python-pybedtools →
0.9.0-2 →
armhf → 2022-10-28 15:54:08
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard
+==============================================================================+
| python-pybedtools 0.9.0-2 (armhf) Fri, 28 Oct 2022 15:08:00 +0000 |
+==============================================================================+
Package: python-pybedtools
Version: 0.9.0-2
Source Version: 0.9.0-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-0cdabca4-6b9c-44f9-86b6-f80a243ee524' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.4 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.2 MB]
Fetched 27.6 MB in 30s (922 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-pybedtools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-pybedtools.git
Please use:
git clone https://salsa.debian.org/med-team/python-pybedtools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 12.5 MB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main python-pybedtools 0.9.0-2 (dsc) [2510 B]
Get:2 http://172.17.4.1/private bookworm-staging/main python-pybedtools 0.9.0-2 (tar) [12.5 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main python-pybedtools 0.9.0-2 (diff) [29.4 kB]
Fetched 12.5 MB in 3s (4818 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-pybedtools-BrotJB/python-pybedtools-0.9.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-pybedtools-BrotJB' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-ZCJsDg/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-ZCJsDg/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-ZCJsDg/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ZCJsDg/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ZCJsDg/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ZCJsDg/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ZCJsDg/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ZCJsDg/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2655 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 27 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ZCJsDg/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.6 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12851 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, bedtools, cython3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-pytest, python3-numpy, python3-numpydoc, python3-pandas, python3-psutil, python3-yaml, python3-tk, python3-sphinx, r-base-core, zlib1g-dev
Filtered Build-Depends: debhelper-compat (= 13), dh-python, bedtools, cython3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-pytest, python3-numpy, python3-numpydoc, python3-pandas, python3-psutil, python3-yaml, python3-tk, python3-sphinx, r-base-core, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-python-pybedtools-dummy' in '/<<BUILDDIR>>/resolver-ZCJsDg/apt_archive/sbuild-build-depends-python-pybedtools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-pybedtools-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ZCJsDg/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ZCJsDg/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ZCJsDg/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ZCJsDg/apt_archive ./ Sources [598 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ZCJsDg/apt_archive ./ Packages [680 B]
Fetched 2611 B in 1s (3580 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install python-pybedtools build dependencies (apt-based resolver)
-----------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bedtools blt bsdextrautils
ca-certificates cython3 debhelper dh-autoreconf dh-python
dh-strip-nondeterminism docutils-common dwz file fontconfig
fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libblas3 libbrotli1 libbsd0
libcairo2 libcurl3-gnutls libcurl4 libdatrie1 libdebhelper-perl libdeflate0
libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhts3 libhtscodecs2 libice6 libicu71
libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui
libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblbfgsb0
liblcms2-2 liblerc4 libmagic-mgc libmagic1 libmd0 libmpdec3 libnghttp2-14
libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpng16-16 libpsl5
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10
libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libqhull-r8.0
libraqm0 librtmp1 libsm6 libssh2-1 libsub-override-perl libtcl8.6
libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp7
libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1
libxslt1.1 libxss1 libxt6 libyaml-0-2 m4 man-db media-types openssl
po-debconf python-babel-localedata python-matplotlib-data python3
python3-alabaster python3-all python3-all-dev python3-appdirs python3-attr
python3-babel python3-brotli python3-certifi python3-chardet
python3-charset-normalizer python3-cycler python3-dateutil python3-decorator
python3-dev python3-distutils python3-docutils python3-fonttools python3-fs
python3-idna python3-imagesize python3-importlib-metadata python3-iniconfig
python3-jinja2 python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4
python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools
python3-mpmath python3-numpy python3-numpydoc python3-packaging
python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk
python3-pkg-resources python3-pluggy python3-psutil python3-py
python3-pygments python3-pyparsing python3-pysam python3-pytest
python3-requests python3-roman python3-scipy python3-setuptools python3-six
python3-snowballstemmer python3-sphinx python3-sympy python3-tk
python3-tomli python3-tz python3-ufolib2 python3-unicodedata2
python3-urllib3 python3-yaml python3-zipp python3.10 python3.10-dev
python3.10-minimal r-base-core sphinx-common tk8.6-blt2.5 ucf unicode-data
unzip x11-common xdg-utils xml-core zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc blt-demo cython-doc dh-make flit
python3-build python3-installer gettext-doc libasprintf-dev libgettextpo-dev
groff libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-venv python-attr-doc python-cycler-doc
docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french
texlive-latex-base texlive-latex-recommended python-jinja2-doc
python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript
gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc
python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5
python3-sip python3-tornado texlive-extra-utils texlive-latex-extra
python-mpmath-doc python3-gmpy2 gfortran python-numpy-doc python-pandas-doc
python3-statsmodels python-pil-doc python-psutil-doc subversion
python-pygments-doc ttf-bitstream-vera python-pyparsing-doc
python3-cryptography python3-openssl python3-socks python-requests-doc
python-scipy-doc python-setuptools-doc python3-stemmer fonts-freefont-otf
imagemagick-6.q16 latexmk libjs-mathjax python3-sphinx-rtd-theme sphinx-doc
tex-gyre texlive-fonts-recommended texlive-plain-generic texlive-fonts-extra
python-sympy-doc tix python3-tk-dbg python3.10-venv python3.10-doc
binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common libjson-xs-perl publicsuffix libltdl-dev
libmail-sendmail-perl python3-bs4 python3-html5lib python3-bottleneck
python3-numexpr python3-odf python3-openpyxl python3-xlwt python3-tables
python3-olefile isympy-common r-recommended r-base-dev r-doc-html
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bedtools blt bsdextrautils
ca-certificates cython3 debhelper dh-autoreconf dh-python
dh-strip-nondeterminism docutils-common dwz file fontconfig
fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libblas3 libbrotli1 libbsd0
libcairo2 libcurl3-gnutls libcurl4 libdatrie1 libdebhelper-perl libdeflate0
libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhts3 libhtscodecs2 libice6 libicu71
libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui
libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblbfgsb0
liblcms2-2 liblerc4 libmagic-mgc libmagic1 libmd0 libmpdec3 libnghttp2-14
libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpng16-16 libpsl5
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10
libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libqhull-r8.0
libraqm0 librtmp1 libsm6 libssh2-1 libsub-override-perl libtcl8.6
libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp7
libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1
libxslt1.1 libxss1 libxt6 libyaml-0-2 m4 man-db media-types openssl
po-debconf python-babel-localedata python-matplotlib-data python3
python3-alabaster python3-all python3-all-dev python3-appdirs python3-attr
python3-babel python3-brotli python3-certifi python3-chardet
python3-charset-normalizer python3-cycler python3-dateutil python3-decorator
python3-dev python3-distutils python3-docutils python3-fonttools python3-fs
python3-idna python3-imagesize python3-importlib-metadata python3-iniconfig
python3-jinja2 python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4
python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools
python3-mpmath python3-numpy python3-numpydoc python3-packaging
python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk
python3-pkg-resources python3-pluggy python3-psutil python3-py
python3-pygments python3-pyparsing python3-pysam python3-pytest
python3-requests python3-roman python3-scipy python3-setuptools python3-six
python3-snowballstemmer python3-sphinx python3-sympy python3-tk
python3-tomli python3-tz python3-ufolib2 python3-unicodedata2
python3-urllib3 python3-yaml python3-zipp python3.10 python3.10-dev
python3.10-minimal r-base-core sbuild-build-depends-python-pybedtools-dummy
sphinx-common tk8.6-blt2.5 ucf unicode-data unzip x11-common xdg-utils
xml-core zip zlib1g-dev
0 upgraded, 200 newly installed, 0 to remove and 27 not upgraded.
Need to get 140 MB of archives.
After this operation, 533 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ZCJsDg/apt_archive ./ sbuild-build-depends-python-pybedtools-dummy 0.invalid.0 [960 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-minimal armhf 3.10.7-2 [769 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.9-1 [83.3 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.7-2 [1477 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.10.6-1 [38.7 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf media-types all 8.0.0 [33.4 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.7-2 [1597 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.7-2 [502 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.10.6-1 [21.7 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.10.6-1 [38.2 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-1.1 [78.2 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-3 [34.3 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.0-1 [1299 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.5-4 [1346 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-9 [171 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-9 [510 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf bedtools armhf 2.30.0+dfsg-2 [516 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.12+dfsg-1 [906 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.38-2 [273 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [352 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config armhf 2.13.1-4.5 [281 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.5 [330 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-1 [112 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.8.1-2 [308 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.8.1-2 [704 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.12-1 [680 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [477 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf cython3 armhf 0.29.32-1 [1224 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.10 [79.8 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14+20220924-2 [93.1 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-9 [1220 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.10 [940 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.10.7-1 [79.9 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.10.7-1 [141 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220819+rpi1 [114 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf docutils-common all 0.17.1+dfsg-2 [127 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.5 [416 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf fonts-lyx all 2.3.6.1-1 [206 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-2 [109 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-6 [496 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.50.0-1 [65.0 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.85.0-1 [320 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.85.0-1 [325 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.9-1 [136 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-3+rpi1 [238 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.74.0-3 [1211 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 5.2.0-2 [1835 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libhtscodecs2 armhf 1.3.0-4 [59.5 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libhts3 armhf 1.16+ds-3 [367 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libimagequant0 armhf 2.17.0-1 [28.0 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-1 [119 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.5.0-4 [142 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libjson-perl all 4.10000-1 [87.5 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-2 [1587 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-11 [24.3 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.13.1-1 [125 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-2 [133 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libopenjp2-7 armhf 2.5.0-1 [165 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.50.10+ds-1 [214 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.50.10+ds-1 [68.6 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.50.10+ds-1 [58.3 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10 armhf 3.10.7-2 [1457 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4.1 [183 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-dev armhf 3.10.7-2 [2919 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.10.6-1 [22.0 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.10.6-1 [1068 B]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libqhull-r8.0 armhf 2020.2-5 [221 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libraqm0 armhf 0.7.0-4 [9388 B]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2 [237 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-4 [290 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libwebpdemux2 armhf 1.2.2-2 [97.1 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libwebpmux3 armhf 1.2.2-2 [105 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libxslt1.1 armhf 1.1.35-1 [221 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.1-1 [159 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libyaml-0-2 armhf 0.2.5-1 [44.6 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf python-babel-localedata all 2.10.3-1 [5615 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf python-matplotlib-data all 3.5.2-2 [2741 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf python3-alabaster all 0.7.12-1 [20.8 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.10.6-1 [1060 B]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf python3.10-dev armhf 3.10.7-2 [512 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.10.6-1 [25.4 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf python3-all-dev armhf 3.10.6-1 [1068 B]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf python3-appdirs all 1.4.4-3 [13.0 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf python3-attr all 22.1.0-1 [64.1 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 65.5.0-1 [278 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf python3-tz all 2022.4-1 [34.9 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf python3-babel all 2.10.3-1 [103 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf python3-brotli armhf 1.0.9-2+b2 [278 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf python3-certifi all 2022.6.15-2 [154 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf python3-chardet all 4.0.0-2 [99.1 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf python3-charset-normalizer all 2.0.6-2 [30.6 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf python3-cycler all 0.11.0-1 [8020 B]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf python3-six all 1.16.0-4 [17.5 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf python3-dateutil all 2.8.2-1 [78.2 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf python3-decorator all 5.1.1-2 [16.5 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf python3-roman all 3.3-1 [10.7 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf python3-docutils all 0.17.1+dfsg-2 [393 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.21.5-1+b2 [3423 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf python3-scipy armhf 1.8.1-14+rpi1 [12.9 MB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf python3-ufolib2 all 0.13.1+dfsg1-1 [32.0 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf python3-mpmath all 1.2.1-2 [418 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf python3-sympy all 1.10.1-3 [4317 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf python3-fs all 2.4.16-2 [95.2 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf python3-lxml armhf 4.9.1-1 [959 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf python3-lz4 armhf 4.0.2+dfsg-1 [23.9 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf python3-unicodedata2 armhf 14.0.0+ds2-1 [298 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf unicode-data all 15.0.0-1 [7984 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf python3-fonttools armhf 4.37.4-1 [983 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf python3-idna all 3.3-1 [39.4 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf python3-imagesize all 1.4.1-1 [6688 B]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf python3-more-itertools all 8.10.0-2 [53.0 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf python3-zipp all 1.0.0-4 [6160 B]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf python3-importlib-metadata all 4.12.0-1 [24.9 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf python3-markupsafe armhf 2.1.1-1 [13.6 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf python3-jinja2 all 3.0.3-2 [121 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf python3-kiwisolver armhf 1.3.2-1+b1 [52.1 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf python3-pil armhf 9.2.0-1 [430 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf python3-tk armhf 3.10.7-1 [104 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf python3-pil.imagetk armhf 9.2.0-1 [78.5 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf python3-pyparsing all 3.0.7-2 [140 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf python3-packaging all 21.3-1.1 [34.2 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf python3-matplotlib armhf 3.5.2-2 [6495 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf sphinx-common all 4.5.0-4 [638 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf python3-pygments all 2.12.0+dfsg-2 [765 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf python3-urllib3 all 1.26.12-1 [117 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf python3-requests all 2.27.1+dfsg-1 [71.9 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf python3-snowballstemmer all 2.2.0-2 [57.8 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf python3-sphinx all 4.5.0-4 [540 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf python3-numpydoc all 1.5.0-1 [43.0 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas-lib armhf 1.3.5+dfsg-5 [5080 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas all 1.3.5+dfsg-5 [2654 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf python3-pluggy all 1.0.0+repack-1 [19.7 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf python3-psutil armhf 5.9.2-1 [188 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf python3-py all 1.11.0-1 [89.2 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf python3-pysam armhf 0.17.0+ds-2+b1 [1834 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf python3-tomli all 2.0.1-1 [18.1 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest all 7.1.2-4 [218 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 65.5.0-1 [519 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf python3-yaml armhf 5.4.1-1+b1 [151 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf unzip armhf 6.0-27 [152 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf r-base-core armhf 4.2.1-3 [27.7 MB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libhtscodecs2:armhf (1.3.0-4) ...
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No schema files found: doing nothing.
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Setting up libbrotli1:armhf (1.0.9-2+b2) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up libpaper1:armhf (1.1.28) ...
Creating config file /etc/papersize with new version
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
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Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
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Not building database; man-db/auto-update is not 'true'.
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update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
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Setting up python3-fonttools (4.37.4-1) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.13.1-4.5) ...
Setting up fontconfig (2.13.1-4.5) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.6-1) ...
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Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ...
Setting up blt (2.5.3+dfsg-4.1) ...
Setting up python3-tk:armhf (3.10.7-1) ...
Setting up python3-pil.imagetk:armhf (9.2.0-1) ...
Setting up r-base-core (4.2.1-3) ...
Creating config file /etc/R/Renviron with new version
Setting up python3-pil:armhf (9.2.0-1) ...
Setting up python3-matplotlib (3.5.2-2) ...
Processing triggers for sgml-base (1.31) ...
Setting up python3-docutils (0.17.1+dfsg-2) ...
Setting up python3-sphinx (4.5.0-4) ...
Setting up python3-numpydoc (1.5.0-1) ...
Setting up sbuild-build-depends-python-pybedtools-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.35-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.39-6+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-3+rpi1 gcc-12_12.2.0-3+rpi1 libc6-dev_2.35-2+rpi1 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 apt_2.5.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2~rc2-2 bedtools_2.30.0+dfsg-2 binutils_2.39-6+rpi1 binutils-arm-linux-gnueabihf_2.39-6+rpi1 binutils-common_2.39-6+rpi1 blt_2.5.3+dfsg-4.1 bsdextrautils_2.38.1-1.1 bsdutils_1:2.38.1-1.1 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-3+rpi1 cython3_0.29.32-1 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.10 debianutils_5.7-0.3 dh-autoreconf_20 dh-python_5.20220819+rpi1 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dirmngr_2.2.39-1 docutils-common_0.17.1+dfsg-2 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 fontconfig_2.13.1-4.5 fontconfig-config_2.13.1-4.5 fonts-dejavu-core_2.37-2 fonts-lyx_2.3.6.1-1 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-3+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-3+rpi1 gcc-12-base_12.2.0-3+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-9 gettext-base_0.21-9 gnupg_2.2.39-1 gnupg-l10n_2.2.39-1 gnupg-utils_2.2.39-1 gpg_2.2.39-1 gpg-agent_2.2.39-1 gpg-wks-client_2.2.39-1 gpg-wks-server_2.2.39-1 gpgconf_2.2.39-1 gpgsm_2.2.39-1 gpgv_2.2.39-1 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20211215-1 krb5-locales_1.20-1 libacl1_2.3.1-1 libapt-pkg6.0_2.5.3 libarchive-zip-perl_1.68-1 libasan8_12.2.0-3+rpi1 libassuan0_2.5.5-4 libatomic1_12.2.0-3+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libbinutils_2.39-6+rpi1 libblas3_3.10.1-2 libblkid1_2.38.1-1.1 libbrotli1_1.0.9-2+b2 libbsd0_0.11.7-1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.35-2+rpi1 libc-dev-bin_2.35-2+rpi1 libc6_2.35-2+rpi1 libc6-dev_2.35-2+rpi1 libcairo2_1.16.0-6 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-3+rpi1 libcom-err2_1.46.6~rc1-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.39-6+rpi1 libctf0_2.39-6+rpi1 libcurl3-gnutls_7.85.0-1 libcurl4_7.85.0-1 libdatrie1_0.2.13-2+b2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.10 libdeflate0_1.14-1 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-2+rpi2 libexpat1_2.4.9-1 libexpat1-dev_2.4.9-1 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libfontconfig1_2.13.1-4.5 libfreetype6_2.12.1+dfsg-3 libfribidi0_1.0.8-2.1 libgcc-12-dev_12.2.0-3+rpi1 libgcc-s1_12.2.0-3+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_12.2.0-3+rpi1 libglib2.0-0_2.74.0-3 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-2 libgomp1_12.2.0-3+rpi1 libgpg-error0_1.45-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20-1 libharfbuzz0b_5.2.0-2 libhogweed6_3.8.1-2 libhts3_1.16+ds-3 libhtscodecs2_1.3.0-4 libice6_2:1.0.10-1 libicu71_71.1-3 libidn2-0_2.3.3-1 libimagequant0_2.17.0-1 libisl23_0.25-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.1.2-1 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-jquery-ui_1.13.2+dfsg-1 libjs-sphinxdoc_4.5.0-4 libjs-underscore_1.13.4~dfsg+~1.11.4-1 libjson-perl_4.10000-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 liblapack3_3.10.1-2 liblbfgsb0_3.0+dfsg.3-11 liblcms2-2_2.13.1-1 libldap-2.5-0_2.5.13+dfsg-2+rpi1 liblerc4_4.0.0+ds-2 liblz4-1_1.9.4-1+rpi1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 libmount1_2.38.1-1.1 libmpc3_1.2.1-2 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.50.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libopenjp2-7_2.5.0-1 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpango-1.0-0_1.50.10+ds-1 libpangocairo-1.0-0_1.50.10+ds-1 libpangoft2-1.0-0_1.50.10+ds-1 libpaper-utils_1.1.28 libpaper1_1.1.28 libpcre2-8-0_10.40-1+b2 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libpipeline1_1.5.6-3 libpixman-1-0_0.40.0-1 libpng16-16_1.6.38-2 libpsl5_0.21.0-1.2 libpython3-all-dev_3.10.6-1 libpython3-dev_3.10.6-1 libpython3-stdlib_3.10.6-1 libpython3.10_3.10.7-2 libpython3.10-dev_3.10.7-2 libpython3.10-minimal_3.10.7-2 libpython3.10-stdlib_3.10.7-2 libqhull-r8.0_2020.2-5 libraqm0_0.7.0-4 libreadline8_8.2-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-8 libsasl2-modules-db_2.1.28+dfsg-8 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsm6_2:1.2.3-1 libsmartcols1_2.38.1-1.1 libsqlite3-0_3.39.4-1 libss2_1.46.6~rc1-1 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.5-4 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 libsub-override-perl_0.09-4 libsystemd0_251.5-1+rpi1 libtasn1-6_4.19.0-2 libtcl8.6_8.6.12+dfsg-1 libthai-data_0.1.29-1 libthai0_0.1.29-1 libtiff5_4.4.0-4 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtk8.6_8.6.12-1 libtool_2.4.7-4 libubsan1_12.2.0-3+rpi1 libuchardet0_0.0.7-1 libudev1_251.5-1+rpi1 libunistring2_1.0-2 libuuid1_2.38.1-1.1 libwebp7_1.2.2-2 libwebpdemux2_1.2.2-2 libwebpmux3_1.2.2-2 libx11-6_2:1.8.1-2 libx11-data_2:1.8.1-2 libxau6_1:1.0.9-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1 libxrender1_1:0.9.10-1.1 libxslt1.1_1.1.35-1 libxss1_1:1.2.3-1 libxt6_1:1.2.1-1 libxxhash0_0.8.1-1 libyaml-0-2_0.2.5-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.6-1+rpi1 login_1:4.12.3+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.0-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38.1-1.1 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 openssl_3.0.5-4 passwd_1:4.12.3+dfsg1-1 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.34_5.34.0-5 pinentry-curses_1.2.0-2 po-debconf_1.0.21+nmu1 python-babel-localedata_2.10.3-1 python-matplotlib-data_3.5.2-2 python3_3.10.6-1 python3-alabaster_0.7.12-1 python3-all_3.10.6-1 python3-all-dev_3.10.6-1 python3-appdirs_1.4.4-3 python3-attr_22.1.0-1 python3-babel_2.10.3-1 python3-brotli_1.0.9-2+b2 python3-certifi_2022.6.15-2 python3-chardet_4.0.0-2 python3-charset-normalizer_2.0.6-2 python3-cycler_0.11.0-1 python3-dateutil_2.8.2-1 python3-decorator_5.1.1-2 python3-dev_3.10.6-1 python3-distutils_3.10.7-1 python3-docutils_0.17.1+dfsg-2 python3-fonttools_4.37.4-1 python3-fs_2.4.16-2 python3-idna_3.3-1 python3-imagesize_1.4.1-1 python3-importlib-metadata_4.12.0-1 python3-iniconfig_1.1.1-2 python3-jinja2_3.0.3-2 python3-kiwisolver_1.3.2-1+b1 python3-lib2to3_3.10.7-1 python3-lxml_4.9.1-1 python3-lz4_4.0.2+dfsg-1 python3-markupsafe_2.1.1-1 python3-matplotlib_3.5.2-2 python3-minimal_3.10.6-1 python3-more-itertools_8.10.0-2 python3-mpmath_1.2.1-2 python3-numpy_1:1.21.5-1+b2 python3-numpydoc_1.5.0-1 python3-packaging_21.3-1.1 python3-pandas_1.3.5+dfsg-5 python3-pandas-lib_1.3.5+dfsg-5 python3-pil_9.2.0-1 python3-pil.imagetk_9.2.0-1 python3-pkg-resources_65.5.0-1 python3-pluggy_1.0.0+repack-1 python3-psutil_5.9.2-1 python3-py_1.11.0-1 python3-pygments_2.12.0+dfsg-2 python3-pyparsing_3.0.7-2 python3-pysam_0.17.0+ds-2+b1 python3-pytest_7.1.2-4 python3-requests_2.27.1+dfsg-1 python3-roman_3.3-1 python3-scipy_1.8.1-14+rpi1 python3-setuptools_65.5.0-1 python3-six_1.16.0-4 python3-snowballstemmer_2.2.0-2 python3-sphinx_4.5.0-4 python3-sympy_1.10.1-3 python3-tk_3.10.7-1 python3-tomli_2.0.1-1 python3-tz_2022.4-1 python3-ufolib2_0.13.1+dfsg1-1 python3-unicodedata2_14.0.0+ds2-1 python3-urllib3_1.26.12-1 python3-yaml_5.4.1-1+b1 python3-zipp_1.0.0-4 python3.10_3.10.7-2 python3.10-dev_3.10.7-2 python3.10-minimal_3.10.7-2 r-base-core_4.2.1-3 raspbian-archive-keyring_20120528.2 readline-common_8.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-pybedtools-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 sphinx-common_4.5.0-4 sysvinit-utils_3.05-6 tar_1.34+dfsg-1 tk8.6-blt2.5_2.5.3+dfsg-4.1 tzdata_2022d-1 ucf_3.0043 unicode-data_15.0.0-1 unzip_6.0-27 util-linux_2.38.1-1.1 util-linux-extra_2.38.1-1.1 x11-common_1:7.7+23 xdg-utils_1.1.3-4.1 xml-core_0.18+nmu1 xz-utils_5.2.5-2.1 zip_3.0-12 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.LmtQ2e5W/trustedkeys.kbx': General error
gpgv: Signature made Sun Oct 23 11:02:30 2022 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "nilesh@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./python-pybedtools_0.9.0-2.dsc
dpkg-source: info: extracting python-pybedtools in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-pybedtools_0.9.0.orig.tar.gz
dpkg-source: info: unpacking python-pybedtools_0.9.0-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying spelling
dpkg-source: info: applying define_filenotfounderror_python2.patch
dpkg-source: info: applying remove_badges_from_documentation.patch
dpkg-source: info: applying add_missing_shebang.patch
dpkg-source: info: applying yaml_safe_load.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-0cdabca4-6b9c-44f9-86b6-f80a243ee524
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-pybedtools
dpkg-buildpackage: info: source version 0.9.0-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3,sphinxdoc --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/bin/rm -rf fakehome .eggs .pybuild
/bin/rm -rf debian/python3-pybedtools debian/files
/bin/rm -rf pybedtools.egg-info
/bin/rm -rf pybedtools/scripts/__pycache__/
/bin/rm -rf pybedtools/contrib/__pycache__/
/bin/rm -rf pybedtools/__pycache__/
find pybedtools -name "*.so" -o -name "*.o" | xargs -r rm
rm -rf build
/bin/rm -rf pybedtools/cbedtools.cpp pybedtools/featurefuncs.cpp
find docs/source/autodocs/ -name "*.rst" | xargs -r /bin/rm
# dh_auto_clean
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3,sphinxdoc --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:240: python3.10 setup.py config
/usr/lib/python3/dist-packages/_distutils_hack/__init__.py:18: UserWarning: Distutils was imported before Setuptools, but importing Setuptools also replaces the `distutils` module in `sys.modules`. This may lead to undesirable behaviors or errors. To avoid these issues, avoid using distutils directly, ensure that setuptools is installed in the traditional way (e.g. not an editable install), and/or make sure that setuptools is always imported before distutils.
warnings.warn(
/usr/lib/python3/dist-packages/_distutils_hack/__init__.py:33: UserWarning: Setuptools is replacing distutils.
warnings.warn("Setuptools is replacing distutils.")
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
python3 setup.py cythonize
/usr/lib/python3/dist-packages/_distutils_hack/__init__.py:18: UserWarning: Distutils was imported before Setuptools, but importing Setuptools also replaces the `distutils` module in `sys.modules`. This may lead to undesirable behaviors or errors. To avoid these issues, avoid using distutils directly, ensure that setuptools is installed in the traditional way (e.g. not an editable install), and/or make sure that setuptools is always imported before distutils.
warnings.warn(
/usr/lib/python3/dist-packages/_distutils_hack/__init__.py:33: UserWarning: Setuptools is replacing distutils.
warnings.warn("Setuptools is replacing distutils.")
running cythonize
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/pybedtools/cbedtools.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/pybedtools/featurefuncs.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling pybedtools/cbedtools.pyx because it changed.
Compiling pybedtools/featurefuncs.pyx because it changed.
[1/2] Cythonizing pybedtools/cbedtools.pyx
[2/2] Cythonizing pybedtools/featurefuncs.pyx
dh_auto_build
I: pybuild base:240: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/_distutils_hack/__init__.py:18: UserWarning: Distutils was imported before Setuptools, but importing Setuptools also replaces the `distutils` module in `sys.modules`. This may lead to undesirable behaviors or errors. To avoid these issues, avoid using distutils directly, ensure that setuptools is installed in the traditional way (e.g. not an editable install), and/or make sure that setuptools is always imported before distutils.
warnings.warn(
/usr/lib/python3/dist-packages/_distutils_hack/__init__.py:33: UserWarning: Setuptools is replacing distutils.
warnings.warn("Setuptools is replacing distutils.")
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/bedtool.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/filenames.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/genome_registry.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/helpers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/logger.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/parallel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/paths.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/settings.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/genomepy_integration.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/regression_tests.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_1.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_cbedtools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_contrib.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_gzip_support.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_helpers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_issues.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_len_leak.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_pathlib.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/tfuncs.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_iter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/bigbed.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/intersection_matrix.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/long_range_interaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/venn_maker.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/bigwig.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/plotting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
running egg_info
creating pybedtools.egg-info
writing pybedtools.egg-info/PKG-INFO
writing dependency_links to pybedtools.egg-info/dependency_links.txt
writing requirements to pybedtools.egg-info/requires.txt
writing top-level names to pybedtools.egg-info/top_level.txt
writing manifest file 'pybedtools.egg-info/SOURCES.txt'
reading manifest file 'pybedtools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.c' under directory 'pybedtools'
warning: no previously-included files matching '__pycache__' found under directory '*'
warning: no previously-included files matching '*.py[co]' found under directory '*'
adding license file 'LICENSE.txt'
writing manifest file 'pybedtools.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pybedtools.include' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'pybedtools.include' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'pybedtools.include' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'pybedtools.include' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
copying pybedtools/_Window.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/cbedtools.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/cbedtools.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/cbedtools.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/featurefuncs.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
copying pybedtools/featurefuncs.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include
copying pybedtools/include/bedFile.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include
copying pybedtools/include/bedFile.h -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include
copying pybedtools/include/fileType.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include
copying pybedtools/include/fileType.h -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include
copying pybedtools/include/gzstream.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include
copying pybedtools/include/gzstream.h -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include
copying pybedtools/include/lineFileUtilities.h -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include
copying pybedtools/test/data/1000genomes-example.vcf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/164.gtf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/a.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/a.igv_script -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/a.links.html -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/b.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/bedpe.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/bedpe2.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/c.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/d.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/democonfig.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/exons.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/expand_test.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.1.100.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.1.100.bam.bai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.50.200.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.50.200.bam.bai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.cram -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.gff.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.othersort.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.sorted.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.sorted.bam.bai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/genome.fa -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/hg19.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/hg38-base.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/hg38-problem.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/issue319.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/issue319.out.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/issue319.vcf.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/issue_121.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/m1.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/mm9.bed12 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/multibamcov_test.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/reads.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/small.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/small.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/snps.bed.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/tag_test1.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/tag_test2.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test.fa -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test.fa.fai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test_bedpe.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test_peaks.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test_tsses.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/v.vcf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/vcf-stderr-test.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/vcf-stderr-test.vcf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/venn.b.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/venn.c.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/x.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/x.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/y.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data
copying pybedtools/test/gchart-expected.png -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/mpl-expected.png -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/prevent_open_file_regression -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_cases.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_merge215.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_merge227.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_shuffle215.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
copying pybedtools/test/test_shuffle227.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test
running build_ext
building 'pybedtools.cbedtools' extension
creating build
creating build/temp.linux-armhf-cpython-310
creating build/temp.linux-armhf-cpython-310/pybedtools
creating build/temp.linux-armhf-cpython-310/pybedtools/include
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/cbedtools.cpp -o build/temp.linux-armhf-cpython-310/pybedtools/cbedtools.o
In file included from pybedtools/cbedtools.cpp:796:
pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)':
pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
92 | for (register short i = 0; i < _binLevels; ++i) {
| ^
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armhf-cpython-310/pybedtools/include/bedFile.o
In file included from pybedtools/include/bedFile.cpp:12:
pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)':
pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
92 | for (register short i = 0; i < _binLevels; ++i) {
| ^
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/fileType.cpp -o build/temp.linux-armhf-cpython-310/pybedtools/include/fileType.o
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armhf-cpython-310/pybedtools/include/gzstream.o
arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-310/pybedtools/cbedtools.o build/temp.linux-armhf-cpython-310/pybedtools/include/bedFile.o build/temp.linux-armhf-cpython-310/pybedtools/include/fileType.o build/temp.linux-armhf-cpython-310/pybedtools/include/gzstream.o -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lz -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/cbedtools.cpython-310-arm-linux-gnueabihf.so
building 'pybedtools.featurefuncs' extension
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/featurefuncs.cpp -o build/temp.linux-armhf-cpython-310/pybedtools/featurefuncs.o
In file included from pybedtools/featurefuncs.cpp:796:
pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)':
pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
92 | for (register short i = 0; i < _binLevels; ++i) {
| ^
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armhf-cpython-310/pybedtools/include/bedFile.o
In file included from pybedtools/include/bedFile.cpp:12:
pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)':
pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
92 | for (register short i = 0; i < _binLevels; ++i) {
| ^
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/fileType.cpp -o build/temp.linux-armhf-cpython-310/pybedtools/include/fileType.o
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armhf-cpython-310/pybedtools/include/gzstream.o
arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-310/pybedtools/featurefuncs.o build/temp.linux-armhf-cpython-310/pybedtools/include/bedFile.o build/temp.linux-armhf-cpython-310/pybedtools/include/fileType.o build/temp.linux-armhf-cpython-310/pybedtools/include/gzstream.o -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lz -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/featurefuncs.cpython-310-arm-linux-gnueabihf.so
python3 setup.py develop --user
/usr/lib/python3/dist-packages/_distutils_hack/__init__.py:18: UserWarning: Distutils was imported before Setuptools, but importing Setuptools also replaces the `distutils` module in `sys.modules`. This may lead to undesirable behaviors or errors. To avoid these issues, avoid using distutils directly, ensure that setuptools is installed in the traditional way (e.g. not an editable install), and/or make sure that setuptools is always imported before distutils.
warnings.warn(
/usr/lib/python3/dist-packages/_distutils_hack/__init__.py:33: UserWarning: Setuptools is replacing distutils.
warnings.warn("Setuptools is replacing distutils.")
running develop
/usr/lib/python3/dist-packages/setuptools/command/easy_install.py:146: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running egg_info
writing pybedtools.egg-info/PKG-INFO
writing dependency_links to pybedtools.egg-info/dependency_links.txt
writing requirements to pybedtools.egg-info/requires.txt
writing top-level names to pybedtools.egg-info/top_level.txt
reading manifest file 'pybedtools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.c' under directory 'pybedtools'
warning: no previously-included files matching '__pycache__' found under directory '*'
warning: no previously-included files matching '*.py[co]' found under directory '*'
adding license file 'LICENSE.txt'
writing manifest file 'pybedtools.egg-info/SOURCES.txt'
running build_ext
building 'pybedtools.cbedtools' extension
creating build/temp.linux-armv7l-cpython-310
creating build/temp.linux-armv7l-cpython-310/pybedtools
creating build/temp.linux-armv7l-cpython-310/pybedtools/include
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/cbedtools.cpp -o build/temp.linux-armv7l-cpython-310/pybedtools/cbedtools.o
In file included from pybedtools/cbedtools.cpp:796:
pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)':
pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
92 | for (register short i = 0; i < _binLevels; ++i) {
| ^
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv7l-cpython-310/pybedtools/include/bedFile.o
In file included from pybedtools/include/bedFile.cpp:12:
pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)':
pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
92 | for (register short i = 0; i < _binLevels; ++i) {
| ^
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/fileType.cpp -o build/temp.linux-armv7l-cpython-310/pybedtools/include/fileType.o
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv7l-cpython-310/pybedtools/include/gzstream.o
arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-310/pybedtools/cbedtools.o build/temp.linux-armv7l-cpython-310/pybedtools/include/bedFile.o build/temp.linux-armv7l-cpython-310/pybedtools/include/fileType.o build/temp.linux-armv7l-cpython-310/pybedtools/include/gzstream.o -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lz -o /<<PKGBUILDDIR>>/pybedtools/cbedtools.cpython-310-arm-linux-gnueabihf.so
building 'pybedtools.featurefuncs' extension
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/featurefuncs.cpp -o build/temp.linux-armv7l-cpython-310/pybedtools/featurefuncs.o
In file included from pybedtools/featurefuncs.cpp:796:
pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)':
pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
92 | for (register short i = 0; i < _binLevels; ++i) {
| ^
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv7l-cpython-310/pybedtools/include/bedFile.o
In file included from pybedtools/include/bedFile.cpp:12:
pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)':
pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
92 | for (register short i = 0; i < _binLevels; ++i) {
| ^
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/fileType.cpp -o build/temp.linux-armv7l-cpython-310/pybedtools/include/fileType.o
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv7l-cpython-310/pybedtools/include/gzstream.o
arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-310/pybedtools/featurefuncs.o build/temp.linux-armv7l-cpython-310/pybedtools/include/bedFile.o build/temp.linux-armv7l-cpython-310/pybedtools/include/fileType.o build/temp.linux-armv7l-cpython-310/pybedtools/include/gzstream.o -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lz -o /<<PKGBUILDDIR>>/pybedtools/featurefuncs.cpython-310-arm-linux-gnueabihf.so
Creating /<<PKGBUILDDIR>>/fakehome/.local/lib/python3.10/site-packages/pybedtools.egg-link (link to .)
Adding pybedtools 0.9.0 to easy-install.pth file
Installed /<<PKGBUILDDIR>>
Processing dependencies for pybedtools==0.9.0
Searching for six==1.16.0
Best match: six 1.16.0
Adding six 1.16.0 to easy-install.pth file
Using /usr/lib/python3/dist-packages
Searching for pysam==0.17.0
Best match: pysam 0.17.0
Adding pysam 0.17.0 to easy-install.pth file
Using /usr/lib/python3/dist-packages
Finished processing dependencies for pybedtools==0.9.0
python3 setup.py build_sphinx
/usr/lib/python3/dist-packages/_distutils_hack/__init__.py:18: UserWarning: Distutils was imported before Setuptools, but importing Setuptools also replaces the `distutils` module in `sys.modules`. This may lead to undesirable behaviors or errors. To avoid these issues, avoid using distutils directly, ensure that setuptools is installed in the traditional way (e.g. not an editable install), and/or make sure that setuptools is always imported before distutils.
warnings.warn(
/usr/lib/python3/dist-packages/_distutils_hack/__init__.py:33: UserWarning: Setuptools is replacing distutils.
warnings.warn("Setuptools is replacing distutils.")
running build_sphinx
Running Sphinx v4.5.0
making output directory... done
[autosummary] generating autosummary for: 3-brief-examples.rst, FAQs.rst, autodoc_source.rst, changes.rst, create-a-bedtool-tutorial.rst, default-arguments.rst, each.rst, filtering.rst, flow-of-commands.rst, history.rst, ..., topical-create-a-bedtool.rst, topical-design-principles.rst, topical-documentation-contents.rst, topical-genome.rst, topical-iterators.rst, topical-low-level-ops.rst, topical-random.rst, topical-saving.rst, topical-wrapping.rst, tutorial-contents.rst
generated new fontManager
[autosummary] generating autosummary for: /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.absolute_distance.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.all_hits.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.annotate.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.any_hits.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.as_intervalfile.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.at.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_bed.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_fastq.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.bed6.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.bedpe_to_bam.rst, ..., /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.helpers.set_tempdir.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.parallel.parallel_apply.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.add_color.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.bedgraph_scale.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.extend_fields.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.five_prime.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.greater_than.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.less_than.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.normalized_to_length.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.three_prime.rst
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Possible hints:
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* AttributeError: type object 'Track' has no attribute 'Track'
* KeyError: 'Track'
* AttributeError: type object 'Track' has no attribute 'colorbar'
* ModuleNotFoundError: No module named 'Track'
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/<<PKGBUILDDIR>>/docs/source/topical-genome.rst:55: ERROR: Unknown target name: "genomepy<https://github.com/vanheeringen-lab/genomepy/>".
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/<<PKGBUILDDIR>>/pybedtools/bedtool.py:docstring of pybedtools.bedtool.BedTool._log_to_history.<locals>.decorated:9: WARNING: Could not lex literal_block as "python". Highlighting skipped.
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/<<PKGBUILDDIR>>/pybedtools/bedtool.py:docstring of pybedtools.bedtool.BedTool._log_to_history.<locals>.decorated:16: WARNING: Could not lex literal_block as "python". Highlighting skipped.
/<<PKGBUILDDIR>>/docs/source/default-arguments.rst:35: WARNING: Could not lex literal_block as "python". Highlighting skipped.
/<<PKGBUILDDIR>>/docs/source/topical-design-principles.rst:120: WARNING: unknown option: mergeBed -i
/<<PKGBUILDDIR>>/docs/source/topical-design-principles.rst:127: WARNING: unknown option: -i
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writing additional pages... search done
copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 9 warnings.
The HTML pages are in build/sphinx/html.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a -O--buildsystem=pybuild
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-pybedtools
/usr/lib/python3/dist-packages/_distutils_hack/__init__.py:18: UserWarning: Distutils was imported before Setuptools, but importing Setuptools also replaces the `distutils` module in `sys.modules`. This may lead to undesirable behaviors or errors. To avoid these issues, avoid using distutils directly, ensure that setuptools is installed in the traditional way (e.g. not an editable install), and/or make sure that setuptools is always imported before distutils.
warnings.warn(
/usr/lib/python3/dist-packages/_distutils_hack/__init__.py:33: UserWarning: Setuptools is replacing distutils.
warnings.warn("Setuptools is replacing distutils.")
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
copying pybedtools/version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools
running egg_info
writing pybedtools.egg-info/PKG-INFO
writing dependency_links to pybedtools.egg-info/dependency_links.txt
writing requirements to pybedtools.egg-info/requires.txt
writing top-level names to pybedtools.egg-info/top_level.txt
reading manifest file 'pybedtools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.c' under directory 'pybedtools'
warning: no previously-included files matching '__pycache__' found under directory '*'
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adding license file 'LICENSE.txt'
writing manifest file 'pybedtools.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pybedtools.include' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'pybedtools.include' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'pybedtools.include' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'pybedtools.include' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/bedtool.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/filenames.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/genome_registry.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/helpers.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/logger.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/parallel.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/paths.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/settings.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/stats.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/genomepy_integration.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/regression_tests.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_1.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_cbedtools.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_contrib.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_gzip_support.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_helpers.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_issues.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_len_leak.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_pathlib.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/tfuncs.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_iter.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/1000genomes-example.vcf -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/164.gtf -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/a.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/a.igv_script -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/a.links.html -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/b.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/bedpe.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/bedpe2.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/c.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/d.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/democonfig.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/exons.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/expand_test.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.1.100.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.1.100.bam.bai -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.50.200.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.50.200.bam.bai -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.cram -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.gff.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.othersort.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.sorted.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.sorted.bam.bai -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/genome.fa -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/hg19.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/hg38-base.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/hg38-problem.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/issue319.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/issue319.out.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/issue319.vcf.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/issue_121.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/m1.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/mm9.bed12 -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/multibamcov_test.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/reads.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/small.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/small.fastq -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/snps.bed.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/tag_test1.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/tag_test2.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/test.fa -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/test.fa.fai -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/test_bedpe.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/test_peaks.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/test_tsses.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/v.vcf -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/vcf-stderr-test.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/vcf-stderr-test.vcf -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/venn.b.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/venn.c.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/x.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/x.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/y.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/gchart-expected.png -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/mpl-expected.png -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/prevent_open_file_regression -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_cases.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_merge215.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_merge227.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_shuffle215.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_shuffle227.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/bigbed.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/intersection_matrix.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/long_range_interaction.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/venn_maker.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/bigwig.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/plotting.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/_Window.pyx -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/cbedtools.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/cbedtools.pxd -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/cbedtools.pyx -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/featurefuncs.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/featurefuncs.pyx -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/bedFile.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/bedFile.h -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/fileType.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/fileType.h -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/gzstream.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/gzstream.h -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/lineFileUtilities.h -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/cbedtools.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/featurefuncs.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/version.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/bedtool.py to bedtool.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/filenames.py to filenames.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/genome_registry.py to genome_registry.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/helpers.py to helpers.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/logger.py to logger.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/parallel.py to parallel.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/paths.py to paths.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/settings.py to settings.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/stats.py to stats.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/genomepy_integration.py to genomepy_integration.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/regression_tests.py to regression_tests.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_1.py to test_1.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_cbedtools.py to test_cbedtools.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_contrib.py to test_contrib.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_gzip_support.py to test_gzip_support.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_helpers.py to test_helpers.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_issues.py to test_issues.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_len_leak.py to test_len_leak.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_pathlib.py to test_pathlib.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/tfuncs.py to tfuncs.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_iter.py to test_iter.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/bigbed.py to bigbed.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/intersection_matrix.py to intersection_matrix.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/long_range_interaction.py to long_range_interaction.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/venn_maker.py to venn_maker.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/bigwig.py to bigwig.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/plotting.py to plotting.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/version.py to version.cpython-310.pyc
running install_egg_info
Copying pybedtools.egg-info to /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools-0.9.0.egg-info
Skipping SOURCES.txt
running install_scripts
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
rm -f debian/python3-pybedtools/usr/lib/python3*/dist-packages/pybedtools/test/prevent_open_file_regression
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_sphinxdoc -a -O--buildsystem=pybuild
dh_sphinxdoc: warning: Sphinx documentation not found
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installexamples -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pybedtools-dbgsym' in '../python3-pybedtools-dbgsym_0.9.0-2_armhf.deb'.
dpkg-deb: building package 'python3-pybedtools' in '../python3-pybedtools_0.9.0-2_armhf.deb'.
dpkg-genbuildinfo --build=any -O../python-pybedtools_0.9.0-2_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../python-pybedtools_0.9.0-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-10-28T15:53:58Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-pybedtools_0.9.0-2_armhf.changes:
----------------------------------------
Format: 1.8
Date: Sun, 23 Oct 2022 16:24:34 +0530
Source: python-pybedtools
Binary: python3-pybedtools python3-pybedtools-dbgsym
Architecture: armhf
Version: 0.9.0-2
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
python3-pybedtools - Python 3 wrapper around BEDTools for bioinformatics work
Closes: 1018560 1022076
Changes:
python-pybedtools (0.9.0-2) unstable; urgency=medium
.
* Team Upload.
* Add patch to replace yaml.load calls with
yaml.safe_load (Closes: #1022076)
* Change B-D from python3-nose to python3-pytest (Closes: #1018560)
* Bump Standards-Version to 4.6.1 (no changes needed)
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f175eb7a9b9970fba448bcedb2f4c80d29393530 1091848 python3-pybedtools-dbgsym_0.9.0-2_armhf.deb
ff1aafa790caaac45ad5ebb8f175295a124cb454 12140268 python3-pybedtools_0.9.0-2_armhf.deb
Checksums-Sha256:
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e98913be7a7f488940afe99a98483b51110fcbf33861be9e019cfed9b7ca8579 12140268 python3-pybedtools_0.9.0-2_armhf.deb
Files:
0f15da3cec7f9fd6c4e191ab731380ed 10502 python optional python-pybedtools_0.9.0-2_armhf.buildinfo
f15ba2a8c7dfc214a5c3d0fbb9f2079d 1091848 debug optional python3-pybedtools-dbgsym_0.9.0-2_armhf.deb
35689406f0fae06acaad85bda1ff5995 12140268 python optional python3-pybedtools_0.9.0-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-pybedtools-dbgsym_0.9.0-2_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 1091848 bytes: control archive=656 bytes.
455 bytes, 12 lines control
310 bytes, 3 lines md5sums
Package: python3-pybedtools-dbgsym
Source: python-pybedtools
Version: 0.9.0-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1169
Depends: python3-pybedtools (= 0.9.0-2)
Section: debug
Priority: optional
Description: debug symbols for python3-pybedtools
Build-Ids: a3d4d339bb54b63eec61af2aee18655bef562477 fd3f73292d0c0a59658386e240d63b88e9668c8b
drwxr-xr-x root/root 0 2022-10-23 10:54 ./
drwxr-xr-x root/root 0 2022-10-23 10:54 ./usr/
drwxr-xr-x root/root 0 2022-10-23 10:54 ./usr/lib/
drwxr-xr-x root/root 0 2022-10-23 10:54 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-10-23 10:54 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-10-23 10:54 ./usr/lib/debug/.build-id/a3/
-rw-r--r-- root/root 357080 2022-10-23 10:54 ./usr/lib/debug/.build-id/a3/d4d339bb54b63eec61af2aee18655bef562477.debug
drwxr-xr-x root/root 0 2022-10-23 10:54 ./usr/lib/debug/.build-id/fd/
-rw-r--r-- root/root 719904 2022-10-23 10:54 ./usr/lib/debug/.build-id/fd/3f73292d0c0a59658386e240d63b88e9668c8b.debug
drwxr-xr-x root/root 0 2022-10-23 10:54 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2022-10-23 10:54 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 104492 2022-10-23 10:54 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-pybedtools.debug
drwxr-xr-x root/root 0 2022-10-23 10:54 ./usr/share/
drwxr-xr-x root/root 0 2022-10-23 10:54 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-10-23 10:54 ./usr/share/doc/python3-pybedtools-dbgsym -> python3-pybedtools
python3-pybedtools_0.9.0-2_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 12140268 bytes: control archive=4436 bytes.
786 bytes, 17 lines control
12494 bytes, 128 lines md5sums
283 bytes, 12 lines * postinst #!/bin/sh
396 bytes, 12 lines * prerm #!/bin/sh
Package: python3-pybedtools
Source: python-pybedtools
Version: 0.9.0-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 17145
Depends: python3 (<< 3.11), python3 (>= 3.10~), python3-pysam, python3-six, python3:any, libc6 (>= 2.33), libgcc-s1 (>= 3.5), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4)
Suggests: python-pybedtools-doc
Section: python
Priority: optional
Homepage: https://daler.github.io/pybedtools/
Description: Python 3 wrapper around BEDTools for bioinformatics work
The BEDTools suite of programs is widely used for genomic interval
manipulation or “genome algebra”. pybedtools wraps and extends BEDTools and
offers feature-level manipulations from within Python.
.
This is the Python 3 version.
drwxr-xr-x root/root 0 2022-10-23 10:54 ./
drwxr-xr-x root/root 0 2022-10-23 10:54 ./usr/
drwxr-xr-x root/root 0 2022-10-23 10:54 ./usr/lib/
drwxr-xr-x root/root 0 2022-10-23 10:54 ./usr/lib/python3/
drwxr-xr-x root/root 0 2022-10-23 10:54 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2022-10-23 10:54 ./usr/lib/python3/dist-packages/pybedtools-0.9.0.egg-info/
-rw-r--r-- root/root 3069 2022-10-23 10:54 ./usr/lib/python3/dist-packages/pybedtools-0.9.0.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2022-10-23 10:54 ./usr/lib/python3/dist-packages/pybedtools-0.9.0.egg-info/dependency_links.txt
-rw-r--r-- root/root 1 2022-10-23 10:54 ./usr/lib/python3/dist-packages/pybedtools-0.9.0.egg-info/not-zip-safe
-rw-r--r-- root/root 0 2022-10-23 10:54 ./usr/lib/python3/dist-packages/pybedtools-0.9.0.egg-info/requires.txt
-rw-r--r-- root/root 11 2022-10-23 10:54 ./usr/lib/python3/dist-packages/pybedtools-0.9.0.egg-info/top_level.txt
drwxr-xr-x root/root 0 2022-10-23 10:54 ./usr/lib/python3/dist-packages/pybedtools/
-rw-r--r-- root/root 7588 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/_Window.pyx
-rw-r--r-- root/root 3948 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/__init__.py
-rw-r--r-- root/root 133841 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/bedtool.py
-rw-r--r-- root/root 951278 2022-10-23 10:54 ./usr/lib/python3/dist-packages/pybedtools/cbedtools.cpp
-rw-r--r-- root/root 273656 2022-10-23 10:54 ./usr/lib/python3/dist-packages/pybedtools/cbedtools.cpython-310-arm-linux-gnueabihf.so
-rw-r--r-- root/root 2653 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/cbedtools.pxd
-rw-r--r-- root/root 31735 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/cbedtools.pyx
drwxr-xr-x root/root 0 2022-10-23 10:54 ./usr/lib/python3/dist-packages/pybedtools/contrib/
-rw-r--r-- root/root 156 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/contrib/__init__.py
-rw-r--r-- root/root 2296 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/contrib/bigbed.py
-rw-r--r-- root/root 6221 2022-10-23 10:54 ./usr/lib/python3/dist-packages/pybedtools/contrib/bigwig.py
-rw-r--r-- root/root 7563 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/contrib/intersection_matrix.py
-rw-r--r-- root/root 16497 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/contrib/long_range_interaction.py
-rw-r--r-- root/root 19833 2022-10-23 10:54 ./usr/lib/python3/dist-packages/pybedtools/contrib/plotting.py
-rw-r--r-- root/root 7622 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/contrib/venn_maker.py
-rw-r--r-- root/root 450302 2022-10-23 10:54 ./usr/lib/python3/dist-packages/pybedtools/featurefuncs.cpp
-rw-r--r-- root/root 205692 2022-10-23 10:54 ./usr/lib/python3/dist-packages/pybedtools/featurefuncs.cpython-310-arm-linux-gnueabihf.so
-rw-r--r-- root/root 10686 2022-10-23 10:54 ./usr/lib/python3/dist-packages/pybedtools/featurefuncs.pyx
-rw-r--r-- root/root 1356 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/filenames.py
-rw-r--r-- root/root 112873 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/genome_registry.py
-rw-r--r-- root/root 26419 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/helpers.py
drwxr-xr-x root/root 0 2022-10-23 10:54 ./usr/lib/python3/dist-packages/pybedtools/include/
-rw-r--r-- root/root 14196 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/include/bedFile.cpp
-rw-r--r-- root/root 20369 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/include/bedFile.h
-rw-r--r-- root/root 1735 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/include/fileType.cpp
-rw-r--r-- root/root 1065 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/include/fileType.h
-rw-r--r-- root/root 5093 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/include/gzstream.cpp
-rw-r--r-- root/root 4603 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/include/gzstream.h
-rw-r--r-- root/root 1189 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/include/lineFileUtilities.h
-rw-r--r-- root/root 325 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/logger.py
-rw-r--r-- root/root 7803 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/parallel.py
-rw-r--r-- root/root 590 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/paths.py
-rw-r--r-- root/root 2394 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/settings.py
-rw-r--r-- root/root 818 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/stats.py
drwxr-xr-x root/root 0 2022-10-23 10:54 ./usr/lib/python3/dist-packages/pybedtools/test/
-rw-r--r-- root/root 417 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/test/__init__.py
drwxr-xr-x root/root 0 2022-10-23 10:54 ./usr/lib/python3/dist-packages/pybedtools/test/data/
-rw-r--r-- root/root 1501 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/test/data/1000genomes-example.vcf
-rw-r--r-- root/root 412 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/test/data/164.gtf
-rw-r--r-- root/root 68290 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed
-rw-r--r-- root/root 68576 2022-01-24 13:42 ./usr/lib/python3/dist-packages/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 90756
Build-Time: 832
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1864
Job: python-pybedtools_0.9.0-2
Machine Architecture: armhf
Package: python-pybedtools
Package-Time: 2758
Source-Version: 0.9.0-2
Space: 90756
Status: successful
Version: 0.9.0-2
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Finished at 2022-10-28T15:53:58Z
Build needed 00:45:58, 90756k disc space