . 283 . DP=767;DP4=484,268,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 404 . C . 283 . DP=771;DP4=478,284,0,1;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,4e-06,0.092,1.0 PL 0
MT 405 . T . 283 . DP=766;DP4=479,272,1,1;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.2e-21,1.0,0.19;VDB=0.0227 PL 0
MT 406 . T . 283 . DP=770;DP4=470,281,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 407 . T . 283 . DP=764;DP4=459,283,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 408 . T . 283 . DP=762;DP4=454,297,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 409 . G . 283 . DP=768;DP4=466,292,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 410 . G . 283 . DP=766;DP4=447,286,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0261 PL 0
MT 411 . C . 283 . DP=767;DP4=449,292,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 412 . G . 283 . DP=771;DP4=459,287,0,1;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.39,0.0013,1.0,0.029;VDB=0.0185 PL 0
MT 413 . G . 283 . DP=776;DP4=451,285,0,2;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,0.0059,0.025,1.0;VDB=0.0394 PL 0
MT 414 . T . 283 . DP=781;DP4=470,297,0,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.39,2.6e-05,1.0,0.061;VDB=0.0429 PL 0
MT 415 . A . 283 . DP=787;DP4=462,310,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 416 . T . 283 . DP=788;DP4=473,306,1,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.1e-12,0.31,1.0;VDB=0.0205 PL 0
MT 417 . G . 283 . DP=782;DP4=471,290,0,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.38,3.1e-08,0.079,1.0;VDB=0.0366 PL 0
MT 418 . C . 283 . DP=785;DP4=457,310,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.5e-08,1.0,0.013;VDB=0.0227 PL 0
MT 419 . A . 283 . DP=785;DP4=462,309,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0447 PL 0
MT 420 . C . 283 . DP=787;DP4=450,313,3,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.27,1.3e-11,0.11,1.0;VDB=0.0268 PL 0
MT 421 . T . 283 . DP=785;DP4=470,296,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 422 . T . 283 . DP=786;DP4=457,302,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 423 . T . 283 . DP=782;DP4=453,298,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-08,0.073,1.0;VDB=0.0253 PL 0
MT 424 . T . 283 . DP=780;DP4=453,299,0,2;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.16,1.3e-11,1.0,0.043;VDB=0.021 PL 0
MT 425 . A . 283 . DP=781;DP4=449,296,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 426 . A . 283 . DP=782;DP4=455,310,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0067 PL 0
MT 427 . C . 283 . DP=778;DP4=447,311,3,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.27,2.2e-13,0.0044,1.0;VDB=0.0342 PL 0
MT 428 . A . 283 . DP=785;DP4=460,311,2,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,0.0039,0.014,1.0;VDB=0.0013 PL 0
MT 429 . G . 283 . DP=782;DP4=468,290,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 430 . T . 283 . DP=783;DP4=468,279,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0417 PL 0
MT 431 . C . 283 . DP=783;DP4=456,308,3,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.28,2.7e-07,0.25,0.48;VDB=0.0417 PL 0
MT 432 . A . 283 . DP=778;DP4=458,293,0,1;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.39,0.0053,1.0,0.074;VDB=0.0417 PL 0
MT 433 . C . 283 . DP=778;DP4=438,276,2,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.53,6.9e-09,0.011,1.0;VDB=0.0088 PL 0
MT 434 . C . 283 . DP=779;DP4=442,285,3,1;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.7e-16,1.0,0.0067;VDB=0.0367 PL 0
MT 435 . C . 283 . DP=775;DP4=447,282,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 436 . C . 283 . DP=773;DP4=436,286,3,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.28,1.7e-10,0.06,0.39;VDB=0.0233 PL 0
MT 437 . C . 283 . DP=773;DP4=444,285,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 438 . C . 283 . DP=772;DP4=449,298,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 439 . A . 283 . DP=773;DP4=448,284,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00018,1.0,1.0;VDB=0.0253 PL 0
MT 440 . A . 283 . DP=772;DP4=449,300,0,2;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.16,0.0016,1.0,0.27;VDB=0.0324 PL 0
MT 441 . C . 283 . DP=770;DP4=444,299,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 442 . T . 283 . DP=773;DP4=473,275,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0373 PL 0
MT 443 . A . 283 . DP=772;DP4=458,273,2,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.53,3.5e-09,0.18,0.012;VDB=0.0169 PL 0
MT 444 . A . 283 . DP=758;DP4=451,284,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0417 PL 0
MT 445 . C . 283 . DP=765;DP4=454,287,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00013,1.0,1.0;VDB=0.0124 PL 0
MT 446 . A . 283 . DP=763;DP4=465,283,0,1;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.38,1.0,1.0,1.0;VDB=0.0233 PL 0
MT 447 . C . 283 . DP=761;DP4=444,291,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.014,0.023,1.0;VDB=0.0121 PL 0
MT 448 . A . 283 . DP=768;DP4=459,293,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0033,0.025,1.0;VDB=0.0445 PL 0
MT 449 . T . 283 . DP=765;DP4=467,251,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0183 PL 0
MT 450 . T . 283 . DP=758;DP4=446,248,1,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00099,0.031,0.3;VDB=0.0242 PL 0
MT 451 . A . 283 . DP=766;DP4=458,292,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0166 PL 0
MT 452 . T . 283 . DP=761;DP4=467,250,0,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,6.8e-05,0.02,0.13 PL 0
MT 453 . T . 283 . DP=768;DP4=447,255,0,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,7e-06,1.0,0.074;VDB=0.0195 PL 0
MT 454 . T . 283 . DP=757;DP4=440,257,0,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,2.3e-05,1.0,1.0;VDB=0.0227 PL 0
MT 455 . T . 283 . DP=759;DP4=436,201,0,3;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.032,3.9e-07,0.22,0.48;VDB=0.0057 PL 0
MT 456 . C . 283 . DP=765;DP4=435,252,4,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.3,1.5e-10,0.0092,0.05;VDB=0.0018 PL 0
MT 457 . C . 283 . DP=765;DP4=437,252,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.54,8.3e-10,1.0,0.0021;VDB=0.0089 PL 0
MT 458 . C . 283 . DP=765;DP4=437,251,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.54,6.9e-06,1.0,1.0;VDB=0.0435 PL 0
MT 459 . C . 283 . DP=761;DP4=444,290,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00014,0.00041,0.49;VDB=0.0062 PL 0
MT 460 . T . 283 . DP=759;DP4=465,242,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0002 PL 0
MT 461 . C . 283 . DP=761;DP4=452,250,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0069 PL 0
MT 462 . C . 283 . DP=763;DP4=441,252,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 463 . C . 283 . DP=762;DP4=437,283,3,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.28,6.3e-06,0.16,0.39;VDB=0.0363 PL 0
MT 464 . A . 283 . DP=763;DP4=444,262,0,1;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,0.08,1.0,1.0;VDB=0.0367 PL 0
MT 465 . C . 283 . DP=762;DP4=453,290,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0215 PL 0
MT 466 . T . 283 . DP=758;DP4=465,244,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0115 PL 0
MT 467 . C . 283 . DP=757;DP4=460,246,0,1;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,2.1e-06,1.0,1.0;VDB=0.0343 PL 0
MT 468 . C . 283 . DP=754;DP4=440,251,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0175 PL 0
MT 469 . C . 283 . DP=755;DP4=445,293,1,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00029,0.0029,0.27;VDB=0.0096 PL 0
MT 470 . A . 283 . DP=762;DP4=446,296,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.02 PL 0
MT 471 . T . 283 . DP=759;DP4=463,256,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,0.001,0.0016,1.0;VDB=0.0232 PL 0
MT 472 . A . 283 . DP=757;DP4=448,287,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0027,0.002,0.16;VDB=0.0447 PL 0
MT 473 . C . 283 . DP=757;DP4=451,293,1,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.3e-07,0.033,1.0;VDB=0.0193 PL 0
MT 474 . T . 283 . DP=763;DP4=468,251,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0134 PL 0
MT 475 . A . 283 . DP=768;DP4=460,285,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.38,0.0041,0.0013,1.0;VDB=0.0268 PL 0
MT 476 . C . 283 . DP=768;DP4=462,292,0,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,1.3e-06,1.1e-05,1.0;VDB=0.02 PL 0
MT 477 . T . 283 . DP=772;DP4=474,257,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,0.00014,1.0,0.11;VDB=0.0242 PL 0
MT 478 . A . 283 . DP=772;DP4=462,253,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.54,8.5e-10,0.015,0.19;VDB=0.0054 PL 0
MT 479 . A . 283 . DP=773;DP4=458,298,1,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0012,1.0,0.038;VDB=0.0281 PL 0
MT 480 . T . 283 . DP=783;DP4=471,231,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0025 PL 0
MT 481 . C . 283 . DP=784;DP4=458,309,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.048,1.0,0.13;VDB=0.0217 PL 0
MT 482 . T . 283 . DP=783;DP4=460,259,2,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.62,0.0001,1.0,1.0;VDB=0.0335 PL 0
MT 483 . C . 283 . DP=791;DP4=460,322,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0077 PL 0
MT 484 . A . 283 . DP=792;DP4=457,324,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0225 PL 0
MT 485 . T . 283 . DP=799;DP4=467,258,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,0.064,1.0,1.0;VDB=0.0169 PL 0
MT 486 . C . 283 . DP=799;DP4=456,333,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 487 . A . 283 . DP=803;DP4=458,267,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 488 . A . 283 . DP=798;DP4=447,334,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.064,0.00075,1.0;VDB=0.0207 PL 0
MT 489 . T . 283 . DP=803;DP4=468,264,0,3;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.048,4.9e-06,0.042,0.021;VDB=0.0044 PL 0
MT 490 . A . 283 . DP=797;DP4=451,317,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.007,0.00036,0.4;VDB=0.0044 PL 0
MT 491 . C . 283 . DP=791;DP4=448,324,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 492 . A . 283 . DP=797;DP4=456,298,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.4,0.00027,0.0004,1.0;VDB=0.0156 PL 0
MT 493 . A . 283 . DP=798;DP4=457,282,0,3;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.056,0.00012,0.064,0.3;VDB=0.0115 PL 0
MT 494 . C . 283 . DP=804;DP4=444,277,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0156 PL 0
MT 495 . C . 283 . DP=814;DP4=460,288,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2e-05,1.0,0.27;VDB=0.0174 PL 0
MT 496 . C . 283 . DP=821;DP4=448,292,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,2e-06,1.0,0.11;VDB=0.0372 PL 0
MT 497 . C . 283 . DP=825;DP4=457,296,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,0.048,1.0,1.0;VDB=0.0207 PL 0
MT 498 . C . 283 . DP=828;DP4=460,304,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0253 PL 0
MT 499 . G . 283 . DP=831;DP4=469,285,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0037,1.0,0.015;VDB=0.0394 PL 0
MT 500 . C . 283 . DP=843;DP4=477,292,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.019 PL 0
MT 501 . C . 283 . DP=846;DP4=477,302,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 502 . C . 283 . DP=843;DP4=475,338,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0198 PL 0
MT 503 . A . 283 . DP=843;DP4=486,336,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0076 PL 0
MT 504 . T . 283 . DP=844;DP4=501,279,1,3;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.14,4.7e-06,3.5e-06,1.0;VDB=0.0115 PL 0
MT 505 . C . 283 . DP=836;DP4=481,308,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0119 PL 0
MT 506 . C . 283 . DP=835;DP4=479,332,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.5e-05,1.0,0.021;VDB=0.0089 PL 0
MT 507 . T . 283 . DP=841;DP4=498,307,1,3;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.16,1.7e-08,0.16,0.086;VDB=0.0324 PL 0
MT 508 . A . 283 . DP=847;DP4=483,322,2,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.7e-05,0.082,1.0;VDB=0.044 PL 0
MT 509 . C . 283 . DP=854;DP4=471,319,4,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,1.2e-09,0.0011,0.28;VDB=0.0394 PL 0
MT 510 . C . 283 . DP=853;DP4=463,322,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-06,1.0,0.045;VDB=0.018 PL 0
MT 511 . C . 283 . DP=855;DP4=470,358,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.7e-05,0.0014,0.053;VDB=0.0146 PL 0
MT 512 . A . 283 . DP=857;DP4=488,355,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.42,0.00018,0.0016,1.0;VDB=0.0166 PL 0
MT 513 . G . 283 . DP=857;DP4=496,312,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.29,2.2e-11,0.00027,1.0;VDB=0.0417 PL 0
MT 514 . C . 283 . DP=851;DP4=471,346,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.18,0.011,1.0 PL 0
MT 515 . A . 283 . DP=843;DP4=479,344,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0019,1.0,0.017;VDB=0.0445 PL 0
MT 516 . C . 283 . DP=839;DP4=472,342,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 517 . A . 283 . DP=850;DP4=475,350,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0
MT 518 . C . 283 . DP=841;DP4=457,349,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.43,0.00018,1.0,0.063;VDB=0.0155 PL 0
MT 519 . A . 283 . DP=839;DP4=470,343,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0394 PL 0
MT 520 . C . 283 . DP=833;DP4=457,341,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,1e-06,0.02,0.46;VDB=0.0145 PL 0
MT 521 . A . 283 . DP=831;DP4=463,335,1,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0021,1.0,0.0088;VDB=0.0394 PL 0
MT 522 . C . 283 . DP=835;DP4=462,345,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0118 PL 0
MT 523 . A . 283 . DP=833;DP4=463,329,0,4;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.03,5.1e-08,0.11,0.026;VDB=0.0335 PL 0
MT 524 . C . 283 . DP=828;DP4=454,324,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 525 . C . 283 . DP=828;DP4=448,333,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0101 PL 0
MT 526 . G . 283 . DP=829;DP4=449,327,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0206 PL 0
MT 527 . C . 283 . DP=832;DP4=458,353,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,4.6e-09,0.089,0.31;VDB=0.0074 PL 0
MT 528 . T . 283 . DP=828;DP4=470,345,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.42,0.017,1.0,1.0;VDB=0.0417 PL 0
MT 529 . G . 283 . DP=819;DP4=465,322,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.41,9.5e-07,0.00067,1.0;VDB=0.0074 PL 0
MT 530 . C . 283 . DP=822;DP4=451,348,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0074 PL 0
MT 531 . T . 283 . DP=828;DP4=471,331,1,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.57,2e-10,0.065,1.0;VDB=0.0093 PL 0
MT 532 . A . 283 . DP=830;DP4=433,335,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,5e-06,1.0,0.15;VDB=0.02 PL 0
MT 533 . A . 283 . DP=825;DP4=431,343,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,5.8e-06,0.017,1.0;VDB=0.0374 PL 0
MT 534 . C . 283 . DP=828;DP4=452,322,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 535 . C . 283 . DP=827;DP4=441,333,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00017,1.1e-06,1.0;VDB=0.0253 PL 0
MT 536 . C . 283 . DP=830;DP4=446,328,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.004 PL 0
MT 537 . C . 283 . DP=830;DP4=436,361,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0212 PL 0
MT 538 . A . 283 . DP=830;DP4=461,358,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0245 PL 0
MT 539 . T . 283 . DP=832;DP4=474,330,1,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.57,8.2e-07,1.5e-05,1.0;VDB=0.0445 PL 0
MT 540 . A . 283 . DP=834;DP4=456,327,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.27,2.4e-05,1.0,0.078;VDB=0.0445 PL 0
MT 541 . C . 283 . DP=828;DP4=442,326,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,0.00044,0.01,0.18;VDB=0.0435 PL 0
MT 542 . C . 283 . DP=832;DP4=437,327,4,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.4,1.7e-12,8e-07,1.0;VDB=0.0447 PL 0
MT 543 . C . 283 . DP=829;DP4=448,323,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.27,5.3e-09,1.0,0.3;VDB=0.0429 PL 0
MT 544 . C . 283 . DP=833;DP4=459,326,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.27,4e-07,1.0;VDB=0.0153 PL 0
MT 545 . G . 283 . DP=831;DP4=453,338,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0373 PL 0
MT 546 . A . 283 . DP=831;DP4=460,323,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0354 PL 0
MT 547 . A . 283 . DP=826;DP4=461,331,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.42,2.8e-05,0.00042,0.027;VDB=0.0268 PL 0
MT 548 . C . 283 . DP=827;DP4=460,317,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 549 . C . 283 . DP=839;DP4=461,350,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.26,2e-08,1.0,0.01;VDB=0.0051 PL 0
MT 550 . A . 283 . DP=840;DP4=469,331,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0417 PL 0
MT 551 . A . 283 . DP=837;DP4=468,342,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.017,1.0,1.0;VDB=0.0367 PL 0
MT 552 . C . 283 . DP=834;DP4=457,322,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,3.6e-05,1.0,0.34;VDB=0.0183 PL 0
MT 553 . C . 283 . DP=838;DP4=459,345,4,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.14,2.1e-13,0.00082,1.0;VDB=0.0367 PL 0
MT 554 . A . 283 . DP=842;DP4=482,321,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00051,0.17,0.24;VDB=0.0123 PL 0
MT 555 . A . 283 . DP=842;DP4=478,326,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.41,3.8e-08,0.00018,1.0;VDB=0.0165 PL 0
MT 556 . A . 283 . DP=843;DP4=473,331,0,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.17,5.5e-08,1.0,0.31;VDB=0.0429 PL 0
MT 557 . C . 283 . DP=843;DP4=463,321,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.7e-05,1.0,1.0;VDB=0.0435 PL 0
MT 558 . C . 283 . DP=839;DP4=462,321,2,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-12,5.7e-15,1.0;VDB=0.0447 PL 0
MT 559 . C . 283 . DP=827;DP4=454,315,4,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,6.5e-16,0.007,0.31;VDB=0.0073 PL 0
MT 560 . C . 283 . DP=816;DP4=450,334,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.9e-05,9.4e-08,1.0 PL 0
MT 561 . A . 283 . DP=821;DP4=470,317,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.4,0.049,1.0,1.0;VDB=0.0074 PL 0
MT 562 . A . 283 . DP=827;DP4=457,322,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0002 PL 0
MT 563 . A . 283 . DP=834;DP4=457,340,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 564 . G . 283 . DP=828;DP4=478,331,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.011,1.0,1.0;VDB=0.0025 PL 0
MT 565 . A . 283 . DP=824;DP4=452,331,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,0.00016,0.0075,0.14;VDB=0.0429 PL 0
MT 566 . C . 283 . DP=827;DP4=451,332,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00033,2.7e-05,1.0;VDB=0.0123 PL 0
MT 567 . A . 283 . DP=827;DP4=472,315,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.4,0.29,1.0,1.0;VDB=0.0367 PL 0
MT 568 . C . 283 . DP=827;DP4=449,310,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0116 PL 0
MT 569 . C . 283 . DP=826;DP4=444,307,6,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.086,3.2e-15,2.2e-08,1.0;VDB=0.0141 PL 0
MT 570 . C . 283 . DP=819;DP4=436,301,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,0.0003,1.0,1.0;VDB=0.0241 PL 0
MT 571 . C . 283 . DP=822;DP4=459,302,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0025 PL 0
MT 572 . C . 283 . DP=822;DP4=459,305,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 573 . C . 283 . DP=823;DP4=466,317,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0133 PL 0
MT 574 . A . 283 . DP=826;DP4=488,315,1,2;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.56,4.9e-06,0.019,1.0;VDB=0.044 PL 0
MT 575 . C . 283 . DP=827;DP4=479,314,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0128 PL 0
MT 576 . A . 283 . DP=831;DP4=495,313,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0028,1.6e-05,0.36;VDB=0.0169 PL 0
MT 577 . G . 283 . DP=830;DP4=516,300,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0195 PL 0
MT 578 . T . 283 . DP=837;DP4=519,299,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0302 PL 0
MT 579 . T . 283 . DP=833;DP4=495,295,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 580 . T . 283 . DP=839;DP4=497,302,1,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.3e-06,0.00033,0.061;VDB=0.0042 PL 0
MT 581 . A . 283 . DP=848;DP4=509,313,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8e-05,1.0,0.29;VDB=0.0088 PL 0
MT 582 . T . 283 . DP=848;DP4=531,308,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8e-07,1.0,0.33;VDB=0.0184 PL 0
MT 583 . G . 283 . DP=842;DP4=524,304,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.5e-07,2.9e-06,0.24 PL 0
MT 584 . T . 283 . DP=848;DP4=530,310,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 585 . A . 283 . DP=844;DP4=499,317,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.021 PL 0
MT 586 . G . 283 . DP=835;DP4=516,304,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,4.9e-06,1.0,0.035;VDB=0.044 PL 0
MT 587 . C . 283 . DP=847;DP4=503,324,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 588 . T . 283 . DP=847;DP4=521,309,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,2.3e-05,2.5e-12,1.0;VDB=0.0051 PL 0
MT 589 . T . 283 . DP=846;DP4=502,310,0,2;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,2.1e-14,0.0001,0.29;VDB=0.0227 PL 0
MT 590 . A . 283 . DP=843;DP4=504,320,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.02 PL 0
MT 591 . C . 283 . DP=847;DP4=497,316,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,1.3e-11,0.00017,0.43;VDB=0.0263 PL 0
MT 592 . C . 283 . DP=853;DP4=492,335,3,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.65,1.8e-12,1.2e-33,1.0;VDB=0.0169 PL 0
MT 593 . T . 283 . DP=853;DP4=511,317,3,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.29,6e-10,0.005,0.47;VDB=0.0073 PL 0
MT 594 . C . 283 . DP=853;DP4=507,323,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0017,1.0,1.0;VDB=0.0121 PL 0
MT 595 . C . 283 . DP=855;DP4=495,333,1,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.9e-14,0.00031,0.29;VDB=0.0215 PL 0
MT 596 . T . 283 . DP=859;DP4=513,329,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0032 PL 0
MT 597 . C . 283 . DP=861;DP4=509,338,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0195 PL 0
MT 598 . A . 283 . DP=853;DP4=513,318,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 599 . A . 283 . DP=845;DP4=507,310,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.7e-06,1.0,0.021;VDB=0.0 PL 0
MT 600 . A . 283 . DP=847;DP4=509,316,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.023,1.0,0.036;VDB=0.0101 PL 0
MT 601 . G . 283 . DP=846;DP4=525,302,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,1.6e-07,1.1e-06,1.0;VDB=0.0242 PL 0
MT 602 . C . 283 . DP=847;DP4=508,317,3,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.29,7.8e-13,0.0041,0.07;VDB=0.0013 PL 0
MT 603 . A . 283 . DP=861;DP4=534,303,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.54,7.4e-14,0.00014,0.5;VDB=0.0215 PL 0
MT 604 . A . 283 . DP=866;DP4=528,319,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,7.1e-07,1.0,0.036;VDB=0.0205 PL 0
MT 605 . T . 283 . DP=873;DP4=547,316,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0099 PL 0
MT 606 . A . 283 . DP=884;DP4=540,326,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.18,1.0,1.0;VDB=0.0356 PL 0
MT 607 . C . 283 . DP=880;DP4=540,323,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0086 PL 0
MT 608 . A . 283 . DP=883;DP4=542,324,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.8e-06,1.0,1.0;VDB=0.0374 PL 0
MT 609 . C . 283 . DP=890;DP4=548,326,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0163 PL 0
MT 610 . T . 283 . DP=900;DP4=572,322,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0242 PL 0
MT 611 . G . 283 . DP=905;DP4=577,314,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,0.04,1.0,1.0;VDB=0.0394 PL 0
MT 612 . A . 283 . DP=904;DP4=568,314,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0049,1.0,0.18 PL 0
MT 613 . A . 283 . DP=913;DP4=571,316,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00039,1.0,0.49;VDB=0.0064 PL 0
MT 614 . A . 283 . DP=918;DP4=571,314,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0029,1.0,1.0;VDB=0.018 PL 0
MT 615 . A . 283 . DP=924;DP4=570,328,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0144 PL 0
MT 616 . T . 283 . DP=926;DP4=593,318,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0324 PL 0
MT 617 . G . 283 . DP=926;DP4=592,325,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 618 . T . 283 . DP=932;DP4=591,320,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.044 PL 0
MT 619 . T . 283 . DP=936;DP4=586,317,0,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.12,9.1e-09,0.06,1.0;VDB=0.0207 PL 0
MT 620 . T . 283 . DP=933;DP4=581,315,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-06,1.0,0.057;VDB=0.0245 PL 0
MT 621 . A . 283 . DP=930;DP4=585,327,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 622 . G . 283 . DP=925;DP4=600,317,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 623 . A . 283 . DP=925;DP4=584,317,1,1;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.9e-13,0.017,0.03;VDB=0.0414 PL 0
MT 624 . C . 283 . DP=928;DP4=584,303,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0116 PL 0
MT 625 . G . 283 . DP=930;DP4=593,301,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,0.0069,1.0,0.24;VDB=0.0143 PL 0
MT 626 . G . 283 . DP=920;DP4=583,289,1,2;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.26,3e-08,0.011,0.15;VDB=0.0435 PL 0
MT 627 . G . 283 . DP=922;DP4=583,290,0,1;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.33,1.1e-06,1.0,1.0;VDB=0.0429 PL 0
MT 628 . C . 283 . DP=921;DP4=584,303,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0111 PL 0
MT 629 . T . 283 . DP=926;DP4=613,293,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.5e-08,1.0,0.1;VDB=0.009 PL 0
MT 630 . C . 283 . DP=927;DP4=604,308,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0363 PL 0
MT 631 . A . 283 . DP=925;DP4=609,306,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0343 PL 0
MT 632 . C . 283 . DP=923;DP4=595,309,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,5.8e-20,0.15,1.0;VDB=0.0335 PL 0
MT 633 . A . 283 . DP=926;DP4=606,312,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 634 . T . 283 . DP=926;DP4=614,282,0,1;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.32,0.0078,1.0,1.0;VDB=0.0125 PL 0
MT 635 . C . 283 . DP=925;DP4=597,304,6,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.19,2.3e-19,0.00018,0.23;VDB=0.0447 PL 0
MT 636 . A . 283 . DP=926;DP4=607,302,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0009,0.048,1.0;VDB=0.0435 PL 0
MT 637 . C . 283 . DP=933;DP4=589,289,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0029,1.0,1.0;VDB=0.0207 PL 0
MT 638 . C . 283 . DP=935;DP4=597,290,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 639 . C . 283 . DP=928;DP4=594,289,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 640 . C . 283 . DP=932;DP4=591,309,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0077 PL 0
MT 641 . A . 283 . DP=935;DP4=603,314,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 642 . T . 283 . DP=935;DP4=620,289,0,3;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.033,4.4e-10,0.44,1.0;VDB=0.0268 PL 0
MT 643 . A . 283 . DP=931;DP4=599,299,2,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.1e-09,0.29,0.0039;VDB=0.0173 PL 0
MT 644 . A . 283 . DP=927;DP4=593,298,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0192 PL 0
MT 645 . A . 283 . DP=928;DP4=593,318,1,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.5e-05,0.094,1.0;VDB=0.0335 PL 0
MT 646 . C . 283 . DP=927;DP4=591,319,1,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.1e-06,1.0,0.054;VDB=0.0237 PL 0
MT 647 . A . 283 . DP=932;DP4=602,303,0,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.34,1.5e-08,0.02,0.02 PL 0
MT 648 . A . 283 . DP=931;DP4=591,304,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 649 . A . 283 . DP=937;DP4=596,317,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 650 . T . 283 . DP=948;DP4=625,303,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0299 PL 0
MT 651 . A . 283 . DP=940;DP4=604,317,3,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.56,4.4e-09,1.0,1.0;VDB=0.0215 PL 0
MT 652 . G . 283 . DP=931;DP4=610,301,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 653 . G . 283 . DP=929;DP4=592,300,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0145 PL 0
MT 654 . T . 283 . DP=935;DP4=609,309,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.039,0.079,0.099;VDB=0.0445 PL 0
MT 655 . T . 283 . DP=940;DP4=601,309,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00025,1.0,0.33;VDB=0.0215 PL 0
MT 656 . T . 283 . DP=938;DP4=594,314,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0227 PL 0
MT 657 . G . 283 . DP=938;DP4=613,300,0,5;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.004,1.5e-13,0.083,0.12;VDB=0.0414 PL 0
MT 658 . G . 283 . DP=938;DP4=592,300,1,2;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.26,2.3e-11,1.0,1.0;VDB=0.0414 PL 0
MT 659 . T . 283 . DP=934;DP4=608,290,1,4;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.041,6.2e-12,1.0,0.46;VDB=0.0445 PL 0
MT 660 . C . 283 . DP=931;DP4=594,302,2,1;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.2e-19,0.056,0.13;VDB=0.0302 PL 0
MT 661 . C . 283 . DP=928;DP4=586,312,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0156 PL 0
MT 662 . T . 283 . DP=925;DP4=614,298,0,1;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.33,7.3e-06,1.0,0.33;VDB=0.0233 PL 0
MT 663 . A . 283 . DP=922;DP4=592,311,0,1;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,1e-07,0.17,0.016;VDB=0.02 PL 0
MT 664 . G . 283 . DP=915;DP4=600,298,1,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.054,0.0044,1.0;VDB=0.0248 PL 0
MT 665 . C . 283 . DP=911;DP4=567,292,4,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.31,8.9e-10,1.0,1.0;VDB=0.0367 PL 0
MT 666 . C . 283 . DP=906;DP4=576,308,2,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,5.6e-11,0.48,0.28;VDB=0.0238 PL 0
MT 667 . T . 283 . DP=908;DP4=595,299,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 668 . T . 283 . DP=906;DP4=582,298,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 669 . T . 283 . DP=905;DP4=574,303,2,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,2.6e-10,0.26,0.22;VDB=0.0252 PL 0
MT 670 . C . 283 . DP=901;DP4=582,310,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 671 . T . 283 . DP=900;DP4=590,304,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 672 . A . 283 . DP=899;DP4=573,307,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 673 . T . 283 . DP=902;DP4=591,301,1,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.7e-08,0.05,1.0;VDB=0.02 PL 0
MT 674 . T . 283 . DP=898;DP4=576,300,1,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.9e-12,1.0,0.03 PL 0
MT 675 . A . 283 . DP=893;DP4=576,301,2,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,7.1e-10,0.36,1.0;VDB=0.01 PL 0
MT 676 . G . 283 . DP=888;DP4=586,290,2,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.6e-14,1.0,0.34;VDB=0.0135 PL 0
MT 677 . C . 283 . DP=879;DP4=562,290,2,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,0.0012,1.0,0.11;VDB=0.0202 PL 0
MT 678 . T . 283 . DP=875;DP4=585,279,0,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0
MT 679 . C . 283 . DP=872;DP4=571,284,1,1;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,9.3e-10,0.38,0.06;VDB=0.0175 PL 0
MT 680 . T . 283 . DP=874;DP4=583,283,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 681 . T . 283 . DP=870;DP4=569,275,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 682 . A . 283 . DP=860;DP4=568,276,2,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1e-11,0.15,1.0;VDB=0.0252 PL 0
MT 683 . G . 283 . DP=858;DP4=584,270,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 684 . T . 283 . DP=855;DP4=584,262,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 685 . A . 283 . DP=853;DP4=571,262,1,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.3e-08,1.0,0.23 PL 0
MT 686 . A . 283 . DP=848;DP4=571,262,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 687 . G . 283 . DP=847;DP4=585,257,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 688 . A . 283 . DP=845;DP4=569,262,1,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.5e-07,0.15,1.0;VDB=0.0253 PL 0
MT 689 . T . 283 . DP=845;DP4=580,257,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.025 PL 0
MT 690 . T . 283 . DP=852;DP4=569,264,0,1;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.32,8.9e-09,0.26,1.0 PL 0
MT 691 . A . 283 . DP=846;DP4=568,263,1,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.6e-05,0.085,0.031;VDB=0.0078 PL 0
MT 692 . C . 283 . DP=843;DP4=554,266,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 693 . A . 283 . DP=835;DP4=566,262,0,2;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.1,2.1e-10,0.086,0.023;VDB=0.0168 PL 0
MT 694 . C . 283 . DP=833;DP4=556,263,1,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.8e-08,0.073,0.12;VDB=0.0 PL 0
MT 695 . A . 283 . DP=838;DP4=569,262,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0207 PL 0
MT 696 . T . 283 . DP=837;DP4=577,253,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 697 . G . 283 . DP=836;DP4=575,249,1,2;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.22,3.7e-16,1.0,1.0;VDB=0.0245 PL 0
MT 698 . C . 283 . DP=836;DP4=559,256,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.0,0.18,1.0;VDB=0.0106 PL 0
MT 699 . A . 283 . DP=833;DP4=571,253,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 700 . A . 283 . DP=830;DP4=558,258,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 701 . G . 283 . DP=826;DP4=565,248,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0062 PL 0
MT 702 . C . 283 . DP=834;DP4=554,266,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.019 PL 0
MT 703 . A . 283 . DP=828;DP4=563,260,0,1;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.32,2.7e-05,1.0,1.0 PL 0
MT 704 . T . 283 . DP=828;DP4=567,239,0,1;MQ=39;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.3,0.054,0.098,1.0;VDB=0.033 PL 0
MT 705 . C . 283 . DP=825;DP4=558,247,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0394 PL 0
MT 706 . C . 283 . DP=827;DP4=551,253,3,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.56,2.9e-10,0.045,1.0;VDB=0.0268 PL 0
MT 707 . C . 283 . DP=825;DP4=556,248,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0123 PL 0
MT 708 . C . 283 . DP=820;DP4=553,250,1,1;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.53,3.1e-06,1.0,0.16;VDB=0.0193 PL 0
MT 709 . G . 283 . DP=833;DP4=566,256,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 710 . T . 283 . DP=834;DP4=567,260,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0193 PL 0
MT 711 . T . 283 . DP=833;DP4=557,256,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 712 . C . 283 . DP=838;DP4=566,256,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 713 . C . 283 . DP=839;DP4=559,268,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,7.3e-06,0.48,1.0;VDB=0.0158 PL 0
MT 714 . A . 283 . DP=861;DP4=560,296,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0188 PL 0
MT 715 . G . 283 . DP=856;DP4=560,279,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 716 . T . 283 . DP=856;DP4=557,290,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.019,0.47,1.0;VDB=0.0073 PL 0
MT 717 . G . 283 . DP=853;DP4=554,288,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.1e-06,0.15,0.12;VDB=0.0111 PL 0
MT 718 . A . 283 . DP=854;DP4=546,300,0,1;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,0.028,1.0,1.0 PL 0
MT 719 . G . 283 . DP=851;DP4=547,279,0,2;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.11,0.00011,1.0,0.1;VDB=0.0435 PL 0
MT 720 . T . 283 . DP=859;DP4=545,281,2,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,0.001,0.21,0.32;VDB=0.035 PL 0
MT 721 . T . 283 . DP=860;DP4=543,276,1,1;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.4e-10,0.18,1.0;VDB=0.0057 PL 0
MT 722 . C . 283 . DP=862;DP4=540,307,1,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.2e-05,0.14,0.46 PL 0
MT 723 . A . 283 . DP=857;DP4=545,297,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.14,0.25,0.036;VDB=0.0394 PL 0
MT 724 . C . 283 . DP=862;DP4=535,283,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0038,0.45,1.0;VDB=0.0094 PL 0
MT 725 . C . 283 . DP=864;DP4=532,286,1,2;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.28,4.9e-14,0.34,1.0;VDB=0.0417 PL 0
MT 726 . C . 283 . DP=861;DP4=537,308,0,1;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,2.3e-06,1.0,0.14;VDB=0.0042 PL 0
MT 727 . T . 283 . DP=861;DP4=548,290,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0325 PL 0
MT 728 . C . 283 . DP=860;DP4=541,312,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 729 . T . 283 . DP=863;DP4=547,283,0,1;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.34,7.1e-05,0.24,0.39;VDB=0.0025 PL 0
MT 730 . A . 283 . DP=865;DP4=543,282,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 731 . A . 283 . DP=867;DP4=542,280,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 732 . A . 283 . DP=868;DP4=542,317,1,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0024,0.22,0.44;VDB=0.0049 PL 0
MT 733 . T . 283 . DP=872;DP4=546,269,1,2;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.26,8.1e-05,0.31,0.14;VDB=0.0268 PL 0
MT 734 . C . 283 . DP=874;DP4=540,316,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.022 PL 0
MT 735 . A . 283 . DP=876;DP4=545,313,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0073 PL 0
MT 736 . C . 283 . DP=877;DP4=537,280,1,1;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.7e-05,0.096,1.0;VDB=0.0215 PL 0
MT 737 . C . 283 . DP=874;DP4=522,330,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 738 . A . 283 . DP=875;DP4=533,331,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0057 PL 0
MT 739 . C . 283 . DP=880;DP4=533,293,0,1;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,0.00013,0.043,1.0;VDB=0.0225 PL 0
MT 740 . G . 283 . DP=879;DP4=529,324,0,2;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,0.00048,0.21,1.0;VDB=0.0074 PL 0
MT 741 . A . 283 . DP=886;DP4=531,345,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.021 PL 0
MT 742 . T . 283 . DP=888;DP4=539,306,0,3;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.048,1.5e-08,1.0,1.0;VDB=0.0006 PL 0
MT 743 . C . 283 . DP=887;DP4=533,344,1,1;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.4e-08,1.0,0.048;VDB=0.035 PL 0
MT 744 . A . 283 . DP=888;DP4=538,316,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 745 . A . 283 . DP=891;DP4=532,320,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 746 . A . 283 . DP=887;DP4=528,317,1,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.3e-06,0.17,0.46;VDB=0.0123 PL 0
MT 747 . A . 283 . DP=884;DP4=524,347,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0
MT 748 . G . 283 . DP=883;DP4=520,311,1,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.1e-05,0.035,1.0;VDB=0.0302 PL 0
MT 749 . G . 283 . DP=888;DP4=503,316,0,1;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.39,0.027,0.035,1.0;VDB=0.044 PL 0
MT 750 . A G 222 . DP=890;DP4=0,3,483,315;MQ=45;FQ=-282.0;AF1=1.0;AC1=2.0;PV4=0.062,1.0,0.18,1.0;VDB=0.0435 GT:PL:GQ 1/1:255,255,0:99
ok
testWrite (vcf.test.test_vcf.TestWriterDictionaryMeta) ... ok
test_samples (vcf.test.test_vcf.TestSamplesSpace) ... ok
test_metadata_whitespace (vcf.test.test_vcf.TestMetadataWhitespace) ... ok
test_mixed_filtering (vcf.test.test_vcf.TestMixedFiltering) ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/mixed-filtering.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_aaf (vcf.test.test_vcf.TestRecord) ... /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:620: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'>
reader = vcf.Reader(fh('example-4.1-ploidy.vcf'))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1-ploidy.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_call_rate (vcf.test.test_vcf.TestRecord) ... ok
test_coordinates_for_None_alt (vcf.test.test_vcf.TestRecord) ... ok
test_coordinates_for_breakend (vcf.test.test_vcf.TestRecord) ... ok
test_coordinates_for_deletion (vcf.test.test_vcf.TestRecord) ... ok
test_coordinates_for_insert_and_snp (vcf.test.test_vcf.TestRecord) ... ok
test_coordinates_for_insertion (vcf.test.test_vcf.TestRecord) ... ok
test_coordinates_for_insertion_and_deletion (vcf.test.test_vcf.TestRecord) ... ok
test_coordinates_for_multiple_snps (vcf.test.test_vcf.TestRecord) ... ok
test_coordinates_for_snp (vcf.test.test_vcf.TestRecord) ... ok
test_coordinates_for_snp_and_deletion (vcf.test.test_vcf.TestRecord) ... ok
test_dunder_eq (vcf.test.test_vcf.TestRecord) ... /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:583: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'>
rec = next(vcf.Reader(fh('example-4.0.vcf')))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_heterozygosity (vcf.test.test_vcf.TestRecord) ... ok
test_info_multiple_values (vcf.test.test_vcf.TestRecord) ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1-info-multiple-values.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_is_deletion (vcf.test.test_vcf.TestRecord) ... ok
test_is_indel (vcf.test.test_vcf.TestRecord) ... ok
test_is_snp (vcf.test.test_vcf.TestRecord) ... ok
test_is_snp_for_n_alt (vcf.test.test_vcf.TestRecord) ... ok
test_is_sv (vcf.test.test_vcf.TestRecord) ... /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:837: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1-sv.vcf' mode='rt' encoding='UTF-8'>
reader = vcf.Reader(fh('example-4.0.vcf'))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_is_sv_precise (vcf.test.test_vcf.TestRecord) ... /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:870: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1-sv.vcf' mode='rt' encoding='UTF-8'>
reader = vcf.Reader(fh('example-4.0.vcf'))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_is_transition (vcf.test.test_vcf.TestRecord) ... ok
test_num_calls (vcf.test.test_vcf.TestRecord) ... ok
test_pi (vcf.test.test_vcf.TestRecord) ... ok
test_pickle (vcf.test.test_vcf.TestRecord) ... ok
test_qual (vcf.test.test_vcf.TestRecord) ... ok
test_sv_end (vcf.test.test_vcf.TestRecord) ... /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:903: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1-sv.vcf' mode='rt' encoding='UTF-8'>
reader = vcf.Reader(fh('example-4.0.vcf'))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_var_subtype (vcf.test.test_vcf.TestRecord) ... /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:804: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'>
reader = vcf.Reader(fh('example-4.1-sv.vcf'))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_var_type (vcf.test.test_vcf.TestRecord) ... /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:770: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'>
reader = vcf.Reader(fh('example-4.1-sv.vcf'))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_dunder_eq (vcf.test.test_vcf.TestCall) ... ok
test_gt_bases (vcf.test.test_vcf.TestCall) ... ok
test_gt_types (vcf.test.test_vcf.TestCall) ... ok
test_phased (vcf.test.test_vcf.TestCall) ... ok
testFetchRange (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.'
testFetchesAllFromChromIfOnlyChromSpecified (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.'
testFetchesFromStartIfStartOnlySpecified (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.'
testNoVariantsForZeroLengthInterval (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.'
testNoVariantsInRange (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.'
testFetch (vcf.test.test_vcf.TestIssue201) ... skipped 'test requires installation of PySAM.'
testIterate (vcf.test.test_vcf.TestIssue201) ... skipped 'test requires installation of PySAM.'
test_vcf_metadata_parser_doesnt_break_with_empty_number_tags (vcf.test.test_vcf.TestIssue234) ... ok
test_FT_one_two (vcf.test.test_vcf.TestIssue246) ... /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:1361: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/FT.vcf' mode='rt' encoding='UTF-8'>
reader=list(vcf.Reader(fh('FT.vcf')))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_FT_pass_two (vcf.test.test_vcf.TestIssue246) ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/FT.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_remains_singleton_list (vcf.test.test_vcf.TestIssue254) ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-254.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_is_filt_call_one (vcf.test.test_vcf.TestIsFiltered) ... /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:1413: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/FT.vcf' mode='rt' encoding='UTF-8'>
reader = list(vcf.Reader(fh('FT.vcf')))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_is_filt_call_pass_two (vcf.test.test_vcf.TestIsFiltered) ... ok
test_is_filt_call_unset (vcf.test.test_vcf.TestIsFiltered) ... ok
test_is_filt_record (vcf.test.test_vcf.TestIsFiltered) ... ok
testOpenFilehandle (vcf.test.test_vcf.TestOpenMethods) ... ok
testOpenFilehandleGzipped (vcf.test.test_vcf.TestOpenMethods) ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.BufferedReader name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/tb.vcf.gz'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testOpenFilename (vcf.test.test_vcf.TestOpenMethods) ... ok
testOpenFilenameGzipped (vcf.test.test_vcf.TestOpenMethods) ... ok
testCLIListSamples (vcf.test.test_vcf.TestSampleFilter) ... skipped 'test broken for Python 3'
testCLIWithFilter (vcf.test.test_vcf.TestSampleFilter) ... skipped 'test broken for Python 3'
testSampleFilterModule (vcf.test.test_vcf.TestSampleFilter) ... /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:1486: ResourceWarning: unclosed file <_io.TextIOWrapper name='vcf/test/example-4.1.vcf' mode='rt' encoding='UTF-8'>
del filt
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testApplyFilter (vcf.test.test_vcf.TestFilter) ... skipped 'test currently broken'
testApplyMultipleFilters (vcf.test.test_vcf.TestFilter) ... skipped 'test currently broken'
test_issue_16 (vcf.test.test_vcf.TestRegression) ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-16.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_null_mono (vcf.test.test_vcf.TestRegression) ...
Record(CHROM=20, POS=14370, REF=G, ALT=[A])
Call(sample=NA00001, CallData(GT=0|0, GQ=48, DP=1, HQ=[51, 51]))
Call(sample=NA00002, CallData(GT=1|0, GQ=48, DP=8, HQ=[51, 51]))
Call(sample=NA00003, CallData(GT=1/1, GQ=43, DP=5, HQ=[None, None]))
Record(CHROM=20, POS=17330, REF=T, ALT=[A])
Call(sample=NA00001, CallData(GT=0|0, GQ=49, DP=3, HQ=[58, 50]))
Call(sample=NA00002, CallData(GT=0|1, GQ=3, DP=5, HQ=[65, 3]))
Call(sample=NA00003, CallData(GT=0/0, GQ=41, DP=3, HQ=None))
Record(CHROM=20, POS=1110696, REF=A, ALT=[G, T])
Call(sample=NA00001, CallData(GT=1|2, GQ=21, DP=6, HQ=[23, 27]))
Call(sample=NA00002, CallData(GT=2|1, GQ=2, DP=0, HQ=[18, 2]))
Call(sample=NA00003, CallData(GT=2/2, GQ=35, DP=4, HQ=None))
Record(CHROM=20, POS=1230237, REF=T, ALT=[None])
Call(sample=NA00001, CallData(GT=0|0, GQ=54, DP=7, HQ=[56, 60]))
Call(sample=NA00002, CallData(GT=0|0, GQ=48, DP=4, HQ=[51, 51]))
Call(sample=NA00003, CallData(GT=0/0, GQ=61, DP=2, HQ=None))
Record(CHROM=20, POS=1231234, REF=AT, ALT=[A])
Call(sample=NA00001, CallData(GT=1|1, GQ=23, DP=7, HQ=[26, 30]))
Call(sample=NA00002, CallData(GT=0|0, GQ=27, DP=9, HQ=[56, 60]))
Call(sample=NA00003, CallData(GT=0|0, GQ=31, DP=10, HQ=[65, 71]))
Record(CHROM=20, POS=1234567, REF=GTCT, ALT=[G, GTACT])
Call(sample=NA00001, CallData(GT=./., GQ=35, DP=4))
Call(sample=NA00002, CallData(GT=0/2, GQ=17, DP=2))
Call(sample=NA00003, CallData(GT=1/1, GQ=40, DP=3))
CallData(GT=0|0, GQ=48, DP=1, HQ=[51, 51])
CallData(GT=1|0, GQ=48, DP=8, HQ=[51, 51])
CallData(GT=1/1, GQ=43, DP=5, HQ=[None, None])
CallData(GT=0|0, GQ=49, DP=3, HQ=[58, 50])
CallData(GT=0|1, GQ=3, DP=5, HQ=[65, 3])
CallData(GT=0/0, GQ=41, DP=3, HQ=None)
CallData(GT=1|2, GQ=21, DP=6, HQ=[23, 27])
CallData(GT=2|1, GQ=2, DP=0, HQ=[18, 2])
CallData(GT=2/2, GQ=35, DP=4, HQ=None)
CallData(GT=0|0, GQ=54, DP=7, HQ=[56, 60])
CallData(GT=0|0, GQ=48, DP=4, HQ=[51, 51])
CallData(GT=0/0, GQ=61, DP=2, HQ=None)
CallData(GT=1|1, GQ=23, DP=7, HQ=[26, 30])
CallData(GT=0|0, GQ=27, DP=9, HQ=[56, 60])
CallData(GT=0|0, GQ=31, DP=10, HQ=[65, 71])
CallData(GT=./., GQ=35, DP=4)
CallData(GT=0/2, GQ=17, DP=2)
CallData(GT=1/1, GQ=40, DP=3)
/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/null_genotype_mono.vcf
##fileformat=VCFv4.1
##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[np_control.bam] read_buffer_size=null phone_home=STANDARD read_filter=[] intervals=[tests/read_chr.intervals] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL reference_sequence=/data/reference/ucsc/hg19/ucsc.hg19.fasta rodBind=[] nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=250 baq=OFF baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=1 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false logging_level=info log_to_file=null help=false genotype_likelihoods_model=SNP p_nonref_model=EXACT heterozygosity=0.001 pcr_error_rate=1.0E-4 genotyping_mode=DISCOVERY output_mode=EMIT_ALL_SITES standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=30.0 computeSLOD=false alleles=(RodBinding name= source=UNBOUND) min_base_quality_score=17 max_deletion_fraction=0.05 multiallelic=false max_alternate_alleles=5 min_indel_count_for_genotyping=5 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10.0 indelGapOpenPenalty=45.0 indelHaplotypeSize=80 bandedIndel=false indelDebug=false ignoreSNPAlleles=false dbsnp=(RodBinding name= source=UNBOUND) out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub debug_file=null metrics_file=null annotation=[] excludeAnnotation=[] filter_mismatching_base_and_quals=false"
##reference=file:///data/reference/ucsc/hg19/ucsc.hg19.fasta
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
##INFO=<ID=Dels,Number=1,Type=Float,Description="Fraction of Reads Containing Spanning Deletions">
##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
##INFO=<ID=HRun,Number=1,Type=Integer,Description="Largest Contiguous Homopolymer Run of Variant Allele In Either Direction">
##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes">
##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
##INFO=<ID=MQ0,Number=1,Type=Integer,Description="Total Mapping Quality Zero Reads">
##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype Quality">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##contig=<ID=chr1,length=249250621>
##contig=<ID=chr10,length=135534747>
##contig=<ID=chr11,length=135006516>
##contig=<ID=chr11_gl000202_random,length=40103>
##contig=<ID=chr12,length=133851895>
##contig=<ID=chr13,length=115169878>
##contig=<ID=chr14,length=107349540>
##contig=<ID=chr15,length=102531392>
##contig=<ID=chr16,length=90354753>
##contig=<ID=chr17,length=81195210>
##contig=<ID=chr17_ctg5_hap1,length=1680828>
##contig=<ID=chr17_gl000203_random,length=37498>
##contig=<ID=chr17_gl000204_random,length=81310>
##contig=<ID=chr17_gl000205_random,length=174588>
##contig=<ID=chr17_gl000206_random,length=41001>
##contig=<ID=chr18,length=78077248>
##contig=<ID=chr18_gl000207_random,length=4262>
##contig=<ID=chr19,length=59128983>
##contig=<ID=chr19_gl000208_random,length=92689>
##contig=<ID=chr19_gl000209_random,length=159169>
##contig=<ID=chr1_gl000191_random,length=106433>
##contig=<ID=chr1_gl000192_random,length=547496>
##contig=<ID=chr2,length=243199373>
##contig=<ID=chr20,length=63025520>
##contig=<ID=chr21,length=48129895>
##contig=<ID=chr21_gl000210_random,length=27682>
##contig=<ID=chr22,length=51304566>
##contig=<ID=chr3,length=198022430>
##contig=<ID=chr4,length=191154276>
##contig=<ID=chr4_ctg9_hap1,length=590426>
##contig=<ID=chr4_gl000193_random,length=189789>
##contig=<ID=chr4_gl000194_random,length=191469>
##contig=<ID=chr5,length=180915260>
##contig=<ID=chr6,length=171115067>
##contig=<ID=chr6_apd_hap1,length=4622290>
##contig=<ID=chr6_cox_hap2,length=4795371>
##contig=<ID=chr6_dbb_hap3,length=4610396>
##contig=<ID=chr6_mann_hap4,length=4683263>
##contig=<ID=chr6_mcf_hap5,length=4833398>
##contig=<ID=chr6_qbl_hap6,length=4611984>
##contig=<ID=chr6_ssto_hap7,length=4928567>
##contig=<ID=chr7,length=159138663>
##contig=<ID=chr7_gl000195_random,length=182896>
##contig=<ID=chr8,length=146364022>
##contig=<ID=chr8_gl000196_random,length=38914>
##contig=<ID=chr8_gl000197_random,length=37175>
##contig=<ID=chr9,length=141213431>
##contig=<ID=chr9_gl000198_random,length=90085>
##contig=<ID=chr9_gl000199_random,length=169874>
##contig=<ID=chr9_gl000200_random,length=187035>
##contig=<ID=chr9_gl000201_random,length=36148>
##contig=<ID=chrM,length=16571>
##contig=<ID=chrUn_gl000211,length=166566>
##contig=<ID=chrUn_gl000212,length=186858>
##contig=<ID=chrUn_gl000213,length=164239>
##contig=<ID=chrUn_gl000214,length=137718>
##contig=<ID=chrUn_gl000215,length=172545>
##contig=<ID=chrUn_gl000216,length=172294>
##contig=<ID=chrUn_gl000217,length=172149>
##contig=<ID=chrUn_gl000218,length=161147>
##contig=<ID=chrUn_gl000219,length=179198>
##contig=<ID=chrUn_gl000220,length=161802>
##contig=<ID=chrUn_gl000221,length=155397>
##contig=<ID=chrUn_gl000222,length=186861>
##contig=<ID=chrUn_gl000223,length=180455>
##contig=<ID=chrUn_gl000224,length=179693>
##contig=<ID=chrUn_gl000225,length=211173>
##contig=<ID=chrUn_gl000226,length=15008>
##contig=<ID=chrUn_gl000227,length=128374>
##contig=<ID=chrUn_gl000228,length=129120>
##contig=<ID=chrUn_gl000229,length=19913>
##contig=<ID=chrUn_gl000230,length=43691>
##contig=<ID=chrUn_gl000231,length=27386>
##contig=<ID=chrUn_gl000232,length=40652>
##contig=<ID=chrUn_gl000233,length=45941>
##contig=<ID=chrUn_gl000234,length=40531>
##contig=<ID=chrUn_gl000235,length=34474>
##contig=<ID=chrUn_gl000236,length=41934>
##contig=<ID=chrUn_gl000237,length=45867>
##contig=<ID=chrUn_gl000238,length=39939>
##contig=<ID=chrUn_gl000239,length=33824>
##contig=<ID=chrUn_gl000240,length=41933>
##contig=<ID=chrUn_gl000241,length=42152>
##contig=<ID=chrUn_gl000242,length=43523>
##contig=<ID=chrUn_gl000243,length=43341>
##contig=<ID=chrUn_gl000244,length=39929>
##contig=<ID=chrUn_gl000245,length=36651>
##contig=<ID=chrUn_gl000246,length=38154>
##contig=<ID=chrUn_gl000247,length=36422>
##contig=<ID=chrUn_gl000248,length=39786>
##contig=<ID=chrUn_gl000249,length=38502>
##contig=<ID=chrX,length=155270560>
##contig=<ID=chrY,length=59373566>
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA19239
chr1 65312657 . G . . . . GT ./.
/usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/null_genotype_mono.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_trim (vcf.test.test_vcf.TestUtils) ... ok
test_walk (vcf.test.test_vcf.TestUtils) ... /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:1587: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'>
reader1 = vcf.Reader(fh('walk_left.vcf'))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:1588: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'>
reader2 = vcf.Reader(fh('example-4.0.vcf'))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:1604: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/walk_left.vcf' mode='rt' encoding='UTF-8'>
reader1 = vcf.Reader(fh('issue-140-file1.vcf'))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:1605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'>
reader2 = vcf.Reader(fh('issue-140-file2.vcf'))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:1606: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'>
reader3 = vcf.Reader(fh('issue-140-file3.vcf'))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-140-file1.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-140-file2.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-140-file3.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_meta (vcf.test.test_vcf.TestGATKMeta) ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/gatk_26_meta.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_read_uncalled (vcf.test.test_vcf.TestUncalledGenotypes)
Test that uncalled genotypes are properly read into ... ok
test_write_uncalled (vcf.test.test_vcf.TestUncalledGenotypes)
Test that uncalled genotypes are written just as ... ok
test_strelka (vcf.test.test_vcf.TestStrelka) ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/strelka.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_parse (vcf.test.test_vcf.TestBadInfoFields) ... /usr/lib/python3.7/unittest/case.py:628: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/bad-info-character.vcf' mode='rt' encoding='UTF-8'>
testMethod()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
----------------------------------------------------------------------
Ran 104 tests in 42.946s
OK (skipped=11)
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf
running install
running build
running build_py
running egg_info
writing PyVCF.egg-info/PKG-INFO
writing dependency_links to PyVCF.egg-info/dependency_links.txt
writing entry points to PyVCF.egg-info/entry_points.txt
writing requirements to PyVCF.egg-info/requires.txt
writing top-level names to PyVCF.egg-info/top_level.txt
reading manifest file 'PyVCF.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'PyVCF.egg-info/SOURCES.txt'
running build_ext
skipping 'vcf/cparse.c' Cython extension (up-to-date)
running build_scripts
running install_lib
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/__init__.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/filters.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/model.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/parser.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/sample_filter.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/utils.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/__init__.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/prof.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/1kg.sites.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/FT.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/bad-info-character.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/bcftools.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/contig_idonly.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.0.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1-bnd.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1-info-multiple-values.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1-ploidy.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1-sv.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.2.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/freebayes.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/gatk.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/gatk_26_meta.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/info-type-character.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-140-file1.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-140-file2.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-140-file3.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-16.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-214.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-254.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue_49.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/metadata-whitespace.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/mixed-filtering.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/null_genotype_mono.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/parse-meta-line.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/samples-space.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/samtools.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/strelka.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/string_as_flag.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/uncalled_genotypes.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/walk_left.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/walk_refcall.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/1kg.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-201.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/tb.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-201.vcf.gz.tbi -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/tb.vcf.gz.tbi -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/__pycache__/__init__.cpython-37.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/__pycache__/test_vcf.cpython-37.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/cparse.pyx -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/cparse.cpython-37m-arm-linux-gnueabihf.so -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/__pycache__/__init__.cpython-37.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/__pycache__/parser.cpython-37.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/__pycache__/model.cpython-37.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/__pycache__/filters.cpython-37.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/__pycache__/sample_filter.cpython-37.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/__pycache__/utils.cpython-37.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/__pycache__
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/filters.py to filters.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/model.py to model.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/parser.py to parser.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/sample_filter.py to sample_filter.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/utils.py to utils.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test/prof.py to prof.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test/test_vcf.py to test_vcf.cpython-37.pyc
running install_egg_info
Copying PyVCF.egg-info to /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/PyVCF-0.6.8.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/bin
copying build/scripts-3.7/vcf_melt -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/bin
copying build/scripts-3.7/vcf_filter.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/bin
copying build/scripts-3.7/vcf_sample_filter.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/bin
changing mode of /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/bin/vcf_melt to 775
changing mode of /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/bin/vcf_filter.py to 775
changing mode of /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/bin/vcf_sample_filter.py to 775
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c'
dh_install
# move testdata to separate dir
mkdir -p debian/python-pyvcf-examples/usr/share/doc/python-pyvcf-examples
mv `find debian/python3-pyvcf -type d -name test | head -n 1` debian/python-pyvcf-examples/usr/share/doc/python-pyvcf-examples
find debian/python3-pyvcf -type d -name test | xargs rm -rf
find debian/python-pyvcf-examples/usr/share/doc/python-pyvcf-examples -name "__pycache__" | xargs rm -rf
mkdir -p debian/pyvcf/usr
mv debian/python3-pyvcf/usr/bin debian/pyvcf/usr
# strip .py extension
for py in debian/pyvcf/usr/bin/*.py ; do \
mv ${py} debian/pyvcf/usr/bin/`basename ${py} .py` ; \
done
make[1]: Leaving directory '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
debian/rules override_dh_python3
make[1]: Entering directory '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c'
dh_python3 --verbose
D: dh_python3 dh_python3:161: version: 4.20190722
D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '--verbose']
D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': True, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': None}
D: dh_python3 dh_python3:164: args: []
D: dh_python3 dh_python3:166: supported Python versions: 3.7 (default=3.7)
D: dh_python3 debhelper:107: skipping package: python-pyvcf-examples
D: dh_python3 debhelper:153: source=python-pyvcf, binary packages=['python3-pyvcf', 'pyvcf']
D: dh_python3 dh_python3:183: processing package python3-pyvcf...
D: dh_python3 fs:49: moving files from debian/python3-pyvcf/usr/lib/python3.7/dist-packages to debian/python3-pyvcf/usr/lib/python3/dist-packages/
D: dh_python3 tools:232: invoking: /usr/bin/python3.7 -c 'import sysconfig as s;print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))'
D: dh_python3 fs:260: package python3-pyvcf details = {'requires.txt': {'debian/python3-pyvcf/usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.7')}, 'ext_no_version': set()}
D: dh_python3 depends:114: generating dependencies for package python3-pyvcf
D: dh_python3 pydist:138: trying to find dependency for setuptools (python=None)
D: dh_python3 depends:272: D={'python3:any', 'python3 (<< 3.8)', 'python3-pkg-resources', 'python3 (>= 3.7~)'}; R=[]; S=[]; E=[], B=[]; RT=[]
D: dh_python3 dh_python3:183: processing package pyvcf...
D: dh_python3 fs:260: package pyvcf details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3, /usr/bin/python3}, 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()}
D: dh_python3 depends:114: generating dependencies for package pyvcf
D: dh_python3 depends:272: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[]
make[1]: Leaving directory '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c'
dh_installinit -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-pyvcf/usr/lib/python3/dist-packages/vcf/cparse.cpython-37m-arm-linux-gnueabihf.so was not linked against libpthread.so.0 (it uses none of the library's symbols)
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package python3-pyvcf: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-pyvcf: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-pyvcf: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-pyvcf: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pyvcf' in '../python3-pyvcf_0.6.8+git20170215.476169c-2_armhf.deb'.
dpkg-deb: building package 'python3-pyvcf-dbgsym' in '../python3-pyvcf-dbgsym_0.6.8+git20170215.476169c-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../python-pyvcf_0.6.8+git20170215.476169c-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-09-08T07:12:38Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-pyvcf_0.6.8+git20170215.476169c-2_armhf.changes:
-------------------------------------------------------
Format: 1.8
Date: Mon, 02 Sep 2019 17:03:56 +0200
Source: python-pyvcf
Binary: python3-pyvcf python3-pyvcf-dbgsym
Architecture: armhf
Version: 0.6.8+git20170215.476169c-2
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
python3-pyvcf - Variant Call Format (VCF) parser for Python 3
Closes: 938106
Changes:
python-pyvcf (0.6.8+git20170215.476169c-2) unstable; urgency=medium
.
* Drop Python2 support
Closes: #938106
* debhelper-compat 12
* Standards-Version: 4.4.0
* Secure URI in copyright format
* Remove trailing whitespace in debian/copyright
* Remove unused lintian-override
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-pyvcf-dbgsym_0.6.8+git20170215.476169c-2_armhf.deb
----------------------------------------------------------
new Debian package, version 2.0.
size 79208 bytes: control archive=560 bytes.
432 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: python3-pyvcf-dbgsym
Source: python-pyvcf
Version: 0.6.8+git20170215.476169c-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 96
Depends: python3-pyvcf (= 0.6.8+git20170215.476169c-2)
Section: debug
Priority: optional
Description: debug symbols for python3-pyvcf
Build-Ids: e3c980165460bfa77a750ce01c58e332ec044de8
drwxr-xr-x root/root 0 2019-09-02 15:03 ./
drwxr-xr-x root/root 0 2019-09-02 15:03 ./usr/
drwxr-xr-x root/root 0 2019-09-02 15:03 ./usr/lib/
drwxr-xr-x root/root 0 2019-09-02 15:03 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-09-02 15:03 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-09-02 15:03 ./usr/lib/debug/.build-id/e3/
-rw-r--r-- root/root 87752 2019-09-02 15:03 ./usr/lib/debug/.build-id/e3/c980165460bfa77a750ce01c58e332ec044de8.debug
drwxr-xr-x root/root 0 2019-09-02 15:03 ./usr/share/
drwxr-xr-x root/root 0 2019-09-02 15:03 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-09-02 15:03 ./usr/share/doc/python3-pyvcf-dbgsym -> python3-pyvcf
python3-pyvcf_0.6.8+git20170215.476169c-2_armhf.deb
---------------------------------------------------
new Debian package, version 2.0.
size 42564 bytes: control archive=1832 bytes.
1232 bytes, 26 lines control
1393 bytes, 16 lines md5sums
252 bytes, 12 lines * postinst #!/bin/sh
401 bytes, 12 lines * prerm #!/bin/sh
Package: python3-pyvcf
Source: python-pyvcf
Version: 0.6.8+git20170215.476169c-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 150
Depends: libc6 (>= 2.4), python3 (<< 3.8), python3 (>= 3.7~), python3-pkg-resources, python3:any
Section: python
Priority: optional
Homepage: https://pypi.python.org/pypi/PyVCF
Description: Variant Call Format (VCF) parser for Python 3
The Variant Call Format (VCF) specifies the format of a text file used
in bioinformatics for storing gene sequence variations. The format has
been developed with the advent of large-scale genotyping and DNA
sequencing projects, such as the 1000 Genomes Project.
.
The intent of this module is to mimic the ``csv`` module in the Python
stdlib, as opposed to more flexible serialization formats like JSON or
YAML. ``vcf`` will attempt to parse the content of each record based on
the data types specified in the meta-information lines -- specifically
the ##INFO and
##FORMAT lines. If these lines are missing or incomplete, it will check
against the reserved types mentioned in the spec. Failing that, it will
just return strings.
.
This package provides the Python 3 modules.
drwxr-xr-x root/root 0 2019-09-02 15:03 ./
drwxr-xr-x root/root 0 2019-09-02 15:03 ./usr/
drwxr-xr-x root/root 0 2019-09-02 15:03 ./usr/lib/
drwxr-xr-x root/root 0 2019-09-02 15:03 ./usr/lib/python3/
drwxr-xr-x root/root 0 2019-09-02 15:03 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2019-09-02 15:03 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/
-rw-r--r-- root/root 1173 2019-09-02 15:03 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2019-09-02 15:03 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/dependency_links.txt
-rw-r--r-- root/root 232 2019-09-02 15:03 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/entry_points.txt
-rw-r--r-- root/root 0 2019-09-02 15:03 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/requires.txt
-rw-r--r-- root/root 4 2019-09-02 15:03 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/top_level.txt
drwxr-xr-x root/root 0 2019-09-02 15:03 ./usr/lib/python3/dist-packages/vcf/
-rw-r--r-- root/root 384 2017-02-15 13:48 ./usr/lib/python3/dist-packages/vcf/__init__.py
-rw-r--r-- root/root 55912 2019-09-02 15:03 ./usr/lib/python3/dist-packages/vcf/cparse.cpython-37m-arm-linux-gnueabihf.so
-rw-r--r-- root/root 2821 2017-02-15 13:48 ./usr/lib/python3/dist-packages/vcf/cparse.pyx
-rw-r--r-- root/root 6240 2017-02-15 13:48 ./usr/lib/python3/dist-packages/vcf/filters.py
-rw-r--r-- root/root 24390 2019-09-02 15:03 ./usr/lib/python3/dist-packages/vcf/model.py
-rw-r--r-- root/root 28057 2019-09-02 15:03 ./usr/lib/python3/dist-packages/vcf/parser.py
-rw-r--r-- root/root 4023 2019-09-02 15:03 ./usr/lib/python3/dist-packages/vcf/sample_filter.py
-rw-r--r-- root/root 3278 2019-09-02 15:03 ./usr/lib/python3/dist-packages/vcf/utils.py
drwxr-xr-x root/root 0 2019-09-02 15:03 ./usr/share/
drwxr-xr-x root/root 0 2019-09-02 15:03 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-09-02 15:03 ./usr/share/doc/python3-pyvcf/
-rw-r--r-- root/root 660 2019-09-02 15:03 ./usr/share/doc/python3-pyvcf/changelog.Debian.gz
-rw-r--r-- root/root 2326 2017-02-15 13:48 ./usr/share/doc/python3-pyvcf/changelog.gz
-rw-r--r-- root/root 1904 2019-09-02 15:03 ./usr/share/doc/python3-pyvcf/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 5804
Build-Time: 144
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 577
Job: python-pyvcf_0.6.8+git20170215.476169c-2
Machine Architecture: armhf
Package: python-pyvcf
Package-Time: 777
Source-Version: 0.6.8+git20170215.476169c-2
Space: 5804
Status: successful
Version: 0.6.8+git20170215.476169c-2
--------------------------------------------------------------------------------
Finished at 2019-09-08T07:12:38Z
Build needed 00:12:57, 5804k disc space