Raspbian Package Auto-Building

python-pybedtools → 0.8.0-1 → armhf → 2019-01-30 17:18:40

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard

+==============================================================================+
| python-pybedtools 0.8.0-1 (armhf)            Wed, 30 Jan 2019 16:43:59 +0000 |
+==============================================================================+

Package: python-pybedtools
Version: 0.8.0-1
Source Version: 0.8.0-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-98617058-5a6d-4de0-9b8f-d073be8e53ee' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.3 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [13.0 MB]
Fetched 24.3 MB in 31s (780 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'python-pybedtools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-pybedtools.git
Please use:
git clone https://salsa.debian.org/med-team/python-pybedtools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 12.5 MB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main python-pybedtools 0.8.0-1 (dsc) [2463 B]
Get:2 http://172.17.0.1/private buster-staging/main python-pybedtools 0.8.0-1 (tar) [12.4 MB]
Get:3 http://172.17.0.1/private buster-staging/main python-pybedtools 0.8.0-1 (diff) [30.3 kB]
Fetched 12.5 MB in 4s (3049 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-pybedtools-BD3MD6/python-pybedtools-0.8.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-pybedtools-BD3MD6' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-zdfZya/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-zdfZya/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-zdfZya/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-zdfZya/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-zdfZya/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-zdfZya/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-zdfZya/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-zdfZya/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2831 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
  libgpg-error-l10n libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3
  libkrb5support0 libnss-systemd libpam-systemd libssl1.1 openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-zdfZya/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (29.4 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15817 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 10), dh-python, bedtools, cython3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-nose, python3-numpy, python3-numpydoc, python3-pandas, python3-yaml, python3-tk, python3-sphinx, r-base-core, zlib1g-dev
Filtered Build-Depends: debhelper (>= 10), dh-python, bedtools, cython3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-nose, python3-numpy, python3-numpydoc, python3-pandas, python3-yaml, python3-tk, python3-sphinx, r-base-core, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-python-pybedtools-dummy' in '/<<BUILDDIR>>/resolver-zdfZya/apt_archive/sbuild-build-depends-python-pybedtools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-python-pybedtools-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-zdfZya/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-zdfZya/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-zdfZya/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-zdfZya/apt_archive ./ Sources [591 B]
Get:5 copy:/<<BUILDDIR>>/resolver-zdfZya/apt_archive ./ Packages [672 B]
Fetched 2596 B in 1s (3641 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install python-pybedtools build dependencies (apt-based resolver)
-----------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  dbus dbus-user-session e2fsprogs-l10n krb5-locales libgpg-error-l10n
  libnss-systemd libpam-systemd systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bedtools blt bsdmainutils cython3
  debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common
  dwz file fontconfig fontconfig-config fonts-lyx gettext gettext-base
  groff-base intltool-debian libarchive-zip-perl libblas3 libbsd0 libcairo2
  libcroco3 libcurl3-gnutls libcurl4 libdatrie1 libelf1 libexpat1-dev
  libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
  libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhts2 libice6
  libicu63 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui
  libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc libmagic1 libmpdec2
  libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
  libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpsl5
  libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7
  libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib librtmp1
  libsigsegv2 libsm6 libssh2-1 libtcl8.6 libthai-data libthai0 libtiff5
  libtk8.6 libtool libuchardet0 libwebp6 libx11-6 libx11-data libxau6
  libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
  libxrender1 libxss1 libxt6 libyaml-0-2 m4 man-db mime-support po-debconf
  python-babel-localedata python-matplotlib-data python3 python3-alabaster
  python3-all python3-all-dev python3-babel python3-certifi python3-chardet
  python3-cycler python3-dateutil python3-dev python3-distutils
  python3-docutils python3-idna python3-imagesize python3-jinja2
  python3-kiwisolver python3-lib2to3 python3-markupsafe python3-matplotlib
  python3-minimal python3-nose python3-numpy python3-numpydoc
  python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources
  python3-pygments python3-pyparsing python3-pysam python3-requests
  python3-roman python3-setuptools python3-six python3-sphinx python3-tk
  python3-tz python3-urllib3 python3-yaml python3.7 python3.7-dev
  python3.7-minimal r-base-core sgml-base sphinx-common tk8.6-blt2.5
  ttf-bitstream-vera ucf unzip x11-common xdg-utils xml-core zip zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc blt-demo wamerican | wordlist
  whois vacation cython-doc dh-make gettext-doc libasprintf-dev
  libgettextpo-dev groff libjs-jquery-ui-docs tcl8.6 tk8.6 libtool-doc
  gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
  libmail-box-perl python3-doc python3-venv python-cycler-doc docutils-doc
  fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french
  texlive-latex-base texlive-latex-recommended python-jinja2-doc dvipng ffmpeg
  gir1.2-gtk-3.0 ghostscript inkscape ipython3 librsvg2-common
  python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo
  python3-gobject python3-pyqt4 python3-scipy python3-sip python3-tornado
  texlive-extra-utils texlive-latex-extra ttf-staypuft python-nose-doc
  gfortran python-numpy-doc python3-pytest python3-numpy-dbg python-pandas-doc
  python-pygments-doc python-pyparsing-doc python3-cryptography
  python3-openssl python3-socks python-setuptools-doc imagemagick-6.q16
  latexmk libjs-mathjax python3-sphinx-rtd-theme python3-stemmer sphinx-doc
  texlive-fonts-recommended texlive-generic-extra tix python3-tk-dbg
  python3.7-venv python3.7-doc binfmt-support ess r-doc-info | r-doc-pdf
  r-mathlib r-base-html sgml-base-doc
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs javascript-common publicsuffix libltdl-dev
  libmail-sendmail-perl python3-pil python3-scipy python3-numexpr
  python3-tables python3-bs4 python3-html5lib python3-lxml r-recommended
  r-base-dev r-doc-html libfile-mimeinfo-perl libnet-dbus-perl
  libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bedtools blt bsdmainutils cython3
  debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common
  dwz file fontconfig fontconfig-config fonts-lyx gettext gettext-base
  groff-base intltool-debian libarchive-zip-perl libblas3 libbsd0 libcairo2
  libcroco3 libcurl3-gnutls libcurl4 libdatrie1 libelf1 libexpat1-dev
  libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
  libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhts2 libice6
  libicu63 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui
  libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc libmagic1 libmpdec2
  libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
  libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpsl5
  libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7
  libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib librtmp1
  libsigsegv2 libsm6 libssh2-1 libtcl8.6 libthai-data libthai0 libtiff5
  libtk8.6 libtool libuchardet0 libwebp6 libx11-6 libx11-data libxau6
  libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
  libxrender1 libxss1 libxt6 libyaml-0-2 m4 man-db mime-support po-debconf
  python-babel-localedata python-matplotlib-data python3 python3-alabaster
  python3-all python3-all-dev python3-babel python3-certifi python3-chardet
  python3-cycler python3-dateutil python3-dev python3-distutils
  python3-docutils python3-idna python3-imagesize python3-jinja2
  python3-kiwisolver python3-lib2to3 python3-markupsafe python3-matplotlib
  python3-minimal python3-nose python3-numpy python3-numpydoc
  python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources
  python3-pygments python3-pyparsing python3-pysam python3-requests
  python3-roman python3-setuptools python3-six python3-sphinx python3-tk
  python3-tz python3-urllib3 python3-yaml python3.7 python3.7-dev
  python3.7-minimal r-base-core sbuild-build-depends-python-pybedtools-dummy
  sgml-base sphinx-common tk8.6-blt2.5 ttf-bitstream-vera ucf unzip x11-common
  xdg-utils xml-core zip zlib1g-dev
0 upgraded, 156 newly installed, 0 to remove and 0 not upgraded.
Need to get 136 MB/138 MB of archives.
After this operation, 372 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-zdfZya/apt_archive ./ sbuild-build-depends-python-pybedtools-dummy 0.invalid.0 [960 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.4-2 [782 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.1-1 [26.6 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.5-1 [1231 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libpython3.7-minimal armhf 3.7.2-1 [582 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python3.7-minimal armhf 3.7.2-1 [1454 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.7.2-1 [36.6 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libpython3.7-stdlib armhf 3.7.2-1 [1663 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf python3.7 armhf 3.7.2-1 [323 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.7.2-1 [20.0 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.7.2-1 [61.5 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf sgml-base all 1.29 [14.8 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.35-2 [242 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.35-2 [109 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.35-2 [65.1 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf ucf all 3.0038+nmu1 [69.0 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf bedtools armhf 2.26.0+dfsg-5 [476 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.9+dfsg-1 [878 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libfreetype6 armhf 2.9.1-3 [318 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf ttf-bitstream-vera all 1.10-8 [352 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.13.1-2 [132 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.7-1 [298 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.7-1 [689 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libtk8.6 armhf 8.6.9-1 [666 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4 [468 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf blt armhf 2.5.3+dfsg-4 [14.8 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf cython3 armhf 0.29.2-2 [1299 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-8 [547 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 1.1.0-1 [19.5 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 1.1.0-1 [12.6 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.175-2 [157 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-3 [66.0 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.2-3 [1076 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libicu63 armhf 63.1-6 [7973 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b1 [570 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-3 [132 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf debhelper all 12 [1002 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.7.2-3 [76.7 kB]
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Get:61 http://172.17.0.1/private buster-staging/main armhf dh-python all 3.20180927 [95.8 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf xml-core all 0.18 [23.4 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf docutils-common all 0.14+dfsg-3 [204 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf fonts-lyx all 2.3.2-1 [199 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.2.0-14+rpi1 [206 kB]
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Get:68 http://172.17.0.1/private buster-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.13.1-2 [99.3 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.16.0-2 [602 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.36.0-1 [73.6 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-2 [125 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libcurl3-gnutls armhf 7.63.0-1 [288 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libcurl4 armhf 7.63.0-1 [290 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.12-1 [35.8 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.6-1 [127 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libfribidi0 armhf 1.0.5-3.1 [62.1 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.13-7 [69.6 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 2.3.0-1 [1130 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libhts2 armhf 1.9-8 [254 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libjs-underscore all 1.8.3~dfsg-2 [91.4 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libjs-sphinxdoc all 1.7.9-1 [92.3 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-2 [1493 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.28-1 [170 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.28-1 [50.9 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.42.4-6 [168 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-6 [61.9 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-6 [51.6 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.26 [20.0 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.26 [17.5 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libpython3.7 armhf 3.7.2-1 [1253 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libpython3.7-dev armhf 3.7.2-1 [47.2 MB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libpython3-dev armhf 3.7.2-1 [20.1 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libpython3-all-dev armhf 3.7.2-1 [1064 B]
Get:99 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.10-3 [235 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libyaml-0-2 armhf 0.2.1-1 [38.8 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf python-babel-localedata all 2.6.0+dfsg.1-1 [4083 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf python-matplotlib-data all 3.0.2-2 [4138 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf python3-all armhf 3.7.2-1 [1060 B]
Get:104 http://172.17.0.1/private buster-staging/main armhf python3.7-dev armhf 3.7.2-1 [510 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf python3-dev armhf 3.7.2-1 [1260 B]
Get:106 http://172.17.0.1/private buster-staging/main armhf python3-all-dev armhf 3.7.2-1 [1060 B]
Get:107 http://172.17.0.1/private buster-staging/main armhf python3-pkg-resources all 40.6.3-1 [152 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf python3-tz all 2018.9-1 [27.0 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf python3-babel all 2.6.0+dfsg.1-1 [96.7 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf python3-certifi all 2018.8.24-1 [140 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf python3-chardet all 3.0.4-3 [80.5 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf python3-six all 1.12.0-1 [15.7 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf python3-cycler all 0.10.0-1 [7556 B]
Get:114 http://172.17.0.1/private buster-staging/main armhf python3-dateutil all 2.6.1-1 [52.8 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf python3-roman all 2.0.0-3 [8768 B]
Get:116 http://172.17.0.1/private buster-staging/main armhf python3-docutils all 0.14+dfsg-3 [377 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf python3-idna all 2.6-1 [34.3 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf python3-imagesize all 1.0.0-1 [4960 B]
Get:119 http://172.17.0.1/private buster-staging/main armhf python3-markupsafe armhf 1.1.0-1 [14.4 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf python3-jinja2 all 2.10-1 [106 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf python3-kiwisolver armhf 1.0.1-2+b1 [53.3 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf python3-numpy armhf 1:1.16.0-1 [1864 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf python3-matplotlib armhf 3.0.2-2 [5282 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf python3-nose all 1.3.7-4 [132 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf sphinx-common all 1.7.9-1 [437 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf python3-alabaster all 0.7.8-1 [18.4 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf python3-packaging all 19.0-1 [20.5 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf python3-pygments all 2.3.1+dfsg-1 [594 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf python3-urllib3 all 1.24-1 [96.8 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf python3-requests all 2.20.0-2 [66.7 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf python3-sphinx all 1.7.9-1 [449 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf python3-numpydoc all 0.7.0-1 [18.3 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf python3-pandas-lib armhf 0.23.3-1+b1 [4582 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf python3-pandas all 0.23.3-1 [1743 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf python3-pysam armhf 0.15.1+ds-1+rpi1 [1440 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf python3-setuptools all 40.6.3-1 [303 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf python3-tk armhf 3.7.2-3 [94.2 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf python3-yaml armhf 3.13-2 [111 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf unzip armhf 6.0-21 [149 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:143 http://172.17.0.1/private buster-staging/main armhf r-base-core armhf 3.5.2-1 [23.6 MB]
Get:144 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up python3-six (1.12.0-1) ...
Setting up libx11-6:armhf (2:1.6.7-1) ...
Setting up python3-pyparsing (2.2.0+dfsg1-2) ...
Setting up python3-cycler (0.10.0-1) ...
Setting up python3-certifi (2018.8.24-1) ...
Setting up python3-pkg-resources (40.6.3-1) ...
Setting up python3.7-dev (3.7.2-1) ...
Setting up python3-markupsafe (1.1.0-1) ...
Setting up python3-pysam (0.15.1+ds-1+rpi1) ...
Setting up libpython3-all-dev:armhf (3.7.2-1) ...
Setting up python3-nose (1.3.7-4) ...
Setting up python3-chardet (3.0.4-3) ...
Setting up python3-jinja2 (2.10-1) ...
Setting up libxcb-shm0:armhf (1.13.1-2) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up cython3 (0.29.2-2) ...
Setting up python3-urllib3 (1.24-1) ...
Setting up python3-packaging (19.0-1) ...
Setting up libxft2:armhf (2.3.2-2) ...
Setting up python3-lib2to3 (3.7.2-3) ...
Setting up python3-tz (2018.9-1) ...
Setting up python3-distutils (3.7.2-3) ...
Setting up fontconfig (2.13.1-2) ...
Regenerating fonts cache... done.
Setting up python3-dateutil (2.6.1-1) ...
Setting up python3-pygments (2.3.1+dfsg-1) ...
Setting up python3-yaml (3.13-2) ...
Setting up python3-roman (2.0.0-3) ...
Setting up python3-kiwisolver (1.0.1-2+b1) ...
Setting up python3-imagesize (1.0.0-1) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up python3-numpy (1:1.16.0-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up python3-pandas-lib (0.23.3-1+b1) ...
Setting up python3-babel (2.6.0+dfsg.1-1) ...
update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
Setting up libpango-1.0-0:armhf (1.42.4-6) ...
Setting up python3-requests (2.20.0-2) ...
Setting up python3-pandas (0.23.3-1) ...
Setting up python3-setuptools (40.6.3-1) ...
Setting up python3-matplotlib (3.0.2-2) ...
Setting up dh-python (3.20180927) ...
Setting up libcairo2:armhf (1.16.0-2) ...
Setting up libtk8.6:armhf (8.6.9-1) ...
Setting up python3-dev (3.7.2-1) ...
Setting up libpangoft2-1.0-0:armhf (1.42.4-6) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-4) ...
Setting up python3-all (3.7.2-1) ...
Setting up blt (2.5.3+dfsg-4) ...
Setting up python3-all-dev (3.7.2-1) ...
Setting up libpangocairo-1.0-0:armhf (1.42.4-6) ...
Setting up python3-tk:armhf (3.7.2-3) ...
Setting up r-base-core (3.5.2-1) ...

Creating config file /etc/R/Renviron with new version
Processing triggers for sgml-base (1.29) ...
Setting up docutils-common (0.14+dfsg-3) ...
Processing triggers for sgml-base (1.29) ...
Setting up python3-docutils (0.14+dfsg-3) ...
update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python3-sphinx (1.7.9-1) ...
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode
Setting up python3-numpydoc (0.7.0-1) ...
Setting up debhelper (12) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (1.1.0-1) ...
Setting up sbuild-build-depends-python-pybedtools-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.28-5+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.8.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.31.1-11+rpi1 dpkg-dev_1.19.2 g++-8_8.2.0-14+rpi1 gcc-8_8.2.0-14+rpi1 libc6-dev_2.28-5+rpi1 libstdc++-8-dev_8.2.0-14+rpi1 libstdc++6_8.2.0-14+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.0~beta1 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_5.0-2 bedtools_2.26.0+dfsg-5 binutils_2.31.1-11+rpi1 binutils-arm-linux-gnueabihf_2.31.1-11+rpi1 binutils-common_2.31.1-11+rpi1 blt_2.5.3+dfsg-4 bsdmainutils_11.1.2 bsdutils_1:2.33.1-0.1 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.2.0-14+rpi1 cython3_0.29.2-2 dash_0.5.10.2-5 dbus_1.12.12-1 dbus-user-session_1.12.12-1 debconf_1.5.70 debhelper_12 debianutils_4.8.6.1 dh-autoreconf_19 dh-python_3.20180927 dh-strip-nondeterminism_1.1.0-1 diffutils_1:3.6-1 dirmngr_2.2.12-1+rpi1 dmsetup_2:1.02.155-1 docutils-common_0.14+dfsg-3 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-3 e2fslibs_1.44.5-1 e2fsprogs_1.44.5-1 e2fsprogs-l10n_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-2 findutils_4.6.0+git+20190105-2 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-lyx_2.3.2-1 g++_4:8.2.0-2+rpi1 g++-8_8.2.0-14+rpi1 gcc_4:8.2.0-2+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-8_8.2.0-14+rpi1 gcc-8-base_8.2.0-14+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.12-1+rpi1 gnupg-agent_2.2.12-1+rpi1 gnupg-l10n_2.2.12-1+rpi1 gnupg-utils_2.2.12-1+rpi1 gpg_2.2.12-1+rpi1 gpg-agent_2.2.12-1+rpi1 gpg-wks-client_2.2.12-1+rpi1 gpg-wks-server_2.2.12-1+rpi1 gpgconf_2.2.12-1+rpi1 gpgsm_2.2.12-1+rpi1 gpgv_2.2.12-1+rpi1 grep_3.3-1 groff-base_1.22.4-2 gzip_1.9-3 hostname_3.21 inetutils-ping_2:1.9.4-5 init-system-helpers_1.56+nmu1 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.5 klibc-utils_2.0.4-15+rpi1 kmod_25-2 krb5-locales_1.17-1 libacl1_2.2.52-3 libapparmor1_2.13.2-3 libapt-pkg5.0_1.8.0~beta1 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-14+rpi1 libassuan0_2.5.2-1 libatomic1_8.2.0-14+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2+b1 libbinutils_2.31.1-11+rpi1 libblas3_3.8.0-2 libblkid1_2.33.1-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-5+rpi1 libc-dev-bin_2.28-5+rpi1 libc6_2.28-5+rpi1 libc6-dev_2.28-5+rpi1 libcairo2_1.16.0-2 libcap-ng0_0.7.9-2 libcap2_1:2.25-1.2 libcc1-0_8.2.0-14+rpi1 libcom-err2_1.44.5-1 libcroco3_0.6.12-3 libcryptsetup12_2:2.0.6-1 libcryptsetup4_2:1.7.5-1 libcurl3-gnutls_7.63.0-1 libcurl4_7.63.0-1 libdatrie1_0.2.12-1 libdb5.3_5.3.28+dfsg1-0.2 libdbus-1-3_1.12.12-1 libdebconfclient0_0.246 libdevmapper1.02.1_2:1.02.155-1 libdpkg-perl_1.19.2 libdrm-common_2.4.95-1+rpi1 libdrm2_2.4.95-1+rpi1 libelf1_0.175-2 libexpat1_2.2.6-1 libexpat1-dev_2.2.6-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.1.0-1 libfontconfig1_2.13.1-2 libfreetype6_2.9.1-3 libfribidi0_1.0.5-3.1 libgcc-8-dev_8.2.0-14+rpi1 libgcc1_1:8.2.0-14+rpi1 libgcrypt20_1.8.4-4 libgdbm-compat4_1.18.1-2 libgdbm3_1.8.3-14 libgdbm6_1.18.1-2 libgfortran5_8.2.0-14+rpi1 libglib2.0-0_2.58.2-3 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.5-2+rpi1 libgomp1_8.2.0-14+rpi1 libgpg-error-l10n_1.33-3 libgpg-error0_1.33-3 libgraphite2-3_1.3.13-7 libgssapi-krb5-2_1.17-1 libharfbuzz0b_2.3.0-1 libhogweed4_3.4.1~rc1-1 libhts2_1.9-8 libice6_2:1.0.9-2 libicu63_63.1-6 libidn11_1.33-2.2 libidn2-0_2.0.5-1 libip4tc0_1.8.2-3 libisl19_0.20-2 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:1.5.2-2+b1 libjs-jquery_3.2.1-1 libjs-jquery-ui_1.12.1+dfsg-5 libjs-sphinxdoc_1.7.9-1 libjs-underscore_1.8.3~dfsg-2 libjson-c3_0.12.1-1.3 libk5crypto3_1.17-1 libkeyutils1_1.5.9-9.3 libklibc_2.0.4-15+rpi1 libkmod2_25-2 libkrb5-3_1.17-1 libkrb5support0_1.17-1 libksba8_1.3.5-2 liblapack3_3.8.0-2 libldap-2.4-2_2.4.47+dfsg-2 libldap-common_2.4.47+dfsg-2 liblz4-1_1.8.3-1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.35-2 libmagic1_1:5.35-2 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2~rc1-1 libncurses5_6.1+20181013-1 libncurses6_6.1+20181013-1 libncursesw5_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnettle6_3.4.1~rc1-1 libnghttp2-14_1.36.0-1 libnpth0_1.6-1 libnss-systemd_240-4+rpi1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-4 libpam-modules-bin_1.1.8-4 libpam-runtime_1.1.8-4 libpam-systemd_240-4+rpi1 libpam0g_1.1.8-4 libpango-1.0-0_1.42.4-6 libpangocairo-1.0-0_1.42.4-6 libpangoft2-1.0-0_1.42.4-6 libpaper-utils_1.1.26 libpaper1_1.1.26 libpcre3_2:8.39-11+rpi1 libperl5.24_5.24.1-4 libperl5.28_5.28.1-3 libpipeline1_1.5.1-1 libpixman-1-0_0.36.0-1 libplymouth4_0.9.4-1 libpng16-16_1.6.36-2 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libpython3-all-dev_3.7.2-1 libpython3-dev_3.7.2-1 libpython3-stdlib_3.7.2-1 libpython3.7_3.7.2-1 libpython3.7-dev_3.7.2-1 libpython3.7-minimal_3.7.2-1 libpython3.7-stdlib_3.7.2-1 libreadline7_7.0-5 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.3.3-3+b1 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm6_2:1.2.2-1+b3 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.26.0+fossilbc891ac6b-1 libss2_1.44.5-1 libssh2-1_1.8.0-2 libssl1.1_1.1.1a-1 libstdc++-8-dev_8.2.0-14+rpi1 libstdc++6_8.2.0-14+rpi1 libsystemd0_240-4+rpi1 libtasn1-6_4.13-3 libtcl8.6_8.6.9+dfsg-1 libthai-data_0.1.28-1 libthai0_0.1.28-1 libtiff5_4.0.10-3 libtinfo5_6.1+20181013-1 libtinfo6_6.1+20181013-1 libtk8.6_8.6.9-1 libtool_2.4.6-8 libubsan1_8.2.0-14+rpi1 libuchardet0_0.0.6-3 libudev1_240-4+rpi1 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.33.1-0.1 libwebp6_0.6.1-2 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb1_1.13.1-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-7+b1 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libyaml-0-2_0.2.1-1 libzstd1_1.3.8+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.18.20-2+rpi1 login_1:4.5-1.1 lsb-base_10.2018112800+rpi1 m4_1.4.18-2 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.5-1 mawk_1.3.3-17 mime-support_3.61 mount_2.33.1-0.1 multiarch-support_2.28-5+rpi1 nano_3.2-1 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 netbase_5.5 openssl_1.1.1a-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.24_5.24.1-7 perl-modules-5.28_5.28.1-3 pinentry-curses_1.1.0-1 plymouth_0.9.4-1 po-debconf_1.0.21 procps_2:3.3.15-2 python-babel-localedata_2.6.0+dfsg.1-1 python-matplotlib-data_3.0.2-2 python3_3.7.2-1 python3-alabaster_0.7.8-1 python3-all_3.7.2-1 python3-all-dev_3.7.2-1 python3-babel_2.6.0+dfsg.1-1 python3-certifi_2018.8.24-1 python3-chardet_3.0.4-3 python3-cycler_0.10.0-1 python3-dateutil_2.6.1-1 python3-dev_3.7.2-1 python3-distutils_3.7.2-3 python3-docutils_0.14+dfsg-3 python3-idna_2.6-1 python3-imagesize_1.0.0-1 python3-jinja2_2.10-1 python3-kiwisolver_1.0.1-2+b1 python3-lib2to3_3.7.2-3 python3-markupsafe_1.1.0-1 python3-matplotlib_3.0.2-2 python3-minimal_3.7.2-1 python3-nose_1.3.7-4 python3-numpy_1:1.16.0-1 python3-numpydoc_0.7.0-1 python3-packaging_19.0-1 python3-pandas_0.23.3-1 python3-pandas-lib_0.23.3-1+b1 python3-pkg-resources_40.6.3-1 python3-pygments_2.3.1+dfsg-1 python3-pyparsing_2.2.0+dfsg1-2 python3-pysam_0.15.1+ds-1+rpi1 python3-requests_2.20.0-2 python3-roman_2.0.0-3 python3-setuptools_40.6.3-1 python3-six_1.12.0-1 python3-sphinx_1.7.9-1 python3-tk_3.7.2-3 python3-tz_2018.9-1 python3-urllib3_1.24-1 python3-yaml_3.13-2 python3.7_3.7.2-1 python3.7-dev_3.7.2-1 python3.7-minimal_3.7.2-1 r-base-core_3.5.2-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-pybedtools-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sgml-base_1.29 sphinx-common_1.7.9-1 systemd_240-4+rpi1 systemd-sysv_240-4+rpi1 sysvinit-utils_2.93-5 tar_1.30+dfsg-4 tk8.6-blt2.5_2.5.3+dfsg-4 ttf-bitstream-vera_1.10-8 tzdata_2018i-1 ucf_3.0038+nmu1 udev_240-4+rpi1 unzip_6.0-21 util-linux_2.33.1-0.1 x11-common_1:7.7+19 xdg-utils_1.1.3-1 xml-core_0.18 xz-utils_5.2.2-1.3 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sat Jan 19 15:43:36 2019 UTC
gpgv:                using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1
gpgv:                issuer "moeller@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-pybedtools_0.8.0-1.dsc
dpkg-source: info: extracting python-pybedtools in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-pybedtools_0.8.0.orig.tar.gz
dpkg-source: info: unpacking python-pybedtools_0.8.0-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying spelling
dpkg-source: info: applying define_filenotfounderror_python2.patch
dpkg-source: info: applying remove_badges_from_documentation.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-98617058-5a6d-4de0-9b8f-d073be8e53ee
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package python-pybedtools
dpkg-buildpackage: info: source version 0.8.0-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean --with python3,sphinxdoc --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/bin/rm -rf fakehome .eggs .pybuild
/bin/rm -rf debian/python3-pybedtools debian/files
/bin/rm -rf pybedtools.egg-info
/bin/rm -rf pybedtools/scripts/__pycache__/
/bin/rm -rf pybedtools/contrib/__pycache__/
/bin/rm -rf pybedtools/__pycache__/
find pybedtools -name "*.so" -o -name "*.o" | xargs -r rm
rm -rf build
/bin/rm -rf pybedtools/cbedtools.cpp pybedtools/featurefuncs.cpp
find docs/source/autodocs/ -name "*.rst" | xargs -r /bin/rm
#dh_auto_clean
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules build-arch
dh build-arch --with python3,sphinxdoc --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.7 setup.py config 
running config
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
python3 setup.py cythonize
running cythonize
Compiling pybedtools/cbedtools.pyx because it changed.
Compiling pybedtools/featurefuncs.pyx because it changed.
[1/2] Cythonizing pybedtools/cbedtools.pyx
[2/2] Cythonizing pybedtools/featurefuncs.pyx
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/pybedtools/cbedtools.pxd
  tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/pybedtools/featurefuncs.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
dh_auto_build
I: pybuild base:217: /usr/bin/python3 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/bedtool.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/filenames.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/genome_registry.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/helpers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/logger.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/parallel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/paths.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/settings.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/regression_tests.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test_cbedtools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test_contrib.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test_gzip_support.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test_helpers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test_issues.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test_iter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test_len_leak.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test_scripts.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/tfuncs.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test1.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/bigbed.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/intersection_matrix.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/long_range_interaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/plotting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/venn_maker.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/bigwig.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts
copying pybedtools/scripts/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts
copying pybedtools/scripts/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts
copying pybedtools/scripts/intersection_matrix.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts
copying pybedtools/scripts/intron_exon_reads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts
copying pybedtools/scripts/peak_pie.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts
copying pybedtools/scripts/py_ms_example.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts
copying pybedtools/scripts/venn_gchart.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts
copying pybedtools/scripts/venn_mpl.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
running egg_info
creating pybedtools.egg-info
writing pybedtools.egg-info/PKG-INFO
writing dependency_links to pybedtools.egg-info/dependency_links.txt
writing requirements to pybedtools.egg-info/requires.txt
writing top-level names to pybedtools.egg-info/top_level.txt
writing manifest file 'pybedtools.egg-info/SOURCES.txt'
reading manifest file 'pybedtools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.c' under directory 'pybedtools'
warning: no previously-included files matching '__pycache__' found under directory '*'
warning: no previously-included files matching '*.py[co]' found under directory '*'
writing manifest file 'pybedtools.egg-info/SOURCES.txt'
copying pybedtools/cbedtools.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/featurefuncs.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include
copying pybedtools/include/bedFile.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include
copying pybedtools/include/bedFile.h -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include
copying pybedtools/include/fileType.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include
copying pybedtools/include/fileType.h -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include
copying pybedtools/include/gzstream.cpp -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include
copying pybedtools/include/gzstream.h -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include
copying pybedtools/include/lineFileUtilities.h -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include
copying pybedtools/test/data/1000genomes-example.vcf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/164.gtf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/a.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/a.igv_script -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/a.links.html -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/b.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/bedpe.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/bedpe2.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/c.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/d.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/democonfig.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/exons.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/expand_test.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.1.100.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.1.100.bam.bai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.50.200.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.50.200.bam.bai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.gff.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.othersort.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.sorted.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.sorted.bam.bai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/hg19.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/hg38-base.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/hg38-problem.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/issue_121.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/m1.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/mm9.bed12 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/multibamcov_test.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/reads.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/small.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/small.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/snps.bed.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/tag_test1.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/tag_test2.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test.fa -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test.fa.fai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test_bedpe.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test_peaks.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test_tsses.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/v.vcf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/vcf-stderr-test.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/vcf-stderr-test.vcf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/venn.b.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/venn.c.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/x.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/x.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/y.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/_Window.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/cbedtools.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/featurefuncs.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/cbedtools.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/test/gchart-expected.png -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/mpl-expected.png -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/prevent_open_file_regression -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test_cases.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test_merge215.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test_merge227.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test_shuffle215.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test_shuffle227.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/scripts/pybedtools -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/examples
copying pybedtools/scripts/examples/pbt_plotting_example.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/examples
running build_ext
building 'pybedtools.cbedtools' extension
creating build
creating build/temp.linux-armhf-3.7
creating build/temp.linux-armhf-3.7/pybedtools
creating build/temp.linux-armhf-3.7/pybedtools/include
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/cbedtools.cpp -o build/temp.linux-armhf-3.7/pybedtools/cbedtools.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/bedFile.cpp -o build/temp.linux-armhf-3.7/pybedtools/include/bedFile.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/fileType.cpp -o build/temp.linux-armhf-3.7/pybedtools/include/fileType.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/gzstream.cpp -o build/temp.linux-armhf-3.7/pybedtools/include/gzstream.o
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/pybedtools/cbedtools.o build/temp.linux-armhf-3.7/pybedtools/include/bedFile.o build/temp.linux-armhf-3.7/pybedtools/include/fileType.o build/temp.linux-armhf-3.7/pybedtools/include/gzstream.o -lstdc++ -lz -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/cbedtools.cpython-37m-arm-linux-gnueabihf.so
building 'pybedtools.featurefuncs' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/featurefuncs.cpp -o build/temp.linux-armhf-3.7/pybedtools/featurefuncs.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/bedFile.cpp -o build/temp.linux-armhf-3.7/pybedtools/include/bedFile.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/fileType.cpp -o build/temp.linux-armhf-3.7/pybedtools/include/fileType.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/gzstream.cpp -o build/temp.linux-armhf-3.7/pybedtools/include/gzstream.o
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/pybedtools/featurefuncs.o build/temp.linux-armhf-3.7/pybedtools/include/bedFile.o build/temp.linux-armhf-3.7/pybedtools/include/fileType.o build/temp.linux-armhf-3.7/pybedtools/include/gzstream.o -lstdc++ -lz -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/featurefuncs.cpython-37m-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.7
copying and adjusting pybedtools/scripts/venn_gchart.py -> build/scripts-3.7
copying and adjusting pybedtools/scripts/venn_mpl.py -> build/scripts-3.7
copying pybedtools/scripts/annotate.py -> build/scripts-3.7
copying and adjusting pybedtools/scripts/peak_pie.py -> build/scripts-3.7
copying and adjusting pybedtools/scripts/intersection_matrix.py -> build/scripts-3.7
copying and adjusting pybedtools/scripts/intron_exon_reads.py -> build/scripts-3.7
copying pybedtools/scripts/examples/pbt_plotting_example.py -> build/scripts-3.7
copying pybedtools/scripts/pybedtools -> build/scripts-3.7
changing mode of build/scripts-3.7/venn_gchart.py from 664 to 775
changing mode of build/scripts-3.7/venn_mpl.py from 664 to 775
changing mode of build/scripts-3.7/annotate.py from 644 to 755
changing mode of build/scripts-3.7/peak_pie.py from 664 to 775
changing mode of build/scripts-3.7/intersection_matrix.py from 664 to 775
changing mode of build/scripts-3.7/intron_exon_reads.py from 664 to 775
changing mode of build/scripts-3.7/pbt_plotting_example.py from 644 to 755
changing mode of build/scripts-3.7/pybedtools from 644 to 755
python3 setup.py develop --user
running develop
running egg_info
writing pybedtools.egg-info/PKG-INFO
writing dependency_links to pybedtools.egg-info/dependency_links.txt
writing requirements to pybedtools.egg-info/requires.txt
writing top-level names to pybedtools.egg-info/top_level.txt
reading manifest file 'pybedtools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.c' under directory 'pybedtools'
warning: no previously-included files matching '__pycache__' found under directory '*'
warning: no previously-included files matching '*.py[co]' found under directory '*'
writing manifest file 'pybedtools.egg-info/SOURCES.txt'
running build_ext
building 'pybedtools.cbedtools' extension
creating build/temp.linux-armv7l-3.7
creating build/temp.linux-armv7l-3.7/pybedtools
creating build/temp.linux-armv7l-3.7/pybedtools/include
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/cbedtools.cpp -o build/temp.linux-armv7l-3.7/pybedtools/cbedtools.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv7l-3.7/pybedtools/include/bedFile.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/fileType.cpp -o build/temp.linux-armv7l-3.7/pybedtools/include/fileType.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv7l-3.7/pybedtools/include/gzstream.o
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/pybedtools/cbedtools.o build/temp.linux-armv7l-3.7/pybedtools/include/bedFile.o build/temp.linux-armv7l-3.7/pybedtools/include/fileType.o build/temp.linux-armv7l-3.7/pybedtools/include/gzstream.o -lstdc++ -lz -o /<<PKGBUILDDIR>>/pybedtools/cbedtools.cpython-37m-arm-linux-gnueabihf.so
building 'pybedtools.featurefuncs' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/featurefuncs.cpp -o build/temp.linux-armv7l-3.7/pybedtools/featurefuncs.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv7l-3.7/pybedtools/include/bedFile.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/fileType.cpp -o build/temp.linux-armv7l-3.7/pybedtools/include/fileType.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv7l-3.7/pybedtools/include/gzstream.o
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/pybedtools/featurefuncs.o build/temp.linux-armv7l-3.7/pybedtools/include/bedFile.o build/temp.linux-armv7l-3.7/pybedtools/include/fileType.o build/temp.linux-armv7l-3.7/pybedtools/include/gzstream.o -lstdc++ -lz -o /<<PKGBUILDDIR>>/pybedtools/featurefuncs.cpython-37m-arm-linux-gnueabihf.so
Creating /<<PKGBUILDDIR>>/fakehome/.local/lib/python3.7/site-packages/pybedtools.egg-link (link to .)
Adding pybedtools 0.8.0 to easy-install.pth file
Installing venn_gchart.py script to /<<PKGBUILDDIR>>/fakehome/.local/bin
Installing venn_mpl.py script to /<<PKGBUILDDIR>>/fakehome/.local/bin
Installing annotate.py script to /<<PKGBUILDDIR>>/fakehome/.local/bin
Installing peak_pie.py script to /<<PKGBUILDDIR>>/fakehome/.local/bin
Installing intersection_matrix.py script to /<<PKGBUILDDIR>>/fakehome/.local/bin
Installing intron_exon_reads.py script to /<<PKGBUILDDIR>>/fakehome/.local/bin
Installing pbt_plotting_example.py script to /<<PKGBUILDDIR>>/fakehome/.local/bin
Installing pybedtools script to /<<PKGBUILDDIR>>/fakehome/.local/bin

Installed /<<PKGBUILDDIR>>
Processing dependencies for pybedtools==0.8.0
Searching for six==1.12.0
Best match: six 1.12.0
Adding six 1.12.0 to easy-install.pth file

Using /usr/lib/python3/dist-packages
Searching for pysam==0.15.0
Best match: pysam 0.15.0
Adding pysam 0.15.0 to easy-install.pth file

Using /usr/lib/python3/dist-packages
Finished processing dependencies for pybedtools==0.8.0
python3 setup.py build_sphinx
running build_sphinx
creating /<<PKGBUILDDIR>>/build/sphinx
creating /<<PKGBUILDDIR>>/build/sphinx/doctrees
creating /<<PKGBUILDDIR>>/build/sphinx/html
Running Sphinx v1.7.9
loading pickled environment... not yet created
[autosummary] generating autosummary for: 3-brief-examples.rst, FAQs.rst, autodoc_source.rst, changes.rst, create-a-bedtool-tutorial.rst, default-arguments.rst, each.rst, filtering.rst, flow-of-commands.rst, history.rst, ..., topical-create-a-bedtool.rst, topical-design-principles.rst, topical-documentation-contents.rst, topical-genome.rst, topical-iterators.rst, topical-low-level-ops.rst, topical-random.rst, topical-saving.rst, topical-wrapping.rst, tutorial-contents.rst
[autosummary] generating autosummary for: /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.absolute_distance.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.all_hits.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.annotate.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.any_hits.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.as_intervalfile.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.at.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_bed.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_fastq.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.bed6.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.bedpe_to_bam.rst, ..., /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.helpers.get_tempdir.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.helpers.set_bedtools_path.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.helpers.set_tempdir.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.parallel.parallel_apply.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.scripts.annotate.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.scripts.intersection_matrix.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.scripts.intron_exon_reads.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.scripts.py_ms_example.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.scripts.venn_gchart.rst, /<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.scripts.venn_mpl.rst
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 48 source files that are out of date
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/usr/lib/python3/dist-packages/numpydoc/docscrape.py:139: UserWarning: Unknown section Example
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LICENSE.txt MANIFEST.in README.rst build build-docs.sh condatest.sh debian dev-requirements.txt docker docs ez_setup.py fakehome optional-requirements.txt pybedtools pybedtools.egg-info requirements.txt setup.cfg setup.py test-requirements.txt tools NOT TESTING LICENSE.txt MANIFEST.in README.rst build build-docs.sh condatest.sh debian dev-requirements.txt docker docs ez_setup.py fakehome optional-requirements.txt pybedtools pybedtools.egg-info requirements.txt setup.cfg setup.py test-requirements.txt tools

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I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-pybedtools 
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copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools
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copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/stats.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools
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copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/regression_tests.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test
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copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/1000genomes-example.vcf -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/164.gtf -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/a.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/a.igv_script -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/a.links.html -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/bedpe.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/bedpe2.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/c.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/d.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/democonfig.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/exons.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/expand_test.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.1.100.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.1.100.bam.bai -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.50.200.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.50.200.bam.bai -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.gff.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.othersort.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.sorted.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.sorted.bam.bai -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/hg19.gff -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/hg38-base.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/hg38-problem.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/issue_121.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/m1.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/mm9.bed12 -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/multibamcov_test.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/reads.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/small.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/small.fastq -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/snps.bed.gz -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/tag_test1.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/tag_test2.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/test.fa -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/test.fa.fai -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/test_bedpe.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/test_peaks.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/test_tsses.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/v.vcf -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/vcf-stderr-test.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/vcf-stderr-test.vcf -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/venn.b.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/venn.c.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/x.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/x.bed -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/y.bam -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/gchart-expected.png -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/mpl-expected.png -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/prevent_open_file_regression -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_cases.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_merge215.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_merge227.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_shuffle215.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_shuffle227.yaml -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib/bigbed.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib/intersection_matrix.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib/long_range_interaction.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib/plotting.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib/venn_maker.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib/bigwig.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/annotate.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/intersection_matrix.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/intron_exon_reads.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/peak_pie.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/py_ms_example.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/venn_gchart.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/venn_mpl.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/pybedtools -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/examples/pbt_plotting_example.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/cbedtools.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/featurefuncs.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include/bedFile.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include/bedFile.h -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include/fileType.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include/fileType.h -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include/gzstream.cpp -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include/gzstream.h -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include/lineFileUtilities.h -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/_Window.pyx -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/cbedtools.pyx -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/featurefuncs.pyx -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/cbedtools.pxd -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/cbedtools.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/featurefuncs.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/version.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/__main__.py to __main__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/bedtool.py to bedtool.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/filenames.py to filenames.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/genome_registry.py to genome_registry.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/helpers.py to helpers.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/logger.py to logger.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/parallel.py to parallel.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/paths.py to paths.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/settings.py to settings.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/stats.py to stats.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/regression_tests.py to regression_tests.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_cbedtools.py to test_cbedtools.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_contrib.py to test_contrib.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_gzip_support.py to test_gzip_support.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_helpers.py to test_helpers.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_issues.py to test_issues.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_iter.py to test_iter.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_len_leak.py to test_len_leak.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_scripts.py to test_scripts.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/tfuncs.py to tfuncs.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test1.py to test1.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib/bigbed.py to bigbed.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib/intersection_matrix.py to intersection_matrix.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib/long_range_interaction.py to long_range_interaction.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib/plotting.py to plotting.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib/venn_maker.py to venn_maker.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib/bigwig.py to bigwig.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/annotate.py to annotate.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/intersection_matrix.py to intersection_matrix.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/intron_exon_reads.py to intron_exon_reads.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/peak_pie.py to peak_pie.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/py_ms_example.py to py_ms_example.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/venn_gchart.py to venn_gchart.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/venn_mpl.py to venn_mpl.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/examples/pbt_plotting_example.py to pbt_plotting_example.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/version.py to version.cpython-37.pyc
running install_egg_info
Copying pybedtools.egg-info to /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools-0.8.0.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/bin
copying build/scripts-3.7/venn_gchart.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/bin
copying build/scripts-3.7/venn_mpl.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/bin
copying build/scripts-3.7/annotate.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/bin
copying build/scripts-3.7/peak_pie.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/bin
copying build/scripts-3.7/intersection_matrix.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/bin
copying build/scripts-3.7/intron_exon_reads.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/bin
copying build/scripts-3.7/pbt_plotting_example.py -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/bin
copying build/scripts-3.7/pybedtools -> /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/bin/venn_gchart.py to 775
changing mode of /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/bin/venn_mpl.py to 775
changing mode of /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/bin/annotate.py to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/bin/peak_pie.py to 775
changing mode of /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/bin/intersection_matrix.py to 775
changing mode of /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/bin/intron_exon_reads.py to 775
changing mode of /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/bin/pbt_plotting_example.py to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-pybedtools/usr/bin/pybedtools to 755
rm -f debian/python3-pybedtools/usr/lib/python3*/dist-packages/pybedtools/test/prevent_open_file_regression
mkdir -p debian/pybedtools-bin/usr/bin
mv debian/python3-pybedtools/usr/bin/* debian/pybedtools-bin/usr/bin/
rm -fr debian/python-pybedtools/usr/bin
rm -fr debian/python3-pybedtools/usr/bin
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a -O--buildsystem=pybuild
   dh_sphinxdoc -a -O--buildsystem=pybuild
dh_sphinxdoc: Sphinx documentation not found
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_installexamples -a -O--buildsystem=pybuild
   dh_installman -a -O--buildsystem=pybuild
   dh_systemd_enable -a -O--buildsystem=pybuild
   dh_python3 -a -O--buildsystem=pybuild
   dh_installinit -a -O--buildsystem=pybuild
   dh_systemd_start -a -O--buildsystem=pybuild
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_strip_nondeterminism -a -O--buildsystem=pybuild
   dh_compress -a -O--buildsystem=pybuild
   dh_fixperms -a -O--buildsystem=pybuild
   dh_missing -a -O--buildsystem=pybuild
   dh_strip -a -O--buildsystem=pybuild
   dh_makeshlibs -a -O--buildsystem=pybuild
   dh_shlibdeps -a -O--buildsystem=pybuild
   dh_installdeb -a -O--buildsystem=pybuild
   dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Versions} unused, but is defined
   dh_md5sums -a -O--buildsystem=pybuild
   dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pybedtools-dbgsym' in '../python3-pybedtools-dbgsym_0.8.0-1_armhf.deb'.
dpkg-deb: building package 'python3-pybedtools' in '../python3-pybedtools_0.8.0-1_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../python-pybedtools_0.8.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-01-30T17:18:28Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


python-pybedtools_0.8.0-1_armhf.changes:
----------------------------------------

Format: 1.8
Date: Sat, 19 Jan 2019 15:41:02 +0100
Source: python-pybedtools
Binary: pybedtools-bin python3-pybedtools python-pybedtools-doc
Architecture: armhf
Version: 0.8.0-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Steffen Moeller <moeller@debian.org>
Description:
 pybedtools-bin - Scripts produced for pybedtools
 python-pybedtools-doc - Documentation for pybedtools library
 python3-pybedtools - Python 3 wrapper around BEDTools for bioinformatics work
Changes:
 python-pybedtools (0.8.0-1) unstable; urgency=medium
 .
   * New upstream version.
 .
   * d/control:
     - Standards-Version: 4.3.0
     - No Python2 packages
     - Vcs links adapted for new home on salsa.d.o
 .
   * d/copyright
     - adjusted paths for LGPL 2.1 files
     - added notion of GPL-2 (not later) files, credits for spotting
       those go to Thorsten Alteholz
       Created issue https://github.com/daler/pybedtools/issues/271
       proposing to homogenize that licensing.
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 2c517d8b25d1a4cb64076af331f1cea83aa1b51e 12122808 python3-pybedtools_0.8.0-1_armhf.deb
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Files:
 3de1ec25d524b608d22e10f1d9796e2c 8959 python optional python-pybedtools_0.8.0-1_armhf.buildinfo
 12d26f3d372cac488c55cb7f44bdd23c 1234916 debug optional python3-pybedtools-dbgsym_0.8.0-1_armhf.deb
 06bdb548afdde4c9e6e440c83fd3cd73 12122808 python optional python3-pybedtools_0.8.0-1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


python3-pybedtools-dbgsym_0.8.0-1_armhf.deb
-------------------------------------------

 new Debian package, version 2.0.
 size 1234916 bytes: control archive=612 bytes.
     455 bytes,    12 lines      control              
     212 bytes,     2 lines      md5sums              
 Package: python3-pybedtools-dbgsym
 Source: python-pybedtools
 Version: 0.8.0-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1313
 Depends: python3-pybedtools (= 0.8.0-1)
 Section: debug
 Priority: optional
 Description: debug symbols for python3-pybedtools
 Build-Ids: 4e5160363afee925e7c7ccc9953676f626aabc72 500a97682f61f7a1a67aa1be6d550e0a829add60

drwxr-xr-x root/root         0 2019-01-19 14:41 ./
drwxr-xr-x root/root         0 2019-01-19 14:41 ./usr/
drwxr-xr-x root/root         0 2019-01-19 14:41 ./usr/lib/
drwxr-xr-x root/root         0 2019-01-19 14:41 ./usr/lib/debug/
drwxr-xr-x root/root         0 2019-01-19 14:41 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2019-01-19 14:41 ./usr/lib/debug/.build-id/4e/
-rw-r--r-- root/root    462060 2019-01-19 14:41 ./usr/lib/debug/.build-id/4e/5160363afee925e7c7ccc9953676f626aabc72.debug
drwxr-xr-x root/root         0 2019-01-19 14:41 ./usr/lib/debug/.build-id/50/
-rw-r--r-- root/root    869568 2019-01-19 14:41 ./usr/lib/debug/.build-id/50/0a97682f61f7a1a67aa1be6d550e0a829add60.debug
drwxr-xr-x root/root         0 2019-01-19 14:41 ./usr/share/
drwxr-xr-x root/root         0 2019-01-19 14:41 ./usr/share/doc/
lrwxrwxrwx root/root         0 2019-01-19 14:41 ./usr/share/doc/python3-pybedtools-dbgsym -> python3-pybedtools


python3-pybedtools_0.8.0-1_armhf.deb
------------------------------------

 new Debian package, version 2.0.
 size 12122808 bytes: control archive=4580 bytes.
     784 bytes,    17 lines      control              
   12984 bytes,   133 lines      md5sums              
     262 bytes,    12 lines   *  postinst             #!/bin/sh
     411 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: python3-pybedtools
 Source: python-pybedtools
 Version: 0.8.0-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 16903
 Depends: python3 (<< 3.8), python3 (>= 3.7~), python3-pysam, python3-six, python3:any, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
 Suggests: python-pybedtools-doc
 Section: python
 Priority: optional
 Homepage: https://daler.github.io/pybedtools/
 Description: Python 3 wrapper around BEDTools for bioinformatics work
  The BEDTools suite of programs is widely used for genomic interval
  manipulation or “genome algebra”. pybedtools wraps and extends BEDTools and
  offers feature-level manipulations from within Python.
  .
  This is the Python 3 version.

drwxr-xr-x root/root         0 2019-01-19 14:41 ./
drwxr-xr-x root/root         0 2019-01-19 14:41 ./usr/
drwxr-xr-x root/root         0 2019-01-19 14:41 ./usr/lib/
drwxr-xr-x root/root         0 2019-01-19 14:41 ./usr/lib/python3/
drwxr-xr-x root/root         0 2019-01-19 14:41 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2019-01-19 14:41 ./usr/lib/python3/dist-packages/pybedtools-0.8.0.egg-info/
-rw-r--r-- root/root      3632 2019-01-19 14:41 ./usr/lib/python3/dist-packages/pybedtools-0.8.0.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2019-01-19 14:41 ./usr/lib/python3/dist-packages/pybedtools-0.8.0.egg-info/dependency_links.txt
-rw-r--r-- root/root         1 2019-01-19 14:41 ./usr/lib/python3/dist-packages/pybedtools-0.8.0.egg-info/not-zip-safe
-rw-r--r-- root/root         0 2019-01-19 14:41 ./usr/lib/python3/dist-packages/pybedtools-0.8.0.egg-info/requires.txt
-rw-r--r-- root/root        11 2019-01-19 14:41 ./usr/lib/python3/dist-packages/pybedtools-0.8.0.egg-info/top_level.txt
drwxr-xr-x root/root         0 2019-01-19 14:41 ./usr/lib/python3/dist-packages/pybedtools/
-rw-r--r-- root/root      7588 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/_Window.pyx
-rw-r--r-- root/root      4069 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/__init__.py
-rw-r--r-- root/root      1170 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/__main__.py
-rw-r--r-- root/root    128574 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/bedtool.py
-rw-r--r-- root/root    922233 2019-01-19 14:41 ./usr/lib/python3/dist-packages/pybedtools/cbedtools.cpp
-rw-r--r-- root/root    298044 2019-01-19 14:41 ./usr/lib/python3/dist-packages/pybedtools/cbedtools.cpython-37m-arm-linux-gnueabihf.so
-rw-r--r-- root/root      2653 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/cbedtools.pxd
-rw-r--r-- root/root     32222 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/cbedtools.pyx
drwxr-xr-x root/root         0 2019-01-19 14:41 ./usr/lib/python3/dist-packages/pybedtools/contrib/
-rw-r--r-- root/root       156 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/contrib/__init__.py
-rw-r--r-- root/root      2278 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/contrib/bigbed.py
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Purging /<<BUILDDIR>>
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Build Architecture: armhf
Build-Space: 94596
Build-Time: 781
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 1229
Job: python-pybedtools_0.8.0-1
Machine Architecture: armhf
Package: python-pybedtools
Package-Time: 2069
Source-Version: 0.8.0-1
Space: 94596
Status: successful
Version: 0.8.0-1
--------------------------------------------------------------------------------
Finished at 2019-01-30T17:18:28Z
Build needed 00:34:29, 94596k disc space

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