python-pyani →
0.2.12-3 →
armhf → 2023-11-27 09:06:40
sbuild (Debian sbuild) 0.85.0 (04 January 2023) on test2023
+==============================================================================+
| python-pyani 0.2.12-3 (armhf) Mon, 27 Nov 2023 09:00:35 +0000 |
+==============================================================================+
Package: python-pyani
Version: 0.2.12-3
Source Version: 0.2.12-3
Distribution: trixie-staging
Machine Architecture: arm64
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-611a4882-f539-485e-8529-03f4add64d78' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/python-pyani-RNibCX/resolver-BwQN5H' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.3 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [14.9 MB]
Fetched 29.2 MB in 5s (5461 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-pyani' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-pyani.git
Please use:
git clone https://salsa.debian.org/med-team/python-pyani.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 49.1 MB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main python-pyani 0.2.12-3 (dsc) [2404 B]
Get:2 http://172.17.4.1/private trixie-staging/main python-pyani 0.2.12-3 (tar) [49.0 MB]
Get:3 http://172.17.4.1/private trixie-staging/main python-pyani 0.2.12-3 (diff) [11.4 kB]
Fetched 49.1 MB in 6s (8625 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-pyani-RNibCX/python-pyani-0.2.12' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-pyani-RNibCX' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, python3-biopython, python3-matplotlib, python3-pandas, python3-scipy, python3-seaborn, mummer, ncbi-blast+, python3-pytest, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, python3-biopython, python3-matplotlib, python3-pandas, python3-scipy, python3-seaborn, mummer, ncbi-blast+, python3-pytest, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [887 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [831 B]
Fetched 2327 B in 0s (0 B/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev blt bsdextrautils bsdutils
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dpkg-dev dwz file
fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono
fonts-lyx fonts-urw-base35 gawk gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libblas3 libblkid1 libbrotli1 libbsd0
libcairo2 libdebhelper-perl libdeflate0 libdpkg-perl libelf1 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfontenc1
libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3
libharfbuzz0b libicu72 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery
libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0
liblcms2-2 liblerc4 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto7
libmbedtls14 libmbedx509-1 libmount1 libopenjp2-7 libpipeline1 libpixman-1-0
libpng16-16 libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib
libqhull-r8.0 libraqm0 libsharpyuv0 libsigsegv2 libsmartcols1
libsub-override-perl libtcl8.6 libtiff6 libtk8.6 libtool libuchardet0
libuuid1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxrender1 libxslt1.1 libxss1 m4 mailcap man-db media-types mime-support
mount mummer ncbi-blast+ ncbi-data po-debconf python-matplotlib-data python3
python3-all python3-all-dev python3-appdirs python3-attr python3-biopython
python3-brotli python3-cairo python3-contourpy python3-cycler
python3-dateutil python3-decorator python3-dev python3-distutils
python3-fonttools python3-freetype python3-fs python3-iniconfig
python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4
python3-matplotlib python3-minimal python3-mpmath python3-numpy
python3-packaging python3-pandas python3-pandas-lib python3-pil
python3-pil.imagetk python3-pkg-resources python3-pluggy python3-pyparsing
python3-pytest python3-reportlab python3-rlpycairo python3-scipy
python3-seaborn python3-setuptools python3-six python3-sympy python3-tk
python3-tz python3-ufolib2 python3.11 python3.11-dev python3.11-minimal
sensible-utils sgml-base tk8.6-blt2.5 unicode-data util-linux w3c-sgml-lib
x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc blt-demo dh-make flit
python3-build python3-installer python3-wheel debian-keyring
fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gawk-doc gettext-doc
libasprintf-dev libgettextpo-dev groff git bzr low-memory-monitor
libjs-jquery-ui-docs liblcms2-utils cryptsetup-bin tcl8.6 tk8.6 libtool-doc
gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
nfs-common libmail-box-perl python3-doc python3-venv python-attr-doc bwa
clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml
prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2
raxml samtools t-coffee wise python-cycler-doc python-lxml-doc
cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0
inkscape ipython3 librsvg2-common python3-cairocffi python3-gi
python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado
texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2
gfortran python-pandas-doc python3-statsmodels python-pil-doc
python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools
python-reportlab-doc python-scipy-doc python-setuptools-doc
texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.11-venv
python3.11-doc binfmt-support sgml-base-doc dosfstools kbd util-linux-extra
util-linux-locales
Recommended packages:
libalgorithm-merge-perl curl | wget | lynx libfile-fcntllock-perl
libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs
javascript-common libltdl-dev uuid-runtime libmail-sendmail-perl
python-biopython-doc python3-bs4 python3-html5lib python3-bottleneck
python3-numexpr python3-odf python3-openpyxl python3-tables python3-jinja2
python3-olefile python3-pygments python3-patsy isympy-common ca-certificates
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev blt bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config
fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-lyx
fonts-urw-base35 gawk gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcairo2 libdebhelper-perl
libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgfortran5
libglib2.0-0 libgraphite2-3 libharfbuzz0b libicu72 libimagequant0 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc
libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblmdb0
libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1
libopenjp2-7 libpipeline1 libpixman-1-0 libpng16-16 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev
libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libraqm0
libsharpyuv0 libsigsegv2 libsub-override-perl libtcl8.6 libtiff6 libtk8.6
libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxrender1 libxslt1.1 libxss1 m4 mailcap man-db media-types
mime-support mummer ncbi-blast+ ncbi-data po-debconf python-matplotlib-data
python3 python3-all python3-all-dev python3-appdirs python3-attr
python3-biopython python3-brotli python3-cairo python3-contourpy
python3-cycler python3-dateutil python3-decorator python3-dev
python3-distutils python3-fonttools python3-freetype python3-fs
python3-iniconfig python3-kiwisolver python3-lib2to3 python3-lxml
python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-numpy
python3-packaging python3-pandas python3-pandas-lib python3-pil
python3-pil.imagetk python3-pkg-resources python3-pluggy python3-pyparsing
python3-pytest python3-reportlab python3-rlpycairo python3-scipy
python3-seaborn python3-setuptools python3-six python3-sympy python3-tk
python3-tz python3-ufolib2 python3.11 python3.11-dev python3.11-minimal
sbuild-build-depends-main-dummy sensible-utils sgml-base tk8.6-blt2.5
unicode-data w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core
zlib1g-dev
The following packages will be upgraded:
bsdutils dpkg-dev libblkid1 libdpkg-perl libmount1 libsmartcols1 libuuid1
mount util-linux
9 upgraded, 166 newly installed, 0 to remove and 23 not upgraded.
1 not fully installed or removed.
Need to get 131 MB/133 MB of archives.
After this operation, 527 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [960 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf mount armhf 2.39.2-6 [134 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf bsdutils armhf 1:2.39.2-6 [86.5 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf util-linux armhf 2.39.2-6 [1110 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf gawk armhf 1:5.2.1-2 [595 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-minimal armhf 3.11.6-3 [800 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf python3.11-minimal armhf 3.11.6-3 [1674 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf python3-minimal armhf 3.11.4-5 [26.2 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf media-types all 10.1.0 [26.9 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf mailcap all 3.70+nmu1 [32.0 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf libuuid1 armhf 2.39.2-6 [28.1 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-stdlib armhf 3.11.6-3 [1679 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf python3.11 armhf 3.11.6-3 [586 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf libpython3-stdlib armhf 3.11.4-5 [9200 B]
Get:18 http://172.17.4.1/private trixie-staging/main armhf python3 armhf 3.11.4-5 [26.2 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf sgml-base all 1.31 [15.4 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf libblkid1 armhf 2.39.2-6 [145 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf libmount1 armhf 2.39.2-6 [167 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf libsmartcols1 armhf 2.39.2-6 [102 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.2-6 [81.2 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-1 [1358 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf sensible-utils all 0.0.20 [19.3 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-13 [156 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-13 [496 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.1.0-2 [280 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf libpng16-16 armhf 1.6.40-2 [258 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [366 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf libfontenc1 armhf 1:1.1.4-1 [22.3 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf xfonts-utils armhf 1:7.7+6 [82.5 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf fonts-urw-base35 all 20200910-7 [10.8 MB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.14.2-6 [316 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.14.2-6 [367 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.7-4 [111 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.7-1 [328 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.7-1 [729 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [477 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.8 [82.1 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:71 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-13 [1201 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.8 [956 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf python3-lib2to3 all 3.11.5-1 [77.5 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf python3-distutils all 3.11.5-1 [131 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf python3-pkg-resources all 68.1.2-2 [241 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf python3-setuptools all 68.1.2-2 [468 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf dh-python all 6.20231107 [107 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-extra all 2.37-8 [1792 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf fonts-lyx all 2.3.7-1 [186 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libcairo2 armhf 1.18.0-1 [425 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf libexpat1-dev armhf 2.5.0-2 [130 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 13.2.0-5+rpi1 [247 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.78.1-4 [1257 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.0.1-1 [2098 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf libimagequant0 armhf 2.18.0-1 [30.5 kB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libjs-sphinxdoc all 7.2.6-2 [149 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1 [24.4 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf liblcms2-2 armhf 2.14-2 [124 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-3 [133 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf liblmdb0 armhf 0.9.31-1 [37.4 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf libmbedcrypto7 armhf 2.28.5-1 [243 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf libmbedx509-1 armhf 2.28.5-1 [126 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf libmbedtls14 armhf 2.28.5-1 [156 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf libopenjp2-7 armhf 2.5.0-2 [164 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf libpython3.11 armhf 3.11.6-3 [1662 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-3 [901 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-dev armhf 3.11.6-3 [3271 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf libpython3-dev armhf 3.11.4-5 [9432 B]
Get:118 http://172.17.4.1/private trixie-staging/main armhf libpython3-all-dev armhf 3.11.4-5 [1068 B]
Get:119 http://172.17.4.1/private trixie-staging/main armhf libqhull-r8.0 armhf 2020.2-6 [216 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf libraqm0 armhf 0.10.1-1 [11.7 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.3.2-0.3 [106 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.3.2-0.3 [261 kB]
Get:123 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-1 [298 kB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf libwebpdemux2 armhf 1.3.2-0.3 [106 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf libwebpmux3 armhf 1.3.2-0.3 [116 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf libxslt1.1 armhf 1.1.35-1 [221 kB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf mummer armhf 3.23+dfsg-8 [615 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf ncbi-data all 6.1.20170106+dfsg1-10 [3557 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf ncbi-blast+ armhf 2.12.0+ds-4 [10.0 MB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf python-matplotlib-data all 3.6.3-1 [2744 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf python3-all armhf 3.11.4-5 [1060 B]
Get:132 http://172.17.4.1/private trixie-staging/main armhf python3.11-dev armhf 3.11.6-3 [508 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf python3-dev armhf 3.11.4-5 [26.2 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf python3-all-dev armhf 3.11.4-5 [1068 B]
Get:135 http://172.17.4.1/private trixie-staging/main armhf python3-appdirs all 1.4.4-4 [12.5 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf python3-attr all 23.1.0-2 [67.1 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf python3-numpy armhf 1:1.24.2-1 [3826 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf python3-tk armhf 3.11.5-1 [95.9 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf python3-pil.imagetk armhf 10.0.0-1 [75.2 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf python3-pil armhf 10.0.0-1 [437 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf python3-cairo armhf 1.24.0-3 [103 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf python3-freetype all 2.4.0-1 [80.3 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf python3-rlpycairo all 0.3.0-3 [9904 B]
Get:144 http://172.17.4.1/private trixie-staging/main armhf python3-reportlab all 4.0.4-11 [668 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get:146 http://172.17.4.1/private trixie-staging/main armhf w3c-sgml-lib all 1.3-3 [273 kB]
Get:147 http://172.17.4.1/private trixie-staging/main armhf python3-biopython armhf 1.81+dfsg-2 [1570 kB]
Get:148 http://172.17.4.1/private trixie-staging/main armhf python3-brotli armhf 1.1.0-2 [290 kB]
Get:149 http://172.17.4.1/private trixie-staging/main armhf python3-contourpy armhf 1.0.7-1 [141 kB]
Get:150 http://172.17.4.1/private trixie-staging/main armhf python3-cycler all 0.11.0-1 [8020 B]
Get:151 http://172.17.4.1/private trixie-staging/main armhf python3-six all 1.16.0-4 [17.5 kB]
Get:152 http://172.17.4.1/private trixie-staging/main armhf python3-dateutil all 2.8.2-3 [78.4 kB]
Get:153 http://172.17.4.1/private trixie-staging/main armhf python3-decorator all 5.1.1-5 [15.1 kB]
Get:154 http://172.17.4.1/private trixie-staging/main armhf python3-scipy armhf 1.10.1-5+rpi1 [13.6 MB]
Get:155 http://172.17.4.1/private trixie-staging/main armhf python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB]
Get:156 http://172.17.4.1/private trixie-staging/main armhf python3-mpmath all 1.2.1-2 [418 kB]
Get:157 http://172.17.4.1/private trixie-staging/main armhf python3-sympy all 1.12-6 [3868 kB]
Get:158 http://172.17.4.1/private trixie-staging/main armhf python3-tz all 2023.3.post1-1 [30.8 kB]
Get:159 http://172.17.4.1/private trixie-staging/main armhf python3-fs all 2.4.16-2 [95.2 kB]
Get:160 http://172.17.4.1/private trixie-staging/main armhf python3-lxml armhf 4.9.3-1 [1039 kB]
Get:161 http://172.17.4.1/private trixie-staging/main armhf python3-lz4 armhf 4.0.2+dfsg-1+b1 [23.9 kB]
Get:162 http://172.17.4.1/private trixie-staging/main armhf unicode-data all 15.1.0-1 [8547 kB]
Get:163 http://172.17.4.1/private trixie-staging/main armhf python3-fonttools armhf 4.38.0-1 [1047 kB]
Get:164 http://172.17.4.1/private trixie-staging/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get:165 http://172.17.4.1/private trixie-staging/main armhf python3-kiwisolver armhf 1.4.4-1 [52.3 kB]
Get:166 http://172.17.4.1/private trixie-staging/main armhf python3-pyparsing all 3.1.1-1 [145 kB]
Get:167 http://172.17.4.1/private trixie-staging/main armhf python3-packaging all 23.1-1 [37.4 kB]
Get:168 http://172.17.4.1/private trixie-staging/main armhf python3-matplotlib armhf 3.6.3-1 [7453 kB]
Get:169 http://172.17.4.1/private trixie-staging/main armhf python3-pandas-lib armhf 1.5.3+dfsg-6 [3000 kB]
Get:170 http://172.17.4.1/private trixie-staging/main armhf python3-pandas all 1.5.3+dfsg-6 [2886 kB]
Get:171 http://172.17.4.1/private trixie-staging/main armhf python3-pluggy all 1.3.0-1 [25.1 kB]
Get:172 http://172.17.4.1/private trixie-staging/main armhf python3-pytest all 7.4.3-1 [239 kB]
Get:173 http://172.17.4.1/private trixie-staging/main armhf python3-seaborn all 0.12.2-1 [215 kB]
debconf: delaying package configuration, since apt-utils is not installed
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invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libmagic1:armhf (1:5.45-2) ...
Setting up libdeflate0:armhf (1.18-1) ...
Setting up gettext-base (0.21-13) ...
Setting up m4 (1.4.19-4) ...
Setting up libqhull-r8.0:armhf (2020.2-6) ...
Setting up file (1:5.45-2) ...
Setting up libjbig0:armhf (2.1-6.1) ...
Setting up unicode-data (15.1.0-1) ...
Setting up libfontenc1:armhf (1:1.1.4-1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libexpat1-dev:armhf (2.5.0-2) ...
Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ...
Setting up libmbedcrypto7:armhf (2.28.5-1) ...
Setting up libx11-data (2:1.8.7-1) ...
Setting up xfonts-encodings (1:1.0.4-2.2) ...
Setting up libfribidi0:armhf (1.0.13-3) ...
Setting up libimagequant0:armhf (2.18.0-1) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16:armhf (1.6.40-2) ...
Setting up libtcl8.6:armhf (8.6.13+dfsg-2) ...
Setting up autopoint (0.21-13) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up libdpkg-perl (1.22.1+rpi1) ...
Setting up libgfortran5:armhf (13.2.0-5+rpi1) ...
Setting up autoconf (2.71-3) ...
Setting up libwebp7:armhf (1.3.2-0.3) ...
Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-3) ...
Setting up fonts-dejavu-extra (2.37-8) ...
Setting up mount (2.39.2-6) ...
Setting up sensible-utils (0.0.20) ...
Setting up libtiff6:armhf (4.5.1+git230720-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up mummer (3.23+dfsg-8) ...
Setting up libopenjp2-7:armhf (2.5.0-2) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up sgml-base (1.31) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up python-matplotlib-data (3.6.3-1) ...
Setting up libwebpmux3:armhf (1.3.2-0.3) ...
Setting up libbsd0:armhf (0.11.7-4) ...
Setting up mailcap (3.70+nmu1) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up libpython3-stdlib:armhf (3.11.4-5) ...
Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up python3.11 (3.11.6-3) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-13) ...
Setting up mime-support (3.66) ...
Setting up libpython3.11:armhf (3.11.6-3) ...
Setting up libmbedx509-1:armhf (2.28.5-1) ...
Setting up libmbedtls14:armhf (2.28.5-1) ...
Setting up libtool (2.4.7-7) ...
Setting up libxcb-render0:armhf (1.15-1) ...
Setting up fontconfig-config (2.14.2-6) ...
Setting up libwebpdemux2:armhf (1.3.2-0.3) ...
Setting up python3 (3.11.4-5) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up python3-tz (2023.3.post1-1) ...
Setting up dpkg-dev (1.22.1+rpi1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up ncbi-blast+ (2.12.0+ds-4) ...
Setting up python3-six (1.16.0-4) ...
Setting up dh-autoreconf (20) ...
Setting up python3-decorator (5.1.1-5) ...
Setting up python3-packaging (23.1-1) ...
Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
Setting up python3-pyparsing (3.1.1-1) ...
Setting up libfreetype6:armhf (2.13.2+dfsg-1) ...
Setting up libpython3.11-dev:armhf (3.11.6-3) ...
Setting up python3-brotli (1.1.0-2) ...
Setting up python3-cycler (0.11.0-1) ...
Setting up python3-kiwisolver (1.4.4-1) ...
Setting up libjs-sphinxdoc (7.2.6-2) ...
Setting up python3-pluggy (1.3.0-1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.23.0-3) ...
Setting up xml-core (0.18+nmu1) ...
Setting up libxslt1.1:armhf (1.1.35-1) ...
Setting up libx11-6:armhf (2:1.8.7-1) ...
Setting up libharfbuzz0b:armhf (8.0.1-1) ...
Setting up python3-dateutil (2.8.2-3) ...
Setting up libfontconfig1:armhf (2.14.2-6) ...
Setting up python3-mpmath (1.2.1-2) ...
Setting up python3-lib2to3 (3.11.5-1) ...
Setting up python3-appdirs (1.4.4-4) ...
Setting up liblbfgsb0:armhf (3.0+dfsg.4-1) ...
Setting up python3-pkg-resources (68.1.2-2) ...
Setting up python3-distutils (3.11.5-1) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up python3-sympy (1.12-6) ...
Setting up python3-attr (23.1.0-2) ...
Setting up libpython3-dev:armhf (3.11.4-5) ...
Setting up python3-setuptools (68.1.2-2) ...
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up python3-lz4 (4.0.2+dfsg-1+b1) ...
Setting up python3.11-dev (3.11.6-3) ...
Setting up python3-pytest (7.4.3-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up python3-all (3.11.4-5) ...
Setting up python3-freetype (2.4.0-1) ...
Setting up xfonts-utils (1:7.7+6) ...
Setting up man-db (2.12.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libcairo2:armhf (1.18.0-1) ...
Setting up python3-fs (2.4.16-2) ...
Setting up libpython3-all-dev:armhf (3.11.4-5) ...
Setting up libraqm0:armhf (0.10.1-1) ...
Setting up python3-dev (3.11.4-5) ...
Setting up python3-numpy (1:1.24.2-1) ...
Setting up python3-lxml:armhf (4.9.3-1) ...
Setting up python3-contourpy (1.0.7-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up dh-python (6.20231107) ...
Setting up python3-all-dev (3.11.4-5) ...
Setting up libxft2:armhf (2.3.6-1) ...
Setting up python3-scipy (1.10.1-5+rpi1) ...
Setting up python3-cairo:armhf (1.24.0-3) ...
Setting up libtk8.6:armhf (8.6.13-2) ...
Setting up python3-pandas-lib:armhf (1.5.3+dfsg-6) ...
Setting up debhelper (13.11.8) ...
Setting up fonts-urw-base35 (20200910-7) ...
Setting up python3-pil:armhf (10.0.0-1) ...
Setting up python3-pandas (1.5.3+dfsg-6) ...
Setting up python3-rlpycairo (0.3.0-3) ...
Setting up python3-reportlab (4.0.4-11) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ...
Setting up blt (2.5.3+dfsg-4.1) ...
Setting up python3-tk:armhf (3.11.5-1) ...
Setting up python3-pil.imagetk:armhf (10.0.0-1) ...
Setting up python3-fonttools (4.38.0-1) ...
Setting up python3-ufolib2 (0.16.0+dfsg1-1) ...
Setting up python3-matplotlib (3.6.3-1) ...
Setting up python3-seaborn (0.12.2-1) ...
Processing triggers for libc-bin (2.37-12+rpi2) ...
Processing triggers for sgml-base (1.31) ...
Setting up w3c-sgml-lib (1.3-3) ...
Setting up python3-biopython (1.81+dfsg-2) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.47-v8+ #1 SMP PREEMPT Fri Sep 1 07:05:33 BST 2023 arm64 (aarch64)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.1+rpi1 g++-12_12.3.0-10+rpi1 g++-13_13.2.0-5+rpi1 gcc-12_12.3.0-10+rpi1 gcc-13_13.2.0-5+rpi1 libc6-dev_2.37-12+rpi2 libstdc++-12-dev_12.3.0-10+rpi1 libstdc++-13-dev_13.2.0-5+rpi1 libstdc++6_13.2.0-5+rpi1 linux-libc-dev_6.5.6-1+rpi1
Package versions: adduser_3.137 apt_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.2 bash_5.2.15-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 blt_2.5.3+dfsg-4.1 bsdextrautils_2.39.2-6 bsdutils_1:2.39.2-6 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-10+rpi1 cpp-13_13.2.0-5+rpi1 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.8 debianutils_5.14 dh-autoreconf_20 dh-python_6.20231107 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dpkg_1.22.1+rpi1 dpkg-dev_1.22.1+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig-config_2.14.2-6 fonts-dejavu-core_2.37-8 fonts-dejavu-extra_2.37-8 fonts-dejavu-mono_2.37-8 fonts-lyx_2.3.7-1 fonts-urw-base35_20200910-7 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-10+rpi1 g++-13_13.2.0-5+rpi1 gawk_1:5.2.1-2 gcc_4:13.2.0-1+rpi1 gcc-10-base_10.4.0-7+rpi1 gcc-12_12.3.0-10+rpi1 gcc-12-base_12.3.0-10+rpi1 gcc-13_13.2.0-5+rpi1 gcc-13-base_13.2.0-5+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-13 gettext-base_0.21-13 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libapt-pkg6.0_2.7.6 libarchive-zip-perl_1.68-1 libasan8_13.2.0-5+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-5+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libbinutils_2.41-6+rpi1 libblas3_3.11.0-2 libblkid1_2.39.2-6 libbrotli1_1.1.0-2 libbsd0_0.11.7-4 libbz2-1.0_1.0.8-5+b2 libc-bin_2.37-12+rpi2 libc-dev-bin_2.37-12+rpi2 libc6_2.37-12+rpi2 libc6-dev_2.37-12+rpi2 libcairo2_1.18.0-1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-4 libcc1-0_13.2.0-5+rpi1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41-6+rpi1 libctf0_2.41-6+rpi1 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.271 libdebhelper-perl_13.11.8 libdeflate0_1.18-1 libdpkg-perl_1.22.1+rpi1 libelf1_0.188-2.1+rpi1 libexpat1_2.5.0-2 libexpat1-dev_2.5.0-2 libext2fs2_1.47.0-2 libfakeroot_1.32.1-1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libfontconfig1_2.14.2-6 libfontenc1_1:1.1.4-1 libfreetype6_2.13.2+dfsg-1 libfribidi0_1.0.13-3 libgcc-12-dev_12.3.0-10+rpi1 libgcc-13-dev_13.2.0-5+rpi1 libgcc-s1_13.2.0-5+rpi1 libgcrypt20_1.10.2-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_13.2.0-5+rpi1 libglib2.0-0_2.78.1-4 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.1-4 libgomp1_13.2.0-5+rpi1 libgpg-error0_1.47-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20.1-4 libharfbuzz0b_8.0.1-1 libhogweed6_3.9.1-2 libicu72_72.1-4 libidn2-0_2.3.4-1 libimagequant0_2.18.0-1 libisl23_0.26-3 libjansson4_2.14-2 libjbig0_2.1-6.1 libjpeg62-turbo_1:2.1.5-2 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-jquery-ui_1.13.2+dfsg-1 libjs-sphinxdoc_7.2.6-2 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libk5crypto3_1.20.1-4 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-4 libkrb5support0_1.20.1-4 libksba8_1.6.4-2 liblapack3_3.11.0-2 liblbfgsb0_3.0+dfsg.4-1 liblcms2-2_2.14-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1 liblerc4_4.0.0+ds-3 liblmdb0_0.9.31-1 liblocale-gettext-perl_1.07-6 liblz4-1_1.9.4-1+rpi1+b1 liblzma5_5.4.4-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmbedcrypto7_2.28.5-1 libmbedtls14_2.28.5-1 libmbedx509-1_2.28.5-1 libmd0_1.1.0-1 libmount1_2.39.2-6 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncursesw6_6.4+20231016-1 libnettle8_3.9.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libopenjp2-7_2.5.0-2 libp11-kit0_0.25.0-5 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpcre2-8-0_10.42-4 libperl5.36_5.36.0-9 libpipeline1_1.5.7-1 libpixman-1-0_0.42.2-1 libpng16-16_1.6.40-2 libpython3-all-dev_3.11.4-5 libpython3-dev_3.11.4-5 libpython3-stdlib_3.11.4-5 libpython3.11_3.11.6-3 libpython3.11-dev_3.11.6-3 libpython3.11-minimal_3.11.6-3 libpython3.11-stdlib_3.11.6-3 libqhull-r8.0_2020.2-6 libraqm0_0.10.1-1 libreadline8_8.2-1.3 libsasl2-2_2.1.28+dfsg1-3 libsasl2-modules-db_2.1.28+dfsg1-3 libseccomp2_2.5.4-1+rpi1+b1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol2_3.5-1 libsframe1_2.41-6+rpi1 libsharpyuv0_1.3.2-0.3 libsigsegv2_2.14-1 libsmartcols1_2.39.2-6 libsqlite3-0_3.43.2-1 libss2_1.47.0-2 libssl3_3.0.11-1 libstdc++-12-dev_12.3.0-10+rpi1 libstdc++-13-dev_13.2.0-5+rpi1 libstdc++6_13.2.0-5+rpi1 libsub-override-perl_0.09-4 libsystemd0_254.5-1+rpi1 libtasn1-6_4.19.0-3 libtcl8.6_8.6.13+dfsg-2 libtext-charwidth-perl_0.04-11 libtext-iconv-perl_1.7-8 libtiff6_4.5.1+git230720-1 libtinfo6_6.4+20231016-1 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtk8.6_8.6.13-2 libtool_2.4.7-7 libubsan1_13.2.0-5+rpi1 libuchardet0_0.0.7-1 libudev1_254.5-1+rpi1 libunistring5_1.1-2 libuuid1_2.39.2-6 libwebp7_1.3.2-0.3 libwebpdemux2_1.3.2-0.3 libwebpmux3_1.3.2-0.3 libx11-6_2:1.8.7-1 libx11-data_2:1.8.7-1 libxau6_1:1.0.9-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1.3 libxrender1_1:0.9.10-1.1 libxslt1.1_1.1.35-1 libxss1_1:1.2.3-1 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.6-1+rpi1 login_1:4.13+dfsg1-3 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 mailcap_3.70+nmu1 make_4.3-4.1 man-db_2.12.0-1 mawk_1.3.4.20230808-1 media-types_10.1.0 mime-support_3.66 mount_2.39.2-6 mummer_3.23+dfsg-8 ncbi-blast+_2.12.0+ds-4 ncbi-data_6.1.20170106+dfsg1-10 ncurses-base_6.4+20231016-1 ncurses-bin_6.4+20231016-1 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.36.0-9 perl-base_5.36.0-9 perl-modules-5.36_5.36.0-9 pinentry-curses_1.2.1-1 po-debconf_1.0.21+nmu1 python-matplotlib-data_3.6.3-1 python3_3.11.4-5 python3-all_3.11.4-5 python3-all-dev_3.11.4-5 python3-appdirs_1.4.4-4 python3-attr_23.1.0-2 python3-biopython_1.81+dfsg-2 python3-brotli_1.1.0-2 python3-cairo_1.24.0-3 python3-contourpy_1.0.7-1 python3-cycler_0.11.0-1 python3-dateutil_2.8.2-3 python3-decorator_5.1.1-5 python3-dev_3.11.4-5 python3-distutils_3.11.5-1 python3-fonttools_4.38.0-1 python3-freetype_2.4.0-1 python3-fs_2.4.16-2 python3-iniconfig_1.1.1-2 python3-kiwisolver_1.4.4-1 python3-lib2to3_3.11.5-1 python3-lxml_4.9.3-1 python3-lz4_4.0.2+dfsg-1+b1 python3-matplotlib_3.6.3-1 python3-minimal_3.11.4-5 python3-mpmath_1.2.1-2 python3-numpy_1:1.24.2-1 python3-packaging_23.1-1 python3-pandas_1.5.3+dfsg-6 python3-pandas-lib_1.5.3+dfsg-6 python3-pil_10.0.0-1 python3-pil.imagetk_10.0.0-1 python3-pkg-resources_68.1.2-2 python3-pluggy_1.3.0-1 python3-pyparsing_3.1.1-1 python3-pytest_7.4.3-1 python3-reportlab_4.0.4-11 python3-rlpycairo_0.3.0-3 python3-scipy_1.10.1-5+rpi1 python3-seaborn_0.12.2-1 python3-setuptools_68.1.2-2 python3-six_1.16.0-4 python3-sympy_1.12-6 python3-tk_3.11.5-1 python3-tz_2023.3.post1-1 python3-ufolib2_0.16.0+dfsg1-1 python3.11_3.11.6-3 python3.11-dev_3.11.6-3 python3.11-minimal_3.11.6-3 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sgml-base_1.31 sysvinit-utils_3.08-3 tar_1.34+dfsg-1.2 tk8.6-blt2.5_2.5.3+dfsg-4.1 tzdata_2023c-10 unicode-data_15.1.0-1 usr-is-merged_37 util-linux_2.39.2-6 w3c-sgml-lib_1.3-3 x11-common_1:7.7+23 xfonts-encodings_1:1.0.4-2.2 xfonts-utils_1:7.7+6 xml-core_0.18+nmu1 xz-utils_5.4.4-0.1 zlib1g_1:1.2.13.dfsg-3 zlib1g-dev_1:1.2.13.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: python-pyani
Binary: python3-pyani
Architecture: any
Version: 0.2.12-3
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://github.com/widdowquinn/pyani
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/python-pyani
Vcs-Git: https://salsa.debian.org/med-team/python-pyani.git
Testsuite: autopkgtest, autopkgtest-pkg-python
Testsuite-Triggers: python3-all, python3-pytest
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, python3-biopython <!nocheck>, python3-matplotlib <!nocheck>, python3-pandas <!nocheck>, python3-scipy <!nocheck>, python3-seaborn <!nocheck>, mummer <!nocheck>, ncbi-blast+ <!nocheck>, python3-pytest <!nocheck>
Package-List:
python3-pyani deb python optional arch=any
Checksums-Sha1:
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60d43d56d1f100769c150f7b8c87e11e6c92add9 11404 python-pyani_0.2.12-3.debian.tar.xz
Checksums-Sha256:
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811e72aaf7f67bc5f2c6d5538f527ad610ffab339278526ff33cae6826100ea6 11404 python-pyani_0.2.12-3.debian.tar.xz
Files:
be120c6027f0fb7e14bbefeff7cb9abb 49038533 python-pyani_0.2.12.orig.tar.gz
d629542deb83329b306d5d71bdcf7805 11404 python-pyani_0.2.12-3.debian.tar.xz
-----BEGIN PGP SIGNATURE-----
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gpgv: Signature made Fri Nov 24 20:24:53 2023 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./python-pyani_0.2.12-3.dsc: no acceptable signature found
dpkg-source: info: extracting python-pyani in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-pyani_0.2.12.orig.tar.gz
dpkg-source: info: unpacking python-pyani_0.2.12-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying pytest.patch
dpkg-source: info: applying dataframe_sort.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=124
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-611a4882-f539-485e-8529-03f4add64d78
SCHROOT_UID=114
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mRaspbian pi5 test autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package python-pyani
dpkg-buildpackage: info: source version 0.2.12-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:310: python3.11 setup.py clean
/usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
rm -f pyani.egg-info/PKG-INFO pyani.egg-info/SOURCES.txt pyani.egg-info/dependency_links.txt pyani.egg-info/requires.txt pyani.egg-info/top_level.txt
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:310: python3.11 setup.py config
/usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:310: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani
copying pyani/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani
copying pyani/anib.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani
copying pyani/anim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani
copying pyani/pyani_config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani
copying pyani/pyani_files.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani
copying pyani/pyani_graphics.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani
copying pyani/pyani_jobs.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani
copying pyani/pyani_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani
copying pyani/run_multiprocessing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani
copying pyani/run_sge.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani
copying pyani/tetra.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani
running egg_info
creating pyani.egg-info
writing pyani.egg-info/PKG-INFO
writing dependency_links to pyani.egg-info/dependency_links.txt
writing requirements to pyani.egg-info/requires.txt
writing top-level names to pyani.egg-info/top_level.txt
writing manifest file 'pyani.egg-info/SOURCES.txt'
reading manifest file 'pyani.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'pyani.egg-info/SOURCES.txt'
running build_scripts
creating build
creating build/scripts-3.11
copying and adjusting bin/average_nucleotide_identity.py -> build/scripts-3.11
copying and adjusting bin/genbank_get_genomes_by_taxon.py -> build/scripts-3.11
copying and adjusting bin/delta_filter_wrapper.py -> build/scripts-3.11
changing mode of build/scripts-3.11/average_nucleotide_identity.py from 644 to 755
changing mode of build/scripts-3.11/genbank_get_genomes_by_taxon.py from 644 to 755
changing mode of build/scripts-3.11/delta_filter_wrapper.py from 644 to 755
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:310: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build; python3.11 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.11.6, pytest-7.4.3, pluggy-1.3.0
rootdir: /<<PKGBUILDDIR>>
collected 56 items
tests/test_anib.py sss.....sss...ss [ 28%]
tests/test_anim.py ...... [ 39%]
tests/test_concordance.py .s.. [ 46%]
tests/test_dependencies.py ......s. [ 60%]
tests/test_graphics.py ...... [ 71%]
tests/test_jobs.py ......... [ 87%]
tests/test_multiprocessing.py ... [ 92%]
tests/test_parsing.py . [ 94%]
tests/test_tetra.py ... [100%]
=============================== warnings summary ===============================
pyani/pyani_graphics.py:70
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/pyani_graphics.py:70: PendingDeprecationWarning: The register_cmap function will be deprecated in a future version. Use ``matplotlib.colormaps.register(name)`` instead.
plt.register_cmap(cmap=pyani_config.CMAP_SPBND_BURD)
pyani/pyani_graphics.py:71
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/pyani_graphics.py:71: PendingDeprecationWarning: The register_cmap function will be deprecated in a future version. Use ``matplotlib.colormaps.register(name)`` instead.
plt.register_cmap(cmap=pyani_config.CMAP_HADAMARD_BURD)
pyani/pyani_graphics.py:72
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/pyani_graphics.py:72: PendingDeprecationWarning: The register_cmap function will be deprecated in a future version. Use ``matplotlib.colormaps.register(name)`` instead.
plt.register_cmap(cmap=pyani_config.CMAP_BURD)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
============ 46 passed, 10 skipped, 3 warnings in 174.57s (0:02:54) ============
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install --destdir=debian/python3-pyani/ -a -O--buildsystem=pybuild
I: pybuild base:310: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-pyani
/usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_py
running egg_info
writing pyani.egg-info/PKG-INFO
writing dependency_links to pyani.egg-info/dependency_links.txt
writing requirements to pyani.egg-info/requires.txt
writing top-level names to pyani.egg-info/top_level.txt
reading manifest file 'pyani.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'pyani.egg-info/SOURCES.txt'
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/anib.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/anim.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/pyani_config.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/pyani_files.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/pyani_graphics.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/pyani_jobs.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/pyani_tools.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/run_multiprocessing.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/run_sge.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/tetra.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/__pycache__/anib.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/__pycache__/pyani_config.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/__pycache__/pyani_files.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/__pycache__/pyani_jobs.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/__pycache__/pyani_tools.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/__pycache__/anim.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/__pycache__/run_multiprocessing.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/__pycache__/tetra.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyani/build/pyani/__pycache__/pyani_graphics.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani/__pycache__
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani/anib.py to anib.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani/anim.py to anim.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani/pyani_config.py to pyani_config.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani/pyani_files.py to pyani_files.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani/pyani_graphics.py to pyani_graphics.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani/pyani_jobs.py to pyani_jobs.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani/pyani_tools.py to pyani_tools.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani/run_multiprocessing.py to run_multiprocessing.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani/run_sge.py to run_sge.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani/tetra.py to tetra.cpython-311.pyc
running install_egg_info
Copying pyani.egg-info to /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.11/dist-packages/pyani-0.2.12.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin
copying build/scripts-3.11/average_nucleotide_identity.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin
copying build/scripts-3.11/genbank_get_genomes_by_taxon.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin
copying build/scripts-3.11/delta_filter_wrapper.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin/average_nucleotide_identity.py to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin/genbank_get_genomes_by_taxon.py to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin/delta_filter_wrapper.py to 755
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installman --language=C
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pyani' in '../python3-pyani_0.2.12-3_armhf.deb'.
dpkg-genbuildinfo --build=any -O../python-pyani_0.2.12-3_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi5 test autobuilder <root@raspbian.org> -O../python-pyani_0.2.12-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-11-27T09:06:36Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-pyani_0.2.12-3_armhf.changes:
------------------------------------
Format: 1.8
Date: Fri, 24 Nov 2023 22:32:48 +0530
Source: python-pyani
Binary: python3-pyani
Architecture: armhf
Version: 0.2.12-3
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian pi5 test autobuilder <root@raspbian.org>
Changed-By: Ananthu C V <weepingclown@disroot.org>
Description:
python3-pyani - Python3 module for average nucleotide identity analyses
Closes: 1044066
Changes:
python-pyani (0.2.12-3) unstable; urgency=medium
.
[ Ananthu C V ]
* Team upload
* add patch to fix dataframe sorting syntax (Closes: #1044066)
.
[ Andreas Tille ]
* Standards-Version: 4.6.2 (routine-update)
* Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
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| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: python-pyani
Binary: python3-pyani
Architecture: armhf
Version: 0.2.12-3
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Mon, 27 Nov 2023 09:06:35 +0000
Build-Path: /<<PKGBUILDDIR>>
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mailcap (= 3.70+nmu1),
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media-types (= 10.1.0),
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ncbi-data (= 6.1.20170106+dfsg1-10),
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ncurses-bin (= 6.4+20231016-1),
patch (= 2.7.6-7),
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perl-modules-5.36 (= 5.36.0-9),
po-debconf (= 1.0.21+nmu1),
python-matplotlib-data (= 3.6.3-1),
python3 (= 3.11.4-5),
python3-all (= 3.11.4-5),
python3-all-dev (= 3.11.4-5),
python3-appdirs (= 1.4.4-4),
python3-attr (= 23.1.0-2),
python3-biopython (= 1.81+dfsg-2),
python3-brotli (= 1.1.0-2),
python3-cairo (= 1.24.0-3),
python3-contourpy (= 1.0.7-1),
python3-cycler (= 0.11.0-1),
python3-dateutil (= 2.8.2-3),
python3-decorator (= 5.1.1-5),
python3-dev (= 3.11.4-5),
python3-distutils (= 3.11.5-1),
python3-fonttools (= 4.38.0-1),
python3-freetype (= 2.4.0-1),
python3-fs (= 2.4.16-2),
python3-iniconfig (= 1.1.1-2),
python3-kiwisolver (= 1.4.4-1),
python3-lib2to3 (= 3.11.5-1),
python3-lxml (= 4.9.3-1),
python3-lz4 (= 4.0.2+dfsg-1+b1),
python3-matplotlib (= 3.6.3-1),
python3-minimal (= 3.11.4-5),
python3-mpmath (= 1.2.1-2),
python3-numpy (= 1:1.24.2-1),
python3-packaging (= 23.1-1),
python3-pandas (= 1.5.3+dfsg-6),
python3-pandas-lib (= 1.5.3+dfsg-6),
python3-pil (= 10.0.0-1),
python3-pil.imagetk (= 10.0.0-1),
python3-pkg-resources (= 68.1.2-2),
python3-pluggy (= 1.3.0-1),
python3-pyparsing (= 3.1.1-1),
python3-pytest (= 7.4.3-1),
python3-reportlab (= 4.0.4-11),
python3-rlpycairo (= 0.3.0-3),
python3-scipy (= 1.10.1-5+rpi1),
python3-seaborn (= 0.12.2-1),
python3-setuptools (= 68.1.2-2),
python3-six (= 1.16.0-4),
python3-sympy (= 1.12-6),
python3-tk (= 3.11.5-1),
python3-tz (= 2023.3.post1-1),
python3-ufolib2 (= 0.16.0+dfsg1-1),
python3.11 (= 3.11.6-3),
python3.11-dev (= 3.11.6-3),
python3.11-minimal (= 3.11.6-3),
readline-common (= 8.2-1.3),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-1),
sensible-utils (= 0.0.20),
sgml-base (= 1.31),
sysvinit-utils (= 3.08-3),
tar (= 1.34+dfsg-1.2),
tk8.6-blt2.5 (= 2.5.3+dfsg-4.1),
tzdata (= 2023c-10),
unicode-data (= 15.1.0-1),
usr-is-merged (= 37),
util-linux (= 2.39.2-6),
w3c-sgml-lib (= 1.3-3),
x11-common (= 1:7.7+23),
xfonts-encodings (= 1:1.0.4-2.2),
xfonts-utils (= 1:7.7+6),
xml-core (= 0.18+nmu1),
xz-utils (= 5.4.4-0.1),
zlib1g (= 1:1.2.13.dfsg-3),
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Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
LC_COLLATE="C.UTF-8"
SOURCE_DATE_EPOCH="1700845368"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-pyani_0.2.12-3_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 48252 bytes: control archive=1820 bytes.
841 bytes, 17 lines control
2017 bytes, 24 lines md5sums
273 bytes, 12 lines * postinst #!/bin/sh
386 bytes, 12 lines * prerm #!/bin/sh
Package: python3-pyani
Source: python-pyani
Version: 0.2.12-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 208
Depends: python3-biopython, python3-matplotlib, python3-pandas, python3-scipy, python3-seaborn, python3:any, python3-setuptools, mummer, ncbi-blast+
Section: python
Priority: optional
Homepage: https://github.com/widdowquinn/pyani
Description: Python3 module for average nucleotide identity analyses
Pyani is a Python3 module and script that provides support for
calculating average nucleotide identity (ANI) and related measures for
whole genome comparisons, and rendering relevant graphical summary
output. Where available, it takes advantage of multicore systems, and
can integrate with SGE/OGE-type job schedulers for the sequence
comparisons.
drwxr-xr-x root/root 0 2023-11-24 17:02 ./
drwxr-xr-x root/root 0 2023-11-24 17:02 ./usr/
drwxr-xr-x root/root 0 2023-11-24 17:02 ./usr/bin/
-rwxr-xr-x root/root 36576 2023-11-24 17:02 ./usr/bin/average_nucleotide_identity.py
-rwxr-xr-x root/root 2690 2023-11-24 17:02 ./usr/bin/delta_filter_wrapper.py
-rwxr-xr-x root/root 27037 2023-11-24 17:02 ./usr/bin/genbank_get_genomes_by_taxon.py
drwxr-xr-x root/root 0 2023-11-24 17:02 ./usr/lib/
drwxr-xr-x root/root 0 2023-11-24 17:02 ./usr/lib/python3/
drwxr-xr-x root/root 0 2023-11-24 17:02 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2023-11-24 17:02 ./usr/lib/python3/dist-packages/pyani-0.2.12.egg-info/
-rw-r--r-- root/root 20502 2023-11-24 17:02 ./usr/lib/python3/dist-packages/pyani-0.2.12.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2023-11-24 17:02 ./usr/lib/python3/dist-packages/pyani-0.2.12.egg-info/dependency_links.txt
-rw-r--r-- root/root 0 2023-11-24 17:02 ./usr/lib/python3/dist-packages/pyani-0.2.12.egg-info/requires.txt
-rw-r--r-- root/root 6 2023-11-24 17:02 ./usr/lib/python3/dist-packages/pyani-0.2.12.egg-info/top_level.txt
drwxr-xr-x root/root 0 2023-11-24 17:02 ./usr/lib/python3/dist-packages/pyani/
-rw-r--r-- root/root 116 2022-05-18 21:29 ./usr/lib/python3/dist-packages/pyani/__init__.py
-rw-r--r-- root/root 21988 2022-05-18 21:29 ./usr/lib/python3/dist-packages/pyani/anib.py
-rw-r--r-- root/root 9522 2022-05-18 21:29 ./usr/lib/python3/dist-packages/pyani/anim.py
-rw-r--r-- root/root 5789 2022-05-18 21:29 ./usr/lib/python3/dist-packages/pyani/pyani_config.py
-rw-r--r-- root/root 1664 2022-05-18 21:29 ./usr/lib/python3/dist-packages/pyani/pyani_files.py
-rw-r--r-- root/root 14135 2022-05-18 21:29 ./usr/lib/python3/dist-packages/pyani/pyani_graphics.py
-rw-r--r-- root/root 7157 2022-05-18 21:29 ./usr/lib/python3/dist-packages/pyani/pyani_jobs.py
-rw-r--r-- root/root 6905 2022-05-18 21:29 ./usr/lib/python3/dist-packages/pyani/pyani_tools.py
-rw-r--r-- root/root 3249 2022-05-18 21:29 ./usr/lib/python3/dist-packages/pyani/run_multiprocessing.py
-rw-r--r-- root/root 9985 2022-05-18 21:29 ./usr/lib/python3/dist-packages/pyani/run_sge.py
-rw-r--r-- root/root 6239 2022-05-18 21:29 ./usr/lib/python3/dist-packages/pyani/tetra.py
drwxr-xr-x root/root 0 2023-11-24 17:02 ./usr/share/
drwxr-xr-x root/root 0 2023-11-24 17:02 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-11-24 17:02 ./usr/share/doc/python3-pyani/
-rw-r--r-- root/root 1130 2023-11-24 17:02 ./usr/share/doc/python3-pyani/changelog.Debian.gz
-rw-r--r-- root/root 2446 2022-05-18 21:29 ./usr/share/doc/python3-pyani/changelog.gz
-rw-r--r-- root/root 1361 2023-11-24 17:02 ./usr/share/doc/python3-pyani/copyright
drwxr-xr-x root/root 0 2023-11-24 17:02 ./usr/share/lintian/
drwxr-xr-x root/root 0 2023-11-24 17:02 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 110 2023-11-24 17:02 ./usr/share/lintian/overrides/python3-pyani
drwxr-xr-x root/root 0 2023-11-24 17:02 ./usr/share/man/
drwxr-xr-x root/root 0 2023-11-24 17:02 ./usr/share/man/man1/
-rw-r--r-- root/root 1575 2023-11-24 17:02 ./usr/share/man/man1/average_nucleotide_identity.py.1.gz
-rw-r--r-- root/root 756 2023-11-24 17:02 ./usr/share/man/man1/genbank_get_genomes_by_taxon.py.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 160656
Build-Time: 181
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 163
Job: python-pyani_0.2.12-3
Machine Architecture: arm64
Package: python-pyani
Package-Time: 361
Source-Version: 0.2.12-3
Space: 160656
Status: successful
Version: 0.2.12-3
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Finished at 2023-11-27T09:06:36Z
Build needed 00:06:01, 160656k disk space