Raspbian Package Auto-Building

python-pybedtools → 0.7.10-2 → armhf → 2019-01-20 00:41:26

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03

+==============================================================================+
| python-pybedtools 0.7.10-2 (armhf)           Sat, 19 Jan 2019 23:59:50 +0000 |
+==============================================================================+

Package: python-pybedtools
Version: 0.7.10-2
Source Version: 0.7.10-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-7b133ae7-da3b-4594-9ef8-c01de62448fa' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.4 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [13.2 MB]
Fetched 24.6 MB in 27s (900 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'python-pybedtools' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/python-pybedtools.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/python-pybedtools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 12.5 MB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main python-pybedtools 0.7.10-2 (dsc) [2316 B]
Get:2 http://172.17.0.1/private buster-staging/main python-pybedtools 0.7.10-2 (tar) [12.4 MB]
Get:3 http://172.17.0.1/private buster-staging/main python-pybedtools 0.7.10-2 (diff) [28.7 kB]
Fetched 12.5 MB in 2s (5545 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-pybedtools-ora1h6/python-pybedtools-0.7.10' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-pybedtools-ora1h6' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-Tk4mnd/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-Tk4mnd/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-Tk4mnd/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Tk4mnd/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Tk4mnd/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Tk4mnd/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Tk4mnd/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Tk4mnd/apt_archive ./ Packages [428 B]
Fetched 2104 B in 1s (2945 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
  libgpg-error-l10n libnss-systemd libpam-systemd libssl1.1 openssl
  systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 36 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Tk4mnd/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14069 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 10), dh-python, bedtools, python3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-nose, python3-numpy, python3-numpydoc, python3-pandas, python3-yaml, python3-tk, python3-sphinx, cython, r-base-core, zlib1g-dev
Filtered Build-Depends: debhelper (>= 10), dh-python, bedtools, python3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-nose, python3-numpy, python3-numpydoc, python3-pandas, python3-yaml, python3-tk, python3-sphinx, cython, r-base-core, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-python-pybedtools-dummy' in '/<<BUILDDIR>>/resolver-Tk4mnd/apt_archive/sbuild-build-depends-python-pybedtools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-python-pybedtools-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Tk4mnd/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Tk4mnd/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Tk4mnd/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Tk4mnd/apt_archive ./ Sources [588 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Tk4mnd/apt_archive ./ Packages [666 B]
Fetched 2587 B in 1s (3226 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install python-pybedtools build dependencies (apt-based resolver)
-----------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  dbus dbus-user-session e2fsprogs-l10n krb5-locales libgpg-error-l10n
  libnss-systemd libpam-systemd systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bedtools blt bsdmainutils cpp-8
  cython debhelper dh-autoreconf dh-python dh-strip-nondeterminism
  docutils-common dwz file fontconfig fontconfig-config fonts-lyx g++-8 gcc-8
  gcc-8-base gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libasan5 libatomic1 libblas3 libbsd0 libcairo2 libcc1-0
  libcroco3 libcurl3-gnutls libcurl4 libdatrie1 libelf1 libexpat1-dev
  libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
  libgcc-8-dev libgcc1 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3
  libharfbuzz0b libhts2 libice6 libicu63 libjbig0 libjpeg62-turbo libjs-jquery
  libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc
  libmagic1 libmpdec2 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0
  libpangoft2-1.0-0 libpaper-utils libpaper1 libpipeline1 libpixman-1-0
  libpsl5 libpython-stdlib libpython2-stdlib libpython2.7-minimal
  libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
  libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib
  librtmp1 libsigsegv2 libsm6 libssh2-1 libstdc++-8-dev libstdc++6 libtcl8.6
  libthai-data libthai0 libtiff5 libtk8.6 libtool libubsan1 libuchardet0
  libwebp6 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1
  libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 libyaml-0-2 m4
  man-db mime-support po-debconf python python-babel-localedata
  python-matplotlib-data python-minimal python2 python2-minimal python2.7
  python2.7-minimal python3 python3-alabaster python3-all python3-all-dev
  python3-babel python3-certifi python3-chardet python3-cycler
  python3-dateutil python3-dev python3-distutils python3-docutils python3-idna
  python3-imagesize python3-jinja2 python3-kiwisolver python3-lib2to3
  python3-markupsafe python3-matplotlib python3-minimal python3-nose
  python3-numpy python3-numpydoc python3-packaging python3-pandas
  python3-pandas-lib python3-pkg-resources python3-pygments python3-pyparsing
  python3-pysam python3-requests python3-roman python3-setuptools python3-six
  python3-sphinx python3-tk python3-tz python3-urllib3 python3-yaml python3.7
  python3.7-dev python3.7-minimal r-base-core sgml-base sphinx-common
  tk8.6-blt2.5 ttf-bitstream-vera ucf unzip x11-common xdg-utils xml-core zip
  zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc blt-demo wamerican | wordlist
  whois vacation gcc-8-locales cython-doc dh-make gcc-8-doc libstdc++6-8-dbg
  libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan5-dbg
  liblsan0-dbg libtsan0-dbg libubsan1-dbg libmpx2-dbg libquadmath0-dbg
  gettext-doc libasprintf-dev libgettextpo-dev groff libjs-jquery-ui-docs
  libstdc++-8-doc tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler
  gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python-doc
  python-tk python2-doc python2.7-doc binfmt-support python3-doc python3-venv
  python-cycler-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine
  texlive-lang-french texlive-latex-base texlive-latex-recommended
  python-jinja2-doc dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape ipython3
  librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi
  python3-gi-cairo python3-gobject python3-pyqt4 python3-scipy python3-sip
  python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft
  python-nose-doc gfortran python-numpy-doc python3-pytest python3-numpy-dbg
  python-pandas-doc python-pygments-doc python-pyparsing-doc
  python3-cryptography python3-openssl python3-socks python-setuptools-doc
  imagemagick-6.q16 latexmk libjs-mathjax python3-sphinx-rtd-theme
  python3-stemmer sphinx-doc texlive-fonts-recommended texlive-generic-extra
  tix python3-tk-dbg python3.7-venv python3.7-doc ess r-doc-info | r-doc-pdf
  r-mathlib r-base-html sgml-base-doc
Recommended packages:
  python-dev curl | wget | lynx libarchive-cpio-perl libglib2.0-data
  shared-mime-info xdg-user-dirs javascript-common publicsuffix libltdl-dev
  libmail-sendmail-perl python3-pil python3-scipy python3-numexpr
  python3-tables python3-bs4 python3-html5lib python3-lxml r-recommended
  r-base-dev r-doc-html libfile-mimeinfo-perl libnet-dbus-perl
  libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bedtools blt bsdmainutils cython
  debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common
  dwz file fontconfig fontconfig-config fonts-lyx gettext gettext-base
  groff-base intltool-debian libarchive-zip-perl libblas3 libbsd0 libcairo2
  libcroco3 libcurl3-gnutls libcurl4 libdatrie1 libelf1 libexpat1-dev
  libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
  libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhts2 libice6
  libicu63 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui
  libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc libmagic1 libmpdec2
  libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
  libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpsl5 libpython-stdlib
  libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib
  libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7
  libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib librtmp1
  libsigsegv2 libsm6 libssh2-1 libtcl8.6 libthai-data libthai0 libtiff5
  libtk8.6 libtool libuchardet0 libwebp6 libx11-6 libx11-data libxau6
  libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
  libxrender1 libxss1 libxt6 libyaml-0-2 m4 man-db mime-support po-debconf
  python python-babel-localedata python-matplotlib-data python-minimal python2
  python2-minimal python2.7 python2.7-minimal python3 python3-alabaster
  python3-all python3-all-dev python3-babel python3-certifi python3-chardet
  python3-cycler python3-dateutil python3-dev python3-distutils
  python3-docutils python3-idna python3-imagesize python3-jinja2
  python3-kiwisolver python3-lib2to3 python3-markupsafe python3-matplotlib
  python3-minimal python3-nose python3-numpy python3-numpydoc
  python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources
  python3-pygments python3-pyparsing python3-pysam python3-requests
  python3-roman python3-setuptools python3-six python3-sphinx python3-tk
  python3-tz python3-urllib3 python3-yaml python3.7 python3.7-dev
  python3.7-minimal r-base-core sbuild-build-depends-python-pybedtools-dummy
  sgml-base sphinx-common tk8.6-blt2.5 ttf-bitstream-vera ucf unzip x11-common
  xdg-utils xml-core zip zlib1g-dev
The following packages will be upgraded:
  cpp-8 g++-8 gcc-8 gcc-8-base libasan5 libatomic1 libcc1-0 libgcc-8-dev
  libgcc1 libgomp1 libstdc++-8-dev libstdc++6 libubsan1
13 upgraded, 166 newly installed, 0 to remove and 23 not upgraded.
Need to get 164 MB/165 MB of archives.
After this operation, 389 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Tk4mnd/apt_archive ./ sbuild-build-depends-python-pybedtools-dummy 0.invalid.0 [956 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libubsan1 armhf 8.2.0-14+rpi1 [104 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf gcc-8-base armhf 8.2.0-14+rpi1 [189 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libgcc1 armhf 1:8.2.0-14+rpi1 [36.5 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 8.2.0-14+rpi1 [63.9 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libatomic1 armhf 8.2.0-14+rpi1 [8108 B]
Get:9 http://172.17.0.1/private buster-staging/main armhf libasan5 armhf 8.2.0-14+rpi1 [318 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf cpp-8 armhf 8.2.0-14+rpi1 [5475 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libcc1-0 armhf 8.2.0-14+rpi1 [30.1 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf g++-8 armhf 8.2.0-14+rpi1 [5941 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf gcc-8 armhf 8.2.0-14+rpi1 [5856 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libgcc-8-dev armhf 8.2.0-14+rpi1 [3754 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libstdc++-8-dev armhf 8.2.0-14+rpi1 [1565 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libstdc++6 armhf 8.2.0-14+rpi1 [324 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.4-2 [782 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-2 [25.1 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.5-1 [1231 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.15-5 [394 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.15-5 [1089 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf python2-minimal armhf 2.7.15-3 [41.3 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.15-3 [20.9 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.15-5 [1844 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.15-5 [299 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libpython2-stdlib armhf 2.7.15-3 [20.7 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.15-3 [20.7 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf python2 armhf 2.7.15-3 [41.5 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.15-3 [22.7 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libpython3.7-minimal armhf 3.7.2-1 [582 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf python3.7-minimal armhf 3.7.2-1 [1454 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.7.1-3 [36.5 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libpython3.7-stdlib armhf 3.7.2-1 [1663 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf python3.7 armhf 3.7.2-1 [323 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.7.1-3 [20.0 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.7.1-3 [61.5 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf sgml-base all 1.29 [14.8 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.35-2 [242 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.35-2 [109 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.35-2 [65.1 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf ucf all 3.0038+nmu1 [69.0 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf bedtools armhf 2.26.0+dfsg-5 [476 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.9+dfsg-1 [878 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libfreetype6 armhf 2.9.1-3 [318 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf ttf-bitstream-vera all 1.10-8 [352 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.13.1-2 [132 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.7-1 [298 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.7-1 [689 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libtk8.6 armhf 8.6.9-1 [666 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4 [468 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf blt armhf 2.5.3+dfsg-4 [14.8 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf cython armhf 0.29.2-2 [1277 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-6 [547 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 1.1.0-1 [19.5 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 1.1.0-1 [12.6 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.175-2 [157 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-3 [66.0 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.2-3 [1076 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libicu63 armhf 63.1-5 [7976 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b1 [570 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-3 [132 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf debhelper all 12 [1002 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.7.1-1 [78.7 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.7.1-1 [144 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf dh-python all 3.20180927 [95.8 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf xml-core all 0.18 [23.4 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf docutils-common all 0.14+dfsg-3 [204 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf fonts-lyx all 2.3.2-1 [199 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.2.0-14+rpi1 [206 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-2 [103 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.13.1-2 [99.3 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.16.0-2 [602 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.35.1-1+b1 [71.1 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-2 [125 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libcurl3-gnutls armhf 7.62.0-1 [284 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libcurl4 armhf 7.62.0-1 [286 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.12-1 [35.8 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.6-1 [127 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf libfribidi0 armhf 1.0.5-3.1 [62.1 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.13-7 [69.6 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 2.3.0-1 [1130 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libhts2 armhf 1.9-8 [254 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libjs-underscore all 1.8.3~dfsg-1 [63.8 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf libjs-sphinxdoc all 1.7.9-1 [92.3 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-2 [1493 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.28-1 [170 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.28-1 [50.9 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.42.4-6 [168 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-6 [61.9 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-6 [51.6 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.26 [20.0 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.26 [17.5 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf libpython3.7 armhf 3.7.2-1 [1253 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf libpython3.7-dev armhf 3.7.2-1 [47.2 MB]
Get:120 http://172.17.0.1/private buster-staging/main armhf libpython3-dev armhf 3.7.1-3 [20.1 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf libpython3-all-dev armhf 3.7.1-3 [1068 B]
Get:122 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.10-3 [235 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf libyaml-0-2 armhf 0.2.1-1 [38.8 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf python-babel-localedata all 2.6.0+dfsg.1-1 [4083 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf python-matplotlib-data all 3.0.2-2 [4138 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf python3-all armhf 3.7.1-3 [1064 B]
Get:127 http://172.17.0.1/private buster-staging/main armhf python3.7-dev armhf 3.7.2-1 [510 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf python3-dev armhf 3.7.1-3 [1264 B]
Get:129 http://172.17.0.1/private buster-staging/main armhf python3-all-dev armhf 3.7.1-3 [1068 B]
Get:130 http://172.17.0.1/private buster-staging/main armhf python3-pkg-resources all 40.6.2-1 [152 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf python3-tz all 2018.9-1 [27.0 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf python3-babel all 2.6.0+dfsg.1-1 [96.7 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf python3-certifi all 2018.8.24-1 [140 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf python3-chardet all 3.0.4-2 [80.6 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf python3-six all 1.12.0-1 [15.7 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf python3-cycler all 0.10.0-1 [7556 B]
Get:137 http://172.17.0.1/private buster-staging/main armhf python3-dateutil all 2.6.1-1 [52.8 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf python3-roman all 2.0.0-3 [8768 B]
Get:139 http://172.17.0.1/private buster-staging/main armhf python3-docutils all 0.14+dfsg-3 [377 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf python3-idna all 2.6-1 [34.3 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf python3-imagesize all 1.0.0-1 [4960 B]
Get:142 http://172.17.0.1/private buster-staging/main armhf python3-markupsafe armhf 1.1.0-1 [14.4 kB]
Get:143 http://172.17.0.1/private buster-staging/main armhf python3-jinja2 all 2.10-1 [106 kB]
Get:144 http://172.17.0.1/private buster-staging/main armhf python3-kiwisolver armhf 1.0.1-2+b1 [53.3 kB]
Get:145 http://172.17.0.1/private buster-staging/main armhf python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB]
Get:146 http://172.17.0.1/private buster-staging/main armhf python3-numpy armhf 1:1.16.0~rc2-2 [1874 kB]
Get:147 http://172.17.0.1/private buster-staging/main armhf python3-matplotlib armhf 3.0.2-2 [5282 kB]
Get:148 http://172.17.0.1/private buster-staging/main armhf python3-nose all 1.3.7-4 [132 kB]
Get:149 http://172.17.0.1/private buster-staging/main armhf sphinx-common all 1.7.9-1 [437 kB]
Get:150 http://172.17.0.1/private buster-staging/main armhf python3-alabaster all 0.7.8-1 [18.4 kB]
Get:151 http://172.17.0.1/private buster-staging/main armhf python3-packaging all 18.0-1 [20.3 kB]
Get:152 http://172.17.0.1/private buster-staging/main armhf python3-pygments all 2.2.0+dfsg-2 [588 kB]
Get:153 http://172.17.0.1/private buster-staging/main armhf python3-urllib3 all 1.24-1 [96.8 kB]
Get:154 http://172.17.0.1/private buster-staging/main armhf python3-requests all 2.20.0-2 [66.7 kB]
Get:155 http://172.17.0.1/private buster-staging/main armhf python3-sphinx all 1.7.9-1 [449 kB]
Get:156 http://172.17.0.1/private buster-staging/main armhf python3-numpydoc all 0.7.0-1 [18.3 kB]
Get:157 http://172.17.0.1/private buster-staging/main armhf python3-pandas-lib armhf 0.23.3-1+b1 [4582 kB]
Get:158 http://172.17.0.1/private buster-staging/main armhf python3-pandas all 0.23.3-1 [1743 kB]
Get:159 http://172.17.0.1/private buster-staging/main armhf python3-pysam armhf 0.15.1+ds-1+rpi1 [1440 kB]
Get:160 http://172.17.0.1/private buster-staging/main armhf python3-setuptools all 40.6.2-1 [303 kB]
Get:161 http://172.17.0.1/private buster-staging/main armhf python3-tk armhf 3.7.1-1 [98.4 kB]
Get:162 http://172.17.0.1/private buster-staging/main armhf python3-yaml armhf 3.13-2 [111 kB]
Get:163 http://172.17.0.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:164 http://172.17.0.1/private buster-staging/main armhf unzip armhf 6.0-21 [149 kB]
Get:165 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:166 http://172.17.0.1/private buster-staging/main armhf r-base-core armhf 3.5.2-1 [23.6 MB]
Get:167 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
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Setting up cpp-8 (8.2.0-14+rpi1) ...
Setting up libgomp1:armhf (8.2.0-14+rpi1) ...
Setting up libjs-jquery (3.2.1-1) ...
Setting up libatomic1:armhf (8.2.0-14+rpi1) ...
Setting up libcc1-0:armhf (8.2.0-14+rpi1) ...
Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Setting up libarchive-zip-perl (1.64-1) ...
Setting up libnghttp2-14:armhf (1.35.1-1+b1) ...
Setting up bedtools (2.26.0+dfsg-5) ...
Setting up libjs-underscore (1.8.3~dfsg-1) ...
Setting up mime-support (3.61) ...
Installing new version of config file /etc/mime.types ...
Setting up libicu63:armhf (63.1-5) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libpsl5:armhf (0.20.2-2) ...
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Setting up libglib2.0-0:armhf (2.58.2-3) ...
No schema files found: removed existing output file.
Setting up unzip (6.0-21) ...
Setting up libjs-sphinxdoc (1.7.9-1) ...
Setting up libdatrie1:armhf (0.2.12-1) ...
Setting up gettext-base (0.19.8.1-9) ...
Setting up libpipeline1:armhf (1.5.0-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ...
Setting up m4 (1.4.18-2) ...
Setting up sgml-base (1.29) ...
Setting up libbsd0:armhf (0.9.1-1) ...
Setting up ucf (3.0038+nmu1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7+b1) ...
Setting up zip (3.0-11) ...
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Setting up libmagic-mgc (1:5.35-2) ...
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Setting up libgraphite2-3:armhf (1.3.13-7) ...
Setting up libcroco3:armhf (0.6.12-3) ...
Setting up libyaml-0-2:armhf (0.2.1-1) ...
Setting up libpixman-1-0:armhf (0.36.0-1) ...
Setting up libssh2-1:armhf (1.8.0-2) ...
Processing triggers for libc-bin (2.28-2) ...
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Setting up autotools-dev (20180224.1) ...
Setting up python-babel-localedata (2.6.0+dfsg.1-1) ...
Setting up libjs-jquery-ui (1.12.1+dfsg-5) ...
Processing triggers for systemd (240-2+rpi1) ...
Setting up sphinx-common (1.7.9-1) ...
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Setting up libexpat1-dev:armhf (2.2.6-1) ...
Setting up ttf-bitstream-vera (1.10-8) ...
Setting up libtcl8.6:armhf (8.6.9+dfsg-1) ...
Setting up libthai-data (0.1.28-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up xml-core (0.18) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
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Setting up x11-common (1:7.7+19) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
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Setting up libpython2.7-stdlib:armhf (2.7.15-5) ...
Setting up libxau6:armhf (1:1.0.8-1+b2) ...
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Setting up libmpdec2:armhf (2.4.2-2) ...
Setting up fonts-lyx (2.3.2-1) ...
Setting up libwebp6:armhf (0.6.1-2) ...
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Setting up libfile-stripnondeterminism-perl (1.1.0-1) ...
Setting up libubsan1:armhf (8.2.0-14+rpi1) ...
Setting up libpaper1:armhf (1.1.26) ...

Creating config file /etc/papersize with new version
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Setting up fontconfig-config (2.13.1-2) ...
Installing new version of config file /etc/fonts/fonts.conf ...
Setting up python-matplotlib-data (3.0.2-2) ...
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Setting up libcurl3-gnutls:armhf (7.62.0-1) ...
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Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libblas3:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libpython3.7:armhf (3.7.2-1) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libpython3.7-dev:armhf (3.7.2-1) ...
Setting up libice6:armhf (2:1.0.9-2) ...
Setting up man-db (2.8.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Created symlink /etc/systemd/system/timers.target.wants/man-db.timer -> /lib/systemd/system/man-db.timer.
Setting up libpython2-stdlib:armhf (2.7.15-3) ...
Setting up libgcc-8-dev:armhf (8.2.0-14+rpi1) ...
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Setting up libfontconfig1:armhf (2.13.1-2) ...
Setting up libstdc++-8-dev:armhf (8.2.0-14+rpi1) ...
Setting up libsm6:armhf (2:1.2.2-1+b3) ...
Setting up libxcb-render0:armhf (1.13.1-2) ...
Setting up po-debconf (1.0.21) ...
Setting up python3 (3.7.1-3) ...
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Setting up liblapack3:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up python3-idna (2.6-1) ...
Setting up python3-six (1.12.0-1) ...
Setting up libx11-6:armhf (2:1.6.7-1) ...
Setting up python3-pyparsing (2.2.0+dfsg1-2) ...
Setting up python3-cycler (0.10.0-1) ...
Setting up python3-certifi (2018.8.24-1) ...
Setting up python3-pkg-resources (40.6.2-1) ...
Setting up python3.7-dev (3.7.2-1) ...
Setting up python2 (2.7.15-3) ...
Setting up python3-markupsafe (1.1.0-1) ...
Setting up gcc-8 (8.2.0-14+rpi1) ...
Setting up g++-8 (8.2.0-14+rpi1) ...
Setting up libpython-stdlib:armhf (2.7.15-3) ...
Setting up python3-pysam (0.15.1+ds-1+rpi1) ...
Setting up libpython3-all-dev:armhf (3.7.1-3) ...
Setting up python3-nose (1.3.7-4) ...
Setting up python3-chardet (3.0.4-2) ...
Setting up python3-jinja2 (2.10-1) ...
Setting up libxcb-shm0:armhf (1.13.1-2) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up python3-urllib3 (1.24-1) ...
Setting up python3-packaging (18.0-1) ...
Setting up libxft2:armhf (2.3.2-2) ...
Setting up python3-lib2to3 (3.7.1-1) ...
Setting up python3-tz (2018.9-1) ...
Setting up python3-distutils (3.7.1-1) ...
Setting up python (2.7.15-3) ...
Setting up fontconfig (2.13.1-2) ...
Regenerating fonts cache... done.
Setting up python3-dateutil (2.6.1-1) ...
Setting up python3-pygments (2.2.0+dfsg-2) ...
Setting up python3-yaml (3.13-2) ...
Setting up python3-roman (2.0.0-3) ...
Setting up python3-kiwisolver (1.0.1-2+b1) ...
Setting up python3-imagesize (1.0.0-1) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up python3-numpy (1:1.16.0~rc2-2) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up cython (0.29.2-2) ...
Setting up python3-pandas-lib (0.23.3-1+b1) ...
Setting up python3-babel (2.6.0+dfsg.1-1) ...
update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
Setting up libpango-1.0-0:armhf (1.42.4-6) ...
Setting up python3-requests (2.20.0-2) ...
Setting up python3-pandas (0.23.3-1) ...
Setting up python3-setuptools (40.6.2-1) ...
Setting up python3-matplotlib (3.0.2-2) ...
Setting up dh-python (3.20180927) ...
Setting up libcairo2:armhf (1.16.0-2) ...
Setting up libtk8.6:armhf (8.6.9-1) ...
Setting up python3-dev (3.7.1-3) ...
Setting up libpangoft2-1.0-0:armhf (1.42.4-6) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-4) ...
Setting up python3-all (3.7.1-3) ...
Setting up blt (2.5.3+dfsg-4) ...
Setting up python3-all-dev (3.7.1-3) ...
Setting up libpangocairo-1.0-0:armhf (1.42.4-6) ...
Setting up python3-tk:armhf (3.7.1-1) ...
Setting up r-base-core (3.5.2-1) ...

Creating config file /etc/R/Renviron with new version
Processing triggers for sgml-base (1.29) ...
Setting up docutils-common (0.14+dfsg-3) ...
Processing triggers for sgml-base (1.29) ...
Setting up python3-docutils (0.14+dfsg-3) ...
update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python3-sphinx (1.7.9-1) ...
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode
Setting up python3-numpydoc (0.7.0-1) ...
Setting up debhelper (12) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (1.1.0-1) ...
Setting up sbuild-build-depends-python-pybedtools-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.28-2) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.31.1-11+rpi1 dpkg-dev_1.19.2 g++-8_8.2.0-14+rpi1 gcc-8_8.2.0-14+rpi1 libc6-dev_2.28-2 libstdc++-8-dev_8.2.0-14+rpi1 libstdc++6_8.2.0-14+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.0~alpha3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 bedtools_2.26.0+dfsg-5 binutils_2.31.1-11+rpi1 binutils-arm-linux-gnueabihf_2.31.1-11+rpi1 binutils-common_2.31.1-11+rpi1 blt_2.5.3+dfsg-4 bsdmainutils_11.1.2 bsdutils_1:2.33.1-0.1 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.2.0-14+rpi1 cython_0.29.2-2 dash_0.5.10.2-4 dbus_1.12.12-1 dbus-user-session_1.12.12-1 debconf_1.5.69 debhelper_12 debianutils_4.8.6 dh-autoreconf_19 dh-python_3.20180927 dh-strip-nondeterminism_1.1.0-1 diffutils_1:3.6-1 dirmngr_2.2.12-1+rpi1 dmsetup_2:1.02.155-1 docutils-common_0.14+dfsg-3 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-3 e2fslibs_1.44.5-1 e2fsprogs_1.44.5-1 e2fsprogs-l10n_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-2 findutils_4.6.0+git+20181018-1 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-lyx_2.3.2-1 g++_4:8.2.0-2+rpi1 g++-8_8.2.0-14+rpi1 gcc_4:8.2.0-2+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1 gcc-8_8.2.0-14+rpi1 gcc-8-base_8.2.0-14+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.12-1+rpi1 gnupg-l10n_2.2.12-1+rpi1 gnupg-utils_2.2.12-1+rpi1 gpg_2.2.12-1+rpi1 gpg-agent_2.2.12-1+rpi1 gpg-wks-client_2.2.12-1+rpi1 gpg-wks-server_2.2.12-1+rpi1 gpgconf_2.2.12-1+rpi1 gpgsm_2.2.12-1+rpi1 gpgv_2.2.12-1+rpi1 grep_3.1-3 groff-base_1.22.4-2 gzip_1.9-3 hostname_3.21 inetutils-ping_2:1.9.4-5 init-system-helpers_1.56+nmu1 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-14+rpi1 kmod_25-2 krb5-locales_1.16.2-1 libacl1_2.2.52-3 libapparmor1_2.13.2-3 libapt-pkg5.0_1.8.0~alpha3 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-14+rpi1 libassuan0_2.5.2-1 libatomic1_8.2.0-14+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2+b1 libbinutils_2.31.1-11+rpi1 libblas3_3.8.0-2 libblkid1_2.33.1-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-2 libc-dev-bin_2.28-2 libc6_2.28-2 libc6-dev_2.28-2 libcairo2_1.16.0-2 libcap-ng0_0.7.9-1+b1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-14+rpi1 libcom-err2_1.44.5-1 libcroco3_0.6.12-3 libcryptsetup12_2:2.0.6-1 libcryptsetup4_2:1.7.5-1 libcurl3-gnutls_7.62.0-1 libcurl4_7.62.0-1 libdatrie1_0.2.12-1 libdb5.3_5.3.28+dfsg1-0.2 libdbus-1-3_1.12.12-1 libdebconfclient0_0.246 libdevmapper1.02.1_2:1.02.155-1 libdpkg-perl_1.19.2 libdrm-common_2.4.95-1+rpi1 libdrm2_2.4.95-1+rpi1 libelf1_0.175-2 libexpat1_2.2.6-1 libexpat1-dev_2.2.6-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.1.0-1 libfontconfig1_2.13.1-2 libfreetype6_2.9.1-3 libfribidi0_1.0.5-3.1 libgcc-8-dev_8.2.0-14+rpi1 libgcc1_1:8.2.0-14+rpi1 libgcrypt20_1.8.4-4 libgdbm-compat4_1.18.1-2 libgdbm3_1.8.3-14 libgdbm6_1.18.1-2 libgfortran5_8.2.0-14+rpi1 libglib2.0-0_2.58.2-3 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.5-2+rpi1 libgomp1_8.2.0-14+rpi1 libgpg-error-l10n_1.33-3 libgpg-error0_1.33-3 libgraphite2-3_1.3.13-7 libgssapi-krb5-2_1.16.2-1 libharfbuzz0b_2.3.0-1 libhogweed4_3.4.1~rc1-1 libhts2_1.9-8 libice6_2:1.0.9-2 libicu63_63.1-5 libidn11_1.33-2.2 libidn2-0_2.0.5-1 libip4tc0_1.8.2-3 libisl19_0.20-2 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:1.5.2-2+b1 libjs-jquery_3.2.1-1 libjs-jquery-ui_1.12.1+dfsg-5 libjs-sphinxdoc_1.7.9-1 libjs-underscore_1.8.3~dfsg-1 libjson-c3_0.12.1-1.3 libk5crypto3_1.16.2-1 libkeyutils1_1.5.9-9.3 libklibc_2.0.4-14+rpi1 libkmod2_25-2 libkrb5-3_1.16.2-1 libkrb5support0_1.16.2-1 libksba8_1.3.5-2 liblapack3_3.8.0-2 libldap-2.4-2_2.4.47+dfsg-1 libldap-common_2.4.47+dfsg-1 liblz4-1_1.8.3-1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.35-2 libmagic1_1:5.35-2 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-2 libncurses5_6.1+20181013-1 libncurses6_6.1+20181013-1 libncursesw5_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnettle6_3.4.1~rc1-1 libnghttp2-14_1.35.1-1+b1 libnpth0_1.6-1 libnss-systemd_240-2+rpi1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.8 libpam-modules-bin_1.1.8-3.8 libpam-runtime_1.1.8-3.8 libpam-systemd_240-2+rpi1 libpam0g_1.1.8-3.8 libpango-1.0-0_1.42.4-6 libpangocairo-1.0-0_1.42.4-6 libpangoft2-1.0-0_1.42.4-6 libpaper-utils_1.1.26 libpaper1_1.1.26 libpcre3_2:8.39-11+rpi1 libperl5.28_5.28.1-3 libpipeline1_1.5.0-2 libpixman-1-0_0.36.0-1 libplymouth4_0.9.4-1 libpng16-16_1.6.36-2 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libpython-stdlib_2.7.15-3 libpython2-stdlib_2.7.15-3 libpython2.7-minimal_2.7.15-5 libpython2.7-stdlib_2.7.15-5 libpython3-all-dev_3.7.1-3 libpython3-dev_3.7.1-3 libpython3-stdlib_3.7.1-3 libpython3.7_3.7.2-1 libpython3.7-dev_3.7.2-1 libpython3.7-minimal_3.7.2-1 libpython3.7-stdlib_3.7.2-1 libreadline7_7.0-5 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~rc8-1 libsasl2-modules-db_2.1.27~rc8-1 libseccomp2_2.3.3-3+b1 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm6_2:1.2.2-1+b3 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.26.0+fossilbc891ac6b-1 libss2_1.44.5-1 libssh2-1_1.8.0-2 libssl1.1_1.1.1a-1 libstdc++-8-dev_8.2.0-14+rpi1 libstdc++6_8.2.0-14+rpi1 libsystemd0_240-2+rpi1 libtasn1-6_4.13-3 libtcl8.6_8.6.9+dfsg-1 libthai-data_0.1.28-1 libthai0_0.1.28-1 libtiff5_4.0.10-3 libtinfo5_6.1+20181013-1 libtinfo6_6.1+20181013-1 libtk8.6_8.6.9-1 libtool_2.4.6-6 libubsan1_8.2.0-14+rpi1 libuchardet0_0.0.6-3 libudev1_240-2+rpi1 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libwebp6_0.6.1-2 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb1_1.13.1-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-7+b1 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libyaml-0-2_0.2.1-1 libzstd1_1.3.8+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.18.20-2+rpi1 login_1:4.5-1.1 lsb-base_10.2018112800+rpi1 m4_1.4.18-2 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.5-1 mawk_1.3.3-17 mime-support_3.61 mount_2.33.1-0.1 multiarch-support_2.28-2 nano_3.2-1 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 netbase_5.5 openssl_1.1.1a-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.28_5.28.1-3 pinentry-curses_1.1.0-1 plymouth_0.9.4-1 po-debconf_1.0.21 procps_2:3.3.15-2 python_2.7.15-3 python-babel-localedata_2.6.0+dfsg.1-1 python-matplotlib-data_3.0.2-2 python-minimal_2.7.15-3 python2_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-5 python2.7-minimal_2.7.15-5 python3_3.7.1-3 python3-alabaster_0.7.8-1 python3-all_3.7.1-3 python3-all-dev_3.7.1-3 python3-babel_2.6.0+dfsg.1-1 python3-certifi_2018.8.24-1 python3-chardet_3.0.4-2 python3-cycler_0.10.0-1 python3-dateutil_2.6.1-1 python3-dev_3.7.1-3 python3-distutils_3.7.1-1 python3-docutils_0.14+dfsg-3 python3-idna_2.6-1 python3-imagesize_1.0.0-1 python3-jinja2_2.10-1 python3-kiwisolver_1.0.1-2+b1 python3-lib2to3_3.7.1-1 python3-markupsafe_1.1.0-1 python3-matplotlib_3.0.2-2 python3-minimal_3.7.1-3 python3-nose_1.3.7-4 python3-numpy_1:1.16.0~rc2-2 python3-numpydoc_0.7.0-1 python3-packaging_18.0-1 python3-pandas_0.23.3-1 python3-pandas-lib_0.23.3-1+b1 python3-pkg-resources_40.6.2-1 python3-pygments_2.2.0+dfsg-2 python3-pyparsing_2.2.0+dfsg1-2 python3-pysam_0.15.1+ds-1+rpi1 python3-requests_2.20.0-2 python3-roman_2.0.0-3 python3-setuptools_40.6.2-1 python3-six_1.12.0-1 python3-sphinx_1.7.9-1 python3-tk_3.7.1-1 python3-tz_2018.9-1 python3-urllib3_1.24-1 python3-yaml_3.13-2 python3.7_3.7.2-1 python3.7-dev_3.7.2-1 python3.7-minimal_3.7.2-1 r-base-core_3.5.2-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-pybedtools-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sgml-base_1.29 sphinx-common_1.7.9-1 systemd_240-2+rpi1 systemd-sysv_240-2+rpi1 sysvinit-utils_2.93-3 tar_1.30+dfsg-4 tk8.6-blt2.5_2.5.3+dfsg-4 ttf-bitstream-vera_1.10-8 tzdata_2018i-1 ucf_3.0038+nmu1 udev_240-2+rpi1 unzip_6.0-21 util-linux_2.33.1-0.1 x11-common_1:7.7+19 xdg-utils_1.1.3-1 xml-core_0.18 xz-utils_5.2.2-1.3 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Nov  9 11:12:00 2017 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-pybedtools_0.7.10-2.dsc
dpkg-source: info: extracting python-pybedtools in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-pybedtools_0.7.10.orig.tar.gz
dpkg-source: info: unpacking python-pybedtools_0.7.10-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying spelling
dpkg-source: info: applying enable-package-data
dpkg-source: info: applying disable-write-version
dpkg-source: info: applying disable-test-156
dpkg-source: info: applying rename-scripts
dpkg-source: info: applying c8dff864dbc942bb7adb3e719b0702f7e3989d36.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-7b133ae7-da3b-4594-9ef8-c01de62448fa
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package python-pybedtools
dpkg-buildpackage: info: source version 0.7.10-2
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean --with python3,sphinxdoc --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:217: python3.7 setup.py clean 
running clean
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules build-arch
dh build-arch --with python3,sphinxdoc --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.7 setup.py config 
/usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/pybedtools/_Window.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/pybedtools/cbedtools.pxd
  tree = Parsing.p_module(s, pxd, full_module_name)
warning: cbedtools.pyx:766:16: Unreachable code
/usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/pybedtools/featurefuncs.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
Processing pybedtools/_Window.pyx
Processing pybedtools/cbedtools.pyx
Processing pybedtools/featurefuncs.pyx
Cythonizing sources
running config
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
I: pybuild base:217: /usr/bin/python3 setup.py build 
pybedtools/_Window.pyx has not changed
pybedtools/cbedtools.pyx has not changed
pybedtools/featurefuncs.pyx has not changed
Cythonizing sources
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/bedtool.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/filenames.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/genome_registry.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/helpers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/logger.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/parallel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/settings.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/regression_tests.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test_cbedtools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test_contrib.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test_gzip_support.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test_helpers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test_iter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test_len_leak.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test_scripts.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/tfuncs.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test1.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/bigbed.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/classifier.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/intersection_matrix.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/long_range_interaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/plotting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/venn_maker.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib
copying pybedtools/contrib/bigwig.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts
copying pybedtools/scripts/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts
copying pybedtools/scripts/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts
copying pybedtools/scripts/intersection_matrix.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts
copying pybedtools/scripts/intron_exon_reads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts
copying pybedtools/scripts/peak_pie.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts
copying pybedtools/scripts/py_ms_example.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts
copying pybedtools/scripts/venn_gchart.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts
copying pybedtools/scripts/venn_mpl.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
running egg_info
creating pybedtools.egg-info
writing pybedtools.egg-info/PKG-INFO
writing dependency_links to pybedtools.egg-info/dependency_links.txt
writing entry points to pybedtools.egg-info/entry_points.txt
writing requirements to pybedtools.egg-info/requires.txt
writing top-level names to pybedtools.egg-info/top_level.txt
writing manifest file 'pybedtools.egg-info/SOURCES.txt'
reading manifest file 'pybedtools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '__pycache__' found under directory '*'
warning: no previously-included files matching '*.py[co]' found under directory '*'
writing manifest file 'pybedtools.egg-info/SOURCES.txt'
copying pybedtools/_Window.c -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/cbedtools.cxx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/featurefuncs.cxx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/test/data/1000genomes-example.vcf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/164.gtf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/a.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/a.igv_script -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/a.links.html -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/b.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/bedpe.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/bedpe2.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/c.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/d.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/democonfig.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/exons.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/expand_test.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.1.100.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.1.100.bam.bai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.50.200.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.50.200.bam.bai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.gff.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.othersort.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.sorted.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/gdc.sorted.bam.bai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/hg19.gff -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/hg38-base.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/hg38-problem.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/issue_121.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/m1.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/mm9.bed12 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/multibamcov_test.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/reads.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/small.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/small.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/snps.bed.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/tag_test1.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/tag_test2.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test.fa -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test.fa.fai -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test_bedpe.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test_peaks.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/test_tsses.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/v.vcf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/vcf-stderr-test.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/vcf-stderr-test.vcf -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/venn.b.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/venn.c.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/x.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/x.bed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/test/data/y.bam -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data
copying pybedtools/_Window.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/cbedtools.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/featurefuncs.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/cbedtools.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools
copying pybedtools/test/gchart-expected.png -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/mpl-expected.png -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/prevent_open_file_regression -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
copying pybedtools/test/test_cases.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test
running build_ext
building 'pybedtools.cbedtools' extension
creating build
creating build/temp.linux-armhf-3.7
creating build/temp.linux-armhf-3.7/src
creating build/temp.linux-armhf-3.7/pybedtools
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.7m -c src/bedFile.cpp -o build/temp.linux-armhf-3.7/src/bedFile.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.7m -c src/fileType.cpp -o build/temp.linux-armhf-3.7/src/fileType.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.7m -c src/gzstream.cpp -o build/temp.linux-armhf-3.7/src/gzstream.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.7m -c pybedtools/cbedtools.cxx -o build/temp.linux-armhf-3.7/pybedtools/cbedtools.o
pybedtools/cbedtools.cxx:8896:12: warning: 'int __pyx_pw_10pybedtools_9cbedtools_8Interval_25__nonzero__(PyObject*)' defined but not used [-Wunused-function]
 static int __pyx_pw_10pybedtools_9cbedtools_8Interval_25__nonzero__(PyObject *__pyx_v_self) {
            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/src/bedFile.o build/temp.linux-armhf-3.7/src/fileType.o build/temp.linux-armhf-3.7/src/gzstream.o build/temp.linux-armhf-3.7/pybedtools/cbedtools.o -lstdc++ -lz -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/cbedtools.cpython-37m-arm-linux-gnueabihf.so
building 'pybedtools.featurefuncs' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.7m -c src/bedFile.cpp -o build/temp.linux-armhf-3.7/src/bedFile.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.7m -c src/fileType.cpp -o build/temp.linux-armhf-3.7/src/fileType.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.7m -c src/gzstream.cpp -o build/temp.linux-armhf-3.7/src/gzstream.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.7m -c pybedtools/featurefuncs.cxx -o build/temp.linux-armhf-3.7/pybedtools/featurefuncs.o
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/src/bedFile.o build/temp.linux-armhf-3.7/src/fileType.o build/temp.linux-armhf-3.7/src/gzstream.o build/temp.linux-armhf-3.7/pybedtools/featurefuncs.o -lstdc++ -lz -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/featurefuncs.cpython-37m-arm-linux-gnueabihf.so
python3 setup.py develop --user
pybedtools/_Window.pyx has not changed
pybedtools/cbedtools.pyx has not changed
pybedtools/featurefuncs.pyx has not changed
Cythonizing sources
running develop
running egg_info
writing pybedtools.egg-info/PKG-INFO
writing dependency_links to pybedtools.egg-info/dependency_links.txt
writing entry points to pybedtools.egg-info/entry_points.txt
writing requirements to pybedtools.egg-info/requires.txt
writing top-level names to pybedtools.egg-info/top_level.txt
reading manifest file 'pybedtools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '__pycache__' found under directory '*'
warning: no previously-included files matching '*.py[co]' found under directory '*'
writing manifest file 'pybedtools.egg-info/SOURCES.txt'
running build_ext
building 'pybedtools.cbedtools' extension
creating build/temp.linux-armv7l-3.7
creating build/temp.linux-armv7l-3.7/src
creating build/temp.linux-armv7l-3.7/pybedtools
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.7m -c src/bedFile.cpp -o build/temp.linux-armv7l-3.7/src/bedFile.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.7m -c src/fileType.cpp -o build/temp.linux-armv7l-3.7/src/fileType.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.7m -c src/gzstream.cpp -o build/temp.linux-armv7l-3.7/src/gzstream.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.7m -c pybedtools/cbedtools.cxx -o build/temp.linux-armv7l-3.7/pybedtools/cbedtools.o
pybedtools/cbedtools.cxx:8896:12: warning: 'int __pyx_pw_10pybedtools_9cbedtools_8Interval_25__nonzero__(PyObject*)' defined but not used [-Wunused-function]
 static int __pyx_pw_10pybedtools_9cbedtools_8Interval_25__nonzero__(PyObject *__pyx_v_self) {
            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/src/bedFile.o build/temp.linux-armv7l-3.7/src/fileType.o build/temp.linux-armv7l-3.7/src/gzstream.o build/temp.linux-armv7l-3.7/pybedtools/cbedtools.o -lstdc++ -lz -o /<<PKGBUILDDIR>>/pybedtools/cbedtools.cpython-37m-arm-linux-gnueabihf.so
building 'pybedtools.featurefuncs' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.7m -c src/bedFile.cpp -o build/temp.linux-armv7l-3.7/src/bedFile.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.7m -c src/fileType.cpp -o build/temp.linux-armv7l-3.7/src/fileType.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.7m -c src/gzstream.cpp -o build/temp.linux-armv7l-3.7/src/gzstream.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.7m -c pybedtools/featurefuncs.cxx -o build/temp.linux-armv7l-3.7/pybedtools/featurefuncs.o
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/src/bedFile.o build/temp.linux-armv7l-3.7/src/fileType.o build/temp.linux-armv7l-3.7/src/gzstream.o build/temp.linux-armv7l-3.7/pybedtools/featurefuncs.o -lstdc++ -lz -o /<<PKGBUILDDIR>>/pybedtools/featurefuncs.cpython-37m-arm-linux-gnueabihf.so
Creating /<<PKGBUILDDIR>>/fakehome/.local/lib/python3.7/site-packages/pybedtools.egg-link (link to .)
Adding pybedtools 0.7.9 to easy-install.pth file
Installing pybedtools-annotate script to /<<PKGBUILDDIR>>/fakehome/.local/bin
Installing pybedtools-intersection_matrix script to /<<PKGBUILDDIR>>/fakehome/.local/bin
Installing pybedtools-intron_exon_reads script to /<<PKGBUILDDIR>>/fakehome/.local/bin
Installing pybedtools-peak_pie script to /<<PKGBUILDDIR>>/fakehome/.local/bin
Installing pybedtools-venn_gchart script to /<<PKGBUILDDIR>>/fakehome/.local/bin
Installing pybedtools-venn_mpl script to /<<PKGBUILDDIR>>/fakehome/.local/bin

Installed /<<PKGBUILDDIR>>
Processing dependencies for pybedtools==0.7.9
Searching for six==1.12.0
Best match: six 1.12.0
Adding six 1.12.0 to easy-install.pth file

Using /usr/lib/python3/dist-packages
Finished processing dependencies for pybedtools==0.7.9
python3 setup.py build_sphinx
pybedtools/_Window.pyx has not changed
pybedtools/cbedtools.pyx has not changed
pybedtools/featurefuncs.pyx has not changed
Cythonizing sources
running build_sphinx
creating /<<PKGBUILDDIR>>/build/sphinx
creating /<<PKGBUILDDIR>>/build/sphinx/doctrees
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[autosummary] generating autosummary for: 3-brief-examples.rst, FAQs.rst, autodoc_source.rst, autodocs/pybedtools.contrib.plotting.Track.rst, changes.rst, create-a-bedtool-tutorial.rst, default-arguments.rst, each.rst, filtering.rst, flow-of-commands.rst, ..., topical-create-a-bedtool.rst, topical-design-principles.rst, topical-documentation-contents.rst, topical-genome.rst, topical-iterators.rst, topical-low-level-ops.rst, topical-random.rst, topical-saving.rst, topical-wrapping.rst, tutorial-contents.rst
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writing output... [ 82%] pybedtools.featurefuncs.TSS
writing output... [ 83%] pybedtools.featurefuncs.add_color
writing output... [ 83%] pybedtools.featurefuncs.bed2gff
writing output... [ 84%] pybedtools.featurefuncs.bedgraph_scale
writing output... [ 84%] pybedtools.featurefuncs.center
writing output... [ 85%] pybedtools.featurefuncs.extend_fields
writing output... [ 86%] pybedtools.featurefuncs.five_prime
writing output... [ 86%] pybedtools.featurefuncs.gff2bed
writing output... [ 87%] pybedtools.featurefuncs.greater_than
writing output... [ 87%] pybedtools.featurefuncs.less_than
writing output... [ 88%] pybedtools.featurefuncs.midpoint
writing output... [ 89%] pybedtools.featurefuncs.normalized_to_length
writing output... [ 89%] pybedtools.featurefuncs.rename
writing output... [ 90%] pybedtools.featurefuncs.three_prime
writing output... [ 90%] save-results
writing output... [ 91%] scripts
writing output... [ 92%] sh-comparison
writing output... [ 92%] topical-bam
writing output... [ 93%] topical-bam-semantics
writing output... [ 93%] topical-comparisons
writing output... [ 94%] topical-create-a-bedtool
writing output... [ 95%] topical-design-principles
writing output... [ 95%] topical-documentation-contents
writing output... [ 96%] topical-genome
writing output... [ 96%] topical-iterators
writing output... [ 97%] topical-low-level-ops
writing output... [ 98%] topical-random
writing output... [ 98%] topical-saving
writing output... [ 99%] topical-wrapping
writing output... [100%] tutorial-contents

/<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.expand.rst:13: WARNING: Could not lex literal_block as "python". Highlighting skipped.
/<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.groupby.rst:32: WARNING: Could not lex literal_block as "python". Highlighting skipped.
/<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.overlap.rst:24: WARNING: Could not lex literal_block as "python". Highlighting skipped.
/<<PKGBUILDDIR>>/docs/source/autodocs/pybedtools.bedtool.BedTool.window_maker.rst:20: WARNING: Could not lex literal_block as "python". Highlighting skipped.
/<<PKGBUILDDIR>>/docs/source/default-arguments.rst:35: WARNING: Could not lex literal_block as "python". Highlighting skipped.
/<<PKGBUILDDIR>>/docs/source/topical-design-principles.rst:120: WARNING: unknown option: mergeBed -i
/<<PKGBUILDDIR>>/docs/source/topical-design-principles.rst:127: WARNING: unknown option: -i
generating indices... genindex py-modindex
highlighting module code... [  7%] pybedtools
highlighting module code... [ 14%] pybedtools.bedtool
highlighting module code... [ 21%] pybedtools.cbedtools
highlighting module code... [ 28%] pybedtools.contrib.bigbed
highlighting module code... [ 35%] pybedtools.contrib.bigwig
highlighting module code... [ 42%] pybedtools.contrib.classifier
highlighting module code... [ 50%] pybedtools.contrib.intersection_matrix
highlighting module code... [ 57%] pybedtools.contrib.long_range_interaction
highlighting module code... [ 64%] pybedtools.contrib.plotting
highlighting module code... [ 71%] pybedtools.contrib.venn_maker
highlighting module code... [ 78%] pybedtools.featurefuncs
highlighting module code... [ 85%] pybedtools.filenames
highlighting module code... [ 92%] pybedtools.helpers
highlighting module code... [100%] pybedtools.parallel

writing additional pages... search
copying images... [ 50%] images/gchart.png
copying images... [100%] images/mpl.png

copying static files... done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 9 warnings.

The HTML pages are in build/sphinx/html.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild pybuild:269: cp /<<PKGBUILDDIR>>/debian/mpl-expected.png /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build; python3.7 -m nose -v --attr '!url' 
regression test for #98 ... ok
supplement to the more general test in test_cbedtools.IntervalTest.testGetItemNegative ... ok
pybedtools.test.test1.test_tuple_creation ... ok
pybedtools.test.test1.test_tabix ... ok
pybedtools.test.test1.test_tabix_intervals ... ok
Stream and file-based equality, both whole-file and Interval by ... ok
Second-level streaming using self-intersections ... ok
Equality of BedTools created from file, iter(), and generator ... ok
pybedtools.test.test1.test_stream_of_generator ... ok
regression test to make sure many files can be created ... ok
Malformed BED lines should raise MalformedBedLineError ... ok
Remove_invalid() removes invalid lines, track lines, and comments ... ok
Iterator handles extra fields from long features (BED+GFF -wao intersection) ... ok
Iterator should ignore non-BED lines ... ok
Indexing into BedTools ... ok
Regression test on file_type checks ... ok
pybedtools.test.test1.test_introns ... ok
Calling slop with no genome should raise ValueError ... ok
pybedtools.test.test1.test_closest ... ok
From UCSC: ... ok
pybedtools.test.test1.test_add_subtract ... ok
pybedtools.test.test1.test_subset ... ok
pybedtools.test.test1.test_eq ... ok
pybedtools.test.test1.test_hash ... ok
pybedtools.test.test1.test_count_bed ... ok
pybedtools.test.test1.test_feature_centers ... ok
pybedtools.test.test1.test_bedtool_creation ... ok
pybedtools.test.test1.test_special_methods ... ok
pybedtools.test.test1.test_field_count ... ok
pybedtools.test.test1.test_repr_and_printing ... ok
pybedtools.test.test1.test_cut ... ok
pybedtools.test.test1.test_filter ... ok
pybedtools.test.test1.test_random_intersection ... ok
pybedtools.test.test1.test_cat ... ok
pybedtools.test.test1.test_issue_138 ... ok
pybedtools.test.test1.test_randomstats ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/bedtool.py:2498: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
  pct = (np.mean(a_len[idx]) / n) * 100.0
FAIL
pybedtools.test.test1.test_gff_stuff ... ok
pybedtools.test.test1.test_name ... ok
pybedtools.test.test1.test_flatten ... ok
pybedtools.test.test1.test_history_step ... ok
pybedtools.test.test1.test_kwargs ... ok
pybedtools.test.test1.test_is_gzip ... ok
pybedtools.test.test1.test_gzip ... ok
pybedtools.test.test1.test_bam_bedtool_creation ... ok
pybedtools.test.test1.test_print_abam ... ok
pybedtools.test.test1.test_bam_iter ... ok
pybedtools.test.test1.test_bam_interval ... ok
pybedtools.test.test1.test_bam_regression ... ok
pybedtools.test.test1.test_sam_filetype ... ok
test directly from #135 ... ok
pybedtools.test.test1.test_bam_to_sam_to_bam ... ok
pybedtools.test.test1.test_bam_filetype ... ok
pybedtools.test.test1.test_bam_header ... ok
pybedtools.test.test1.test_output_kwarg ... ok
pybedtools.test.test1.test_copy ... ok
pybedtools.test.test1.test_pickleable ... ok
pybedtools.test.test1.test_split ... ok
pybedtools.test.test1.test_additional_args ... ok
pybedtools.test.test1.test_tss ... ok
pybedtools.test.test1.test_extend_fields ... ok
pybedtools.test.test1.test_gff2bed ... ok
pybedtools.test.test1.test_add_color ... ok
pybedtools.test.test1.test_any_hits ... ok
pybedtools.test.test1.test_all_hits ... ok
pybedtools.test.test1.test_count_hits ... ok
pybedtools.test.test1.test_multi_intersect ... ok
pybedtools.test.test1.test_union_bedgraphs ... ok
pybedtools.test.test1.test_window_maker ... ok
pybedtools.test.test1.test_random ... FAIL
pybedtools.test.test1.test_links ... ok
pybedtools.test.test1.test_igv ... ok
pybedtools.test.test1.test_bam_to_fastq ... ok
pybedtools.test.test1.test_gtf_gff_attrs ... ok
pybedtools.test.test1.test_jaccard ... ok
pybedtools.test.test1.test_reldist ... FAIL
from #134 ... ok
Regression test; in previous versions this would cause a segfault. ... ok
pybedtools.test.test1.test_empty_overloaded_ops ... ok
pybedtools.test.test1.test_issue_81 ... ok
pybedtools.test.test1.test_to_dataframe ... FAIL
pybedtools.test.test1.test_tail ... ok
pybedtools.test.test1.test_fisher ... ok
pybedtools.test.test1.test_zero_len_boolean ... ok
pybedtools.test.test1.test_chromsizes_in_5prime_3prime ... ok
pybedtools.test.test1.test_issue_143 ... ok
pybedtools.test.test1.test_issue_145 ... ok
pybedtools.test.test1.test_issue_141 ... ok
pybedtools.test.test1.test_issue_147 ... ok
pybedtools.test.test1.test_issue_154 ... ok
pybedtools.test.test1.test_issue_151 ... ok
pybedtools.test.test1.test_issue_156 ... ok
pybedtools.test.test1.test_issue_157 ... ok
pybedtools.test.test1.test_PR_158 ... ok
pybedtools.test.test1.test_issue_162 ... ok
pybedtools.test.test1.test_issue_164 ... ok
pybedtools.test.test1.test_issue_168 ... ok
pybedtools.test.test1.test_issue_169 ... ok
pybedtools.test.test1.test_issue_196 ... ok
pybedtools.test.test1.test_issue_178 ... ok
pybedtools.test.test1.test_issue_203 ... ok
testAppend (pybedtools.test.test_cbedtools.IntervalFileGFFTest) ... ok
testEnds (pybedtools.test.test_cbedtools.IntervalFileGFFTest) ... ok
getitem now supports direct access to the line. ... ok
test negative indexes to feature. ... ok
getitem now supports direct access to the line. ... ok
test support for funky slices. ... ok
testGetItemString (pybedtools.test.test_cbedtools.IntervalFileGFFTest) ... ok
testLengths (pybedtools.test.test_cbedtools.IntervalFileGFFTest) ... ok
testName (pybedtools.test.test_cbedtools.IntervalFileGFFTest) ... ok
testSetAttrs (pybedtools.test.test_cbedtools.IntervalFileGFFTest) ... ok
testSetItem (pybedtools.test.test_cbedtools.IntervalFileGFFTest) ... ok
testSetItemString (pybedtools.test.test_cbedtools.IntervalFileGFFTest) ... ok
testStart (pybedtools.test.test_cbedtools.IntervalFileGFFTest) ... ok
testStrand (pybedtools.test.test_cbedtools.IntervalFileGFFTest) ... ok
testFileType (pybedtools.test.test_cbedtools.IntervalFileGzTest) ... ok
testOverlaps (pybedtools.test.test_cbedtools.IntervalFileGzTest) ... ok
testRichCmp (pybedtools.test.test_cbedtools.IntervalFileGzTest) ... ok
testStrands (pybedtools.test.test_cbedtools.IntervalFileGzTest) ... ok
testFileType (pybedtools.test.test_cbedtools.IntervalFileTest) ... ok
testOverlaps (pybedtools.test.test_cbedtools.IntervalFileTest) ... ok
testRichCmp (pybedtools.test.test_cbedtools.IntervalFileTest) ... ok
testStrands (pybedtools.test.test_cbedtools.IntervalFileTest) ... ok
testAppend (pybedtools.test.test_cbedtools.IntervalTest) ... ok
testEnds (pybedtools.test.test_cbedtools.IntervalTest) ... ok
getitem now supports direct access to the line. ... ok
test negative indexes to feature. ... ok
getitem now supports direct access to the line. ... ok
test support for funky slices. ... ok
testGetItemString (pybedtools.test.test_cbedtools.IntervalTest) ... ok
testLengths (pybedtools.test.test_cbedtools.IntervalTest) ... ok
testName (pybedtools.test.test_cbedtools.IntervalTest) ... ok
testSetAttrs (pybedtools.test.test_cbedtools.IntervalTest) ... ok
testSetItem (pybedtools.test.test_cbedtools.IntervalTest) ... ok
testSetItemString (pybedtools.test.test_cbedtools.IntervalTest) ... ok
testStart (pybedtools.test.test_cbedtools.IntervalTest) ... ok
testStrand (pybedtools.test.test_cbedtools.IntervalTest) ... ok
pybedtools.test.test_cbedtools.test_zero_length_regression ... ok
pybedtools.test.test_cbedtools.test_issue_123 ... ok
previously this would crash the interpreter due to an exit(1) call in ... ok
pybedtools.test.test_contrib.test_cleaned_intersect ... ok
pybedtools.test.test_contrib.test_venn_maker_3way_1empty ... ok
pybedtools.test.test_gzip_support.test_gzipped_file_types_are_bed ... ok
pybedtools.test.test_gzip_support.test_gzipped_files_can_be_intersected ... ok
pybedtools.test.test_gzip_support.test_gzipped_files_are_iterable_as_normal ... ok
pybedtools.test.test_gzip_support.test_str_representation_of_gzipped_files_is_the_same_as_normal ... ok
pybedtools.test.test_gzip_support.test_head_of_gzipped_files_is_the_same_as_normal ... ok
pybedtools.test.test_gzip_support.test_gzipped_output ... ok
pybedtools.test.test_gzip_support.test_gzipping_is_default_when_extension_is_dot_gz ... ok
pybedtools.test.test_gzip_support.test_gzipping_can_be_turned_off_even_for_dot_gz ... ok
pybedtools.test.test_helpers.test_isBAM ... ok
make sure the tempdir and cleanup work ... ok
pybedtools.test.test_helpers.test_bedtools_check ... ok
pybedtools.test.test_helpers.test_call ... ok
pybedtools.test.test_helpers.test_ff_center ... ok
pybedtools.test.test_helpers.test_getting_example_beds ... ok
intersect, a=filename, b=generator abam=False bbam=False, {'s': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22e6870>)>} ... ok
intersect, a=filename, b=stream abam=False bbam=False, {'s': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
intersect, a=filename, b=gzip abam=False bbam=False, {'s': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.6ftacxp9.tmp)>} ... ok
intersect, a=generator, b=filename abam=False bbam=False, {'s': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
intersect, a=generator, b=stream abam=False bbam=False, {'s': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
intersect, a=generator, b=gzip abam=False bbam=False, {'s': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.n_nyuxfw.tmp)>} ... ok
intersect, a=stream, b=filename abam=False bbam=False, {'s': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
intersect, a=stream, b=generator abam=False bbam=False, {'s': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22e6830>)>} ... ok
intersect, a=stream, b=gzip abam=False bbam=False, {'s': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.q82oruci.tmp)>} ... ok
intersect, a=gzip, b=filename abam=False bbam=False, {'s': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
intersect, a=gzip, b=generator abam=False bbam=False, {'s': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22e66b0>)>} ... ok
intersect, a=gzip, b=stream abam=False bbam=False, {'s': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
intersect, a=filename, b=generator abam=False bbam=False, {'s': False, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22e68f0>)>} ... ok
intersect, a=filename, b=stream abam=False bbam=False, {'s': False, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
intersect, a=filename, b=gzip abam=False bbam=False, {'s': False, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.we__h0r9.tmp)>} ... ok
intersect, a=generator, b=filename abam=False bbam=False, {'s': False, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
intersect, a=generator, b=stream abam=False bbam=False, {'s': False, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
intersect, a=generator, b=gzip abam=False bbam=False, {'s': False, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.opltmmje.tmp)>} ... ok
intersect, a=stream, b=filename abam=False bbam=False, {'s': False, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
intersect, a=stream, b=generator abam=False bbam=False, {'s': False, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22e6a30>)>} ... ok
intersect, a=stream, b=gzip abam=False bbam=False, {'s': False, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.dyl6rkgc.tmp)>} ... ok
intersect, a=gzip, b=filename abam=False bbam=False, {'s': False, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
intersect, a=gzip, b=generator abam=False bbam=False, {'s': False, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22e6a70>)>} ... ok
intersect, a=gzip, b=stream abam=False bbam=False, {'s': False, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
intersect, a=filename, b=generator abam=False bbam=False, {'u': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22e6af0>)>} ... ok
intersect, a=filename, b=stream abam=False bbam=False, {'u': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
intersect, a=filename, b=gzip abam=False bbam=False, {'u': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.3ob47z5y.tmp)>} ... ok
intersect, a=generator, b=filename abam=False bbam=False, {'u': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
intersect, a=generator, b=stream abam=False bbam=False, {'u': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
intersect, a=generator, b=gzip abam=False bbam=False, {'u': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.xs_pjlg2.tmp)>} ... ok
intersect, a=stream, b=filename abam=False bbam=False, {'u': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
intersect, a=stream, b=generator abam=False bbam=False, {'u': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22e6970>)>} ... ok
intersect, a=stream, b=gzip abam=False bbam=False, {'u': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.37auo1rn.tmp)>} ... ok
intersect, a=gzip, b=filename abam=False bbam=False, {'u': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
intersect, a=gzip, b=generator abam=False bbam=False, {'u': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22e6930>)>} ... ok
intersect, a=gzip, b=stream abam=False bbam=False, {'u': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
intersect, a=filename, b=generator abam=False bbam=False, {'u': True, 's': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22e6bf0>)>} ... ok
intersect, a=filename, b=stream abam=False bbam=False, {'u': True, 's': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
intersect, a=filename, b=gzip abam=False bbam=False, {'u': True, 's': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.2utjdpzj.tmp)>} ... ok
intersect, a=generator, b=filename abam=False bbam=False, {'u': True, 's': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
intersect, a=generator, b=stream abam=False bbam=False, {'u': True, 's': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
intersect, a=generator, b=gzip abam=False bbam=False, {'u': True, 's': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.ewqjm_eg.tmp)>} ... ok
intersect, a=stream, b=filename abam=False bbam=False, {'u': True, 's': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
intersect, a=stream, b=generator abam=False bbam=False, {'u': True, 's': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22e6cb0>)>} ... ok
intersect, a=stream, b=gzip abam=False bbam=False, {'u': True, 's': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.4gpim1je.tmp)>} ... ok
intersect, a=gzip, b=filename abam=False bbam=False, {'u': True, 's': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
intersect, a=gzip, b=generator abam=False bbam=False, {'u': True, 's': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22e6cf0>)>} ... ok
intersect, a=gzip, b=stream abam=False bbam=False, {'u': True, 's': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
intersect, a=filename, b=generator abam=False bbam=False, {'v': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22e6d70>)>} ... ok
intersect, a=filename, b=stream abam=False bbam=False, {'v': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
intersect, a=filename, b=gzip abam=False bbam=False, {'v': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.xyyptu4k.tmp)>} ... ok
intersect, a=generator, b=filename abam=False bbam=False, {'v': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
intersect, a=generator, b=stream abam=False bbam=False, {'v': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
intersect, a=generator, b=gzip abam=False bbam=False, {'v': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.ynvkjl8g.tmp)>} ... ok
intersect, a=stream, b=filename abam=False bbam=False, {'v': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
intersect, a=stream, b=generator abam=False bbam=False, {'v': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22e6e30>)>} ... ok
intersect, a=stream, b=gzip abam=False bbam=False, {'v': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.ovu4o8ye.tmp)>} ... ok
intersect, a=gzip, b=filename abam=False bbam=False, {'v': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
intersect, a=gzip, b=generator abam=False bbam=False, {'v': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22e6e70>)>} ... ok
intersect, a=gzip, b=stream abam=False bbam=False, {'v': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
intersect, a=filename, b=generator abam=False bbam=False, {'v': True, 's': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22e6ef0>)>} ... ok
intersect, a=filename, b=stream abam=False bbam=False, {'v': True, 's': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
intersect, a=filename, b=gzip abam=False bbam=False, {'v': True, 's': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.cn0diuv8.tmp)>} ... ok
intersect, a=generator, b=filename abam=False bbam=False, {'v': True, 's': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
intersect, a=generator, b=stream abam=False bbam=False, {'v': True, 's': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
intersect, a=generator, b=gzip abam=False bbam=False, {'v': True, 's': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.ex9zaukd.tmp)>} ... ok
intersect, a=stream, b=filename abam=False bbam=False, {'v': True, 's': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
intersect, a=stream, b=generator abam=False bbam=False, {'v': True, 's': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22e6fb0>)>} ... ok
intersect, a=stream, b=gzip abam=False bbam=False, {'v': True, 's': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.bor324bl.tmp)>} ... ok
intersect, a=gzip, b=filename abam=False bbam=False, {'v': True, 's': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
intersect, a=gzip, b=generator abam=False bbam=False, {'v': True, 's': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225b030>)>} ... ok
intersect, a=gzip, b=stream abam=False bbam=False, {'v': True, 's': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
intersect, a=filename, b=generator abam=True bbam=False, {'abam': '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.bam', 'bed': True, 'v': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225b0b0>)>} ... ok
intersect, a=filename, b=stream abam=True bbam=False, {'abam': '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.bam', 'bed': True, 'v': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.gff' mode='r' encoding='UTF-8'>)>} ... ok
intersect, a=filename, b=gzip abam=True bbam=False, {'abam': '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.bam', 'bed': True, 'v': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.4299a764.tmp)>} ... ok
intersect, a=filename, b=generator abam=True bbam=False, {'abam': '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.bam', 'bed': True, 'u': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225b1b0>)>} ... ok
intersect, a=filename, b=stream abam=True bbam=False, {'abam': '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.bam', 'bed': True, 'u': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.gff' mode='r' encoding='UTF-8'>)>} ... ok
intersect, a=filename, b=gzip abam=True bbam=False, {'abam': '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.bam', 'bed': True, 'u': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.zc1gb6ao.tmp)>} ... ok
intersect, a=filename, b=generator abam=True bbam=False, {'bed': True, 'u': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225b170>)>} ... ok
intersect, a=filename, b=stream abam=True bbam=False, {'bed': True, 'u': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.gff' mode='r' encoding='UTF-8'>)>} ... ok
intersect, a=filename, b=gzip abam=True bbam=False, {'bed': True, 'u': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.axfx09xe.tmp)>} ... ok
subtract, a=filename, b=generator abam=False bbam=False, {'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225b1f0>)>} ... ok
subtract, a=filename, b=stream abam=False bbam=False, {'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
subtract, a=filename, b=gzip abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.2rljt2pl.tmp)>} ... ok
subtract, a=generator, b=filename abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
subtract, a=generator, b=stream abam=False bbam=False, {'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
subtract, a=generator, b=gzip abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.b3il1q42.tmp)>} ... ok
subtract, a=stream, b=filename abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
subtract, a=stream, b=generator abam=False bbam=False, {'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225b2b0>)>} ... ok
subtract, a=stream, b=gzip abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.c9l53c11.tmp)>} ... ok
subtract, a=gzip, b=filename abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
subtract, a=gzip, b=generator abam=False bbam=False, {'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225b2f0>)>} ... ok
subtract, a=gzip, b=stream abam=False bbam=False, {'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
subtract, a=filename, b=generator abam=False bbam=False, {'s': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225b370>)>} ... ok
subtract, a=filename, b=stream abam=False bbam=False, {'s': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
subtract, a=filename, b=gzip abam=False bbam=False, {'s': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.g9yw_900.tmp)>} ... ok
subtract, a=generator, b=filename abam=False bbam=False, {'s': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
subtract, a=generator, b=stream abam=False bbam=False, {'s': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
subtract, a=generator, b=gzip abam=False bbam=False, {'s': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.vftywn5u.tmp)>} ... ok
subtract, a=stream, b=filename abam=False bbam=False, {'s': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
subtract, a=stream, b=generator abam=False bbam=False, {'s': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225b430>)>} ... ok
subtract, a=stream, b=gzip abam=False bbam=False, {'s': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.v9v29bqs.tmp)>} ... ok
subtract, a=gzip, b=filename abam=False bbam=False, {'s': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
subtract, a=gzip, b=generator abam=False bbam=False, {'s': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225b470>)>} ... ok
subtract, a=gzip, b=stream abam=False bbam=False, {'s': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
subtract, a=filename, b=generator abam=False bbam=False, {'s': True, 'f': 0.13, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225b4f0>)>} ... ok
subtract, a=filename, b=stream abam=False bbam=False, {'s': True, 'f': 0.13, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
subtract, a=filename, b=gzip abam=False bbam=False, {'s': True, 'f': 0.13, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.zwuyoxp_.tmp)>} ... ok
subtract, a=generator, b=filename abam=False bbam=False, {'s': True, 'f': 0.13, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
subtract, a=generator, b=stream abam=False bbam=False, {'s': True, 'f': 0.13, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
subtract, a=generator, b=gzip abam=False bbam=False, {'s': True, 'f': 0.13, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.f_yv3a45.tmp)>} ... ok
subtract, a=stream, b=filename abam=False bbam=False, {'s': True, 'f': 0.13, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
subtract, a=stream, b=generator abam=False bbam=False, {'s': True, 'f': 0.13, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225b5b0>)>} ... ok
subtract, a=stream, b=gzip abam=False bbam=False, {'s': True, 'f': 0.13, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.ptg3cwe7.tmp)>} ... ok
subtract, a=gzip, b=filename abam=False bbam=False, {'s': True, 'f': 0.13, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
subtract, a=gzip, b=generator abam=False bbam=False, {'s': True, 'f': 0.13, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225b5f0>)>} ... ok
subtract, a=gzip, b=stream abam=False bbam=False, {'s': True, 'f': 0.13, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
subtract, a=filename, b=generator abam=False bbam=False, {'s': True, 'f': 0.1, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225b670>)>} ... ok
subtract, a=filename, b=stream abam=False bbam=False, {'s': True, 'f': 0.1, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
subtract, a=filename, b=gzip abam=False bbam=False, {'s': True, 'f': 0.1, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.11xiuqjg.tmp)>} ... ok
subtract, a=generator, b=filename abam=False bbam=False, {'s': True, 'f': 0.1, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
subtract, a=generator, b=stream abam=False bbam=False, {'s': True, 'f': 0.1, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
subtract, a=generator, b=gzip abam=False bbam=False, {'s': True, 'f': 0.1, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.7vywzhhh.tmp)>} ... ok
subtract, a=stream, b=filename abam=False bbam=False, {'s': True, 'f': 0.1, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
subtract, a=stream, b=generator abam=False bbam=False, {'s': True, 'f': 0.1, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225b730>)>} ... ok
subtract, a=stream, b=gzip abam=False bbam=False, {'s': True, 'f': 0.1, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.uuhmhgwl.tmp)>} ... ok
subtract, a=gzip, b=filename abam=False bbam=False, {'s': True, 'f': 0.1, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
subtract, a=gzip, b=generator abam=False bbam=False, {'s': True, 'f': 0.1, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225b770>)>} ... ok
subtract, a=gzip, b=stream abam=False bbam=False, {'s': True, 'f': 0.1, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
coverage, a=filename, b=generator abam=False bbam=False, {'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225b7f0>)>} ... ok
coverage, a=filename, b=stream abam=False bbam=False, {'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/a.bed' mode='r' encoding='UTF-8'>)>} ... ok
coverage, a=filename, b=gzip abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.s189bf91.tmp)>} ... ok
coverage, a=generator, b=filename abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/a.bed)>} ... ok
coverage, a=generator, b=stream abam=False bbam=False, {'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/a.bed' mode='r' encoding='UTF-8'>)>} ... ok
coverage, a=generator, b=gzip abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.u1zx883e.tmp)>} ... ok
coverage, a=stream, b=filename abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/a.bed)>} ... ok
coverage, a=stream, b=generator abam=False bbam=False, {'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225b8b0>)>} ... ok
coverage, a=stream, b=gzip abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.4pn9lec3.tmp)>} ... ok
coverage, a=gzip, b=filename abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/a.bed)>} ... ok
coverage, a=gzip, b=generator abam=False bbam=False, {'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225b8f0>)>} ... ok
coverage, a=gzip, b=stream abam=False bbam=False, {'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/a.bed' mode='r' encoding='UTF-8'>)>} ... ok
closest, a=filename, b=generator abam=False bbam=False, {'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225b970>)>} ... ok
closest, a=filename, b=stream abam=False bbam=False, {'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
closest, a=filename, b=gzip abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.y_9xgmzt.tmp)>} ... ok
closest, a=generator, b=filename abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
closest, a=generator, b=stream abam=False bbam=False, {'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
closest, a=generator, b=gzip abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.bc9qk9_s.tmp)>} ... ok
closest, a=stream, b=filename abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
closest, a=stream, b=generator abam=False bbam=False, {'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225ba30>)>} ... ok
closest, a=stream, b=gzip abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.5tieiisu.tmp)>} ... ok
closest, a=gzip, b=filename abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
closest, a=gzip, b=generator abam=False bbam=False, {'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225ba70>)>} ... ok
closest, a=gzip, b=stream abam=False bbam=False, {'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
window, a=filename, b=generator abam=False bbam=False, {'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225baf0>)>} ... ok
window, a=filename, b=stream abam=False bbam=False, {'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
window, a=filename, b=gzip abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.emwst4il.tmp)>} ... ok
window, a=generator, b=filename abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
window, a=generator, b=stream abam=False bbam=False, {'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
window, a=generator, b=gzip abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.rbh4v0z6.tmp)>} ... ok
window, a=stream, b=filename abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
window, a=stream, b=generator abam=False bbam=False, {'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225bbb0>)>} ... ok
window, a=stream, b=gzip abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.7h8qzh29.tmp)>} ... ok
window, a=gzip, b=filename abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
window, a=gzip, b=generator abam=False bbam=False, {'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225bbf0>)>} ... ok
window, a=gzip, b=stream abam=False bbam=False, {'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
window, a=filename, b=generator abam=False bbam=False, {'Sm': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225bc70>)>} ... ok
window, a=filename, b=stream abam=False bbam=False, {'Sm': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
window, a=filename, b=gzip abam=False bbam=False, {'Sm': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools._waz0toq.tmp)>} ... ok
window, a=generator, b=filename abam=False bbam=False, {'Sm': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
window, a=generator, b=stream abam=False bbam=False, {'Sm': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
window, a=generator, b=gzip abam=False bbam=False, {'Sm': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.qsmleiyg.tmp)>} ... ok
window, a=stream, b=filename abam=False bbam=False, {'Sm': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
window, a=stream, b=generator abam=False bbam=False, {'Sm': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225bd30>)>} ... ok
window, a=stream, b=gzip abam=False bbam=False, {'Sm': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.axyx2bm3.tmp)>} ... ok
window, a=gzip, b=filename abam=False bbam=False, {'Sm': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
window, a=gzip, b=generator abam=False bbam=False, {'Sm': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225bd70>)>} ... ok
window, a=gzip, b=stream abam=False bbam=False, {'Sm': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
window, a=filename, b=generator abam=False bbam=False, {'sm': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225bdf0>)>} ... ok
window, a=filename, b=stream abam=False bbam=False, {'sm': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
window, a=filename, b=gzip abam=False bbam=False, {'sm': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.eqjn4jn4.tmp)>} ... ok
window, a=generator, b=filename abam=False bbam=False, {'sm': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
window, a=generator, b=stream abam=False bbam=False, {'sm': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
window, a=generator, b=gzip abam=False bbam=False, {'sm': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools._z6hwz7j.tmp)>} ... ok
window, a=stream, b=filename abam=False bbam=False, {'sm': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
window, a=stream, b=generator abam=False bbam=False, {'sm': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225beb0>)>} ... ok
window, a=stream, b=gzip abam=False bbam=False, {'sm': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.nynzpse4.tmp)>} ... ok
window, a=gzip, b=filename abam=False bbam=False, {'sm': True, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
window, a=gzip, b=generator abam=False bbam=False, {'sm': True, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225bef0>)>} ... ok
window, a=gzip, b=stream abam=False bbam=False, {'sm': True, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
map, a=filename, b=generator abam=False bbam=False, {'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb225bf70>)>} ... ok
map, a=filename, b=stream abam=False bbam=False, {'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/d.gff' mode='r' encoding='UTF-8'>)>} ... ok
map, a=filename, b=gzip abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.1soxwqnf.tmp)>} ... ok
map, a=generator, b=filename abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/d.gff)>} ... ok
map, a=generator, b=stream abam=False bbam=False, {'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/d.gff' mode='r' encoding='UTF-8'>)>} ... ok
map, a=generator, b=gzip abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.jiiw_53y.tmp)>} ... ok
map, a=stream, b=filename abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/d.gff)>} ... ok
map, a=stream, b=generator abam=False bbam=False, {'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb2224070>)>} ... ok
map, a=stream, b=gzip abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.nc8ck9pa.tmp)>} ... ok
map, a=gzip, b=filename abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/d.gff)>} ... ok
map, a=gzip, b=generator abam=False bbam=False, {'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22240b0>)>} ... ok
map, a=gzip, b=stream abam=False bbam=False, {'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/d.gff' mode='r' encoding='UTF-8'>)>} ... ok
map, a=filename, b=generator abam=False bbam=False, {'o': 'collapse', 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb2224130>)>} ... ok
map, a=filename, b=stream abam=False bbam=False, {'o': 'collapse', 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/d.gff' mode='r' encoding='UTF-8'>)>} ... ok
map, a=filename, b=gzip abam=False bbam=False, {'o': 'collapse', 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.dzxj16nx.tmp)>} ... ok
map, a=generator, b=filename abam=False bbam=False, {'o': 'collapse', 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/d.gff)>} ... ok
map, a=generator, b=stream abam=False bbam=False, {'o': 'collapse', 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/d.gff' mode='r' encoding='UTF-8'>)>} ... ok
map, a=generator, b=gzip abam=False bbam=False, {'o': 'collapse', 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.3g4_0r9n.tmp)>} ... ok
map, a=stream, b=filename abam=False bbam=False, {'o': 'collapse', 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/d.gff)>} ... ok
map, a=stream, b=generator abam=False bbam=False, {'o': 'collapse', 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22241b0>)>} ... ok
map, a=stream, b=gzip abam=False bbam=False, {'o': 'collapse', 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.ip5htk2p.tmp)>} ... ok
map, a=gzip, b=filename abam=False bbam=False, {'o': 'collapse', 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/d.gff)>} ... ok
map, a=gzip, b=generator abam=False bbam=False, {'o': 'collapse', 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22242b0>)>} ... ok
map, a=gzip, b=stream abam=False bbam=False, {'o': 'collapse', 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/d.gff' mode='r' encoding='UTF-8'>)>} ... ok
map, a=filename, b=generator abam=False bbam=False, {'o': 'collapse', 'c': 3, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb2224330>)>} ... ok
map, a=filename, b=stream abam=False bbam=False, {'o': 'collapse', 'c': 3, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/d.gff' mode='r' encoding='UTF-8'>)>} ... ok
map, a=filename, b=gzip abam=False bbam=False, {'o': 'collapse', 'c': 3, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.vufx6xua.tmp)>} ... ok
map, a=generator, b=filename abam=False bbam=False, {'o': 'collapse', 'c': 3, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/d.gff)>} ... ok
map, a=generator, b=stream abam=False bbam=False, {'o': 'collapse', 'c': 3, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/d.gff' mode='r' encoding='UTF-8'>)>} ... ok
map, a=generator, b=gzip abam=False bbam=False, {'o': 'collapse', 'c': 3, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.exu5rim2.tmp)>} ... ok
map, a=stream, b=filename abam=False bbam=False, {'o': 'collapse', 'c': 3, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/d.gff)>} ... ok
map, a=stream, b=generator abam=False bbam=False, {'o': 'collapse', 'c': 3, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22243b0>)>} ... ok
map, a=stream, b=gzip abam=False bbam=False, {'o': 'collapse', 'c': 3, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.ptwou5e5.tmp)>} ... ok
map, a=gzip, b=filename abam=False bbam=False, {'o': 'collapse', 'c': 3, 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/d.gff)>} ... ok
map, a=gzip, b=generator abam=False bbam=False, {'o': 'collapse', 'c': 3, 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb2224230>)>} ... ok
map, a=gzip, b=stream abam=False bbam=False, {'o': 'collapse', 'c': 3, 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/d.gff' mode='r' encoding='UTF-8'>)>} ... ok
pair_to_pair, a=filename, b=generator abam=False bbam=False, {'type': 'either', 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22243f0>)>} ... ok
pair_to_pair, a=filename, b=stream abam=False bbam=False, {'type': 'either', 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/bedpe2.bed' mode='r' encoding='UTF-8'>)>} ... ok
pair_to_pair, a=filename, b=gzip abam=False bbam=False, {'type': 'either', 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.8p2ol7ms.tmp)>} ... ok
pair_to_pair, a=generator, b=filename abam=False bbam=False, {'type': 'either', 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/bedpe2.bed)>} ... ok
pair_to_pair, a=generator, b=stream abam=False bbam=False, {'type': 'either', 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/bedpe2.bed' mode='r' encoding='UTF-8'>)>} ... ok
pair_to_pair, a=generator, b=gzip abam=False bbam=False, {'type': 'either', 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.cgo8mu1v.tmp)>} ... ok
pair_to_pair, a=stream, b=filename abam=False bbam=False, {'type': 'either', 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/bedpe2.bed)>} ... ok
pair_to_pair, a=stream, b=generator abam=False bbam=False, {'type': 'either', 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22244f0>)>} ... ok
pair_to_pair, a=stream, b=gzip abam=False bbam=False, {'type': 'either', 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.vvmr4m1u.tmp)>} ... ok
pair_to_pair, a=gzip, b=filename abam=False bbam=False, {'type': 'either', 'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/bedpe2.bed)>} ... ok
pair_to_pair, a=gzip, b=generator abam=False bbam=False, {'type': 'either', 'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb2224530>)>} ... ok
pair_to_pair, a=gzip, b=stream abam=False bbam=False, {'type': 'either', 'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/bedpe2.bed' mode='r' encoding='UTF-8'>)>} ... ok
pair_to_bed, a=filename, b=generator abam=False bbam=False, {'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22245b0>)>} ... ok
pair_to_bed, a=filename, b=stream abam=False bbam=False, {'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
pair_to_bed, a=filename, b=gzip abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.56p8vet5.tmp)>} ... ok
pair_to_bed, a=generator, b=filename abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
pair_to_bed, a=generator, b=stream abam=False bbam=False, {'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
pair_to_bed, a=generator, b=gzip abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.l741nqve.tmp)>} ... ok
pair_to_bed, a=stream, b=filename abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
pair_to_bed, a=stream, b=generator abam=False bbam=False, {'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22246b0>)>} ... ok
pair_to_bed, a=stream, b=gzip abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools._6wedzms.tmp)>} ... ok
pair_to_bed, a=gzip, b=filename abam=False bbam=False, {'b': <BedTool(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed)>} ... ok
pair_to_bed, a=gzip, b=generator abam=False bbam=False, {'b': <BedTool(<generator object <lambda>.<locals>.<genexpr> at 0xb22245f0>)>} ... ok
pair_to_bed, a=gzip, b=stream abam=False bbam=False, {'b': <BedTool(<_io.TextIOWrapper name='/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed' mode='r' encoding='UTF-8'>)>} ... ok
slop, i=filename ibam=False, {'b': 100, 'genome': 'hg19'} ... ok
slop, i=generator ibam=False, {'b': 100, 'genome': 'hg19'} ... ok
slop, i=stream ibam=False, {'b': 100, 'genome': 'hg19'} ... ok
slop, i=gzip ibam=False, {'b': 100, 'genome': 'hg19'} ... ok
slop, i=filename ibam=False, {'l': 100, 'r': 1, 'genome': 'hg19'} ... ok
slop, i=generator ibam=False, {'l': 100, 'r': 1, 'genome': 'hg19'} ... ok
slop, i=stream ibam=False, {'l': 100, 'r': 1, 'genome': 'hg19'} ... ok
slop, i=gzip ibam=False, {'l': 100, 'r': 1, 'genome': 'hg19'} ... ok
merge, i=filename ibam=False, {} ... ok
merge, i=generator ibam=False, {} ... ok
merge, i=stream ibam=False, {} ... ok
merge, i=gzip ibam=False, {} ... ok
merge, i=filename ibam=False, {'s': True} ... ok
merge, i=generator ibam=False, {'s': True} ... ok
merge, i=stream ibam=False, {'s': True} ... ok
merge, i=gzip ibam=False, {'s': True} ... ok
merge, i=filename ibam=False, {'s': True, 'c': [4, 5, 6], 'o': 'distinct'} ... ok
merge, i=generator ibam=False, {'s': True, 'c': [4, 5, 6], 'o': 'distinct'} ... ok
merge, i=stream ibam=False, {'s': True, 'c': [4, 5, 6], 'o': 'distinct'} ... ok
merge, i=gzip ibam=False, {'s': True, 'c': [4, 5, 6], 'o': 'distinct'} ... ok
merge, i=filename ibam=False, {'d': 700} ... ok
merge, i=generator ibam=False, {'d': 700} ... ok
merge, i=stream ibam=False, {'d': 700} ... ok
merge, i=gzip ibam=False, {'d': 700} ... ok
bam_to_bed, i=filename ibam=True, {} ... ok
bed6, i=filename ibam=False, {} ... ok
bed6, i=generator ibam=False, {} ... ok
bed6, i=stream ibam=False, {} ... ok
bed6, i=gzip ibam=False, {} ... ok
shuffle, i=filename ibam=False, {'seed': 1, 'genome': 'hg19', 'chrom': True} ... ok
shuffle, i=generator ibam=False, {'seed': 1, 'genome': 'hg19', 'chrom': True} ... ok
shuffle, i=stream ibam=False, {'seed': 1, 'genome': 'hg19', 'chrom': True} ... ok
shuffle, i=gzip ibam=False, {'seed': 1, 'genome': 'hg19', 'chrom': True} ... ok
annotate, i=filename ibam=False, {'files': ['/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed', '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/a.bed']} ... ok
annotate, i=generator ibam=False, {'files': ['/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed', '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/a.bed']} ... ok
annotate, i=stream ibam=False, {'files': ['/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed', '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/a.bed']} ... ok
annotate, i=gzip ibam=False, {'files': ['/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed', '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/a.bed']} ... ok
flank, i=filename ibam=False, {'b': 100, 'genome': 'hg19'} ... ok
flank, i=generator ibam=False, {'b': 100, 'genome': 'hg19'} ... ok
flank, i=stream ibam=False, {'b': 100, 'genome': 'hg19'} ... ok
flank, i=gzip ibam=False, {'b': 100, 'genome': 'hg19'} ... ok
genome_coverage, i=filename ibam=True, {'ibam': '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.bam', 'bg': True} ... ok
genome_coverage, i=filename ibam=True, {'bg': True} ... ok
genome_coverage, i=filename ibam=True, {'genome': 'dm3', 'bg': True} ... ok
genome_coverage, i=filename ibam=True, {'ibam': '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.bam', 'genome': 'dm3', 'bg': True} ... ok
genome_coverage, i=filename ibam=False, {'genome': 'dm3', 'bg': True} ... ok
genome_coverage, i=generator ibam=False, {'genome': 'dm3', 'bg': True} ... ok
genome_coverage, i=stream ibam=False, {'genome': 'dm3', 'bg': True} ... ok
genome_coverage, i=gzip ibam=False, {'genome': 'dm3', 'bg': True} ... ok
tag_bam, i=filename ibam=True, {'files': ['/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/tag_test1.bed', '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/tag_test2.bed'], 'labels': ['1', '2']} ... ok
tag_bam, i=filename ibam=True, {'files': ['/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/tag_test1.bed', '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/tag_test2.bed'], 'labels': ['1', '2'], 's': True} ... ok
cluster, i=filename ibam=False, {} ... ok
cluster, i=generator ibam=False, {} ... ok
cluster, i=stream ibam=False, {} ... ok
cluster, i=gzip ibam=False, {} ... ok
cluster, i=filename ibam=False, {'d': -10} ... ok
cluster, i=generator ibam=False, {'d': -10} ... ok
cluster, i=stream ibam=False, {'d': -10} ... ok
cluster, i=gzip ibam=False, {'d': -10} ... ok
bedpe_to_bam, i=filename ibam=False, {'genome': 'hg19'} ... ok
bedpe_to_bam, i=generator ibam=False, {'genome': 'hg19'} ... ok
bedpe_to_bam, i=stream ibam=False, {'genome': 'hg19'} ... ok
bedpe_to_bam, i=gzip ibam=False, {'genome': 'hg19'} ... ok
expand, i=filename ibam=False, {'c': 5} ... ok
expand, i=generator ibam=False, {'c': 5} ... ok
expand, i=stream ibam=False, {'c': 5} ... ok
expand, i=gzip ibam=False, {'c': 5} ... ok
sample, i=filename ibam=False, {'seed': 1, 'n': 2} ... FAIL
sample, i=generator ibam=False, {'seed': 1, 'n': 2} ... FAIL
sample, i=stream ibam=False, {'seed': 1, 'n': 2} ... FAIL
sample, i=gzip ibam=False, {'seed': 1, 'n': 2} ... FAIL
nucleotide_content, i=filename, {'fi': '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/test.fa'} ... ok
nucleotide_content, i=generator, {'fi': '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/test.fa'} ... ok
nucleotide_content, i=stream, {'fi': '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/test.fa'} ... ok
nucleotide_content, i=gzip, {'fi': '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/test.fa'} ... ok
multi_bam_coverage, i=filename, {'bams': ['/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.1.100.bam', '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.50.200.bam']} ... ok
multi_bam_coverage, i=generator, {'bams': ['/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.1.100.bam', '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.50.200.bam']} ... ok
multi_bam_coverage, i=stream, {'bams': ['/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.1.100.bam', '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.50.200.bam']} ... ok
multi_bam_coverage, i=gzip, {'bams': ['/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.1.100.bam', '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.50.200.bam']} ... ok
pybedtools.test.test_scripts.test_annotate_main ... ok
pybedtools.test.test_scripts.test_annotate_closest ... ok
pybedtools.test.test_scripts.test_annotate_xstream ... ok
compares output image to expected ... ok
pybedtools.test.test_scripts.test_venn_gchart_data_is_correct ... ok
pybedtools.test.test_scripts.test_venn_gchart_png_is_saved_correctly ... SKIP: Small differences between fonts in PNG are sometimes produced and need to be accounted for
pybedtools.test.test_scripts.test_venn_mpl_main ... ok
pybedtools.test.test_scripts.test_venn_gchart_main ... ok

======================================================================
FAIL: pybedtools.test.test1.test_randomstats
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test1.py", line 796, in test_randomstats
    assert results['percentile'] == 89.5
AssertionError

======================================================================
FAIL: pybedtools.test.test1.test_random
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test1.py", line 1396, in test_random
    """)
AssertionError

======================================================================
FAIL: pybedtools.test.test1.test_reldist
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test1.py", line 1461, in test_reldist
    assert results == {'reldist': [0.15, 0.21, 0.28], 'count': [1, 1, 1], 'total': [3, 3, 3], 'fraction': [0.333, 0.333, 0.333]}, results
AssertionError: {'reldist': [0.16, 0.2, 0.21], 'count': [1, 1, 1], 'total': [3, 3, 3], 'fraction': [0.333, 0.333, 0.333]}

======================================================================
FAIL: pybedtools.test.test1.test_to_dataframe
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test1.py", line 1656, in test_to_dataframe
    assert results == expected
AssertionError

======================================================================
FAIL: sample, i=filename ibam=False, {'seed': 1, 'n': 2}
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_iter.py", line 68, in run
    assert res == expected
AssertionError: 
-------------------- >> begin captured stdout << ---------------------
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.c_ab7pqq.tmp
Method call:
BedTool.sample(seed=1, n=2)
Got:
chr2L	70	75	None	255	+
chr2L	70	75	None	255	-

Expected:
chr2L	140	145	None	255	-
chr2L	70	75	None	255	-

Diff:
--- 
 +++ 
 @@ -1,2 +1,2 @@
 -chr2L	70	75	None	255	+
 +chr2L	140	145	None	255	-
  chr2L	70	75	None	255	-
 Showing special characters:
Got:
chr2L\t70\t75\tNone\t255\t+\n
chr2L\t70\t75\tNone\t255\t-\n

Expected:
chr2L\t140\t145\tNone\t255\t-\n
chr2L\t70\t75\tNone\t255\t-\n

Diff:
--- 
 +++ 
 @@ -1,2 +1,2 @@
 -chr2L\t70\t75\tNone\t255\t+\n
 +chr2L\t140\t145\tNone\t255\t-\n
  chr2L\t70\t75\tNone\t255\t-\n
 
--------------------- >> end captured stdout << ----------------------

======================================================================
FAIL: sample, i=generator ibam=False, {'seed': 1, 'n': 2}
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_iter.py", line 68, in run
    assert res == expected
AssertionError: 
-------------------- >> begin captured stdout << ---------------------
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.grx8a9c9.tmp
Method call:
BedTool.sample(seed=1, n=2)
Got:
chr2L	70	75	None	255	+
chr2L	70	75	None	255	-

Expected:
chr2L	140	145	None	255	-
chr2L	70	75	None	255	-

Diff:
--- 
 +++ 
 @@ -1,2 +1,2 @@
 -chr2L	70	75	None	255	+
 +chr2L	140	145	None	255	-
  chr2L	70	75	None	255	-
 Showing special characters:
Got:
chr2L\t70\t75\tNone\t255\t+\n
chr2L\t70\t75\tNone\t255\t-\n

Expected:
chr2L\t140\t145\tNone\t255\t-\n
chr2L\t70\t75\tNone\t255\t-\n

Diff:
--- 
 +++ 
 @@ -1,2 +1,2 @@
 -chr2L\t70\t75\tNone\t255\t+\n
 +chr2L\t140\t145\tNone\t255\t-\n
  chr2L\t70\t75\tNone\t255\t-\n
 
--------------------- >> end captured stdout << ----------------------

======================================================================
FAIL: sample, i=stream ibam=False, {'seed': 1, 'n': 2}
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_iter.py", line 68, in run
    assert res == expected
AssertionError: 
-------------------- >> begin captured stdout << ---------------------
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.08xa6xd4.tmp
Method call:
BedTool.sample(seed=1, n=2)
Got:
chr2L	70	75	None	255	+
chr2L	70	75	None	255	-

Expected:
chr2L	140	145	None	255	-
chr2L	70	75	None	255	-

Diff:
--- 
 +++ 
 @@ -1,2 +1,2 @@
 -chr2L	70	75	None	255	+
 +chr2L	140	145	None	255	-
  chr2L	70	75	None	255	-
 Showing special characters:
Got:
chr2L\t70\t75\tNone\t255\t+\n
chr2L\t70\t75\tNone\t255\t-\n

Expected:
chr2L\t140\t145\tNone\t255\t-\n
chr2L\t70\t75\tNone\t255\t-\n

Diff:
--- 
 +++ 
 @@ -1,2 +1,2 @@
 -chr2L\t70\t75\tNone\t255\t+\n
 +chr2L\t140\t145\tNone\t255\t-\n
  chr2L\t70\t75\tNone\t255\t-\n
 
--------------------- >> end captured stdout << ----------------------

======================================================================
FAIL: sample, i=gzip ibam=False, {'seed': 1, 'n': 2}
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_iter.py", line 68, in run
    assert res == expected
AssertionError: 
-------------------- >> begin captured stdout << ---------------------
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tmp/pybedtools.pldhigpo.tmp
Method call:
BedTool.sample(seed=1, n=2)
Got:
chr2L	70	75	None	255	+
chr2L	70	75	None	255	-

Expected:
chr2L	140	145	None	255	-
chr2L	70	75	None	255	-

Diff:
--- 
 +++ 
 @@ -1,2 +1,2 @@
 -chr2L	70	75	None	255	+
 +chr2L	140	145	None	255	-
  chr2L	70	75	None	255	-
 Showing special characters:
Got:
chr2L\t70\t75\tNone\t255\t+\n
chr2L\t70\t75\tNone\t255\t-\n

Expected:
chr2L\t140\t145\tNone\t255\t-\n
chr2L\t70\t75\tNone\t255\t-\n

Diff:
--- 
 +++ 
 @@ -1,2 +1,2 @@
 -chr2L\t70\t75\tNone\t255\t+\n
 +chr2L\t140\t145\tNone\t255\t-\n
  chr2L\t70\t75\tNone\t255\t-\n
 
--------------------- >> end captured stdout << ----------------------

----------------------------------------------------------------------
Ran 491 tests in 130.974s

FAILED (SKIP=1, failures=8)
E: pybuild pybuild:338: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pybedtools/build; python3.7 -m nose -v --attr '!url' 
dh_auto_test: pybuild --test --test-nose -i python{version} -p 3.7 returned exit code 13
make: *** [debian/rules:14: build-arch] Error 25
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2019-01-20T00:41:21Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 0
Build-Time: 824
Distribution: buster-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 1604
Job: python-pybedtools_0.7.10-2
Machine Architecture: armhf
Package: python-pybedtools
Package-Time: 2491
Source-Version: 0.7.10-2
Space: 0
Status: failed
Version: 0.7.10-2
--------------------------------------------------------------------------------
Finished at 2019-01-20T00:41:21Z
Build needed 00:00:00, 0k disc space

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