Raspbian Package Auto-Building

python-pybedtools → 0.9.0-4 → armhf → 2023-01-08 09:17:35

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02

+==============================================================================+
| python-pybedtools 0.9.0-4 (armhf)            Sun, 08 Jan 2023 08:13:59 +0000 |
+==============================================================================+

Package: python-pybedtools
Version: 0.9.0-4
Source Version: 0.9.0-4
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-57197704-ef91-4c13-a224-a57f51a76835' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.5 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.3 MB]
Fetched 27.9 MB in 28s (987 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'python-pybedtools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-pybedtools.git
Please use:
git clone https://salsa.debian.org/med-team/python-pybedtools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 12.5 MB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main python-pybedtools 0.9.0-4 (dsc) [2637 B]
Get:2 http://172.17.4.1/private bookworm-staging/main python-pybedtools 0.9.0-4 (tar) [12.5 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main python-pybedtools 0.9.0-4 (diff) [29.5 kB]
Fetched 12.5 MB in 1s (11.5 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-pybedtools-8B4VsL/python-pybedtools-0.9.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-pybedtools-8B4VsL' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-lw8mj6/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-lw8mj6/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-lw8mj6/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-lw8mj6/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-lw8mj6/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-lw8mj6/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-lw8mj6/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-lw8mj6/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2605 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libldap-common libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 37 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-lw8mj6/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (22.9 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13212 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-python, bedtools, cython3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-pytest, python3-numpy, python3-numpydoc, python3-pandas, python3-psutil, python3-yaml, python3-tk, python3-sphinx, r-base-core, zlib1g-dev
Filtered Build-Depends: debhelper-compat (= 13), dh-python, bedtools, cython3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-pytest, python3-numpy, python3-numpydoc, python3-pandas, python3-psutil, python3-yaml, python3-tk, python3-sphinx, r-base-core, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-python-pybedtools-dummy' in '/<<BUILDDIR>>/resolver-lw8mj6/apt_archive/sbuild-build-depends-python-pybedtools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-python-pybedtools-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-lw8mj6/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-lw8mj6/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-lw8mj6/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-lw8mj6/apt_archive ./ Sources [598 B]
Get:5 copy:/<<BUILDDIR>>/resolver-lw8mj6/apt_archive ./ Packages [678 B]
Fetched 2609 B in 1s (3582 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install python-pybedtools build dependencies (apt-based resolver)
-----------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libldap-common libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bedtools blt bsdextrautils
  ca-certificates cython3 debhelper dh-autoreconf dh-python
  dh-strip-nondeterminism docutils-common dwz file fontconfig
  fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base
  groff-base intltool-debian libarchive-zip-perl libblas3 libbrotli1 libbsd0
  libcairo2 libcurl3-gnutls libcurl4 libdatrie1 libdebhelper-perl libdeflate0
  libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
  libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0
  libgraphite2-3 libharfbuzz0b libhts3 libhtscodecs2 libice6 libicu72
  libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui
  libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblbfgsb0
  liblcms2-2 liblerc4 libmagic-mgc libmagic1 libmd0 libmpdec3 libnghttp2-14
  libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
  libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpng16-16 libpsl5
  libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10
  libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.11
  libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0
  libraqm0 librtmp1 libsm6 libssh2-1 libsub-override-perl libtcl8.6
  libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp7
  libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0
  libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1
  libxslt1.1 libxss1 libxt6 libyaml-0-2 m4 man-db media-types openssl
  po-debconf python-babel-localedata python-matplotlib-data python3
  python3-alabaster python3-all python3-all-dev python3-appdirs python3-attr
  python3-babel python3-brotli python3-certifi python3-chardet
  python3-charset-normalizer python3-contourpy python3-cycler python3-dateutil
  python3-decorator python3-dev python3-distutils python3-docutils
  python3-fonttools python3-fs python3-idna python3-imagesize
  python3-iniconfig python3-jinja2 python3-kiwisolver python3-lib2to3
  python3-lxml python3-lz4 python3-markupsafe python3-matplotlib
  python3-minimal python3-more-itertools python3-mpmath python3-numpy
  python3-numpydoc python3-packaging python3-pandas python3-pandas-lib
  python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy
  python3-psutil python3-py python3-pygments python3-pyparsing python3-pysam
  python3-pytest python3-requests python3-roman python3-scipy
  python3-setuptools python3-six python3-snowballstemmer python3-sphinx
  python3-sympy python3-tk python3-tomli python3-tz python3-ufolib2
  python3-unicodedata2 python3-urllib3 python3-yaml python3.10 python3.10-dev
  python3.10-minimal python3.11 python3.11-dev python3.11-minimal r-base-core
  sphinx-common tk8.6-blt2.5 ucf unicode-data unzip x11-common xdg-utils
  xml-core zip zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc blt-demo cython-doc dh-make flit
  python3-build python3-installer gettext-doc libasprintf-dev libgettextpo-dev
  groff low-memory-monitor libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6
  libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
  www-browser libmail-box-perl python3-doc python3-venv python-attr-doc
  python-cycler-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine
  texlive-lang-french texlive-latex-base texlive-latex-recommended
  python-jinja2-doc python-lxml-doc cm-super-minimal dvipng ffmpeg
  fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common
  python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5
  python3-sip python3-tornado texlive-extra-utils texlive-latex-extra
  python-mpmath-doc python3-gmpy2 gfortran python-numpy-doc python-pandas-doc
  python3-statsmodels python-pil-doc python-psutil-doc subversion
  python-pygments-doc ttf-bitstream-vera python-pyparsing-doc
  python3-cryptography python3-openssl python3-socks python-requests-doc
  python-scipy-doc python-setuptools-doc python3-stemmer fonts-freefont-otf
  imagemagick-6.q16 latexmk libjs-mathjax python3-sphinx-rtd-theme sphinx-doc
  tex-gyre texlive-fonts-recommended texlive-plain-generic texlive-fonts-extra
  python-sympy-doc tix python3-tk-dbg python3.10-venv python3.10-doc
  binfmt-support python3.11-venv python3.11-doc elpa-ess r-doc-info
  | r-doc-pdf r-mathlib r-base-html
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs javascript-common libjson-xs-perl publicsuffix libltdl-dev
  libmail-sendmail-perl python3-bs4 python3-html5lib python3-bottleneck
  python3-numexpr python3-odf python3-openpyxl python3-xlwt python3-tables
  python3-olefile isympy-common r-recommended r-base-dev r-doc-html
  libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
  x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bedtools blt bsdextrautils
  ca-certificates cython3 debhelper dh-autoreconf dh-python
  dh-strip-nondeterminism docutils-common dwz file fontconfig
  fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base
  groff-base intltool-debian libarchive-zip-perl libblas3 libbrotli1 libbsd0
  libcairo2 libcurl3-gnutls libcurl4 libdatrie1 libdebhelper-perl libdeflate0
  libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
  libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0
  libgraphite2-3 libharfbuzz0b libhts3 libhtscodecs2 libice6 libicu72
  libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui
  libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblbfgsb0
  liblcms2-2 liblerc4 libmagic-mgc libmagic1 libmd0 libmpdec3 libnghttp2-14
  libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
  libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpng16-16 libpsl5
  libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10
  libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.11
  libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0
  libraqm0 librtmp1 libsm6 libssh2-1 libsub-override-perl libtcl8.6
  libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp7
  libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0
  libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1
  libxslt1.1 libxss1 libxt6 libyaml-0-2 m4 man-db media-types openssl
  po-debconf python-babel-localedata python-matplotlib-data python3
  python3-alabaster python3-all python3-all-dev python3-appdirs python3-attr
  python3-babel python3-brotli python3-certifi python3-chardet
  python3-charset-normalizer python3-contourpy python3-cycler python3-dateutil
  python3-decorator python3-dev python3-distutils python3-docutils
  python3-fonttools python3-fs python3-idna python3-imagesize
  python3-iniconfig python3-jinja2 python3-kiwisolver python3-lib2to3
  python3-lxml python3-lz4 python3-markupsafe python3-matplotlib
  python3-minimal python3-more-itertools python3-mpmath python3-numpy
  python3-numpydoc python3-packaging python3-pandas python3-pandas-lib
  python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy
  python3-psutil python3-py python3-pygments python3-pyparsing python3-pysam
  python3-pytest python3-requests python3-roman python3-scipy
  python3-setuptools python3-six python3-snowballstemmer python3-sphinx
  python3-sympy python3-tk python3-tomli python3-tz python3-ufolib2
  python3-unicodedata2 python3-urllib3 python3-yaml python3.10 python3.10-dev
  python3.10-minimal python3.11 python3.11-dev python3.11-minimal r-base-core
  sbuild-build-depends-python-pybedtools-dummy sphinx-common tk8.6-blt2.5 ucf
  unicode-data unzip x11-common xdg-utils xml-core zip zlib1g-dev
0 upgraded, 206 newly installed, 0 to remove and 37 not upgraded.
Need to get 150 MB of archives.
After this operation, 592 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-lw8mj6/apt_archive ./ sbuild-build-depends-python-pybedtools-dummy 0.invalid.0 [964 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-minimal armhf 3.10.9-1 [769 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.9-1 [1477 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.10.6-3 [25.5 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf media-types all 8.0.0 [33.4 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.9-1 [1597 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.9-1 [509 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.10.6-3 [8588 B]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.10.6-3 [25.2 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-minimal armhf 3.11.1-2 [796 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf python3.11-minimal armhf 3.11.1-2 [1678 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-4 [78.8 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.1-1 [1341 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.7-1 [1349 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-10 [156 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-10 [495 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf bedtools armhf 2.30.0+dfsg-2 [516 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-1 [906 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.39-2 [258 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [352 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config armhf 2.13.1-4.5 [281 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.5 [330 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-1 [112 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.8.3-3 [292 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.8.3-3 [687 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.13-1 [680 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [477 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf cython3 armhf 0.29.32-2 [1218 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.4 [81.2 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-2 [19.4 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-2 [8556 B]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1 [570 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-10 [1203 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.4 [942 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.10.8-1 [77.3 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.10.8-1 [139 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220819+rpi1 [114 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf docutils-common all 0.17.1+dfsg-3 [113 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.5 [416 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf fonts-lyx all 2.3.7-1 [186 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-7 [482 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.51.0-1 [60.5 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.87.0-1 [327 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.87.0-1 [332 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.5.0-1 [130 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-10+rpi1 [238 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.74.4-1 [1204 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 6.0.0-1 [1886 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libhtscodecs2 armhf 1.3.0-4 [59.5 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libhts3 armhf 1.16+ds-3 [367 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libimagequant0 armhf 2.17.0-1 [28.0 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 5.3.0-2 [130 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libjson-perl all 4.10000-1 [87.5 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-11 [24.3 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.13.1-1 [125 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-2 [133 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libopenjp2-7 armhf 2.5.0-1 [165 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.50.12+ds-1 [186 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.50.12+ds-1 [40.5 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.50.12+ds-1 [30.1 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10 armhf 3.10.9-1 [1462 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [901 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-dev armhf 3.10.9-1 [2926 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.10.6-3 [8820 B]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-stdlib armhf 3.11.1-2 [1622 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11 armhf 3.11.1-2 [1666 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-dev armhf 3.11.1-2 [3375 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.10.6-3 [1072 B]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libqhull-r8.0 armhf 2020.2-5 [221 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libraqm0 armhf 0.7.0-4 [9388 B]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2+b1 [237 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-6 [278 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libwebpdemux2 armhf 1.2.2-2+b1 [95.5 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libwebpmux3 armhf 1.2.2-2+b1 [103 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf libxslt1.1 armhf 1.1.35-1 [221 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.1-1 [159 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libyaml-0-2 armhf 0.2.5-1 [44.6 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf python-babel-localedata all 2.10.3-1 [5615 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf python-matplotlib-data all 3.6.2-3 [2736 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf python3-alabaster all 0.7.12-1 [20.8 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf python3.11 armhf 3.11.1-2 [567 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.10.6-3 [1064 B]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf python3.10-dev armhf 3.10.9-1 [512 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.10.6-3 [26.0 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf python3.11-dev armhf 3.11.1-2 [618 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf python3-all-dev armhf 3.10.6-3 [1076 B]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf python3-appdirs all 1.4.4-3 [13.0 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf python3-attr all 22.2.0-1 [65.4 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 65.5.0-1.1 [278 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf python3-tz all 2022.7-1 [32.1 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf python3-babel all 2.10.3-1 [103 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf python3-brotli armhf 1.0.9-2+b2 [278 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf python3-certifi all 2022.9.24-1 [153 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf python3-chardet all 5.1.0+dfsg-2 [110 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf python3-charset-normalizer all 3.0.1-2 [49.3 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.23.5-2+b1 [5285 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf python3-contourpy armhf 1.0.6-2+rpi1 [159 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf python3-cycler all 0.11.0-1 [8020 B]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf python3-six all 1.16.0-4 [17.5 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf python3-dateutil all 2.8.2-1 [78.2 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf python3-decorator all 5.1.1-3 [14.9 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf python3-roman all 3.3-3 [9880 B]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf python3-docutils all 0.17.1+dfsg-3 [380 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf python3-scipy armhf 1.8.1-14+rpi1 [12.9 MB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf python3-mpmath all 1.2.1-2 [418 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf python3-sympy all 1.11.1-1 [4358 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf python3-fs all 2.4.16-2 [95.2 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf python3-lxml armhf 4.9.2-1 [1528 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf python3-lz4 armhf 4.0.2+dfsg-1 [23.9 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf python3-unicodedata2 armhf 14.0.0+ds2-1 [298 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf unicode-data all 15.0.0-1 [7984 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf python3-fonttools armhf 4.37.4-1 [983 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf python3-idna all 3.3-1 [39.4 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf python3-imagesize all 1.4.1-1 [6688 B]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf python3-markupsafe armhf 2.1.1-1 [13.6 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf python3-jinja2 all 3.0.3-2 [121 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf python3-kiwisolver armhf 1.4.4-1 [52.3 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf python3-pil armhf 9.3.0-1 [433 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf python3-tk armhf 3.10.8-1 [101 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf python3-pil.imagetk armhf 9.3.0-1 [73.1 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf python3-pyparsing all 3.0.9-1 [138 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf python3-packaging all 22.0-2 [32.2 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf python3-matplotlib armhf 3.6.2-3 [7451 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf python3-more-itertools all 8.10.0-2 [53.0 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf sphinx-common all 5.3.0-2 [652 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf python3-pygments all 2.13.0+dfsg-1 [767 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf python3-urllib3 all 1.26.12-1 [117 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf python3-requests all 2.28.1+dfsg-1 [67.9 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf python3-snowballstemmer all 2.2.0-2 [57.8 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf python3-sphinx all 5.3.0-2 [549 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf python3-numpydoc all 1.5.0-1 [43.0 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas-lib armhf 1.3.5+dfsg-6 [2906 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas all 1.3.5+dfsg-6 [2646 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf python3-pluggy all 1.0.0+repack-1 [19.7 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf python3-psutil armhf 5.9.4-1 [188 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf python3-py all 1.11.0-1 [89.2 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf python3-pysam armhf 0.17.0+ds-2+b1 [1834 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf python3-tomli all 2.0.1-2 [17.9 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest all 7.1.2-4 [218 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 65.5.0-1.1 [519 kB]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf python3-yaml armhf 6.0-3 [110 kB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf unzip armhf 6.0-27 [152 kB]
Get:205 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:206 http://172.17.4.1/private bookworm-staging/main armhf r-base-core armhf 4.2.2.20221110-1 [25.6 MB]
debconf: delaying package configuration, since apt-utils is not installed
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No schema files found: doing nothing.
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invoke-rc.d: could not determine current runlevel
invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block.
Setting up libnghttp2-14:armhf (1.51.0-1) ...
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Setting up python-babel-localedata (2.10.3-1) ...
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up libpaper1:armhf (1.1.28) ...

Creating config file /etc/papersize with new version
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Setting up liblapack3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
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Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
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Setting up po-debconf (1.0.21+nmu1) ...
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Setting up python3 (3.10.6-3) ...
Setting up man-db (2.11.1-1) ...
Not building database; man-db/auto-update is not 'true'.
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Setting up sphinx-common (5.3.0-2) ...
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Setting up python3-lib2to3 (3.10.8-1) ...
Setting up python3-appdirs (1.4.4-3) ...
Setting up python3-imagesize (1.4.1-1) ...
Setting up python3-pkg-resources (65.5.0-1.1) ...
Setting up python3-distutils (3.10.8-1) ...
Setting up dh-python (5.20220819+rpi1) ...
Setting up python3-more-itertools (8.10.0-2) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up python3-sympy (1.11.1-1) ...
Setting up python3-attr (22.2.0-1) ...
Setting up python3-pysam (0.17.0+ds-2+b1) ...
Setting up libpython3-dev:armhf (3.10.6-3) ...
Setting up python3-setuptools (65.5.0-1.1) ...
Setting up python3-tomli (2.0.1-2) ...
Setting up python3-py (1.11.0-1) ...
Setting up python3-babel (2.10.3-1) ...
update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
Setting up python3-lz4 (4.0.2+dfsg-1) ...
Setting up python3.11-dev (3.11.1-2) ...
Setting up python3-charset-normalizer (3.0.1-2) ...
Setting up python3-pytest (7.1.2-4) ...
Setting up python3-alabaster (0.7.12-1) ...
Setting up python3-unicodedata2 (14.0.0+ds2-1) ...
Setting up python3-all (3.10.6-3) ...
Setting up python3-yaml (6.0-3) ...
Setting up debhelper (13.11.4) ...
Setting up python3-fs (2.4.16-2) ...
Setting up python3-pygments (2.13.0+dfsg-1) ...
Setting up python3-chardet (5.1.0+dfsg-2) ...
Setting up libpython3-all-dev:armhf (3.10.6-3) ...
Setting up python3-dev (3.10.6-3) ...
Setting up python3-requests (2.28.1+dfsg-1) ...
Setting up python3-numpy (1:1.23.5-2+b1) ...
Setting up python3-contourpy (1.0.6-2+rpi1) ...
Setting up python3-all-dev (3.10.6-3) ...
Setting up python3-scipy (1.8.1-14+rpi1) ...
Setting up python3-pandas-lib:armhf (1.3.5+dfsg-6) ...
Setting up python3-pandas (1.3.5+dfsg-6) ...
Setting up python3-ufolib2 (0.14.0+dfsg1-1) ...
Setting up python3-fonttools (4.37.4-1) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.13.1-4.5) ...
Setting up fontconfig (2.13.1-4.5) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libtk8.6:armhf (8.6.13-1) ...
Processing triggers for libc-bin (2.36-6+rpi1) ...
Setting up libpango-1.0-0:armhf (1.50.12+ds-1) ...
Setting up libcairo2:armhf (1.16.0-7) ...
Setting up docutils-common (0.17.1+dfsg-3) ...
Setting up libpangoft2-1.0-0:armhf (1.50.12+ds-1) ...
Setting up libpangocairo-1.0-0:armhf (1.50.12+ds-1) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ...
Setting up blt (2.5.3+dfsg-4.1) ...
Setting up python3-tk:armhf (3.10.8-1) ...
Setting up python3-pil.imagetk:armhf (9.3.0-1) ...
Setting up r-base-core (4.2.2.20221110-1) ...

Creating config file /etc/R/Renviron with new version
Setting up python3-pil:armhf (9.3.0-1) ...
Setting up python3-matplotlib (3.6.2-3) ...
Processing triggers for sgml-base (1.31) ...
Setting up python3-docutils (0.17.1+dfsg-3) ...
Setting up python3-sphinx (5.3.0-2) ...
Setting up python3-numpydoc (1.5.0-1) ...
Setting up sbuild-build-depends-python-pybedtools-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.36-6+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.39.50.20221208-5+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-10+rpi1 gcc-12_12.2.0-10+rpi1 libc6-dev_2.36-6+rpi1 libstdc++-12-dev_12.2.0-10+rpi1 libstdc++6_12.2.0-10+rpi1 linux-libc-dev_6.0.12-1+rpi1
Package versions: adduser_3.129 apt_2.5.4 aptitude_0.8.13-5 aptitude-common_0.8.13-5 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2-2 bedtools_2.30.0+dfsg-2 binutils_2.39.50.20221208-5+rpi1 binutils-arm-linux-gnueabihf_2.39.50.20221208-5+rpi1 binutils-common_2.39.50.20221208-5+rpi1 blt_2.5.3+dfsg-4.1 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-10+rpi1 cython3_0.29.32-2 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.80 debhelper_13.11.4 debianutils_5.7-0.4 dh-autoreconf_20 dh-python_5.20220819+rpi1 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-1 dirmngr_2.2.40-1 docutils-common_0.17.1+dfsg-3 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.15-1 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 fontconfig_2.13.1-4.5 fontconfig-config_2.13.1-4.5 fonts-dejavu-core_2.37-2 fonts-lyx_2.3.7-1 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-10+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-10+rpi1 gcc-12-base_12.2.0-10+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-10 gettext-base_0.21-10 gnupg_2.2.40-1 gnupg-l10n_2.2.40-1 gnupg-utils_2.2.40-1 gpg_2.2.40-1 gpg-agent_2.2.40-1 gpg-wks-client_2.2.40-1 gpg-wks-server_2.2.40-1 gpgconf_2.2.40-1 gpgsm_2.2.40-1 gpgv_2.2.40-1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-1 libacl1_2.3.1-2 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libasan8_12.2.0-10+rpi1 libassuan0_2.5.5-5 libatomic1_12.2.0-10+rpi1 libattr1_1:2.5.1-3 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libbinutils_2.39.50.20221208-5+rpi1 libblas3_3.11.0-2 libblkid1_2.38.1-4 libboost-iostreams1.74.0_1.74.0-17+b1 libbrotli1_1.0.9-2+b2 libbsd0_0.11.7-1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.36-6+rpi1 libc-dev-bin_2.36-6+rpi1 libc6_2.36-6+rpi1 libc6-dev_2.36-6+rpi1 libcairo2_1.16.0-7 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-10+rpi1 libcom-err2_1.46.6~rc1-1 libcrypt-dev_1:4.4.33-1 libcrypt1_1:4.4.33-1 libctf-nobfd0_2.39.50.20221208-5+rpi1 libctf0_2.39.50.20221208-5+rpi1 libcurl3-gnutls_7.87.0-1 libcurl4_7.87.0-1 libcwidget4_0.5.18-6 libdatrie1_0.2.13-2+b2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.265 libdebhelper-perl_13.11.4 libdeflate0_1.14-1 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-2+rpi2 libexpat1_2.5.0-1 libexpat1-dev_2.5.0-1 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.0-2 libfontconfig1_2.13.1-4.5 libfreetype6_2.12.1+dfsg-3 libfribidi0_1.0.8-2.1 libgcc-12-dev_12.2.0-10+rpi1 libgcc-s1_12.2.0-10+rpi1 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_12.2.0-10+rpi1 libglib2.0-0_2.74.4-1 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-4 libgomp1_12.2.0-10+rpi1 libgpg-error0_1.46-1 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20.1-1 libharfbuzz0b_6.0.0-1 libhogweed6_3.8.1-2 libhts3_1.16+ds-3 libhtscodecs2_1.3.0-4 libice6_2:1.0.10-1 libicu72_72.1-3 libidn2-0_2.3.3-1 libimagequant0_2.17.0-1 libisl23_0.25-1 libjansson4_2.14-2 libjbig0_2.1-6.1 libjpeg62-turbo_1:2.1.2-1 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-jquery-ui_1.13.2+dfsg-1 libjs-sphinxdoc_5.3.0-2 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libjson-perl_4.10000-1 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 libksba8_1.6.2-4 liblapack3_3.11.0-2 liblbfgsb0_3.0+dfsg.3-11 liblcms2-2_2.13.1-1 libldap-2.4-2_2.4.59+dfsg-1+b1 libldap-2.5-0_2.5.13+dfsg-2+rpi1+b1 libldap-common_2.5.13+dfsg-2+rpi1 liblerc4_4.0.0+ds-2 liblz4-1_1.9.4-1+rpi1 liblzma5_5.4.0-0.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 libmount1_2.38.1-4 libmpc3_1.2.1-2 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.51.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libopenjp2-7_2.5.0-1 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpango-1.0-0_1.50.12+ds-1 libpangocairo-1.0-0_1.50.12+ds-1 libpangoft2-1.0-0_1.50.12+ds-1 libpaper-utils_1.1.28 libpaper1_1.1.28 libpcre2-8-0_10.40-3 libpcre3_2:8.39-14 libperl5.36_5.36.0-6 libpipeline1_1.5.7-1 libpixman-1-0_0.42.2-1 libpng16-16_1.6.39-2 libpsl5_0.21.0-1.2 libpython3-all-dev_3.10.6-3 libpython3-dev_3.10.6-3 libpython3-stdlib_3.10.6-3 libpython3.10_3.10.9-1 libpython3.10-dev_3.10.9-1 libpython3.10-minimal_3.10.9-1 libpython3.10-stdlib_3.10.9-1 libpython3.11_3.11.1-2 libpython3.11-dev_3.11.1-2 libpython3.11-minimal_3.11.1-2 libpython3.11-stdlib_3.11.1-2 libqhull-r8.0_2020.2-5 libraqm0_0.7.0-4 libreadline8_8.2-1.2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-10 libsasl2-modules-db_2.1.28+dfsg-10 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsigc++-2.0-0v5_2.10.8-1 libsm6_2:1.2.3-1 libsmartcols1_2.38.1-4 libsqlite3-0_3.40.0-1 libss2_1.46.6~rc1-1 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.7-1 libstdc++-12-dev_12.2.0-10+rpi1 libstdc++6_12.2.0-10+rpi1 libsub-override-perl_0.09-4 libsystemd0_252.2-1+rpi1 libtasn1-6_4.19.0-2 libtcl8.6_8.6.13+dfsg-1 libthai-data_0.1.29-1 libthai0_0.1.29-1 libtiff5_4.4.0-6 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtk8.6_8.6.13-1 libtool_2.4.7-5 libubsan1_12.2.0-10+rpi1 libuchardet0_0.0.7-1 libudev1_252.2-1+rpi1 libunistring2_1.0-2 libuuid1_2.38.1-4 libwebp7_1.2.2-2+b1 libwebpdemux2_1.2.2-2+b1 libwebpmux3_1.2.2-2+b1 libx11-6_2:1.8.3-3 libx11-data_2:1.8.3-3 libxapian30_1.4.21-1 libxau6_1:1.0.9-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1.1 libxrender1_1:0.9.10-1.1 libxslt1.1_1.1.35-1 libxss1_1:1.2.3-1 libxt6_1:1.2.1-1 libxxhash0_0.8.1-1 libyaml-0-2_0.2.5-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_6.0.12-1+rpi1 login_1:4.13+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.1-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38.1-4 nano_7.1-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.4 openssl_3.0.7-1 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-6 perl-base_5.36.0-6 perl-modules-5.36_5.36.0-6 pinentry-curses_1.2.1-1 po-debconf_1.0.21+nmu1 python-babel-localedata_2.10.3-1 python-matplotlib-data_3.6.2-3 python3_3.10.6-3 python3-alabaster_0.7.12-1 python3-all_3.10.6-3 python3-all-dev_3.10.6-3 python3-appdirs_1.4.4-3 python3-attr_22.2.0-1 python3-babel_2.10.3-1 python3-brotli_1.0.9-2+b2 python3-certifi_2022.9.24-1 python3-chardet_5.1.0+dfsg-2 python3-charset-normalizer_3.0.1-2 python3-contourpy_1.0.6-2+rpi1 python3-cycler_0.11.0-1 python3-dateutil_2.8.2-1 python3-decorator_5.1.1-3 python3-dev_3.10.6-3 python3-distutils_3.10.8-1 python3-docutils_0.17.1+dfsg-3 python3-fonttools_4.37.4-1 python3-fs_2.4.16-2 python3-idna_3.3-1 python3-imagesize_1.4.1-1 python3-iniconfig_1.1.1-2 python3-jinja2_3.0.3-2 python3-kiwisolver_1.4.4-1 python3-lib2to3_3.10.8-1 python3-lxml_4.9.2-1 python3-lz4_4.0.2+dfsg-1 python3-markupsafe_2.1.1-1 python3-matplotlib_3.6.2-3 python3-minimal_3.10.6-3 python3-more-itertools_8.10.0-2 python3-mpmath_1.2.1-2 python3-numpy_1:1.23.5-2+b1 python3-numpydoc_1.5.0-1 python3-packaging_22.0-2 python3-pandas_1.3.5+dfsg-6 python3-pandas-lib_1.3.5+dfsg-6 python3-pil_9.3.0-1 python3-pil.imagetk_9.3.0-1 python3-pkg-resources_65.5.0-1.1 python3-pluggy_1.0.0+repack-1 python3-psutil_5.9.4-1 python3-py_1.11.0-1 python3-pygments_2.13.0+dfsg-1 python3-pyparsing_3.0.9-1 python3-pysam_0.17.0+ds-2+b1 python3-pytest_7.1.2-4 python3-requests_2.28.1+dfsg-1 python3-roman_3.3-3 python3-scipy_1.8.1-14+rpi1 python3-setuptools_65.5.0-1.1 python3-six_1.16.0-4 python3-snowballstemmer_2.2.0-2 python3-sphinx_5.3.0-2 python3-sympy_1.11.1-1 python3-tk_3.10.8-1 python3-tomli_2.0.1-2 python3-tz_2022.7-1 python3-ufolib2_0.14.0+dfsg1-1 python3-unicodedata2_14.0.0+ds2-1 python3-urllib3_1.26.12-1 python3-yaml_6.0-3 python3.10_3.10.9-1 python3.10-dev_3.10.9-1 python3.10-minimal_3.10.9-1 python3.11_3.11.1-2 python3.11-dev_3.11.1-2 python3.11-minimal_3.11.1-2 r-base-core_4.2.2.20221110-1 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.2 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-pybedtools-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 sphinx-common_5.3.0-2 sysvinit-utils_3.05-7 tar_1.34+dfsg-1 tk8.6-blt2.5_2.5.3+dfsg-4.1 tzdata_2022f-1 ucf_3.0043 unicode-data_15.0.0-1 unzip_6.0-27 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 x11-common_1:7.7+23 xdg-utils_1.1.3-4.1 xml-core_0.18+nmu1 xz-utils_5.4.0-0.1 zip_3.0-12 zlib1g_1:1.2.13.dfsg-1 zlib1g-dev_1:1.2.13.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.GP_dA3qB/trustedkeys.kbx': General error
gpgv: Signature made Mon Jan  2 21:28:23 2023 UTC
gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv:                issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./python-pybedtools_0.9.0-4.dsc
dpkg-source: info: extracting python-pybedtools in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-pybedtools_0.9.0.orig.tar.gz
dpkg-source: info: unpacking python-pybedtools_0.9.0-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying spelling
dpkg-source: info: applying define_filenotfounderror_python2.patch
dpkg-source: info: applying remove_badges_from_documentation.patch
dpkg-source: info: applying add_missing_shebang.patch
dpkg-source: info: applying yaml_safe_load.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-57197704-ef91-4c13-a224-a57f51a76835
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package python-pybedtools
dpkg-buildpackage: info: source version 0.9.0-4
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --with python3,sphinxdoc --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/bin/rm -rf fakehome .eggs .pybuild
/bin/rm -rf debian/python3-pybedtools debian/files
/bin/rm -rf pybedtools.egg-info
/bin/rm -rf pybedtools/scripts/__pycache__/
/bin/rm -rf pybedtools/contrib/__pycache__/
/bin/rm -rf pybedtools/__pycache__/
find pybedtools -name "*.so" -o -name "*.o" | xargs -r rm
rm -rf build
/bin/rm -rf pybedtools/cbedtools.cpp pybedtools/featurefuncs.cpp
find docs/source/autodocs/ -name "*.rst" | xargs -r /bin/rm
# dh_auto_clean
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary-arch
dh binary-arch --with python3,sphinxdoc --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py config 
running config
I: pybuild base:240: python3.10 setup.py config 
running config
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
python3 setup.py cythonize
running cythonize
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/pybedtools/cbedtools.pxd
  tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/pybedtools/featurefuncs.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
Compiling pybedtools/cbedtools.pyx because it changed.
Compiling pybedtools/featurefuncs.pyx because it changed.
[1/2] Cythonizing pybedtools/cbedtools.pyx
[2/2] Cythonizing pybedtools/featurefuncs.pyx
dh_auto_build
I: pybuild base:240: /usr/bin/python3.11 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools
copying pybedtools/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools
copying pybedtools/bedtool.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools
copying pybedtools/filenames.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools
copying pybedtools/genome_registry.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools
copying pybedtools/helpers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools
copying pybedtools/logger.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools
copying pybedtools/parallel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools
copying pybedtools/paths.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools
copying pybedtools/settings.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools
copying pybedtools/stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools
copying pybedtools/version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test
copying pybedtools/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test
copying pybedtools/test/genomepy_integration.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test
copying pybedtools/test/regression_tests.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test
copying pybedtools/test/test_1.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test
copying pybedtools/test/test_cbedtools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test
copying pybedtools/test/test_contrib.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test
copying pybedtools/test/test_gzip_support.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test
copying pybedtools/test/test_helpers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test
copying pybedtools/test/test_issues.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test
copying pybedtools/test/test_len_leak.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test
copying pybedtools/test/test_pathlib.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test
copying pybedtools/test/tfuncs.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test
copying pybedtools/test/test_iter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/bigbed.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/intersection_matrix.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/long_range_interaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/venn_maker.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/bigwig.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/plotting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
running egg_info
creating pybedtools.egg-info
writing pybedtools.egg-info/PKG-INFO
writing dependency_links to pybedtools.egg-info/dependency_links.txt
writing requirements to pybedtools.egg-info/requires.txt
writing top-level names to pybedtools.egg-info/top_level.txt
writing manifest file 'pybedtools.egg-info/SOURCES.txt'
reading manifest file 'pybedtools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.c' under directory 'pybedtools'
warning: no previously-included files matching '__pycache__' found under directory '*'
warning: no previously-included files matching '*.py[co]' found under directory '*'
adding license file 'LICENSE.txt'
writing manifest file 'pybedtools.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'pybedtools.include' as data is deprecated, please list it in `packages`.
    !!


    ############################
    # Package would be ignored #
    ############################
    Python recognizes 'pybedtools.include' as an importable package,
    but it is not listed in the `packages` configuration of setuptools.

    'pybedtools.include' has been automatically added to the distribution only
    because it may contain data files, but this behavior is likely to change
    in future versions of setuptools (and therefore is considered deprecated).

    Please make sure that 'pybedtools.include' is included as a package by using
    the `packages` configuration field or the proper discovery methods
    (for example by using `find_namespace_packages(...)`/`find_namespace:`
    instead of `find_packages(...)`/`find:`).

    You can read more about "package discovery" and "data files" on setuptools
    documentation page.


!!

  check.warn(importable)
copying pybedtools/_Window.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools
copying pybedtools/cbedtools.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools
copying pybedtools/cbedtools.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools
copying pybedtools/cbedtools.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools
copying pybedtools/featurefuncs.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools
copying pybedtools/featurefuncs.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include
copying pybedtools/include/bedFile.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include
copying pybedtools/include/bedFile.h -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include
copying pybedtools/include/fileType.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include
copying pybedtools/include/fileType.h -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include
copying pybedtools/include/gzstream.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include
copying pybedtools/include/gzstream.h -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include
copying pybedtools/include/lineFileUtilities.h -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include
copying pybedtools/test/data/1000genomes-example.vcf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/164.gtf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/a.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/a.igv_script -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/a.links.html -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/b.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/bedpe.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/bedpe2.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/c.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/d.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/democonfig.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/exons.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/expand_test.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.1.100.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.1.100.bam.bai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.50.200.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.50.200.bam.bai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.cram -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.gff.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.othersort.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.sorted.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.sorted.bam.bai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/genome.fa -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/hg19.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/hg38-base.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/hg38-problem.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/issue319.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/issue319.out.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/issue319.vcf.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/issue_121.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/m1.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/mm9.bed12 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/multibamcov_test.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/reads.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/small.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/small.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/snps.bed.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/tag_test1.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/tag_test2.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test.fa -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test.fa.fai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test_bedpe.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test_peaks.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test_tsses.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/v.vcf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/vcf-stderr-test.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/vcf-stderr-test.vcf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/venn.b.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/venn.c.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/x.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/x.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/y.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data
copying pybedtools/test/gchart-expected.png -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test
copying pybedtools/test/mpl-expected.png -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test
copying pybedtools/test/prevent_open_file_regression -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test
copying pybedtools/test/test_cases.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test
copying pybedtools/test/test_merge215.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test
copying pybedtools/test/test_merge227.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test
copying pybedtools/test/test_shuffle215.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test
copying pybedtools/test/test_shuffle227.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test
running build_ext
building 'pybedtools.cbedtools' extension
creating build
creating build/temp.linux-armhf-cpython-311
creating build/temp.linux-armhf-cpython-311/pybedtools
creating build/temp.linux-armhf-cpython-311/pybedtools/include
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/cbedtools.cpp -o build/temp.linux-armhf-cpython-311/pybedtools/cbedtools.o
In file included from pybedtools/cbedtools.cpp:796:
pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)':
pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   92 |     for (register short i = 0; i < _binLevels; ++i) {
      |                         ^
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armhf-cpython-311/pybedtools/include/bedFile.o
In file included from pybedtools/include/bedFile.cpp:12:
pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)':
pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   92 |     for (register short i = 0; i < _binLevels; ++i) {
      |                         ^
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/fileType.cpp -o build/temp.linux-armhf-cpython-311/pybedtools/include/fileType.o
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armhf-cpython-311/pybedtools/include/gzstream.o
arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/pybedtools/cbedtools.o build/temp.linux-armhf-cpython-311/pybedtools/include/bedFile.o build/temp.linux-armhf-cpython-311/pybedtools/include/fileType.o build/temp.linux-armhf-cpython-311/pybedtools/include/gzstream.o -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lz -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.cpython-311-arm-linux-gnueabihf.so
building 'pybedtools.featurefuncs' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/featurefuncs.cpp -o build/temp.linux-armhf-cpython-311/pybedtools/featurefuncs.o
In file included from pybedtools/featurefuncs.cpp:796:
pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)':
pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   92 |     for (register short i = 0; i < _binLevels; ++i) {
      |                         ^
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armhf-cpython-311/pybedtools/include/bedFile.o
In file included from pybedtools/include/bedFile.cpp:12:
pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)':
pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   92 |     for (register short i = 0; i < _binLevels; ++i) {
      |                         ^
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/fileType.cpp -o build/temp.linux-armhf-cpython-311/pybedtools/include/fileType.o
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armhf-cpython-311/pybedtools/include/gzstream.o
arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/pybedtools/featurefuncs.o build/temp.linux-armhf-cpython-311/pybedtools/include/bedFile.o build/temp.linux-armhf-cpython-311/pybedtools/include/fileType.o build/temp.linux-armhf-cpython-311/pybedtools/include/gzstream.o -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lz -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/featurefuncs.cpython-311-arm-linux-gnueabihf.so
I: pybuild base:240: /usr/bin/python3 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/bedtool.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/filenames.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/genome_registry.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/helpers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/logger.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/parallel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/paths.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/settings.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/genomepy_integration.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/regression_tests.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_1.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_cbedtools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_contrib.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_gzip_support.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_helpers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_issues.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_len_leak.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_pathlib.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/tfuncs.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_iter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/bigbed.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/intersection_matrix.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/long_range_interaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/venn_maker.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/bigwig.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/plotting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
running egg_info
writing pybedtools.egg-info/PKG-INFO
writing dependency_links to pybedtools.egg-info/dependency_links.txt
writing requirements to pybedtools.egg-info/requires.txt
writing top-level names to pybedtools.egg-info/top_level.txt
reading manifest file 'pybedtools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.c' under directory 'pybedtools'
warning: no previously-included files matching '__pycache__' found under directory '*'
warning: no previously-included files matching '*.py[co]' found under directory '*'
adding license file 'LICENSE.txt'
writing manifest file 'pybedtools.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'pybedtools.include' as data is deprecated, please list it in `packages`.
    !!


    ############################
    # Package would be ignored #
    ############################
    Python recognizes 'pybedtools.include' as an importable package,
    but it is not listed in the `packages` configuration of setuptools.

    'pybedtools.include' has been automatically added to the distribution only
    because it may contain data files, but this behavior is likely to change
    in future versions of setuptools (and therefore is considered deprecated).

    Please make sure that 'pybedtools.include' is included as a package by using
    the `packages` configuration field or the proper discovery methods
    (for example by using `find_namespace_packages(...)`/`find_namespace:`
    instead of `find_packages(...)`/`find:`).

    You can read more about "package discovery" and "data files" on setuptools
    documentation page.


!!

  check.warn(importable)
copying pybedtools/_Window.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/cbedtools.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/cbedtools.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/cbedtools.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/featurefuncs.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/featurefuncs.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include
copying pybedtools/include/bedFile.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include
copying pybedtools/include/bedFile.h -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include
copying pybedtools/include/fileType.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include
copying pybedtools/include/fileType.h -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include
copying pybedtools/include/gzstream.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include
copying pybedtools/include/gzstream.h -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include
copying pybedtools/include/lineFileUtilities.h -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include
copying pybedtools/test/data/1000genomes-example.vcf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/164.gtf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/a.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/a.igv_script -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/a.links.html -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/b.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
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copying pybedtools/test/data/bedpe2.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/c.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/d.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/democonfig.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/exons.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/expand_test.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.1.100.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.1.100.bam.bai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.50.200.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.50.200.bam.bai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.cram -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
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copying pybedtools/test/data/gdc.gff.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.othersort.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.sorted.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.sorted.bam.bai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/genome.fa -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/hg19.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/hg38-base.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/hg38-problem.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/issue319.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
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copying pybedtools/test/data/mm9.bed12 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/multibamcov_test.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/reads.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
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copying pybedtools/test/data/small.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/snps.bed.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/tag_test1.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/tag_test2.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
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copying pybedtools/test/data/test.fa.fai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test_bedpe.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test_peaks.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test_tsses.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/v.vcf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/vcf-stderr-test.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/vcf-stderr-test.vcf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/venn.b.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/venn.c.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/x.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/x.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/y.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/gchart-expected.png -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/mpl-expected.png -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/prevent_open_file_regression -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_cases.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_merge215.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_merge227.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_shuffle215.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_shuffle227.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
running build_ext
building 'pybedtools.cbedtools' extension
creating build/temp.linux-armhf-cpython-310
creating build/temp.linux-armhf-cpython-310/pybedtools
creating build/temp.linux-armhf-cpython-310/pybedtools/include
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/cbedtools.cpp -o build/temp.linux-armhf-cpython-310/pybedtools/cbedtools.o
In file included from pybedtools/cbedtools.cpp:796:
pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)':
pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   92 |     for (register short i = 0; i < _binLevels; ++i) {
      |                         ^
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armhf-cpython-310/pybedtools/include/bedFile.o
In file included from pybedtools/include/bedFile.cpp:12:
pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)':
pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   92 |     for (register short i = 0; i < _binLevels; ++i) {
      |                         ^
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/fileType.cpp -o build/temp.linux-armhf-cpython-310/pybedtools/include/fileType.o
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armhf-cpython-310/pybedtools/include/gzstream.o
arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-310/pybedtools/cbedtools.o build/temp.linux-armhf-cpython-310/pybedtools/include/bedFile.o build/temp.linux-armhf-cpython-310/pybedtools/include/fileType.o build/temp.linux-armhf-cpython-310/pybedtools/include/gzstream.o -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lz -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/cbedtools.cpython-310-arm-linux-gnueabihf.so
building 'pybedtools.featurefuncs' extension
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/featurefuncs.cpp -o build/temp.linux-armhf-cpython-310/pybedtools/featurefuncs.o
In file included from pybedtools/featurefuncs.cpp:796:
pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)':
pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   92 |     for (register short i = 0; i < _binLevels; ++i) {
      |                         ^
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armhf-cpython-310/pybedtools/include/bedFile.o
In file included from pybedtools/include/bedFile.cpp:12:
pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)':
pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   92 |     for (register short i = 0; i < _binLevels; ++i) {
      |                         ^
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/fileType.cpp -o build/temp.linux-armhf-cpython-310/pybedtools/include/fileType.o
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armhf-cpython-310/pybedtools/include/gzstream.o
arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-310/pybedtools/featurefuncs.o build/temp.linux-armhf-cpython-310/pybedtools/include/bedFile.o build/temp.linux-armhf-cpython-310/pybedtools/include/fileType.o build/temp.linux-armhf-cpython-310/pybedtools/include/gzstream.o -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lz -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/featurefuncs.cpython-310-arm-linux-gnueabihf.so
python3 setup.py develop --user
running develop
/usr/lib/python3/dist-packages/setuptools/command/easy_install.py:146: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools.
  warnings.warn(
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
  warnings.warn(
running egg_info
writing pybedtools.egg-info/PKG-INFO
writing dependency_links to pybedtools.egg-info/dependency_links.txt
writing requirements to pybedtools.egg-info/requires.txt
writing top-level names to pybedtools.egg-info/top_level.txt
reading manifest file 'pybedtools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.c' under directory 'pybedtools'
warning: no previously-included files matching '__pycache__' found under directory '*'
warning: no previously-included files matching '*.py[co]' found under directory '*'
adding license file 'LICENSE.txt'
writing manifest file 'pybedtools.egg-info/SOURCES.txt'
running build_ext
building 'pybedtools.cbedtools' extension
creating build/temp.linux-armv7l-cpython-310
creating build/temp.linux-armv7l-cpython-310/pybedtools
creating build/temp.linux-armv7l-cpython-310/pybedtools/include
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/cbedtools.cpp -o build/temp.linux-armv7l-cpython-310/pybedtools/cbedtools.o
In file included from pybedtools/cbedtools.cpp:796:
pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)':
pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   92 |     for (register short i = 0; i < _binLevels; ++i) {
      |                         ^
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv7l-cpython-310/pybedtools/include/bedFile.o
In file included from pybedtools/include/bedFile.cpp:12:
pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)':
pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   92 |     for (register short i = 0; i < _binLevels; ++i) {
      |                         ^
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/fileType.cpp -o build/temp.linux-armv7l-cpython-310/pybedtools/include/fileType.o
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv7l-cpython-310/pybedtools/include/gzstream.o
arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-310/pybedtools/cbedtools.o build/temp.linux-armv7l-cpython-310/pybedtools/include/bedFile.o build/temp.linux-armv7l-cpython-310/pybedtools/include/fileType.o build/temp.linux-armv7l-cpython-310/pybedtools/include/gzstream.o -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lz -o /<<PKGBUILDDIR>>/pybedtools/cbedtools.cpython-310-arm-linux-gnueabihf.so
building 'pybedtools.featurefuncs' extension
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/featurefuncs.cpp -o build/temp.linux-armv7l-cpython-310/pybedtools/featurefuncs.o
In file included from pybedtools/featurefuncs.cpp:796:
pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)':
pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   92 |     for (register short i = 0; i < _binLevels; ++i) {
      |                         ^
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv7l-cpython-310/pybedtools/include/bedFile.o
In file included from pybedtools/include/bedFile.cpp:12:
pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)':
pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   92 |     for (register short i = 0; i < _binLevels; ++i) {
      |                         ^
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/fileType.cpp -o build/temp.linux-armv7l-cpython-310/pybedtools/include/fileType.o
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv7l-cpython-310/pybedtools/include/gzstream.o
arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-310/pybedtools/featurefuncs.o build/temp.linux-armv7l-cpython-310/pybedtools/include/bedFile.o build/temp.linux-armv7l-cpython-310/pybedtools/include/fileType.o build/temp.linux-armv7l-cpython-310/pybedtools/include/gzstream.o -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lz -o /<<PKGBUILDDIR>>/pybedtools/featurefuncs.cpython-310-arm-linux-gnueabihf.so
Creating /<<PKGBUILDDIR>>/fakehome/.local/lib/python3.10/site-packages/pybedtools.egg-link (link to .)
Adding pybedtools 0.9.0 to easy-install.pth file

Installed /<<PKGBUILDDIR>>
Processing dependencies for pybedtools==0.9.0
Searching for six==1.16.0
Best match: six 1.16.0
Adding six 1.16.0 to easy-install.pth file

Using /usr/lib/python3/dist-packages
Searching for pysam==0.17.0
Best match: pysam 0.17.0
Adding pysam 0.17.0 to easy-install.pth file

Using /usr/lib/python3/dist-packages
Finished processing dependencies for pybedtools==0.9.0
python3 setup.py build_sphinx
running build_sphinx
Running Sphinx v5.3.0
making output directory... done
[autosummary] generating autosummary for: 3-brief-examples.rst, FAQs.rst, autodoc_source.rst, changes.rst, create-a-bedtool-tutorial.rst, default-arguments.rst, each.rst, filtering.rst, flow-of-commands.rst, history.rst, ..., topical-create-a-bedtool.rst, topical-design-principles.rst, topical-documentation-contents.rst, topical-genome.rst, topical-iterators.rst, topical-low-level-ops.rst, topical-random.rst, topical-saving.rst, topical-wrapping.rst, tutorial-contents.rst
generated new fontManager
[autosummary] generating autosummary for: /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.absolute_distance.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.all_hits.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.annotate.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.any_hits.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.as_intervalfile.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.at.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_bed.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_fastq.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.bed6.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.bedpe_to_bam.rst, ..., /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.helpers.set_tempdir.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.parallel.parallel_apply.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.add_color.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.bedgraph_scale.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.extend_fields.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.five_prime.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.greater_than.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.less_than.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.normalized_to_length.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.three_prime.rst
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 48 source files that are out of date
updating environment: [new config] 157 added, 0 changed, 0 removed
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/usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning: Unknown section Example in the docstring of decorated in /<<PKGBUILDDIR>>/pybedtools/bedtool.py.
  warn(msg)
/usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning: Unknown section Example in the docstring of tag_bedpe in /<<PKGBUILDDIR>>/pybedtools/contrib/long_range_interaction.py.
  warn(msg)
reading sources... [  2%] autodocs/pybedtools.bedtool.BedTool
/usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning: Unknown section Example in the docstring of decorated in /<<PKGBUILDDIR>>/pybedtools/bedtool.py.
  warn(msg)
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    (for example by using `find_namespace_packages(...)`/`find_namespace:`
    instead of `find_packages(...)`/`find:`).

    You can read more about "package discovery" and "data files" on setuptools
    documentation page.


!!

  check.warn(importable)
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/bedtool.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/filenames.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/genome_registry.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/helpers.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/logger.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/parallel.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/paths.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/settings.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/stats.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/genomepy_integration.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/regression_tests.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_1.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_cbedtools.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_contrib.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_gzip_support.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_helpers.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_issues.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_len_leak.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_pathlib.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/tfuncs.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_iter.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/1000genomes-example.vcf -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/164.gtf -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/a.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/a.igv_script -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/a.links.html -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/b.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/bedpe.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/bedpe2.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/c.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/d.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/democonfig.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/exons.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/expand_test.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.1.100.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.1.100.bam.bai -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.50.200.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.50.200.bam.bai -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.cram -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.gff.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.othersort.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.sorted.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.sorted.bam.bai -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/genome.fa -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/hg19.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/hg38-base.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/hg38-problem.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/issue319.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/issue319.out.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/issue319.vcf.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/issue_121.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/m1.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/mm9.bed12 -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/multibamcov_test.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/reads.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/small.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/small.fastq -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/snps.bed.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/tag_test1.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/tag_test2.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test.fa -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test.fa.fai -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test_bedpe.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test_peaks.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test_tsses.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/v.vcf -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/vcf-stderr-test.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/vcf-stderr-test.vcf -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/venn.b.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/venn.c.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/x.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/x.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/y.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/gchart-expected.png -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/mpl-expected.png -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/prevent_open_file_regression -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_cases.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_merge215.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_merge227.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_shuffle215.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_shuffle227.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/bigbed.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/intersection_matrix.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/long_range_interaction.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/venn_maker.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/bigwig.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/plotting.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/_Window.pyx -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.pxd -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.pyx -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/featurefuncs.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/featurefuncs.pyx -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/bedFile.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/bedFile.h -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/fileType.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/fileType.h -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/gzstream.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/gzstream.h -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/lineFileUtilities.h -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.cpython-311-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/featurefuncs.cpython-311-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/version.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/bedtool.py to bedtool.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/filenames.py to filenames.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/genome_registry.py to genome_registry.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/helpers.py to helpers.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/logger.py to logger.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/parallel.py to parallel.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/paths.py to paths.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/settings.py to settings.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/stats.py to stats.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/genomepy_integration.py to genomepy_integration.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/regression_tests.py to regression_tests.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_1.py to test_1.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_cbedtools.py to test_cbedtools.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_contrib.py to test_contrib.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_gzip_support.py to test_gzip_support.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_helpers.py to test_helpers.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_issues.py to test_issues.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_len_leak.py to test_len_leak.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_pathlib.py to test_pathlib.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/tfuncs.py to tfuncs.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_iter.py to test_iter.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/bigbed.py to bigbed.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/intersection_matrix.py to intersection_matrix.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/long_range_interaction.py to long_range_interaction.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/venn_maker.py to venn_maker.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/bigwig.py to bigwig.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/plotting.py to plotting.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/version.py to version.cpython-311.pyc
running install_egg_info
Copying pybedtools.egg-info to /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools-0.9.0.egg-info
Skipping SOURCES.txt
running install_scripts
I: pybuild base:240: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-pybedtools 
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
  warnings.warn(
running build
running build_py
copying pybedtools/version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
running egg_info
writing pybedtools.egg-info/PKG-INFO
writing dependency_links to pybedtools.egg-info/dependency_links.txt
writing requirements to pybedtools.egg-info/requires.txt
writing top-level names to pybedtools.egg-info/top_level.txt
reading manifest file 'pybedtools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.c' under directory 'pybedtools'
warning: no previously-included files matching '__pycache__' found under directory '*'
warning: no previously-included files matching '*.py[co]' found under directory '*'
adding license file 'LICENSE.txt'
writing manifest file 'pybedtools.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'pybedtools.include' as data is deprecated, please list it in `packages`.
    !!


    ############################
    # Package would be ignored #
    ############################
    Python recognizes 'pybedtools.include' as an importable package,
    but it is not listed in the `packages` configuration of setuptools.

    'pybedtools.include' has been automatically added to the distribution only
    because it may contain data files, but this behavior is likely to change
    in future versions of setuptools (and therefore is considered deprecated).

    Please make sure that 'pybedtools.include' is included as a package by using
    the `packages` configuration field or the proper discovery methods
    (for example by using `find_namespace_packages(...)`/`find_namespace:`
    instead of `find_packages(...)`/`find:`).

    You can read more about "package discovery" and "data files" on setuptools
    documentation page.


!!

  check.warn(importable)
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/bedtool.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/filenames.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/genome_registry.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/helpers.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/logger.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/parallel.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/paths.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/settings.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/stats.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/genomepy_integration.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/regression_tests.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_1.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_cbedtools.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_contrib.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_gzip_support.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_helpers.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_issues.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_len_leak.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_pathlib.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/tfuncs.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_iter.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/1000genomes-example.vcf -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/164.gtf -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/a.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/a.igv_script -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/a.links.html -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/b.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/bedpe.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/bedpe2.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/c.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/d.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/democonfig.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/exons.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/expand_test.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.1.100.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.1.100.bam.bai -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.50.200.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.50.200.bam.bai -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.cram -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.gff.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.othersort.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.sorted.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.sorted.bam.bai -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/genome.fa -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/hg19.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/hg38-base.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/hg38-problem.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/issue319.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/issue319.out.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/issue319.vcf.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/issue_121.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/m1.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/mm9.bed12 -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/multibamcov_test.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/reads.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/small.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/small.fastq -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/snps.bed.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/tag_test1.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/tag_test2.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/test.fa -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/test.fa.fai -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/test_bedpe.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/test_peaks.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/test_tsses.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/v.vcf -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/vcf-stderr-test.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/vcf-stderr-test.vcf -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/venn.b.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/venn.c.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/x.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/x.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/y.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/gchart-expected.png -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/mpl-expected.png -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/prevent_open_file_regression -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_cases.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_merge215.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_merge227.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_shuffle215.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_shuffle227.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/bigbed.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/intersection_matrix.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/long_range_interaction.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/venn_maker.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/bigwig.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/plotting.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/_Window.pyx -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/cbedtools.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/cbedtools.pxd -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/cbedtools.pyx -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/featurefuncs.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/featurefuncs.pyx -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/bedFile.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/bedFile.h -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/fileType.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/fileType.h -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/gzstream.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/gzstream.h -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/lineFileUtilities.h -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/cbedtools.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/featurefuncs.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/version.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/bedtool.py to bedtool.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/filenames.py to filenames.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/genome_registry.py to genome_registry.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/helpers.py to helpers.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/logger.py to logger.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/parallel.py to parallel.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/paths.py to paths.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/settings.py to settings.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/stats.py to stats.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/genomepy_integration.py to genomepy_integration.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/regression_tests.py to regression_tests.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_1.py to test_1.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_cbedtools.py to test_cbedtools.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_contrib.py to test_contrib.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_gzip_support.py to test_gzip_support.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_helpers.py to test_helpers.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_issues.py to test_issues.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_len_leak.py to test_len_leak.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_pathlib.py to test_pathlib.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/tfuncs.py to tfuncs.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_iter.py to test_iter.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/bigbed.py to bigbed.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/intersection_matrix.py to intersection_matrix.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/long_range_interaction.py to long_range_interaction.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/venn_maker.py to venn_maker.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/bigwig.py to bigwig.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/plotting.py to plotting.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/version.py to version.cpython-310.pyc
running install_egg_info
Copying pybedtools.egg-info to /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools-0.9.0.egg-info
Skipping SOURCES.txt
running install_scripts
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
rm -f debian/python3-pybedtools/usr/lib/python3*/dist-packages/pybedtools/test/prevent_open_file_regression
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a -O--buildsystem=pybuild
   dh_sphinxdoc -a -O--buildsystem=pybuild
dh_sphinxdoc: warning: Sphinx documentation not found
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_installexamples -a -O--buildsystem=pybuild
   dh_python3 -a -O--buildsystem=pybuild
   dh_installsystemduser -a -O--buildsystem=pybuild
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_strip_nondeterminism -a -O--buildsystem=pybuild
   dh_compress -a -O--buildsystem=pybuild
   dh_fixperms -a -O--buildsystem=pybuild
   dh_missing -a -O--buildsystem=pybuild
   dh_dwz -a -O--buildsystem=pybuild
   dh_strip -a -O--buildsystem=pybuild
   dh_makeshlibs -a -O--buildsystem=pybuild
   dh_shlibdeps -a -O--buildsystem=pybuild
   dh_installdeb -a -O--buildsystem=pybuild
   dh_gencontrol -a -O--buildsystem=pybuild
   dh_md5sums -a -O--buildsystem=pybuild
   dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pybedtools-dbgsym' in '../python3-pybedtools-dbgsym_0.9.0-4_armhf.deb'.
dpkg-deb: building package 'python3-pybedtools' in '../python3-pybedtools_0.9.0-4_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../python-pybedtools_0.9.0-4_armhf.buildinfo
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../python-pybedtools_0.9.0-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-01-08T09:17:25Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


python-pybedtools_0.9.0-4_armhf.changes:
----------------------------------------

Format: 1.8
Date: Mon, 02 Jan 2023 21:49:24 +0100
Source: python-pybedtools
Binary: python3-pybedtools python3-pybedtools-dbgsym
Architecture: armhf
Version: 0.9.0-4
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
 python3-pybedtools - Python 3 wrapper around BEDTools for bioinformatics work
Closes: 1025116
Changes:
 python-pybedtools (0.9.0-4) unstable; urgency=medium
 .
   * Team upload.
   * d/control: restore python3 all versions support now that pysam supports
     python3.11.
     Thanks to Andreas Beckmann for the reminder. (Closes: #1025116)
   * d/copyright: update copyright year.
   * d/control: declare compliance to standards version 4.6.2.
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Files:
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+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


python3-pybedtools-dbgsym_0.9.0-4_armhf.deb
-------------------------------------------

 new Debian package, version 2.0.
 size 2040728 bytes: control archive=764 bytes.
     537 bytes,    12 lines      control              
     522 bytes,     5 lines      md5sums              
 Package: python3-pybedtools-dbgsym
 Source: python-pybedtools
 Version: 0.9.0-4
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 2200
 Depends: python3-pybedtools (= 0.9.0-4)
 Section: debug
 Priority: optional
 Description: debug symbols for python3-pybedtools
 Build-Ids: 57a909be6fcfa4d8f76b84fb40bedee5ef57d441 a8c72d87cd2ef74a18941809213cce8431b1804d bcd5d2d1fdd3ca23de74cb175eca2a37cf43d3ea feb862b8e4db1b226997cfeb577122d195858ae3

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drwxr-xr-x root/root         0 2023-01-02 20:49 ./usr/lib/debug/
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drwxr-xr-x root/root         0 2023-01-02 20:49 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2023-01-02 20:49 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root    148840 2023-01-02 20:49 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-pybedtools.debug
drwxr-xr-x root/root         0 2023-01-02 20:49 ./usr/share/
drwxr-xr-x root/root         0 2023-01-02 20:49 ./usr/share/doc/
lrwxrwxrwx root/root         0 2023-01-02 20:49 ./usr/share/doc/python3-pybedtools-dbgsym -> python3-pybedtools


python3-pybedtools_0.9.0-4_armhf.deb
------------------------------------

 new Debian package, version 2.0.
 size 12197120 bytes: control archive=4480 bytes.
     786 bytes,    17 lines      control              
   12737 bytes,   130 lines      md5sums              
     283 bytes,    12 lines   *  postinst             #!/bin/sh
     396 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: python3-pybedtools
 Source: python-pybedtools
 Version: 0.9.0-4
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 17551
 Depends: python3 (<< 3.12), python3 (>= 3.10~), python3-pysam, python3-six, python3:any, libc6 (>= 2.33), libgcc-s1 (>= 3.5), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4)
 Suggests: python-pybedtools-doc
 Section: python
 Priority: optional
 Homepage: https://daler.github.io/pybedtools/
 Description: Python 3 wrapper around BEDTools for bioinformatics work
  The BEDTools suite of programs is widely used for genomic interval
  manipulation or “genome algebra”. pybedtools wraps and extends BEDTools and
  offers feature-level manipulations from within Python.
  .
  This is the Python 3 version.

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-rw-r--r-- root/root      3948 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/__init__.py
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-rw-r--r-- root/root    951303 2023-01-02 20:49 ./usr/lib/python3/dist-packages/pybedtools/cbedtools.cpp
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-rw-r--r-- root/root     19833 2023-01-02 20:49 ./usr/lib/python3/dist-packages/pybedtools/contrib/plotting.py
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| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
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Build Architecture: armhf
Build-Space: 118060
Build-Time: 1183
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 2564
Job: python-pybedtools_0.9.0-4
Machine Architecture: armhf
Package: python-pybedtools
Package-Time: 3806
Source-Version: 0.9.0-4
Space: 118060
Status: successful
Version: 0.9.0-4
--------------------------------------------------------------------------------
Finished at 2023-01-08T09:17:25Z
Build needed 01:03:26, 118060k disc space

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