Raspbian Package Auto-Building

python-pybedtools → 0.8.2-1 → armhf → 2021-10-23 07:13:48

sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02

+==============================================================================+
| python-pybedtools 0.8.2-1 (armhf)            Sat, 23 Oct 2021 06:54:02 +0000 |
+==============================================================================+

Package: python-pybedtools
Version: 0.8.2-1
Source Version: 0.8.2-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-cead1762-7766-43eb-bedc-2545e5d63f69' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.9 MB in 10s (2648 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'python-pybedtools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-pybedtools.git
Please use:
git clone https://salsa.debian.org/med-team/python-pybedtools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 12.5 MB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main python-pybedtools 0.8.2-1 (dsc) [2524 B]
Get:2 http://172.17.0.1/private bookworm-staging/main python-pybedtools 0.8.2-1 (tar) [12.5 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main python-pybedtools 0.8.2-1 (diff) [29.1 kB]
Fetched 12.5 MB in 2s (6941 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-pybedtools-AABTvg/python-pybedtools-0.8.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-pybedtools-AABTvg' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-4EchF9/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-4EchF9/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-4EchF9/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-4EchF9/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-4EchF9/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-4EchF9/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-4EchF9/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-4EchF9/apt_archive ./ Packages [434 B]
Fetched 2110 B in 0s (10.0 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 39 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-4EchF9/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (66.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12484 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-python, bedtools, cython3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-nose, python3-numpy, python3-numpydoc, python3-pandas, python3-psutil, python3-pytest, python3-yaml, python3-tk, python3-sphinx, r-base-core, zlib1g-dev
Filtered Build-Depends: debhelper-compat (= 13), dh-python, bedtools, cython3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-nose, python3-numpy, python3-numpydoc, python3-pandas, python3-psutil, python3-pytest, python3-yaml, python3-tk, python3-sphinx, r-base-core, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-python-pybedtools-dummy' in '/<<BUILDDIR>>/resolver-4EchF9/apt_archive/sbuild-build-depends-python-pybedtools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-python-pybedtools-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-4EchF9/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-4EchF9/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-4EchF9/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-4EchF9/apt_archive ./ Sources [602 B]
Get:5 copy:/<<BUILDDIR>>/resolver-4EchF9/apt_archive ./ Packages [684 B]
Fetched 2619 B in 0s (12.3 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install python-pybedtools build dependencies (apt-based resolver)
-----------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bedtools blt bsdextrautils
  ca-certificates cython3 debhelper dh-autoreconf dh-python
  dh-strip-nondeterminism docutils-common dwz file fontconfig
  fontconfig-config fonts-lyx gcc-11-base gettext gettext-base groff-base
  intltool-debian libarchive-zip-perl libasan6 libatomic1 libblas3 libbrotli1
  libbsd0 libcairo2 libcc1-0 libcurl3-gnutls libcurl4 libdatrie1
  libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev libffi8
  libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
  libgcc-s1 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b
  libhts3 libhtscodecs2 libice6 libicu67 libimagequant0 libjbig0
  libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc
  libjs-underscore liblapack3 liblcms2-2 libmagic-mgc libmagic1 libmd0
  libmpdec3 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
  libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpng16-16 libpsl5
  libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.9
  libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib librtmp1
  libsigsegv2 libsm6 libssh2-1 libstdc++6 libsub-override-perl libtcl8.6
  libthai-data libthai0 libtiff5 libtk8.6 libtool libubsan1 libuchardet0
  libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6
  libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
  libxrender1 libxss1 libxt6 libyaml-0-2 m4 mailcap man-db media-types
  mime-support openssl po-debconf python-babel-localedata
  python-matplotlib-data python3 python3-alabaster python3-all python3-all-dev
  python3-attr python3-babel python3-certifi python3-chardet python3-cycler
  python3-dateutil python3-dev python3-distutils python3-docutils python3-idna
  python3-imagesize python3-importlib-metadata python3-iniconfig
  python3-jinja2 python3-kiwisolver python3-lib2to3 python3-markupsafe
  python3-matplotlib python3-minimal python3-more-itertools python3-nose
  python3-numpy python3-numpydoc python3-packaging python3-pandas
  python3-pandas-lib python3-pil python3-pkg-resources python3-pluggy
  python3-psutil python3-py python3-pygments python3-pyparsing python3-pysam
  python3-pytest python3-requests python3-roman python3-setuptools python3-six
  python3-snowballstemmer python3-sphinx python3-tk python3-toml python3-tz
  python3-urllib3 python3-yaml python3-zipp python3.9 python3.9-dev
  python3.9-minimal r-base-core sensible-utils sgml-base sphinx-common
  tk8.6-blt2.5 ttf-bitstream-vera ucf unzip x11-common xdg-utils xml-core zip
  zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc blt-demo cython-doc dh-make flit
  gettext-doc libasprintf-dev libgettextpo-dev groff libjs-jquery-ui-docs
  liblcms2-utils tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler
  gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc
  python3-venv python-attr-doc python-cycler-doc docutils-doc
  fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french
  texlive-latex-base texlive-latex-recommended python-jinja2-doc dvipng ffmpeg
  ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common
  python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo
  python3-gobject python3-pyqt5 python3-scipy python3-sip python3-tornado
  texlive-extra-utils texlive-latex-extra ttf-staypuft python-nose-doc
  gfortran python-numpy-doc python3-numpy-dbg python-pandas-doc
  python3-statsmodels python-pil-doc python3-pil-dbg python-psutil-doc
  subversion python-pygments-doc python-pyparsing-doc python3-cryptography
  python3-openssl python3-socks python-requests-doc python-setuptools-doc
  python3-stemmer fonts-freefont-otf imagemagick-6.q16 latexmk libjs-mathjax
  python3-sphinx-rtd-theme sphinx-doc tex-gyre texlive-fonts-recommended
  texlive-plain-generic tix python3-tk-dbg python3.9-venv python3.9-doc
  binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
  sgml-base-doc
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs javascript-common publicsuffix libltdl-dev
  libmail-sendmail-perl python3-scipy python3-bottleneck python3-numexpr
  python3-odf python3-openpyxl python3-xlwt python3-bs4 python3-html5lib
  python3-lxml python3-tables python3-olefile r-recommended r-base-dev
  r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
  x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bedtools blt bsdextrautils
  ca-certificates cython3 debhelper dh-autoreconf dh-python
  dh-strip-nondeterminism docutils-common dwz file fontconfig
  fontconfig-config fonts-lyx gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcairo2 libcurl3-gnutls
  libcurl4 libdatrie1 libdebhelper-perl libdeflate0 libelf1 libexpat1
  libexpat1-dev libffi8 libfile-stripnondeterminism-perl libfontconfig1
  libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3
  libharfbuzz0b libhts3 libhtscodecs2 libice6 libicu67 libimagequant0 libjbig0
  libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc
  libjs-underscore liblapack3 liblcms2-2 libmagic-mgc libmagic1 libmd0
  libmpdec3 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
  libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpng16-16 libpsl5
  libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.9
  libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib librtmp1
  libsigsegv2 libsm6 libssh2-1 libsub-override-perl libtcl8.6 libthai-data
  libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwebpdemux2
  libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1
  libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 libyaml-0-2 m4
  mailcap man-db media-types mime-support openssl po-debconf
  python-babel-localedata python-matplotlib-data python3 python3-alabaster
  python3-all python3-all-dev python3-attr python3-babel python3-certifi
  python3-chardet python3-cycler python3-dateutil python3-dev
  python3-distutils python3-docutils python3-idna python3-imagesize
  python3-importlib-metadata python3-iniconfig python3-jinja2
  python3-kiwisolver python3-lib2to3 python3-markupsafe python3-matplotlib
  python3-minimal python3-more-itertools python3-nose python3-numpy
  python3-numpydoc python3-packaging python3-pandas python3-pandas-lib
  python3-pil python3-pkg-resources python3-pluggy python3-psutil python3-py
  python3-pygments python3-pyparsing python3-pysam python3-pytest
  python3-requests python3-roman python3-setuptools python3-six
  python3-snowballstemmer python3-sphinx python3-tk python3-toml python3-tz
  python3-urllib3 python3-yaml python3-zipp python3.9 python3.9-dev
  python3.9-minimal r-base-core sbuild-build-depends-python-pybedtools-dummy
  sensible-utils sgml-base sphinx-common tk8.6-blt2.5 ttf-bitstream-vera ucf
  unzip x11-common xdg-utils xml-core zip zlib1g-dev
The following packages will be upgraded:
  gcc-11-base libasan6 libatomic1 libcc1-0 libgcc-s1 libgomp1 libstdc++6
  libubsan1
8 upgraded, 185 newly installed, 0 to remove and 31 not upgraded.
Need to get 106 MB of archives.
After this operation, 335 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-4EchF9/apt_archive ./ sbuild-build-depends-python-pybedtools-dummy 0.invalid.0 [972 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-3 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libasan6 armhf 11.2.0-9+rpi1 [1947 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf libubsan1 armhf 11.2.0-9+rpi1 [798 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libgomp1 armhf 11.2.0-9+rpi1 [88.0 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf gcc-11-base armhf 11.2.0-9+rpi1 [206 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libgcc-s1 armhf 11.2.0-9+rpi1 [36.2 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libcc1-0 armhf 11.2.0-9+rpi1 [38.0 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libatomic1 armhf 11.2.0-9+rpi1 [8184 B]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf libstdc++6 armhf 11.2.0-9+rpi1 [466 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.7-4+rpi1 [794 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-2 [80.3 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.7-4+rpi1 [1632 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf media-types all 4.0.0 [30.3 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf mailcap all 3.70 [31.8 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libffi8 armhf 3.4.2-3 [21.3 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.7-4+rpi1 [1618 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf python3.9 armhf 3.9.7-4+rpi1 [480 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf python3 armhf 3.9.2-3 [37.9 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf sgml-base all 1.30 [15.1 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.4-2 [819 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf bedtools armhf 2.30.0+dfsg-2 [516 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.11+dfsg-1 [894 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf libfreetype6 armhf 2.11.0+dfsg-1 [386 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf ttf-bitstream-vera all 1.10-8.1 [223 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.11.1-1 [681 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [477 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf openssl armhf 1.1.1l-1 [815 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf ca-certificates all 20210119 [158 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf cython3 armhf 0.29.21-3+b1 [1234 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-2 [26.3 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-2 [15.5 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.7-1 [79.4 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf python3-distutils all 3.9.7-1 [146 kB]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf dh-python all 5.20211016.1 [103 kB]
Get:85 http://172.17.0.1/private bookworm-staging/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get:86 http://172.17.0.1/private bookworm-staging/main armhf docutils-common all 0.17.1+dfsg-2 [127 kB]
Get:87 http://172.17.0.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:88 http://172.17.0.1/private bookworm-staging/main armhf fonts-lyx all 2.3.6-1 [205 kB]
Get:89 http://172.17.0.1/private bookworm-staging/main armhf libblas3 armhf 3.10.0-1 [108 kB]
Get:90 http://172.17.0.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:91 http://172.17.0.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.14-3 [110 kB]
Get:92 http://172.17.0.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get:93 http://172.17.0.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-5 [602 kB]
Get:94 http://172.17.0.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:95 http://172.17.0.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:96 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:97 http://172.17.0.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:98 http://172.17.0.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.74.0-1.3 [301 kB]
Get:99 http://172.17.0.1/private bookworm-staging/main armhf libcurl4 armhf 7.74.0-1.3 [305 kB]
Get:100 http://172.17.0.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2 [39.7 kB]
Get:101 http://172.17.0.1/private bookworm-staging/main armhf libdeflate0 armhf 1.8-1 [44.1 kB]
Get:102 http://172.17.0.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.1-2 [135 kB]
Get:103 http://172.17.0.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:104 http://172.17.0.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-9+rpi1 [235 kB]
Get:105 http://172.17.0.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.70.0-1 [1208 kB]
Get:106 http://172.17.0.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:107 http://172.17.0.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:108 http://172.17.0.1/private bookworm-staging/main armhf libhtscodecs2 armhf 1.1.1-3 [49.8 kB]
Get:109 http://172.17.0.1/private bookworm-staging/main armhf libhts3 armhf 1.13+ds-2 [339 kB]
Get:110 http://172.17.0.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:111 http://172.17.0.1/private bookworm-staging/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB]
Get:112 http://172.17.0.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:113 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [122 kB]
Get:114 http://172.17.0.1/private bookworm-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB]
Get:115 http://172.17.0.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB]
Get:116 http://172.17.0.1/private bookworm-staging/main armhf libjs-underscore all 1.9.1~dfsg-4 [100 kB]
Get:117 http://172.17.0.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.2.0-4 [137 kB]
Get:118 http://172.17.0.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.0-1 [1594 kB]
Get:119 http://172.17.0.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.12~rc1-2 [121 kB]
Get:120 http://172.17.0.1/private bookworm-staging/main armhf libthai-data all 0.1.28-4.1 [171 kB]
Get:121 http://172.17.0.1/private bookworm-staging/main armhf libthai0 armhf 0.1.28-4.1 [51.4 kB]
Get:122 http://172.17.0.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.48.10+ds1-1 [184 kB]
Get:123 http://172.17.0.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.48.10+ds1-1 [66.6 kB]
Get:124 http://172.17.0.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.48.10+ds1-1 [56.8 kB]
Get:125 http://172.17.0.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:126 http://172.17.0.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:127 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.7-4+rpi1 [1416 kB]
Get:128 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:129 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-dev armhf 3.9.7-4+rpi1 [3060 kB]
Get:130 http://172.17.0.1/private bookworm-staging/main armhf libpython3-dev armhf 3.9.2-3 [21.7 kB]
Get:131 http://172.17.0.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.9.2-3 [1068 B]
Get:132 http://172.17.0.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:133 http://172.17.0.1/private bookworm-staging/main armhf libwebp6 armhf 0.6.1-2.1 [225 kB]
Get:134 http://172.17.0.1/private bookworm-staging/main armhf libtiff5 armhf 4.3.0-2 [272 kB]
Get:135 http://172.17.0.1/private bookworm-staging/main armhf libwebpdemux2 armhf 0.6.1-2.1 [86.8 kB]
Get:136 http://172.17.0.1/private bookworm-staging/main armhf libwebpmux3 armhf 0.6.1-2.1 [94.4 kB]
Get:137 http://172.17.0.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.0-1 [159 kB]
Get:138 http://172.17.0.1/private bookworm-staging/main armhf libyaml-0-2 armhf 0.2.2-1 [40.0 kB]
Get:139 http://172.17.0.1/private bookworm-staging/main armhf python-babel-localedata all 2.8.0+dfsg.1-7 [4997 kB]
Get:140 http://172.17.0.1/private bookworm-staging/main armhf python-matplotlib-data all 3.3.4-2 [4154 kB]
Get:141 http://172.17.0.1/private bookworm-staging/main armhf python3-alabaster all 0.7.12-1 [20.8 kB]
Get:142 http://172.17.0.1/private bookworm-staging/main armhf python3-all armhf 3.9.2-3 [1056 B]
Get:143 http://172.17.0.1/private bookworm-staging/main armhf python3.9-dev armhf 3.9.7-4+rpi1 [501 kB]
Get:144 http://172.17.0.1/private bookworm-staging/main armhf python3-dev armhf 3.9.2-3 [24.8 kB]
Get:145 http://172.17.0.1/private bookworm-staging/main armhf python3-all-dev armhf 3.9.2-3 [1064 B]
Get:146 http://172.17.0.1/private bookworm-staging/main armhf python3-attr all 20.3.0-1 [52.9 kB]
Get:147 http://172.17.0.1/private bookworm-staging/main armhf python3-pkg-resources all 58.2.0-1 [192 kB]
Get:148 http://172.17.0.1/private bookworm-staging/main armhf python3-tz all 2021.3-1 [34.9 kB]
Get:149 http://172.17.0.1/private bookworm-staging/main armhf python3-babel all 2.8.0+dfsg.1-7 [100 kB]
Get:150 http://172.17.0.1/private bookworm-staging/main armhf python3-certifi all 2020.6.20-1 [151 kB]
Get:151 http://172.17.0.1/private bookworm-staging/main armhf python3-chardet all 4.0.0-1 [99.0 kB]
Get:152 http://172.17.0.1/private bookworm-staging/main armhf python3-six all 1.16.0-2 [17.5 kB]
Get:153 http://172.17.0.1/private bookworm-staging/main armhf python3-cycler all 0.10.0-3 [8084 B]
Get:154 http://172.17.0.1/private bookworm-staging/main armhf python3-dateutil all 2.8.1-6 [79.2 kB]
Get:155 http://172.17.0.1/private bookworm-staging/main armhf python3-roman all 2.0.0-5 [9064 B]
Get:156 http://172.17.0.1/private bookworm-staging/main armhf python3-docutils all 0.17.1+dfsg-2 [393 kB]
Get:157 http://172.17.0.1/private bookworm-staging/main armhf python3-idna all 2.10-1 [37.4 kB]
Get:158 http://172.17.0.1/private bookworm-staging/main armhf python3-imagesize all 1.2.0-2 [5824 B]
Get:159 http://172.17.0.1/private bookworm-staging/main armhf python3-more-itertools all 4.2.0-3 [42.7 kB]
Get:160 http://172.17.0.1/private bookworm-staging/main armhf python3-zipp all 1.0.0-3 [6060 B]
Get:161 http://172.17.0.1/private bookworm-staging/main armhf python3-importlib-metadata all 4.6.4-1 [22.5 kB]
Get:162 http://172.17.0.1/private bookworm-staging/main armhf python3-iniconfig all 1.1.1-1 [6308 B]
Get:163 http://172.17.0.1/private bookworm-staging/main armhf python3-markupsafe armhf 2.0.1-2 [13.1 kB]
Get:164 http://172.17.0.1/private bookworm-staging/main armhf python3-jinja2 all 3.0.1-2 [121 kB]
Get:165 http://172.17.0.1/private bookworm-staging/main armhf python3-kiwisolver armhf 1.3.2-1 [45.8 kB]
Get:166 http://172.17.0.1/private bookworm-staging/main armhf python3-pyparsing all 2.4.7-1 [109 kB]
Get:167 http://172.17.0.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.19.5-1 [2930 kB]
Get:168 http://172.17.0.1/private bookworm-staging/main armhf python3-pil armhf 8.1.2+dfsg-0.3 [410 kB]
Get:169 http://172.17.0.1/private bookworm-staging/main armhf python3-matplotlib armhf 3.3.4-2 [6035 kB]
Get:170 http://172.17.0.1/private bookworm-staging/main armhf python3-nose all 1.3.7-7 [133 kB]
Get:171 http://172.17.0.1/private bookworm-staging/main armhf sphinx-common all 4.2.0-4 [622 kB]
Get:172 http://172.17.0.1/private bookworm-staging/main armhf python3-packaging all 21.0-1 [33.5 kB]
Get:173 http://172.17.0.1/private bookworm-staging/main armhf python3-pygments all 2.7.1+dfsg-2.1 [657 kB]
Get:174 http://172.17.0.1/private bookworm-staging/main armhf python3-urllib3 all 1.26.5-1~exp1 [114 kB]
Get:175 http://172.17.0.1/private bookworm-staging/main armhf python3-requests all 2.25.1+dfsg-2 [69.3 kB]
Get:176 http://172.17.0.1/private bookworm-staging/main armhf python3-snowballstemmer all 2.1.0-2 [58.8 kB]
Get:177 http://172.17.0.1/private bookworm-staging/main armhf python3-sphinx all 4.2.0-4 [529 kB]
Get:178 http://172.17.0.1/private bookworm-staging/main armhf python3-numpydoc all 1.1.0-3 [40.0 kB]
Get:179 http://172.17.0.1/private bookworm-staging/main armhf python3-pandas-lib armhf 1.1.5+dfsg-2 [2863 kB]
Get:180 http://172.17.0.1/private bookworm-staging/main armhf python3-pandas all 1.1.5+dfsg-2 [2096 kB]
Get:181 http://172.17.0.1/private bookworm-staging/main armhf python3-pluggy all 0.13.0-6 [22.3 kB]
Get:182 http://172.17.0.1/private bookworm-staging/main armhf python3-psutil armhf 5.8.0-2 [183 kB]
Get:183 http://172.17.0.1/private bookworm-staging/main armhf python3-py all 1.10.0-1 [94.2 kB]
Get:184 http://172.17.0.1/private bookworm-staging/main armhf python3-pysam armhf 0.17.0+ds-2 [1411 kB]
Get:185 http://172.17.0.1/private bookworm-staging/main armhf python3-toml all 0.10.2-1 [16.2 kB]
Get:186 http://172.17.0.1/private bookworm-staging/main armhf python3-pytest all 6.2.5-1 [218 kB]
Get:187 http://172.17.0.1/private bookworm-staging/main armhf python3-setuptools all 58.2.0-1 [396 kB]
Get:188 http://172.17.0.1/private bookworm-staging/main armhf python3-tk armhf 3.9.7-1 [104 kB]
Get:189 http://172.17.0.1/private bookworm-staging/main armhf python3-yaml armhf 5.4.1-1 [118 kB]
Get:190 http://172.17.0.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:191 http://172.17.0.1/private bookworm-staging/main armhf unzip armhf 6.0-26 [151 kB]
Get:192 http://172.17.0.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:193 http://172.17.0.1/private bookworm-staging/main armhf r-base-core armhf 4.1.1-2 [25.3 MB]
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Setting up libhtscodecs2:armhf (1.1.1-3) ...
Setting up media-types (4.0.0) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up liblcms2-2:armhf (2.12~rc1-2) ...
Setting up libpixman-1-0:armhf (0.40.0-1) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up ttf-bitstream-vera (1.10-8.1) ...
Setting up bsdextrautils (2.37.2-3) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libicu67:armhf (67.1-7) ...
Setting up libdatrie1:armhf (0.2.13-2) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libyaml-0-2:armhf (0.2.2-1) ...
Setting up fonts-lyx (2.3.6-1) ...
Setting up unzip (6.0-26) ...
Setting up libdebhelper-perl (13.5.2) ...
Setting up libbrotli1:armhf (1.0.9-2+b1) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libnghttp2-14:armhf (1.43.0-1) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up libdeflate0:armhf (1.8-1) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.39-3) ...
Setting up libgomp1:armhf (11.2.0-9+rpi1) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up python-babel-localedata (2.8.0+dfsg.1-7) ...
Setting up libasan6:armhf (11.2.0-9+rpi1) ...
Setting up zip (3.0-12) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libblas3:armhf (3.10.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libexpat1-dev:armhf (2.4.1-2) ...
Setting up libjpeg62-turbo:armhf (1:2.0.6-4) ...
Setting up libx11-data (2:1.7.2-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up libfribidi0:armhf (1.0.8-2) ...
Setting up libimagequant0:armhf (2.12.2-1.1) ...
Setting up libpng16-16:armhf (1.6.37-3) ...
Setting up libatomic1:armhf (11.2.0-9+rpi1) ...
Setting up libtcl8.6:armhf (8.6.11+dfsg-1) ...
Setting up autopoint (0.21-4) ...
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Setting up libgfortran5:armhf (11.2.0-9+rpi1) ...
Setting up libubsan1:armhf (11.2.0-9+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
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Setting up libmd0:armhf (1.0.4-1) ...
Setting up sensible-utils (0.0.17) ...
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Setting up libmpdec3:armhf (2.5.1-2+rpi1) ...
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Setting up libthai-data (0.1.28-4.1) ...
Setting up libssh2-1:armhf (1.10.0-2) ...
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Setting up libtiff5:armhf (4.3.0-2) ...
Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ...
Setting up python-matplotlib-data (3.3.4-2) ...
Setting up openssl (1.1.1l-1) ...
Setting up libwebpmux3:armhf (0.6.1-2.1) ...
Setting up libbsd0:armhf (0.11.3-1) ...
Setting up mailcap (3.70) ...
Setting up libelf1:armhf (0.185-2) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up bedtools (2.30.0+dfsg-2) ...
Setting up libcc1-0:armhf (11.2.0-9+rpi1) ...
Setting up libpython3.9-stdlib:armhf (3.9.7-4+rpi1) ...
Setting up libpython3-stdlib:armhf (3.9.2-3) ...
Setting up libjs-underscore (1.9.1~dfsg-4) ...
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Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.10.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.14-3) ...
Setting up gettext (0.21-4) ...
Setting up mime-support (3.66) ...
Setting up libtool (2.4.6-15) ...
Setting up libxcb-render0:armhf (1.14-3) ...
Setting up libglib2.0-0:armhf (2.70.0-1) ...
No schema files found: doing nothing.
Setting up libwebpdemux2:armhf (0.6.1-2.1) ...
Setting up m4 (1.4.18-5) ...
Setting up libcurl3-gnutls:armhf (7.74.0-1.3) ...
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Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libthai0:armhf (0.1.28-4.1) ...
Setting up ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
129 added, 0 removed; done.
Setting up libpython3.9:armhf (3.9.7-4+rpi1) ...
Setting up libjs-jquery-ui (1.12.1+dfsg-8) ...
Setting up libfreetype6:armhf (2.11.0+dfsg-1) ...
Setting up ucf (3.0043) ...
Setting up libjs-sphinxdoc (4.2.0-4) ...
Setting up autoconf (2.71-2) ...
Setting up dh-strip-nondeterminism (1.12.0-2) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-7) ...
Setting up xml-core (0.18+nmu1) ...
Setting up libcurl4:armhf (7.74.0-1.3) ...
Setting up libx11-6:armhf (2:1.7.2-2) ...
Setting up libharfbuzz0b:armhf (2.7.4-1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up python3.9 (3.9.7-4+rpi1) ...
Setting up automake (1:1.16.4-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libpaper1:armhf (1.1.28) ...

Creating config file /etc/papersize with new version
Setting up libhts3:armhf (1.13+ds-2) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up fontconfig-config (2.13.1-4.2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libpython3.9-dev:armhf (3.9.7-4+rpi1) ...
Setting up python3 (3.9.2-3) ...
Setting up libpaper-utils (1.1.28) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-markupsafe (2.0.1-2) ...
Setting up python3-psutil (5.8.0-2) ...
Setting up python3-tz (2021.3-1) ...
Setting up python3-six (1.16.0-2) ...
Setting up dh-autoreconf (20) ...
Setting up python3-pil:armhf (8.1.2+dfsg-0.3) ...
Setting up python3-roman (2.0.0-5) ...
Setting up python3-pyparsing (2.4.7-1) ...
Setting up python3-certifi (2020.6.20-1) ...
Setting up python3-snowballstemmer (2.1.0-2) ...
Setting up sphinx-common (4.2.0-4) ...
Setting up python3-cycler (0.10.0-3) ...
Setting up python3-kiwisolver (1.3.2-1) ...
Setting up python3-idna (2.10-1) ...
Setting up cython3 (0.29.21-3+b1) ...
Setting up libxt6:armhf (1:1.2.0-1) ...
Setting up python3-toml (0.10.2-1) ...
Setting up python3-urllib3 (1.26.5-1~exp1) ...
Setting up python3.9-dev (3.9.7-4+rpi1) ...
Setting up python3-dateutil (2.8.1-6) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up python3-lib2to3 (3.9.7-1) ...
Setting up python3-imagesize (1.2.0-2) ...
Setting up python3-pkg-resources (58.2.0-1) ...
Setting up python3-distutils (3.9.7-1) ...
Setting up dh-python (5.20211016.1) ...
Setting up python3-more-itertools (4.2.0-3) ...
Setting up python3-iniconfig (1.1.1-1) ...
Setting up python3-attr (20.3.0-1) ...
Setting up fontconfig (2.13.1-4.2) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.2-2) ...
Setting up python3-pysam (0.17.0+ds-2) ...
Setting up libpython3-dev:armhf (3.9.2-3) ...
Setting up python3-setuptools (58.2.0-1) ...
Setting up python3-py (1.10.0-1) ...
Setting up python3-babel (2.8.0+dfsg.1-7) ...
update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
Setting up python3-alabaster (0.7.12-1) ...
Setting up libtk8.6:armhf (8.6.11.1-1) ...
Setting up libpango-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up python3-all (3.9.2-3) ...
Setting up python3-yaml (5.4.1-1) ...
Setting up debhelper (13.5.2) ...
Setting up python3-zipp (1.0.0-3) ...
Setting up python3-nose (1.3.7-7) ...
Setting up libcairo2:armhf (1.16.0-5) ...
Setting up python3-jinja2 (3.0.1-2) ...
Setting up python3-pygments (2.7.1+dfsg-2.1) ...
Setting up python3-packaging (21.0-1) ...
Setting up python3-chardet (4.0.0-1) ...
Setting up libpython3-all-dev:armhf (3.9.2-3) ...
Setting up python3-dev (3.9.2-3) ...
Setting up python3-requests (2.25.1+dfsg-2) ...
Setting up python3-numpy (1:1.19.5-1) ...
Setting up libpangoft2-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up libpangocairo-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up python3-all-dev (3.9.2-3) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ...
Setting up python3-matplotlib (3.3.4-2) ...
Setting up python3-importlib-metadata (4.6.4-1) ...
Setting up blt (2.5.3+dfsg-4.1) ...
Setting up python3-pandas-lib:armhf (1.1.5+dfsg-2) ...
Setting up python3-tk:armhf (3.9.7-1) ...
Setting up python3-pandas (1.1.5+dfsg-2) ...
Setting up r-base-core (4.1.1-2) ...

Creating config file /etc/R/Renviron with new version
Setting up python3-pluggy (0.13.0-6) ...
Setting up python3-pytest (6.2.5-1) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
Processing triggers for sgml-base (1.30) ...
Setting up docutils-common (0.17.1+dfsg-2) ...
Processing triggers for sgml-base (1.30) ...
Setting up python3-docutils (0.17.1+dfsg-2) ...
Setting up python3-sphinx (4.2.0-4) ...
Setting up python3-numpydoc (1.1.0-3) ...
Setting up sbuild-build-depends-python-pybedtools-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-9+rpi1 gcc-10_10.3.0-9+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-9+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.51 bash_5.1-3 bedtools_2.30.0+dfsg-2 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 blt_2.5.3+dfsg-4.1 bsdextrautils_2.37.2-3 bsdutils_1:2.37.2-1 build-essential_12.9 bzip2_1.0.8-4 ca-certificates_20210119 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-9+rpi1 cython3_0.29.21-3+b1 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-python_5.20211016.1 dh-strip-nondeterminism_1.12.0-2 diffutils_1:3.7-5 dirmngr_2.2.27-2 docutils-common_0.17.1+dfsg-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-lyx_2.3.6-1 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-9+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-9+rpi1 gcc-10-base_10.3.0-9+rpi1 gcc-11-base_11.2.0-9+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libasan6_11.2.0-9+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-9+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.5-1 libaudit1_1:3.0.5-1 libbinutils_2.37-5+rpi1 libblas3_3.10.0-1 libblkid1_2.37.2-1 libbrotli1_1.0.9-2+b1 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcairo2_1.16.0-5 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-9+rpi1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libcurl3-gnutls_7.74.0-1.3 libcurl4_7.74.0-1.3 libdatrie1_0.2.13-2 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdeflate0_1.8-1 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libexpat1_2.4.1-2 libexpat1-dev_2.4.1-2 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libffi8_3.4.2-3 libfile-stripnondeterminism-perl_1.12.0-2 libfontconfig1_2.13.1-4.2 libfreetype6_2.11.0+dfsg-1 libfribidi0_1.0.8-2 libgcc-10-dev_10.3.0-9+rpi1 libgcc-s1_11.2.0-9+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libgfortran5_11.2.0-9+rpi1 libglib2.0-0_2.70.0-1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-9+rpi1 libgpg-error0_1.42-3 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.18.3-7 libharfbuzz0b_2.7.4-1 libhogweed6_3.7.3-1 libhts3_1.13+ds-2 libhtscodecs2_1.1.1-3 libice6_2:1.0.10-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libimagequant0_2.12.2-1.1 libisl23_0.23-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.0.6-4 libjs-jquery_3.5.1+dfsg+~3.5.5-7 libjs-jquery-ui_1.12.1+dfsg-8 libjs-sphinxdoc_4.2.0-4 libjs-underscore_1.9.1~dfsg-4 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 liblapack3_3.10.0-1 liblcms2-2_2.12~rc1-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmd0_1.0.4-1 libmount1_2.37.2-1 libmpc3_1.2.0-1 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-2 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpango-1.0-0_1.48.10+ds1-1 libpangocairo-1.0-0_1.48.10+ds1-1 libpangoft2-1.0-0_1.48.10+ds1-1 libpaper-utils_1.1.28 libpaper1_1.1.28 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-5 libpipeline1_1.5.3-1 libpixman-1-0_0.40.0-1 libpng16-16_1.6.37-3 libpsl5_0.21.0-1.2 libpython3-all-dev_3.9.2-3 libpython3-dev_3.9.2-3 libpython3-stdlib_3.9.2-3 libpython3.9_3.9.7-4+rpi1 libpython3.9-dev_3.9.7-4+rpi1 libpython3.9-minimal_3.9.7-4+rpi1 libpython3.9-stdlib_3.9.7-4+rpi1 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsm6_2:1.2.3-1 libsmartcols1_2.37.2-1 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssh2-1_1.10.0-2 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-9+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.9-1+rpi1 libtasn1-6_4.17.0-2 libtcl8.6_8.6.11+dfsg-1 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libthai-data_0.1.28-4.1 libthai0_0.1.28-4.1 libtiff5_4.3.0-2 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtk8.6_8.6.11.1-1 libtool_2.4.6-15 libubsan1_11.2.0-9+rpi1 libuchardet0_0.0.7-1 libudev1_247.9-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-1 libwebp6_0.6.1-2.1 libwebpdemux2_0.6.1-2.1 libwebpmux3_0.6.1-2.1 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libxau6_1:1.0.9-1 libxcb-render0_1.14-3 libxcb-shm0_1.14-3 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.2-2 libxml2_2.9.12+dfsg-5 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.2.0-1 libxxhash0_0.8.0-2+rpi1 libyaml-0-2_0.2.2-1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 mailcap_3.70 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 mime-support_3.66 mount_2.37.2-1 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 openssl_1.1.1l-1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-5 perl-base_5.32.1-5 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python-babel-localedata_2.8.0+dfsg.1-7 python-matplotlib-data_3.3.4-2 python3_3.9.2-3 python3-alabaster_0.7.12-1 python3-all_3.9.2-3 python3-all-dev_3.9.2-3 python3-attr_20.3.0-1 python3-babel_2.8.0+dfsg.1-7 python3-certifi_2020.6.20-1 python3-chardet_4.0.0-1 python3-cycler_0.10.0-3 python3-dateutil_2.8.1-6 python3-dev_3.9.2-3 python3-distutils_3.9.7-1 python3-docutils_0.17.1+dfsg-2 python3-idna_2.10-1 python3-imagesize_1.2.0-2 python3-importlib-metadata_4.6.4-1 python3-iniconfig_1.1.1-1 python3-jinja2_3.0.1-2 python3-kiwisolver_1.3.2-1 python3-lib2to3_3.9.7-1 python3-markupsafe_2.0.1-2 python3-matplotlib_3.3.4-2 python3-minimal_3.9.2-3 python3-more-itertools_4.2.0-3 python3-nose_1.3.7-7 python3-numpy_1:1.19.5-1 python3-numpydoc_1.1.0-3 python3-packaging_21.0-1 python3-pandas_1.1.5+dfsg-2 python3-pandas-lib_1.1.5+dfsg-2 python3-pil_8.1.2+dfsg-0.3 python3-pkg-resources_58.2.0-1 python3-pluggy_0.13.0-6 python3-psutil_5.8.0-2 python3-py_1.10.0-1 python3-pygments_2.7.1+dfsg-2.1 python3-pyparsing_2.4.7-1 python3-pysam_0.17.0+ds-2 python3-pytest_6.2.5-1 python3-requests_2.25.1+dfsg-2 python3-roman_2.0.0-5 python3-setuptools_58.2.0-1 python3-six_1.16.0-2 python3-snowballstemmer_2.1.0-2 python3-sphinx_4.2.0-4 python3-tk_3.9.7-1 python3-toml_0.10.2-1 python3-tz_2021.3-1 python3-urllib3_1.26.5-1~exp1 python3-yaml_5.4.1-1 python3-zipp_1.0.0-3 python3.9_3.9.7-4+rpi1 python3.9-dev_3.9.7-4+rpi1 python3.9-minimal_3.9.7-4+rpi1 r-base-core_4.1.1-2 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-pybedtools-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 sphinx-common_4.2.0-4 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tk8.6-blt2.5_2.5.3+dfsg-4.1 ttf-bitstream-vera_1.10-8.1 tzdata_2021a-1 ucf_3.0043 unzip_6.0-26 util-linux_2.37.2-1 x11-common_1:7.7+23 xdg-utils_1.1.3-4.1 xml-core_0.18+nmu1 xz-utils_5.2.5-2 zip_3.0-12 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.47IfP5Sk/trustedkeys.kbx': General error
gpgv: Signature made Mon Oct 18 12:19:11 2021 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-pybedtools_0.8.2-1.dsc
dpkg-source: info: extracting python-pybedtools in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-pybedtools_0.8.2.orig.tar.gz
dpkg-source: info: unpacking python-pybedtools_0.8.2-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying spelling
dpkg-source: info: applying define_filenotfounderror_python2.patch
dpkg-source: info: applying remove_badges_from_documentation.patch
dpkg-source: info: applying add_missing_shebang.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-cead1762-7766-43eb-bedc-2545e5d63f69
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package python-pybedtools
dpkg-buildpackage: info: source version 0.8.2-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --with python3,sphinxdoc --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/bin/rm -rf fakehome .eggs .pybuild
/bin/rm -rf debian/python3-pybedtools debian/files
/bin/rm -rf pybedtools.egg-info
/bin/rm -rf pybedtools/scripts/__pycache__/
/bin/rm -rf pybedtools/contrib/__pycache__/
/bin/rm -rf pybedtools/__pycache__/
find pybedtools -name "*.so" -o -name "*.o" | xargs -r rm
rm -rf build
/bin/rm -rf pybedtools/cbedtools.cpp pybedtools/featurefuncs.cpp
find docs/source/autodocs/ -name "*.rst" | xargs -r /bin/rm
# dh_auto_clean
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary-arch
dh binary-arch --with python3,sphinxdoc --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py config 
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead
  warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead
  warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead
  warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead
  warnings.warn(
running config
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
python3 setup.py cythonize
running cythonize
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/pybedtools/cbedtools.pxd
  tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/pybedtools/featurefuncs.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
Compiling pybedtools/cbedtools.pyx because it changed.
Compiling pybedtools/featurefuncs.pyx because it changed.
[1/2] Cythonizing pybedtools/cbedtools.pyx
[2/2] Cythonizing pybedtools/featurefuncs.pyx
dh_auto_build
I: pybuild base:232: /usr/bin/python3 setup.py build 
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead
  warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead
  warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead
  warnings.warn(
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead
  warnings.warn(
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools
copying pybedtools/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools
copying pybedtools/bedtool.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools
copying pybedtools/filenames.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools
copying pybedtools/genome_registry.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools
copying pybedtools/helpers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools
copying pybedtools/logger.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools
copying pybedtools/parallel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools
copying pybedtools/paths.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools
copying pybedtools/settings.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools
copying pybedtools/stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools
copying pybedtools/version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test
copying pybedtools/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test
copying pybedtools/test/genomepy_integration.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test
copying pybedtools/test/regression_tests.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test
copying pybedtools/test/test_1.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test
copying pybedtools/test/test_cbedtools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test
copying pybedtools/test/test_contrib.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test
copying pybedtools/test/test_gzip_support.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test
copying pybedtools/test/test_helpers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test
copying pybedtools/test/test_issues.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test
copying pybedtools/test/test_iter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test
copying pybedtools/test/test_len_leak.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test
copying pybedtools/test/test_pathlib.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test
copying pybedtools/test/tfuncs.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/bigbed.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/intersection_matrix.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/long_range_interaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/plotting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/venn_maker.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/bigwig.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
running egg_info
creating pybedtools.egg-info
writing pybedtools.egg-info/PKG-INFO
writing dependency_links to pybedtools.egg-info/dependency_links.txt
writing requirements to pybedtools.egg-info/requires.txt
writing top-level names to pybedtools.egg-info/top_level.txt
writing manifest file 'pybedtools.egg-info/SOURCES.txt'
reading manifest file 'pybedtools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.c' under directory 'pybedtools'
warning: no previously-included files matching '__pycache__' found under directory '*'
warning: no previously-included files matching '*.py[co]' found under directory '*'
adding license file 'LICENSE.txt'
writing manifest file 'pybedtools.egg-info/SOURCES.txt'
copying pybedtools/cbedtools.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools
copying pybedtools/featurefuncs.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include
copying pybedtools/include/bedFile.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include
copying pybedtools/include/bedFile.h -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include
copying pybedtools/include/fileType.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include
copying pybedtools/include/fileType.h -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include
copying pybedtools/include/gzstream.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include
copying pybedtools/include/gzstream.h -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include
copying pybedtools/include/lineFileUtilities.h -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include
copying pybedtools/test/data/1000genomes-example.vcf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/164.gtf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/a.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/a.igv_script -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/a.links.html -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/b.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/bedpe.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/bedpe2.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/c.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/d.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/democonfig.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/exons.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/expand_test.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.1.100.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.1.100.bam.bai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.50.200.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.50.200.bam.bai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.cram -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.gff.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.othersort.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.sorted.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.sorted.bam.bai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/genome.fa -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/hg19.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/hg38-base.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/hg38-problem.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/issue319.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/issue319.out.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/issue319.vcf.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/issue_121.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/m1.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/mm9.bed12 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/multibamcov_test.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/reads.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/small.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/small.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/snps.bed.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/tag_test1.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/tag_test2.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test.fa -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test.fa.fai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test_bedpe.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test_peaks.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test_tsses.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/v.vcf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/vcf-stderr-test.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/vcf-stderr-test.vcf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/venn.b.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/venn.c.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/x.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/x.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/y.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data
copying pybedtools/_Window.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools
copying pybedtools/cbedtools.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools
copying pybedtools/featurefuncs.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools
copying pybedtools/cbedtools.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools
copying pybedtools/test/gchart-expected.png -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test
copying pybedtools/test/mpl-expected.png -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test
copying pybedtools/test/prevent_open_file_regression -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test
copying pybedtools/test/test_cases.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test
copying pybedtools/test/test_merge215.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test
copying pybedtools/test/test_merge227.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test
copying pybedtools/test/test_shuffle215.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test
copying pybedtools/test/test_shuffle227.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test
running build_ext
building 'pybedtools.cbedtools' extension
creating build
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/pybedtools
creating build/temp.linux-armhf-3.9/pybedtools/include
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/cbedtools.cpp -o build/temp.linux-armhf-3.9/pybedtools/cbedtools.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armhf-3.9/pybedtools/include/bedFile.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/fileType.cpp -o build/temp.linux-armhf-3.9/pybedtools/include/fileType.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armhf-3.9/pybedtools/include/gzstream.o
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/pybedtools/cbedtools.o build/temp.linux-armhf-3.9/pybedtools/include/bedFile.o build/temp.linux-armhf-3.9/pybedtools/include/fileType.o build/temp.linux-armhf-3.9/pybedtools/include/gzstream.o -lstdc++ -lz -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/cbedtools.cpython-39-arm-linux-gnueabihf.so
building 'pybedtools.featurefuncs' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/featurefuncs.cpp -o build/temp.linux-armhf-3.9/pybedtools/featurefuncs.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armhf-3.9/pybedtools/include/bedFile.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/fileType.cpp -o build/temp.linux-armhf-3.9/pybedtools/include/fileType.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armhf-3.9/pybedtools/include/gzstream.o
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/pybedtools/featurefuncs.o build/temp.linux-armhf-3.9/pybedtools/include/bedFile.o build/temp.linux-armhf-3.9/pybedtools/include/fileType.o build/temp.linux-armhf-3.9/pybedtools/include/gzstream.o -lstdc++ -lz -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/featurefuncs.cpython-39-arm-linux-gnueabihf.so
python3 setup.py develop --user
running develop
running egg_info
writing pybedtools.egg-info/PKG-INFO
writing dependency_links to pybedtools.egg-info/dependency_links.txt
writing requirements to pybedtools.egg-info/requires.txt
writing top-level names to pybedtools.egg-info/top_level.txt
reading manifest file 'pybedtools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.c' under directory 'pybedtools'
warning: no previously-included files matching '__pycache__' found under directory '*'
warning: no previously-included files matching '*.py[co]' found under directory '*'
adding license file 'LICENSE.txt'
writing manifest file 'pybedtools.egg-info/SOURCES.txt'
running build_ext
building 'pybedtools.cbedtools' extension
creating build/temp.linux-armv8l-3.9
creating build/temp.linux-armv8l-3.9/pybedtools
creating build/temp.linux-armv8l-3.9/pybedtools/include
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/cbedtools.cpp -o build/temp.linux-armv8l-3.9/pybedtools/cbedtools.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv8l-3.9/pybedtools/include/bedFile.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/fileType.cpp -o build/temp.linux-armv8l-3.9/pybedtools/include/fileType.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv8l-3.9/pybedtools/include/gzstream.o
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv8l-3.9/pybedtools/cbedtools.o build/temp.linux-armv8l-3.9/pybedtools/include/bedFile.o build/temp.linux-armv8l-3.9/pybedtools/include/fileType.o build/temp.linux-armv8l-3.9/pybedtools/include/gzstream.o -lstdc++ -lz -o /<<PKGBUILDDIR>>/pybedtools/cbedtools.cpython-39-arm-linux-gnueabihf.so
building 'pybedtools.featurefuncs' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/featurefuncs.cpp -o build/temp.linux-armv8l-3.9/pybedtools/featurefuncs.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv8l-3.9/pybedtools/include/bedFile.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/fileType.cpp -o build/temp.linux-armv8l-3.9/pybedtools/include/fileType.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv8l-3.9/pybedtools/include/gzstream.o
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv8l-3.9/pybedtools/featurefuncs.o build/temp.linux-armv8l-3.9/pybedtools/include/bedFile.o build/temp.linux-armv8l-3.9/pybedtools/include/fileType.o build/temp.linux-armv8l-3.9/pybedtools/include/gzstream.o -lstdc++ -lz -o /<<PKGBUILDDIR>>/pybedtools/featurefuncs.cpython-39-arm-linux-gnueabihf.so
Creating /<<PKGBUILDDIR>>/fakehome/.local/lib/python3.9/site-packages/pybedtools.egg-link (link to .)
Adding pybedtools 0.8.2 to easy-install.pth file

Installed /<<PKGBUILDDIR>>
Processing dependencies for pybedtools==0.8.2
Searching for six==1.16.0
Best match: six 1.16.0
Adding six 1.16.0 to easy-install.pth file

Using /usr/lib/python3/dist-packages
Searching for pysam==0.17.0
Best match: pysam 0.17.0
Adding pysam 0.17.0 to easy-install.pth file

Using /usr/lib/python3/dist-packages
Finished processing dependencies for pybedtools==0.8.2
python3 setup.py build_sphinx
running build_sphinx
Running Sphinx v4.2.0
making output directory... done
[autosummary] generating autosummary for: 3-brief-examples.rst, FAQs.rst, autodoc_source.rst, changes.rst, create-a-bedtool-tutorial.rst, default-arguments.rst, each.rst, filtering.rst, flow-of-commands.rst, history.rst, ..., topical-create-a-bedtool.rst, topical-design-principles.rst, topical-documentation-contents.rst, topical-genome.rst, topical-iterators.rst, topical-low-level-ops.rst, topical-random.rst, topical-saving.rst, topical-wrapping.rst, tutorial-contents.rst
[autosummary] generating autosummary for: /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.absolute_distance.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.all_hits.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.annotate.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.any_hits.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.as_intervalfile.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.at.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_bed.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_fastq.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.bed6.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.bedpe_to_bam.rst, ..., /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.helpers.set_tempdir.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.parallel.parallel_apply.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.add_color.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.bedgraph_scale.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.extend_fields.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.five_prime.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.greater_than.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.less_than.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.normalized_to_length.rst, /<<PKGBUILDDIR>>/docs/source/pybedtools.featurefuncs.three_prime.rst
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  warn(msg)
/usr/lib/python3/dist-packages/numpydoc/docscrape.py:418: UserWarning: Unknown section Example in the docstring of <function tag_bedpe at 0xf6650c88> in /<<PKGBUILDDIR>>/pybedtools/contrib/long_range_interaction.py.
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/<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.contrib.plotting.Track.rst:156: WARNING: autosummary: failed to import Track.colorbar
/<<PKGBUILDDIR>>/docs/source/topical-genome.rst:55: WARNING: Unknown target name: "genomepy<https://github.com/vanheeringen-lab/genomepy/>".
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/<<PKGBUILDDIR>>/pybedtools/bedtool.py:docstring of pybedtools.bedtool.BedTool._log_to_history.<locals>.decorated:9: WARNING: Could not lex literal_block as "python". Highlighting skipped.
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writing additional pages... search done
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copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 9 warnings.

The HTML pages are in build/sphinx/html.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test -a -O--buildsystem=pybuild
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I: pybuild base:232: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-pybedtools 
/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead
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/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead
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/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead
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/usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead
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running install
running build
running build_py
copying pybedtools/version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools
running egg_info
writing pybedtools.egg-info/PKG-INFO
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reading manifest file 'pybedtools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
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adding license file 'LICENSE.txt'
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running build_ext
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creating /<<PKGBUILDDIR>>/debian/python3-pybedtools
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creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/bedtool.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/filenames.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/genome_registry.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/helpers.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/logger.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/parallel.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/paths.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/settings.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/stats.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test
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copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/genomepy_integration.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/regression_tests.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_1.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_cbedtools.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_contrib.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_gzip_support.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_helpers.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_issues.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_iter.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_len_leak.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_pathlib.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/tfuncs.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/1000genomes-example.vcf -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/164.gtf -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/a.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/a.igv_script -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/a.links.html -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/b.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/bedpe.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/bedpe2.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/c.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/d.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/democonfig.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
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copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/exons.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/expand_test.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.1.100.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.1.100.bam.bai -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.50.200.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.50.200.bam.bai -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.cram -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.gff.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.othersort.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.sorted.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.sorted.bam.bai -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/genome.fa -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/hg19.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/hg38-base.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/hg38-problem.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/issue319.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/issue319.out.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/issue319.vcf.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/issue_121.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/m1.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/mm9.bed12 -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/multibamcov_test.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/reads.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/small.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/small.fastq -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/snps.bed.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/tag_test1.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/tag_test2.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/test.fa -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/test.fa.fai -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/test_bedpe.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/test_peaks.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/test_tsses.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/v.vcf -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/vcf-stderr-test.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/vcf-stderr-test.vcf -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/venn.b.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/venn.c.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/x.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/x.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/y.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/gchart-expected.png -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/mpl-expected.png -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/prevent_open_file_regression -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_cases.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_merge215.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_merge227.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_shuffle215.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_shuffle227.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib/bigbed.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib/intersection_matrix.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib/long_range_interaction.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib/plotting.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib/venn_maker.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib/bigwig.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/cbedtools.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/featurefuncs.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include/bedFile.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include/bedFile.h -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include/fileType.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include/fileType.h -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include/gzstream.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include/gzstream.h -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include/lineFileUtilities.h -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/_Window.pyx -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/cbedtools.pyx -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/featurefuncs.pyx -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/cbedtools.pxd -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/cbedtools.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/featurefuncs.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/version.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/bedtool.py to bedtool.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/filenames.py to filenames.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/genome_registry.py to genome_registry.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/helpers.py to helpers.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/logger.py to logger.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/parallel.py to parallel.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/paths.py to paths.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/settings.py to settings.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/stats.py to stats.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/genomepy_integration.py to genomepy_integration.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/regression_tests.py to regression_tests.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_1.py to test_1.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_cbedtools.py to test_cbedtools.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_contrib.py to test_contrib.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_gzip_support.py to test_gzip_support.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_helpers.py to test_helpers.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_issues.py to test_issues.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_iter.py to test_iter.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_len_leak.py to test_len_leak.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_pathlib.py to test_pathlib.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/tfuncs.py to tfuncs.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib/bigbed.py to bigbed.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib/intersection_matrix.py to intersection_matrix.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib/long_range_interaction.py to long_range_interaction.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib/plotting.py to plotting.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib/venn_maker.py to venn_maker.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib/bigwig.py to bigwig.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/version.py to version.cpython-39.pyc
running install_egg_info
Copying pybedtools.egg-info to /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools-0.8.2.egg-info
Skipping SOURCES.txt
running install_scripts
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
rm -f debian/python3-pybedtools/usr/lib/python3*/dist-packages/pybedtools/test/prevent_open_file_regression
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a -O--buildsystem=pybuild
   dh_sphinxdoc -a -O--buildsystem=pybuild
dh_sphinxdoc: warning: Sphinx documentation not found
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_installexamples -a -O--buildsystem=pybuild
   dh_python3 -a -O--buildsystem=pybuild
   dh_installsystemduser -a -O--buildsystem=pybuild
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_strip_nondeterminism -a -O--buildsystem=pybuild
   dh_compress -a -O--buildsystem=pybuild
   dh_fixperms -a -O--buildsystem=pybuild
   dh_missing -a -O--buildsystem=pybuild
   dh_dwz -a -O--buildsystem=pybuild
   dh_strip -a -O--buildsystem=pybuild
   dh_makeshlibs -a -O--buildsystem=pybuild
   dh_shlibdeps -a -O--buildsystem=pybuild
   dh_installdeb -a -O--buildsystem=pybuild
   dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Versions} unused, but is defined
   dh_md5sums -a -O--buildsystem=pybuild
   dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pybedtools' in '../python3-pybedtools_0.8.2-1_armhf.deb'.
dpkg-deb: building package 'python3-pybedtools-dbgsym' in '../python3-pybedtools-dbgsym_0.8.2-1_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../python-pybedtools_0.8.2-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-10-23T07:13:46Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


python-pybedtools_0.8.2-1_armhf.changes:
----------------------------------------

Format: 1.8
Date: Mon, 18 Oct 2021 14:08:37 +0200
Source: python-pybedtools
Binary: python3-pybedtools python3-pybedtools-dbgsym
Architecture: armhf
Version: 0.8.2-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 python3-pybedtools - Python 3 wrapper around BEDTools for bioinformatics work
Changes:
 python-pybedtools (0.8.2-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.6.0 (routine-update)
   * debhelper-compat 13 (routine-update)
   * watch file standard 4 (routine-update)
   * Fix installation of examples
   * No need to fix permissions any more
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Files:
 29d199016440f75e1fe7a6d16b0fccce 9880 python optional python-pybedtools_0.8.2-1_armhf.buildinfo
 c314b5f28af1e4b46df021e62fc5074a 1117448 debug optional python3-pybedtools-dbgsym_0.8.2-1_armhf.deb
 bb0d4f83f3666aff2f1bc18d9113258d 12139976 python optional python3-pybedtools_0.8.2-1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


python3-pybedtools-dbgsym_0.8.2-1_armhf.deb
-------------------------------------------

 new Debian package, version 2.0.
 size 1117448 bytes: control archive=652 bytes.
     455 bytes,    12 lines      control              
     310 bytes,     3 lines      md5sums              
 Package: python3-pybedtools-dbgsym
 Source: python-pybedtools
 Version: 0.8.2-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1201
 Depends: python3-pybedtools (= 0.8.2-1)
 Section: debug
 Priority: optional
 Description: debug symbols for python3-pybedtools
 Build-Ids: 45003f0968bd0c55aebda49b6c15ba2539261705 fcbc61ea7f7a02a47acaf5ecd1cd740fd92aa098

drwxr-xr-x root/root         0 2021-10-18 12:08 ./
drwxr-xr-x root/root         0 2021-10-18 12:08 ./usr/
drwxr-xr-x root/root         0 2021-10-18 12:08 ./usr/lib/
drwxr-xr-x root/root         0 2021-10-18 12:08 ./usr/lib/debug/
drwxr-xr-x root/root         0 2021-10-18 12:08 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2021-10-18 12:08 ./usr/lib/debug/.build-id/45/
-rw-r--r-- root/root    371144 2021-10-18 12:08 ./usr/lib/debug/.build-id/45/003f0968bd0c55aebda49b6c15ba2539261705.debug
drwxr-xr-x root/root         0 2021-10-18 12:08 ./usr/lib/debug/.build-id/fc/
-rw-r--r-- root/root    755688 2021-10-18 12:08 ./usr/lib/debug/.build-id/fc/bc61ea7f7a02a47acaf5ecd1cd740fd92aa098.debug
drwxr-xr-x root/root         0 2021-10-18 12:08 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2021-10-18 12:08 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root     88888 2021-10-18 12:08 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-pybedtools.debug
drwxr-xr-x root/root         0 2021-10-18 12:08 ./usr/share/
drwxr-xr-x root/root         0 2021-10-18 12:08 ./usr/share/doc/
lrwxrwxrwx root/root         0 2021-10-18 12:08 ./usr/share/doc/python3-pybedtools-dbgsym -> python3-pybedtools


python3-pybedtools_0.8.2-1_armhf.deb
------------------------------------

 new Debian package, version 2.0.
 size 12139976 bytes: control archive=4456 bytes.
     785 bytes,    17 lines      control              
   12492 bytes,   128 lines      md5sums              
     273 bytes,    12 lines   *  postinst             #!/bin/sh
     422 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: python3-pybedtools
 Source: python-pybedtools
 Version: 0.8.2-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 17048
 Depends: python3 (<< 3.10), python3 (>= 3.9~), python3-pysam, python3-six, python3:any, libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
 Suggests: python-pybedtools-doc
 Section: python
 Priority: optional
 Homepage: https://daler.github.io/pybedtools/
 Description: Python 3 wrapper around BEDTools for bioinformatics work
  The BEDTools suite of programs is widely used for genomic interval
  manipulation or “genome algebra”. pybedtools wraps and extends BEDTools and
  offers feature-level manipulations from within Python.
  .
  This is the Python 3 version.

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-rw-r--r-- root/root     26417 2021-03-14 20:13 ./usr/lib/python3/dist-packages/pybedtools/helpers.py
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| Post Build                                                                   |
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| Cleanup                                                                      |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

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| Summary                                                                      |
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Build Architecture: armhf
Build-Space: 94776
Build-Time: 236
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 926
Job: python-pybedtools_0.8.2-1
Machine Architecture: armhf
Package: python-pybedtools
Package-Time: 1184
Source-Version: 0.8.2-1
Space: 94776
Status: successful
Version: 0.8.2-1
--------------------------------------------------------------------------------
Finished at 2021-10-23T07:13:46Z
Build needed 00:19:44, 94776k disk space

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