Build log for python-pyvcf (0.6.8+git20170215.476169c-10) on armhf

python-pyvcf → 0.6.8+git20170215.476169c-10 → armhf → 2023-12-08 05:38:55

sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01

+===================================================================================+
| python-pyvcf 0.6.8+git20170215.476169c-10 (armhf) Fri, 08 Dec 2023 05:28:45 +0000 |
+===================================================================================+

Package: python-pyvcf
Version: 0.6.8+git20170215.476169c-10
Source Version: 0.6.8+git20170215.476169c-10
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/trixie-staging-armhf-sbuild-5b35cda3-8429-4028-8167-2fd481d0cacf' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.3 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.0 MB]
Fetched 29.3 MB in 11s (2607 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'python-pyvcf' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-pyvcf.git
Please use:
git clone https://salsa.debian.org/med-team/python-pyvcf.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 948 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main python-pyvcf 0.6.8+git20170215.476169c-10 (dsc) [2408 B]
Get:2 http://172.17.4.1/private trixie-staging/main python-pyvcf 0.6.8+git20170215.476169c-10 (tar) [936 kB]
Get:3 http://172.17.4.1/private trixie-staging/main python-pyvcf 0.6.8+git20170215.476169c-10 (diff) [9948 B]
Fetched 948 kB in 0s (5266 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-pyvcf-HSVArZ/python-pyvcf-0.6.8+git20170215.476169c' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-pyvcf-HSVArZ' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-cutjeP/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-cutjeP/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-cutjeP/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-cutjeP/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-cutjeP/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-cutjeP/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-cutjeP/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-cutjeP/apt_archive ./ Packages [433 B]
Fetched 2109 B in 0s (4950 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libpam-cap netbase sensible-utils sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 57 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-cutjeP/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (67.8 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12856 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-all-dev, python3-setuptools, python3-pytest, python3-pysam
Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-all-dev, python3-setuptools, python3-pytest, python3-pysam
dpkg-deb: building package 'sbuild-build-depends-python-pyvcf-dummy' in '/<<BUILDDIR>>/resolver-cutjeP/apt_archive/sbuild-build-depends-python-pyvcf-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-python-pyvcf-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-cutjeP/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-cutjeP/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-cutjeP/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-cutjeP/apt_archive ./ Sources [547 B]
Get:5 copy:/<<BUILDDIR>>/resolver-cutjeP/apt_archive ./ Packages [621 B]
Fetched 2501 B in 0s (5553 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install python-pyvcf build dependencies (apt-based resolver)
------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libpam-cap netbase sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils bsdutils cython3
  debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
  gettext-base groff-base intltool-debian libarchive-zip-perl libblkid1
  libbrotli1 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libexpat1
  libexpat1-dev libfile-stripnondeterminism-perl libhts3 libhtscodecs2
  libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore libmagic-mgc
  libmagic1 libmount1 libnghttp2-14 libpipeline1 libpsl5 libpython3-all-dev
  libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev
  libpython3.11-minimal libpython3.11-stdlib librtmp1 libsmartcols1 libssh2-1
  libsub-override-perl libtool libuchardet0 libuuid1 libxml2 m4 man-db
  media-types mount po-debconf python3 python3-all python3-all-dev python3-dev
  python3-distutils python3-iniconfig python3-lib2to3 python3-minimal
  python3-packaging python3-pkg-resources python3-pluggy python3-pysam
  python3-pytest python3-setuptools python3.11 python3.11-dev
  python3.11-minimal util-linux util-linux-extra zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc cython-doc dh-make flit
  python3-build python3-installer python3-wheel gettext-doc libasprintf-dev
  libgettextpo-dev groff cryptsetup-bin libtool-doc gfortran
  | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser nfs-common
  libmail-box-perl python3-doc python3-tk python3-venv python-setuptools-doc
  python3.11-venv python3.11-doc binfmt-support dosfstools kbd
  util-linux-locales
Recommended packages:
  curl | wget | lynx ca-certificates libarchive-cpio-perl javascript-common
  publicsuffix libltdl-dev uuid-runtime libmail-sendmail-perl python3-pygments
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils cython3 debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
  gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1
  libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libexpat1
  libexpat1-dev libfile-stripnondeterminism-perl libhts3 libhtscodecs2
  libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore libmagic-mgc
  libmagic1 libnghttp2-14 libpipeline1 libpsl5 libpython3-all-dev
  libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev
  libpython3.11-minimal libpython3.11-stdlib librtmp1 libssh2-1
  libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types
  po-debconf python3 python3-all python3-all-dev python3-dev python3-distutils
  python3-iniconfig python3-lib2to3 python3-minimal python3-packaging
  python3-pkg-resources python3-pluggy python3-pysam python3-pytest
  python3-setuptools python3.11 python3.11-dev python3.11-minimal
  sbuild-build-depends-python-pyvcf-dummy zlib1g-dev
The following packages will be upgraded:
  bsdutils libblkid1 libmount1 libsmartcols1 libuuid1 mount util-linux
  util-linux-extra
8 upgraded, 72 newly installed, 0 to remove and 49 not upgraded.
Need to get 39.5 MB of archives.
After this operation, 164 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-cutjeP/apt_archive ./ sbuild-build-depends-python-pyvcf-dummy 0.invalid.0 [900 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf bsdutils armhf 1:2.39.2-6 [86.5 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf libsmartcols1 armhf 2.39.2-6 [102 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf util-linux-extra armhf 2.39.2-6 [135 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf util-linux armhf 2.39.2-6 [1110 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf mount armhf 2.39.2-6 [134 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-minimal armhf 3.11.6-3 [800 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf python3.11-minimal armhf 3.11.6-3 [1674 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf python3-minimal armhf 3.11.4-5 [26.2 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf media-types all 10.1.0 [26.9 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf libuuid1 armhf 2.39.2-6 [28.1 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-stdlib armhf 3.11.6-3 [1679 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf python3.11 armhf 3.11.6-3 [586 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf libpython3-stdlib armhf 3.11.4-5 [9200 B]
Get:16 http://172.17.4.1/private trixie-staging/main armhf python3 armhf 3.11.4-5 [26.2 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf libblkid1 armhf 2.39.2-6 [145 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf libmount1 armhf 2.39.2-6 [167 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.8-1 [65.5 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.2-6 [81.2 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-1 [1358 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-14 [157 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-14 [496 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf cython3 armhf 0.29.36-3 [1731 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.8 [82.1 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:39 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:41 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-14 [1203 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.8 [956 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf python3-lib2to3 all 3.11.5-1 [77.5 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf python3-distutils all 3.11.5-1 [131 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf python3-pkg-resources all 68.1.2-2 [241 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf python3-setuptools all 68.1.2-2 [468 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf dh-python all 6.20231204 [108 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.1.0-2 [280 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.58.0-1 [61.7 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-3 [195 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 8.4.0-2+rpi1 [358 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libexpat1-dev armhf 2.5.0-2 [130 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libhtscodecs2 armhf 1.5.2-1 [60.0 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf libhts3 armhf 1.18+ds-1 [380 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libjs-sphinxdoc all 7.2.6-2 [149 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libpython3.11 armhf 3.11.6-3 [1662 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-3 [901 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-dev armhf 3.11.6-3 [3271 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf libpython3-dev armhf 3.11.4-5 [9432 B]
Get:71 http://172.17.4.1/private trixie-staging/main armhf libpython3-all-dev armhf 3.11.4-5 [1068 B]
Get:72 http://172.17.4.1/private trixie-staging/main armhf python3-all armhf 3.11.4-5 [1060 B]
Get:73 http://172.17.4.1/private trixie-staging/main armhf python3.11-dev armhf 3.11.6-3 [508 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf python3-dev armhf 3.11.4-5 [26.2 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf python3-all-dev armhf 3.11.4-5 [1068 B]
Get:76 http://172.17.4.1/private trixie-staging/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get:77 http://172.17.4.1/private trixie-staging/main armhf python3-packaging all 23.2-1 [44.8 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf python3-pluggy all 1.3.0-1 [25.1 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf python3-pysam armhf 0.22.0+ds-1+rpi1 [2903 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf python3-pytest all 7.4.3-1 [239 kB]
debconf: delaying package configuration, since apt-utils is not installed
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+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.1+rpi1 g++-12_12.3.0-10+rpi1 g++-13_13.2.0-5+rpi1 gcc-12_12.3.0-10+rpi1 gcc-13_13.2.0-5+rpi1 libc6-dev_2.37-12+rpi2 libstdc++-12-dev_12.3.0-10+rpi1 libstdc++-13-dev_13.2.0-5+rpi1 libstdc++6_13.2.0-5+rpi1 linux-libc-dev_6.5.6-1+rpi1
Package versions: adduser_3.137 apt_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.2 bash_5.2.15-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.2-6 bsdutils_1:2.39.2-6 build-essential_12.10 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-10+rpi1 cpp-13_13.2.0-5+rpi1 cython3_0.29.36-3 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.8 debianutils_5.14 dh-autoreconf_20 dh-python_6.20231204 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dpkg_1.22.1+rpi1 dpkg-dev_1.22.1+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-10+rpi1 g++-13_13.2.0-5+rpi1 gcc_4:13.2.0-1+rpi1 gcc-12_12.3.0-10+rpi1 gcc-12-base_12.3.0-10+rpi1 gcc-13_13.2.0-5+rpi1 gcc-13-base_13.2.0-5+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-14 gettext-base_0.21-14 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-5 libacl1_2.3.1-3 libapt-pkg6.0_2.7.6 libarchive-zip-perl_1.68-1 libasan8_13.2.0-5+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-5+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libbinutils_2.41-6+rpi1 libblkid1_2.39.2-6 libbrotli1_1.1.0-2 libbz2-1.0_1.0.8-5+b2 libc-bin_2.37-12+rpi2 libc-dev-bin_2.37-12+rpi2 libc6_2.37-12+rpi2 libc6-dev_2.37-12+rpi2 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-4 libcap2-bin_1:2.66-4 libcc1-0_13.2.0-5+rpi1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41-6+rpi1 libctf0_2.41-6+rpi1 libcurl3-gnutls_8.4.0-2+rpi1 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.271 libdebhelper-perl_13.11.8 libdeflate0_1.18-1 libdpkg-perl_1.22.1+rpi1 libelf1_0.188-2.1+rpi1 libexpat1_2.5.0-2 libexpat1-dev_2.5.0-2 libext2fs2_1.47.0-2 libfakeroot_1.32.1-1 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.3.0-10+rpi1 libgcc-13-dev_13.2.0-5+rpi1 libgcc-s1_13.2.0-5+rpi1 libgcrypt20_1.10.2-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.1-4 libgomp1_13.2.0-5+rpi1 libgpg-error0_1.47-2 libgssapi-krb5-2_1.20.1-5 libhogweed6_3.9.1-2 libhts3_1.18+ds-1 libhtscodecs2_1.5.2-1 libicu72_72.1-4 libidn2-0_2.3.4-1 libisl23_0.26-3 libjansson4_2.14-2 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-sphinxdoc_7.2.6-2 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 libksba8_1.6.4-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1 liblz4-1_1.9.4-1+rpi1+b1 liblzma5_5.4.4-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmount1_2.39.2-6 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncursesw6_6.4+20231016-1 libnettle8_3.9.1-2 libnghttp2-14_1.58.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.0-5 libpam-cap_1:2.66-4 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.36_5.36.0-9 libpipeline1_1.5.7-1 libpsl5_0.21.2-1+b1 libpython3-all-dev_3.11.4-5 libpython3-dev_3.11.4-5 libpython3-stdlib_3.11.4-5 libpython3.11_3.11.6-3 libpython3.11-dev_3.11.6-3 libpython3.11-minimal_3.11.6-3 libpython3.11-stdlib_3.11.6-3 libreadline8_8.2-1.3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg1-3 libsasl2-modules-db_2.1.28+dfsg1-3 libseccomp2_2.5.4-1+rpi1+b1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol1_3.1-1 libsepol2_3.5-1 libsframe1_2.41-6+rpi1 libsmartcols1_2.39.2-6 libsqlite3-0_3.43.2-1 libss2_1.47.0-2 libssh2-1_1.11.0-3 libssl1.1_1.1.1o-1 libssl3_3.0.11-1 libstdc++-12-dev_12.3.0-10+rpi1 libstdc++-13-dev_13.2.0-5+rpi1 libstdc++6_13.2.0-5+rpi1 libsub-override-perl_0.09-4 libsystemd0_254.5-1+rpi1 libtasn1-6_4.19.0-3 libtext-glob-perl_0.11-3 libtinfo6_6.4+20231016-1 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-7 libubsan1_13.2.0-5+rpi1 libuchardet0_0.0.8-1 libudev1_254.5-1+rpi1 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.2-6 libxml2_2.9.14+dfsg-1.3 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.6-1+rpi1 login_1:4.13+dfsg1-3 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-1 mawk_1.3.4.20230808-1 media-types_10.1.0 mount_2.39.2-6 nano_7.2-1 ncurses-base_6.4+20231016-1 ncurses-bin_6.4+20231016-1 netbase_6.4 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.36.0-9 perl-base_5.36.0-9 perl-modules-5.36_5.36.0-9 pinentry-curses_1.2.1-1 po-debconf_1.0.21+nmu1 python3_3.11.4-5 python3-all_3.11.4-5 python3-all-dev_3.11.4-5 python3-dev_3.11.4-5 python3-distutils_3.11.5-1 python3-iniconfig_1.1.1-2 python3-lib2to3_3.11.5-1 python3-minimal_3.11.4-5 python3-packaging_23.2-1 python3-pkg-resources_68.1.2-2 python3-pluggy_1.3.0-1 python3-pysam_0.22.0+ds-1+rpi1 python3-pytest_7.4.3-1 python3-setuptools_68.1.2-2 python3.11_3.11.6-3 python3.11-dev_3.11.6-3 python3.11-minimal_3.11.6-3 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-pyvcf-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sgml-base_1.31 sysvinit-utils_3.08-3 tar_1.34+dfsg-1.2 tzdata_2023c-10 usrmerge_38 util-linux_2.39.2-6 util-linux-extra_2.39.2-6 xz-utils_5.4.4-0.1 zlib1g_1:1.2.13.dfsg-3 zlib1g-dev_1:1.2.13.dfsg-3

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: Signature made Tue Dec  5 15:26:56 2023 UTC
gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv:                issuer "emollier@emlwks999.eu"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./python-pyvcf_0.6.8+git20170215.476169c-10.dsc: no acceptable signature found
dpkg-source: info: extracting python-pyvcf in /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c
dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz
dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c-10.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix-setuptools.patch
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying quitechar.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-5b35cda3-8429-4028-8167-2fd481d0cacf
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package python-pyvcf
dpkg-buildpackage: info: source version 0.6.8+git20170215.476169c-10
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:310: python3.11 setup.py clean 
running clean
removing '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary-arch
dh binary-arch --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:310: python3.11 setup.py config 
running config
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:310: /usr/bin/python3 setup.py build 
running build
running build_py
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf
copying vcf/__init__.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf
copying vcf/filters.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf
copying vcf/model.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf
copying vcf/sample_filter.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf
copying vcf/utils.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf
copying vcf/parser.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/__init__.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/prof.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/test_vcf.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
running egg_info
creating PyVCF.egg-info
writing PyVCF.egg-info/PKG-INFO
writing dependency_links to PyVCF.egg-info/dependency_links.txt
writing entry points to PyVCF.egg-info/entry_points.txt
writing requirements to PyVCF.egg-info/requires.txt
writing top-level names to PyVCF.egg-info/top_level.txt
writing manifest file 'PyVCF.egg-info/SOURCES.txt'
reading manifest file 'PyVCF.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'PyVCF.egg-info/SOURCES.txt'
copying vcf/cparse.pyx -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf
copying vcf/test/1kg.sites.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/1kg.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/FT.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/bad-info-character.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/bcftools.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/contig_idonly.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/example-4.0.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/example-4.1-bnd.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/example-4.1-info-multiple-values.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/example-4.1-ploidy.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/example-4.1-sv.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/example-4.1.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/example-4.2.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/freebayes.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/gatk.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/gatk_26_meta.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/gonl.chr20.release4.gtc.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/info-type-character.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/issue-140-file1.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/issue-140-file2.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/issue-140-file3.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/issue-16.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/issue-201.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/issue-201.vcf.gz.tbi -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/issue-214.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/issue-254.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/issue_49.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/metadata-whitespace.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/mixed-filtering.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/null_genotype_mono.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/parse-meta-line.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/samples-space.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/samtools.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/strelka.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/string_as_flag.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/tb.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/tb.vcf.gz.tbi -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/uncalled_genotypes.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/walk_left.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
copying vcf/test/walk_refcall.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test
running build_ext
cythoning vcf/cparse.pyx to vcf/cparse.c
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/vcf/cparse.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
warning: vcf/cparse.pyx:29:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
warning: vcf/cparse.pyx:29:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
warning: vcf/cparse.pyx:29:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
warning: vcf/cparse.pyx:29:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
building 'vcf.cparse' extension
creating build
creating build/temp.linux-armv7l-cpython-311
creating build/temp.linux-armv7l-cpython-311/vcf
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c vcf/cparse.c -o build/temp.linux-armv7l-cpython-311/vcf/cparse.o
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/vcf/cparse.o -L/usr/lib/arm-linux-gnueabihf -o /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/cparse.cpython-311-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.11
copying and adjusting scripts/vcf_melt -> build/scripts-3.11
copying and adjusting scripts/vcf_filter.py -> build/scripts-3.11
copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-3.11
changing mode of build/scripts-3.11/vcf_melt from 644 to 755
changing mode of build/scripts-3.11/vcf_filter.py from 644 to 755
changing mode of build/scripts-3.11/vcf_sample_filter.py from 644 to 755
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild pybuild:314: mkdir /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf; cp -r /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/vcf/test /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/
mkdir: cannot create directory '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf': File exists
I: pybuild base:310: cd /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build; python3.11 -m pytest 
============================= test session starts ==============================
platform linux -- Python 3.11.6, pytest-7.4.3, pluggy-1.3.0
rootdir: /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c
collected 104 items

vcf/test/test_vcf.py ................................................... [ 49%]
........................................ss.ss........                    [100%]

=============================== warnings summary ===============================
vcf/parser.py:278
  /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/parser.py:278: DeprecationWarning: invalid escape sequence '\['
    self._alt_pattern = re.compile('[\[\]]')

vcf/parser.py:536
  /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/parser.py:536: DeprecationWarning: invalid escape sequence '\['
    remoteOrientation = (re.search('\[', str) is not None)

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================== 100 passed, 4 skipped, 2 warnings in 9.79s ==================
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=pybuild
   dh_prep -a -O--buildsystem=pybuild
   dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:310: /usr/bin/python3 setup.py install --root /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf 
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
        ********************************************************************************

!!
  self.initialize_options()
running build
running build_py
running egg_info
writing PyVCF.egg-info/PKG-INFO
writing dependency_links to PyVCF.egg-info/dependency_links.txt
writing entry points to PyVCF.egg-info/entry_points.txt
writing requirements to PyVCF.egg-info/requires.txt
writing top-level names to PyVCF.egg-info/top_level.txt
reading manifest file 'PyVCF.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'PyVCF.egg-info/SOURCES.txt'
running build_ext
skipping 'vcf/cparse.c' Cython extension (up-to-date)
running build_scripts
running install_lib
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/__init__.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/filters.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/model.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/sample_filter.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/utils.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/parser.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/__init__.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/prof.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/test_vcf.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/1kg.sites.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/1kg.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/FT.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/bad-info-character.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/bcftools.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/contig_idonly.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/example-4.0.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/example-4.1-bnd.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/example-4.1-info-multiple-values.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/example-4.1-ploidy.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/example-4.1-sv.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/example-4.1.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/example-4.2.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/freebayes.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/gatk.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/gatk_26_meta.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/info-type-character.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/issue-140-file1.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/issue-140-file2.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/issue-140-file3.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/issue-16.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/issue-201.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/issue-201.vcf.gz.tbi -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/issue-214.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/issue-254.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/issue_49.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/metadata-whitespace.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/mixed-filtering.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/null_genotype_mono.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/parse-meta-line.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/samples-space.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/samtools.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/strelka.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/string_as_flag.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/tb.vcf.gz -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/tb.vcf.gz.tbi -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/uncalled_genotypes.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/walk_left.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/walk_refcall.vcf -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/README.md -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/__pycache__/__init__.cpython-311.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/test/__pycache__/test_vcf.cpython-311-pytest-7.4.3.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/cparse.pyx -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/cparse.cpython-311-arm-linux-gnueabihf.so -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/__pycache__/__init__.cpython-311.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/__pycache__/parser.cpython-311.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/__pycache__/model.cpython-311.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/__pycache__/filters.cpython-311.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/__pycache__/sample_filter.cpython-311.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/__pycache__
copying /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.11_vcf/build/vcf/__pycache__/utils.cpython-311.pyc -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/__pycache__
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/filters.py to filters.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/model.py to model.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/sample_filter.py to sample_filter.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/utils.py to utils.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/parser.py to parser.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test/prof.py to prof.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/vcf/test/test_vcf.py to test_vcf.cpython-311.pyc
running install_egg_info
Copying PyVCF.egg-info to /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.11/dist-packages/PyVCF-0.6.8.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin
copying build/scripts-3.11/vcf_melt -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin
copying build/scripts-3.11/vcf_filter.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin
copying build/scripts-3.11/vcf_sample_filter.py -> /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin
changing mode of /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_melt to 755
changing mode of /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_filter.py to 755
changing mode of /<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_sample_filter.py to 755
   debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c'
dh_install
# move testdata to separate dir
mkdir -p debian/python-pyvcf-examples/usr/share/doc/python3-vcf
mv `find debian/python3-vcf -type d -name test | head -n 1` debian/python-pyvcf-examples/usr/share/doc/python3-vcf
find debian/python3-vcf -type d -name test | xargs rm -rf
find debian/python-pyvcf-examples/usr/share/doc/python3-vcf -name "__pycache__" | xargs rm -rf
mkdir -p debian/pyvcf/usr
mv debian/python3-vcf/usr/bin debian/pyvcf/usr
# strip .py extension
for py in debian/pyvcf/usr/bin/*.py ; do \
    mv ${py} debian/pyvcf/usr/bin/`basename ${py} .py` ; \
done
make[1]: Leaving directory '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c'
   dh_installdocs -a -O--buildsystem=pybuild
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_installman -a -O--buildsystem=pybuild
   debian/rules override_dh_python3
make[1]: Entering directory '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c'
dh_python3 --verbose
D: dh_python3 dh_python3:179: version: 6.20231204
D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '--verbose']
D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=None)
D: dh_python3 dh_python3:182: supported Python versions: 3.11 (default=3.11)
D: dh_python3 debhelper:149: skipping package: python-pyvcf-examples
D: dh_python3 debhelper:183: source=python-pyvcf, binary packages=['python3-vcf', 'pyvcf']
D: dh_python3 dh_python3:204: processing package python3-vcf...
D: dh_python3 fs:50: moving files from debian/python3-vcf/usr/lib/python3.11/dist-packages to debian/python3-vcf/usr/lib/python3/dist-packages/
D: dh_python3 fs:348: package python3-vcf details = {'requires.txt': {'debian/python3-vcf/usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/requires.txt'}, 'egg-info': {'debian/python3-vcf/usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.11')}, 'ext_no_version': set()}
D: dh_python3 depends:117: generating dependencies for package python3-vcf
D: dh_python3 pydist:173: trying to find dependency for setuptools (python=None)
D: dh_python3 pydist:207: dependency: module seems to be installed
D: dh_python3 pydist:270: dependency: included in build-deps
D: dh_python3 depends:281: D={'python3:any', 'python3 (<< 3.12)', 'python3-pkg-resources', 'python3 (>= 3.11~)'}; R=[]; S=[]; E=[], B=[]; RT=[]
D: dh_python3 dh_python3:204: processing package pyvcf...
D: dh_python3 fs:348: package pyvcf details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3, /usr/bin/python3}, 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()}
D: dh_python3 depends:117: generating dependencies for package pyvcf
D: dh_python3 depends:281: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[]
make[1]: Leaving directory '/<<BUILDDIR>>/python-pyvcf-0.6.8+git20170215.476169c'
   dh_installsystemduser -a -O--buildsystem=pybuild
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_strip_nondeterminism -a -O--buildsystem=pybuild
   dh_compress -a -O--buildsystem=pybuild
   dh_fixperms -a -O--buildsystem=pybuild
   dh_missing -a -O--buildsystem=pybuild
   dh_dwz -a -O--buildsystem=pybuild
   dh_strip -a -O--buildsystem=pybuild
   dh_makeshlibs -a -O--buildsystem=pybuild
   dh_shlibdeps -a -O--buildsystem=pybuild
   dh_installdeb -a -O--buildsystem=pybuild
   dh_gencontrol -a -O--buildsystem=pybuild
   dh_md5sums -a -O--buildsystem=pybuild
   dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-vcf' in '../python3-vcf_0.6.8+git20170215.476169c-10_armhf.deb'.
dpkg-deb: building package 'python3-vcf-dbgsym' in '../python3-vcf-dbgsym_0.6.8+git20170215.476169c-10_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../python-pyvcf_0.6.8+git20170215.476169c-10_armhf.buildinfo
 dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../python-pyvcf_0.6.8+git20170215.476169c-10_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-12-08T05:38:52Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


python-pyvcf_0.6.8+git20170215.476169c-10_armhf.changes:
--------------------------------------------------------

Format: 1.8
Date: Mon, 04 Dec 2023 20:55:29 +0700
Source: python-pyvcf
Binary: python3-vcf python3-vcf-dbgsym
Architecture: armhf
Version: 0.6.8+git20170215.476169c-10
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Lance Lin <lq27267@gmail.com>
Description:
 python3-vcf - Variant Call Format (VCF) parser for Python 3
Closes: 1046140
Changes:
 python-pyvcf (0.6.8+git20170215.476169c-10) unstable; urgency=medium
 .
   * Team upload.
   * Packaging update
   * Standards-Version: 4.6.2 (routine-update)
   * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
   * Set upstream metadata fields: Repository-Browse.
   * d/clean: Remove autogenerated file, vcf/cparse.c (Closes: #1046140)
   * d/control: Replace autopkgtest-pkg-python with autopkgtest-pkg-pybuild
   * d/rules: Copy tests to build directory
   * d/tests: Removed, run upstream tests with autopkgtest-pkg-pybuild
   * d/python-pyvcf-examples.lintian-overrides: Removed, override unused
Checksums-Sha1:
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 aaa081a9dccc9a34c47ea12069e6d53c4db71a57 84480 python3-vcf-dbgsym_0.6.8+git20170215.476169c-10_armhf.deb
 f31ed06de7b55f043bad4b2788c72444eec37d40 39940 python3-vcf_0.6.8+git20170215.476169c-10_armhf.deb
Checksums-Sha256:
 0992e6805d15b5e770f6602791feb1b0eeaa7d43487ba5121802c594f82886b0 7085 python-pyvcf_0.6.8+git20170215.476169c-10_armhf.buildinfo
 7c94e31114a15e9a44fcba4944ae268d9faf251c7ebcddac7714d871983c1e0a 84480 python3-vcf-dbgsym_0.6.8+git20170215.476169c-10_armhf.deb
 7513df932556795330ba9806f877e2bb64cd75a5489cae2491fef41bc5199082 39940 python3-vcf_0.6.8+git20170215.476169c-10_armhf.deb
Files:
 3d20e29b157d653ebd253773cd62461b 7085 python optional python-pyvcf_0.6.8+git20170215.476169c-10_armhf.buildinfo
 8b4491c67699fa6f5a5d14fe87153ea8 84480 debug optional python3-vcf-dbgsym_0.6.8+git20170215.476169c-10_armhf.deb
 f5ab16c86f34e57b352e2584ac788829 39940 python optional python3-vcf_0.6.8+git20170215.476169c-10_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


python3-vcf-dbgsym_0.6.8+git20170215.476169c-10_armhf.deb
---------------------------------------------------------

 new Debian package, version 2.0.
 size 84480 bytes: control archive=556 bytes.
     429 bytes,    12 lines      control
     106 bytes,     1 lines      md5sums
 Package: python3-vcf-dbgsym
 Source: python-pyvcf
 Version: 0.6.8+git20170215.476169c-10
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 101
 Depends: python3-vcf (= 0.6.8+git20170215.476169c-10)
 Section: debug
 Priority: optional
 Description: debug symbols for python3-vcf
 Build-Ids: 1fb0022b172bbad35152101bf6271ad86cdcccf9

drwxr-xr-x root/root         0 2023-12-04 13:55 ./
drwxr-xr-x root/root         0 2023-12-04 13:55 ./usr/
drwxr-xr-x root/root         0 2023-12-04 13:55 ./usr/lib/
drwxr-xr-x root/root         0 2023-12-04 13:55 ./usr/lib/debug/
drwxr-xr-x root/root         0 2023-12-04 13:55 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2023-12-04 13:55 ./usr/lib/debug/.build-id/1f/
-rw-r--r-- root/root     92716 2023-12-04 13:55 ./usr/lib/debug/.build-id/1f/b0022b172bbad35152101bf6271ad86cdcccf9.debug
drwxr-xr-x root/root         0 2023-12-04 13:55 ./usr/share/
drwxr-xr-x root/root         0 2023-12-04 13:55 ./usr/share/doc/
lrwxrwxrwx root/root         0 2023-12-04 13:55 ./usr/share/doc/python3-vcf-dbgsym -> python3-vcf


python3-vcf_0.6.8+git20170215.476169c-10_armhf.deb
--------------------------------------------------

 new Debian package, version 2.0.
 size 39940 bytes: control archive=1836 bytes.
    1274 bytes,    27 lines      control
    1387 bytes,    16 lines      md5sums
     269 bytes,    12 lines   *  postinst             #!/bin/sh
     382 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: python3-vcf
 Source: python-pyvcf
 Version: 0.6.8+git20170215.476169c-10
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 139
 Depends: libc6 (>= 2.4), python3 (<< 3.12), python3 (>= 3.11~), python3-pkg-resources, python3:any, python3-pysam
 Provides: python3-pyvcf
 Section: python
 Priority: optional
 Homepage: https://github.com/jamescasbon/PyVCF
 Description: Variant Call Format (VCF) parser for Python 3
  The Variant Call Format (VCF) specifies the format of a text file used
  in bioinformatics for storing gene sequence variations. The format has
  been developed with the advent of large-scale genotyping and DNA
  sequencing projects, such as the 1000 Genomes Project.
  .
  The intent of this module is to mimic the ``csv`` module in the Python
  stdlib, as opposed to more flexible serialization formats like JSON or
  YAML. ``vcf`` will attempt to parse the content of each record based on
  the data types specified in the meta-information lines -- specifically
  the ##INFO and
  ##FORMAT lines. If these lines are missing or incomplete, it will check
  against the reserved types mentioned in the spec. Failing that, it will
  just return strings.
  .
  This package provides the Python 3 modules.

drwxr-xr-x root/root         0 2023-12-04 13:55 ./
drwxr-xr-x root/root         0 2023-12-04 13:55 ./usr/
drwxr-xr-x root/root         0 2023-12-04 13:55 ./usr/lib/
drwxr-xr-x root/root         0 2023-12-04 13:55 ./usr/lib/python3/
drwxr-xr-x root/root         0 2023-12-04 13:55 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2023-12-04 13:55 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/
-rw-r--r-- root/root      1041 2023-12-04 13:55 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2023-12-04 13:55 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/dependency_links.txt
-rw-r--r-- root/root       231 2023-12-04 13:55 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/entry_points.txt
-rw-r--r-- root/root         0 2023-12-04 13:55 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/requires.txt
-rw-r--r-- root/root         4 2023-12-04 13:55 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/top_level.txt
drwxr-xr-x root/root         0 2023-12-04 13:55 ./usr/lib/python3/dist-packages/vcf/
-rw-r--r-- root/root       384 2017-02-15 13:48 ./usr/lib/python3/dist-packages/vcf/__init__.py
-rw-r--r-- root/root     43624 2023-12-04 13:55 ./usr/lib/python3/dist-packages/vcf/cparse.cpython-311-arm-linux-gnueabihf.so
-rw-r--r-- root/root      2821 2017-02-15 13:48 ./usr/lib/python3/dist-packages/vcf/cparse.pyx
-rw-r--r-- root/root      6240 2017-02-15 13:48 ./usr/lib/python3/dist-packages/vcf/filters.py
-rw-r--r-- root/root     24390 2023-12-04 13:55 ./usr/lib/python3/dist-packages/vcf/model.py
-rw-r--r-- root/root     28043 2023-12-04 13:55 ./usr/lib/python3/dist-packages/vcf/parser.py
-rw-r--r-- root/root      4023 2023-12-04 13:55 ./usr/lib/python3/dist-packages/vcf/sample_filter.py
-rw-r--r-- root/root      3278 2023-12-04 13:55 ./usr/lib/python3/dist-packages/vcf/utils.py
drwxr-xr-x root/root         0 2023-12-04 13:55 ./usr/share/
drwxr-xr-x root/root         0 2023-12-04 13:55 ./usr/share/doc/
drwxr-xr-x root/root         0 2023-12-04 13:55 ./usr/share/doc/python3-vcf/
-rw-r--r-- root/root      1172 2023-12-04 13:55 ./usr/share/doc/python3-vcf/changelog.Debian.gz
-rw-r--r-- root/root      2326 2017-02-15 13:48 ./usr/share/doc/python3-vcf/changelog.gz
-rw-r--r-- root/root      1904 2023-12-04 13:55 ./usr/share/doc/python3-vcf/copyright


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 6064
Build-Time: 35
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 549
Job: python-pyvcf_0.6.8+git20170215.476169c-10
Machine Architecture: armhf
Package: python-pyvcf
Package-Time: 607
Source-Version: 0.6.8+git20170215.476169c-10
Space: 6064
Status: successful
Version: 0.6.8+git20170215.476169c-10
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Finished at 2023-12-08T05:38:52Z
Build needed 00:10:07, 6064k disk space
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Build log for python-pyvcf (0.6.8+git20170215.476169c-10) on armhf
