Build log for python-pyani (0.2.12-2) on armhf

python-pyani → 0.2.12-2 → armhf → 2022-12-06 19:54:43

sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02

+==============================================================================+
| python-pyani 0.2.12-2 (armhf)                Tue, 06 Dec 2022 19:27:32 +0000 |
+==============================================================================+

Package: python-pyani
Version: 0.2.12-2
Source Version: 0.2.12-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-8e17f255-3b87-4a45-be3c-20e6b7743fed' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.5 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.3 MB]
Fetched 27.8 MB in 10s (2896 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'python-pyani' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-pyani.git
Please use:
git clone https://salsa.debian.org/med-team/python-pyani.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 49.1 MB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main python-pyani 0.2.12-2 (dsc) [2517 B]
Get:2 http://172.17.4.1/private bookworm-staging/main python-pyani 0.2.12-2 (tar) [49.0 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main python-pyani 0.2.12-2 (diff) [11.0 kB]
Fetched 49.1 MB in 5s (10.3 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-pyani-qtHj6B/python-pyani-0.2.12' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-pyani-qtHj6B' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-tjrVG9/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-tjrVG9/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-tjrVG9/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-tjrVG9/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-tjrVG9/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-tjrVG9/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-tjrVG9/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-tjrVG9/apt_archive ./ Packages [433 B]
Fetched 2109 B in 0s (8037 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libpam-cap libperl5.34 netbase perl-modules-5.34 sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 81 not upgraded.
Need to get 856 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-tjrVG9/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 856 B in 0s (66.4 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14774 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, python3-biopython, python3-matplotlib, python3-pandas, python3-scipy, python3-seaborn, mummer, ncbi-blast+, python3-pytest
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, python3-biopython, python3-matplotlib, python3-pandas, python3-scipy, python3-seaborn, mummer, ncbi-blast+, python3-pytest
dpkg-deb: building package 'sbuild-build-depends-python-pyani-dummy' in '/<<BUILDDIR>>/resolver-tjrVG9/apt_archive/sbuild-build-depends-python-pyani-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-python-pyani-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-tjrVG9/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-tjrVG9/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-tjrVG9/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-tjrVG9/apt_archive ./ Sources [583 B]
Get:5 copy:/<<BUILDDIR>>/resolver-tjrVG9/apt_archive ./ Packages [646 B]
Fetched 2562 B in 0s (12.1 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install python-pyani build dependencies (apt-based resolver)
------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libpam-cap libperl5.34 netbase perl-modules-5.34
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev blt bsdextrautils bsdutils cpp-12
  debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
  fontconfig-config fonts-dejavu-core fonts-lyx fonts-urw-base35 g++-12 gawk
  gcc-12 gcc-12-base gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libasan8 libatomic1 libblas3 libblkid1 libbrotli1
  libbsd0 libcc1-0 libdebhelper-perl libdeflate0 libelf1 libexpat1
  libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfontenc1
  libfreetype6 libfribidi0 libgcc-12-dev libgcc-s1 libgfortran5 libglib2.0-0
  libgomp1 libgraphite2-3 libharfbuzz0b libicu72 libimagequant0 libjbig0
  libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc
  libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblmdb0
  libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmd0
  libmount1 libmpdec3 libopenjp2-7 libpipeline1 libpng16-16 libpython3-all-dev
  libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev
  libpython3.10-minimal libpython3.10-stdlib libqhull-r8.0 libraqm0
  libsigsegv2 libsmartcols1 libstdc++-12-dev libstdc++6 libsub-override-perl
  libtcl8.6 libtiff5 libtk8.6 libtool libubsan1 libuchardet0 libuuid1 libwebp7
  libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
  libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 m4 mailcap man-db
  media-types mime-support mount mummer ncbi-blast+ ncbi-data po-debconf
  python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs
  python3-attr python3-biopython python3-brotli python3-cycler
  python3-dateutil python3-decorator python3-dev python3-distutils
  python3-fonttools python3-fs python3-iniconfig python3-kiwisolver
  python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal
  python3-more-itertools python3-mpmath python3-numpy python3-packaging
  python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk
  python3-pkg-resources python3-pluggy python3-py python3-pyparsing
  python3-pytest python3-renderpm python3-reportlab python3-reportlab-accel
  python3-scipy python3-seaborn python3-setuptools python3-six python3-sympy
  python3-tk python3-tomli python3-tz python3-ufolib2 python3-unicodedata2
  python3.10 python3.10-dev python3.10-minimal tk8.6-blt2.5 ucf unicode-data
  util-linux util-linux-extra w3c-sgml-lib x11-common xfonts-encodings
  xfonts-utils xml-core zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc blt-demo gcc-12-locales
  cpp-12-doc dh-make flit python3-build python3-installer fonts-freefont-otf
  | fonts-freefont-ttf fonts-texgyre gcc-12-doc gawk-doc gettext-doc
  libasprintf-dev libgettextpo-dev groff low-memory-monitor
  libjs-jquery-ui-docs liblcms2-utils cryptsetup-bin libstdc++-12-doc tcl8.6
  tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
  www-browser nfs-common libmail-box-perl python3-doc python3-venv
  python-attr-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft
  muscle phylip phyml prank probcons python3-mysqldb python3-mmtf
  python3-rdflib python3-psycopg2 raxml samtools t-coffee wise
  python-cycler-doc python-lxml-doc cm-super-minimal dvipng ffmpeg
  fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common
  python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo
  python3-gobject python3-pyqt5 python3-sip python3-tornado
  texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2
  gfortran python-numpy-doc python-pandas-doc python3-statsmodels
  python-pil-doc subversion python-pyparsing-doc pdf-viewer
  python3-egenix-mxtexttools python-reportlab-doc python-scipy-doc
  python-setuptools-doc texlive-fonts-extra python-sympy-doc tix
  python3-tk-dbg python3.10-venv python3.10-doc binfmt-support dosfstools kbd
  util-linux-locales
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs javascript-common libltdl-dev uuid-runtime
  libmail-sendmail-perl python-biopython-doc python3-bs4 python3-html5lib
  python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-xlwt
  python3-tables python3-jinja2 python3-olefile python3-pygments python3-patsy
  isympy-common
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev blt bsdextrautils debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config
  fonts-dejavu-core fonts-lyx fonts-urw-base35 gawk gettext gettext-base
  groff-base intltool-debian libarchive-zip-perl libblas3 libbrotli1 libbsd0
  libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev
  libfile-stripnondeterminism-perl libfontconfig1 libfontenc1 libfreetype6
  libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libicu72
  libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui
  libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4
  liblmdb0 libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1
  libmd0 libmpdec3 libopenjp2-7 libpipeline1 libpng16-16 libpython3-all-dev
  libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev
  libpython3.10-minimal libpython3.10-stdlib libqhull-r8.0 libraqm0
  libsigsegv2 libsub-override-perl libtcl8.6 libtiff5 libtk8.6 libtool
  libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6
  libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 m4
  mailcap man-db media-types mime-support mummer ncbi-blast+ ncbi-data
  po-debconf python-matplotlib-data python3 python3-all python3-all-dev
  python3-appdirs python3-attr python3-biopython python3-brotli python3-cycler
  python3-dateutil python3-decorator python3-dev python3-distutils
  python3-fonttools python3-fs python3-iniconfig python3-kiwisolver
  python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal
  python3-more-itertools python3-mpmath python3-numpy python3-packaging
  python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk
  python3-pkg-resources python3-pluggy python3-py python3-pyparsing
  python3-pytest python3-renderpm python3-reportlab python3-reportlab-accel
  python3-scipy python3-seaborn python3-setuptools python3-six python3-sympy
  python3-tk python3-tomli python3-tz python3-ufolib2 python3-unicodedata2
  python3.10 python3.10-dev python3.10-minimal
  sbuild-build-depends-python-pyani-dummy tk8.6-blt2.5 ucf unicode-data
  w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev
The following packages will be upgraded:
  bsdutils cpp-12 g++-12 gcc-12 gcc-12-base libasan8 libatomic1 libblkid1
  libcc1-0 libgcc-12-dev libgcc-s1 libgomp1 libmount1 libsmartcols1
  libstdc++-12-dev libstdc++6 libubsan1 libuuid1 mount util-linux
  util-linux-extra
21 upgraded, 162 newly installed, 0 to remove and 60 not upgraded.
Need to get 154 MB of archives.
After this operation, 506 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-tjrVG9/apt_archive ./ sbuild-build-depends-python-pyani-dummy 0.invalid.0 [932 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf bsdutils armhf 1:2.38.1-4 [83.9 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libsmartcols1 armhf 2.38.1-4 [91.6 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf util-linux-extra armhf 2.38.1-4 [98.1 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf util-linux armhf 2.38.1-4 [1062 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf mount armhf 2.38.1-4 [126 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf gawk armhf 1:5.1.0-1 [533 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-minimal armhf 3.10.8-3 [769 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 12.2.0-9+rpi1 [32.2 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12.2.0-9+rpi1 [37.2 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 12.2.0-9+rpi1 [36.1 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 12.2.0-9+rpi1 [95.4 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 12.2.0-9+rpi1 [8224 B]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libasan8 armhf 12.2.0-9+rpi1 [2089 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 12.2.0-9+rpi1 [861 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf g++-12 armhf 12.2.0-9+rpi1 [7913 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-12-dev armhf 12.2.0-9+rpi1 [2025 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libgcc-12-dev armhf 12.2.0-9+rpi1 [725 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf gcc-12 armhf 12.2.0-9+rpi1 [14.2 MB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf cpp-12 armhf 12.2.0-9+rpi1 [7156 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 12.2.0-9+rpi1 [504 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.8-3 [1478 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.10.6-1 [38.7 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf media-types all 8.0.0 [33.4 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf mailcap all 3.70+nmu1 [32.0 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libuuid1 armhf 2.38.1-4 [27.1 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.8-3 [1597 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.8-3 [506 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.10.6-1 [21.7 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.10.6-1 [38.2 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libblkid1 armhf 2.38.1-4 [131 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libmount1 armhf 2.38.1-4 [144 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-4 [78.8 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.1-1 [1341 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-10 [156 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-10 [495 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-1 [906 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.39-2 [258 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [352 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libfontenc1 armhf 1:1.1.4-1 [22.3 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf xfonts-encodings all 1:1.0.4-2.1 [573 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf xfonts-utils armhf 1:7.7+6 [82.5 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf fonts-urw-base35 all 20200910-6 [6374 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config armhf 2.13.1-4.5 [281 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.5 [330 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-1 [112 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.8.1-2 [308 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.8.1-2 [704 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.13-1 [680 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [477 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.1 [80.8 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-2 [19.4 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-2 [8556 B]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14+20220924-2 [93.1 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1 [570 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-10 [1203 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.1 [941 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.10.8-1 [77.3 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.10.8-1 [139 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220819+rpi1 [114 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf fonts-lyx all 2.3.6.1-1 [206 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-2 [109 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.5.0-1 [130 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-9+rpi1 [238 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.74.1-2 [1214 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 5.2.0-2+b1 [1832 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libimagequant0 armhf 2.17.0-1 [28.0 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-2 [116 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.5.0-4 [142 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-2 [1587 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-11 [24.3 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.13.1-1 [125 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-2 [133 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf liblmdb0 armhf 0.9.24-1 [38.7 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libmbedcrypto7 armhf 2.28.1-1 [243 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libmbedx509-1 armhf 2.28.1-1 [125 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libmbedtls14 armhf 2.28.1-1 [157 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libopenjp2-7 armhf 2.5.0-1 [165 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10 armhf 3.10.8-3 [1458 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4.1 [183 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-dev armhf 3.10.8-3 [2935 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.10.6-1 [22.0 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.10.6-1 [1068 B]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libqhull-r8.0 armhf 2020.2-5 [221 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libraqm0 armhf 0.7.0-4 [9388 B]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2+b1 [237 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-6 [278 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libwebpdemux2 armhf 1.2.2-2+b1 [95.5 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libwebpmux3 armhf 1.2.2-2+b1 [103 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libxslt1.1 armhf 1.1.35-1 [221 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf mummer armhf 3.23+dfsg-7 [618 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf ncbi-data all 6.1.20170106+dfsg1-10 [3557 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf ncbi-blast+ armhf 2.12.0+ds-3+b2 [9948 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf python-matplotlib-data all 3.5.2-4 [2725 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.10.6-1 [1060 B]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf python3.10-dev armhf 3.10.8-3 [509 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.10.6-1 [25.4 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf python3-all-dev armhf 3.10.6-1 [1068 B]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf python3-appdirs all 1.4.4-3 [13.0 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf python3-attr all 22.1.0-1 [64.1 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 65.5.0-1 [278 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.21.5-2 [3409 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf python3-renderpm armhf 3.6.11-1 [69.9 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf python3-reportlab-accel armhf 3.6.11-1 [41.3 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf python3-tk armhf 3.10.8-1 [101 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf python3-pil.imagetk armhf 9.2.0-1.1 [71.8 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf python3-pil armhf 9.2.0-1.1 [427 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf python3-reportlab all 3.6.11-1 [566 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf w3c-sgml-lib all 1.3-3 [273 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf python3-biopython armhf 1.80+dfsg-1 [1568 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf python3-brotli armhf 1.0.9-2+b2 [278 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf python3-cycler all 0.11.0-1 [8020 B]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf python3-six all 1.16.0-4 [17.5 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf python3-dateutil all 2.8.2-1 [78.2 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf python3-decorator all 5.1.1-2 [16.5 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf python3-scipy armhf 1.8.1-14+rpi1 [12.9 MB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf python3-ufolib2 all 0.13.1+dfsg1-1 [32.0 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf python3-mpmath all 1.2.1-2 [418 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf python3-sympy all 1.11.1-1 [4358 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf python3-tz all 2022.6-1 [31.8 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf python3-fs all 2.4.16-2 [95.2 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf python3-lxml armhf 4.9.1-1 [959 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf python3-lz4 armhf 4.0.2+dfsg-1 [23.9 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf python3-unicodedata2 armhf 14.0.0+ds2-1 [298 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf unicode-data all 15.0.0-1 [7984 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf python3-fonttools armhf 4.37.4-1 [983 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf python3-kiwisolver armhf 1.3.2-1+b1 [52.1 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf python3-pyparsing all 3.0.7-3 [136 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf python3-packaging all 21.3-1.1 [34.2 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf python3-matplotlib armhf 3.5.2-4 [6479 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf python3-more-itertools all 8.10.0-2 [53.0 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas-lib armhf 1.3.5+dfsg-6 [2906 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas all 1.3.5+dfsg-6 [2646 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf python3-pluggy all 1.0.0+repack-1 [19.7 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf python3-py all 1.11.0-1 [89.2 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf python3-tomli all 2.0.1-2 [17.9 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest all 7.1.2-4 [218 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf python3-seaborn all 0.12.1-1 [213 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 65.5.0-1 [519 kB]
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Setting up media-types (8.0.0) ...
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Setting up libglib2.0-0:armhf (2.74.1-2) ...
No schema files found: doing nothing.
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Setting up libdebhelper-perl (13.11.1) ...
Setting up libbrotli1:armhf (1.0.9-2+b2) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
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Setting up libdeflate0:armhf (1.14-1) ...
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Setting up libqhull-r8.0:armhf (2020.2-5) ...
Setting up file (1:5.41-4) ...
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Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up unicode-data (15.0.0-1) ...
Setting up libfontenc1:armhf (1:1.1.4-1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libexpat1-dev:armhf (2.5.0-1) ...
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Setting up libmbedcrypto7:armhf (2.28.1-1) ...
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Setting up libimagequant0:armhf (2.17.0-1) ...
Setting up libpng16-16:armhf (1.6.39-2) ...
Setting up libatomic1:armhf (12.2.0-9+rpi1) ...
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Setting up mount (2.38.1-4) ...
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Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up python-matplotlib-data (3.5.2-4) ...
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Setting up libcc1-0:armhf (12.2.0-9+rpi1) ...
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up liblapack3:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.15-1) ...
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Setting up libmbedx509-1:armhf (2.28.1-1) ...
Setting up libmbedtls14:armhf (2.28.1-1) ...
Setting up libtool (2.4.7-5) ...
Setting up fontconfig-config (2.13.1-4.5) ...
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Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up libpython3.10-stdlib:armhf (3.10.8-3) ...
Setting up dh-autoreconf (20) ...
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Setting up libfreetype6:armhf (2.12.1+dfsg-3) ...
Setting up libgcc-12-dev:armhf (12.2.0-9+rpi1) ...
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Setting up python3 (3.10.6-1) ...
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Setting up man-db (2.11.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-tz (2022.6-1) ...
Setting up ncbi-blast+ (2.12.0+ds-3+b2) ...
Setting up python3-six (1.16.0-4) ...
Setting up python3-decorator (5.1.1-2) ...
Setting up python3-pyparsing (3.0.7-3) ...
Setting up gcc-12 (12.2.0-9+rpi1) ...
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Setting up python3-cycler (0.11.0-1) ...
Setting up python3-reportlab-accel:armhf (3.6.11-1) ...
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Setting up libpython3.10-dev:armhf (3.10.8-3) ...
Setting up python3-pluggy (1.0.0+repack-1) ...
Setting up python3.10-dev (3.10.8-3) ...
Setting up python3-lxml:armhf (4.9.1-1) ...
Setting up python3-dateutil (2.8.2-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up python3-mpmath (1.2.1-2) ...
Setting up python3-lib2to3 (3.10.8-1) ...
Setting up python3-appdirs (1.4.4-3) ...
Setting up g++-12 (12.2.0-9+rpi1) ...
Setting up python3-pkg-resources (65.5.0-1) ...
Setting up python3-distutils (3.10.8-1) ...
Setting up dh-python (5.20220819+rpi1) ...
Setting up python3-more-itertools (8.10.0-2) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up python3-sympy (1.11.1-1) ...
Setting up python3-attr (22.1.0-1) ...
Setting up libpython3-dev:armhf (3.10.6-1) ...
Setting up python3-setuptools (65.5.0-1) ...
Setting up python3-tomli (2.0.1-2) ...
Setting up python3-py (1.11.0-1) ...
Setting up python3-lz4 (4.0.2+dfsg-1) ...
Setting up python3-unicodedata2 (14.0.0+ds2-1) ...
Setting up python3-all (3.10.6-1) ...
Setting up debhelper (13.11.1) ...
Setting up fonts-urw-base35 (20200910-6) ...
Setting up python3-fs (2.4.16-2) ...
Setting up python3-pil:armhf (9.2.0-1.1) ...
Setting up python3-packaging (21.3-1.1) ...
Setting up libpython3-all-dev:armhf (3.10.6-1) ...
Setting up python3-dev (3.10.6-1) ...
Setting up python3-numpy (1:1.21.5-2) ...
Setting up python3-reportlab (3.6.11-1) ...
Setting up python3-all-dev (3.10.6-1) ...
Setting up python3-scipy (1.8.1-14+rpi1) ...
Setting up python3-renderpm:armhf (3.6.11-1) ...
Setting up python3-pytest (7.1.2-4) ...
Setting up python3-pandas-lib:armhf (1.3.5+dfsg-6) ...
Setting up python3-pandas (1.3.5+dfsg-6) ...
Setting up python3-ufolib2 (0.13.1+dfsg1-1) ...
Setting up python3-fonttools (4.37.4-1) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.13.1-4.5) ...
Setting up w3c-sgml-lib (1.3-3) ...
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libtk8.6:armhf (8.6.13-1) ...
Processing triggers for libc-bin (2.35-2+rpi1) ...
Setting up python3-biopython (1.80+dfsg-1) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ...
Setting up blt (2.5.3+dfsg-4.1) ...
Setting up python3-tk:armhf (3.10.8-1) ...
Setting up python3-pil.imagetk:armhf (9.2.0-1.1) ...
Setting up python3-matplotlib (3.5.2-4) ...
Setting up python3-seaborn (0.12.1-1) ...
Setting up sbuild-build-depends-python-pyani-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.35-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.39-6+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-9+rpi1 gcc-12_12.2.0-9+rpi1 libc6-dev_2.35-2+rpi1 libstdc++-12-dev_12.2.0-9+rpi1 libstdc++6_12.2.0-9+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 apt_2.5.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2~rc2-2 binutils_2.39-6+rpi1 binutils-arm-linux-gnueabihf_2.39-6+rpi1 binutils-common_2.39-6+rpi1 blt_2.5.3+dfsg-4.1 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-9+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.11.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-python_5.20220819+rpi1 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-1 dirmngr_2.2.39-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 fontconfig-config_2.13.1-4.5 fonts-dejavu-core_2.37-2 fonts-lyx_2.3.6.1-1 fonts-urw-base35_20200910-6 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-9+rpi1 gawk_1:5.1.0-1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-9+rpi1 gcc-12-base_12.2.0-9+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-10 gettext-base_0.21-10 gnupg_2.2.39-1 gnupg-l10n_2.2.39-1 gnupg-utils_2.2.39-1 gpg_2.2.39-1 gpg-agent_2.2.39-1 gpg-wks-client_2.2.39-1 gpg-wks-server_2.2.39-1 gpgconf_2.2.39-1 gpgsm_2.2.39-1 gpgv_2.2.39-1 grep_3.7-1 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20211215-1 krb5-locales_1.20-1 libacl1_2.3.1-1 libapt-pkg6.0_2.5.3 libarchive-zip-perl_1.68-1 libasan8_12.2.0-9+rpi1 libassuan0_2.5.5-4 libatomic1_12.2.0-9+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libbinutils_2.39-6+rpi1 libblas3_3.10.1-2 libblkid1_2.38.1-4 libbrotli1_1.0.9-2+b2 libbsd0_0.11.7-1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.35-2+rpi1 libc-dev-bin_2.35-2+rpi1 libc6_2.35-2+rpi1 libc6-dev_2.35-2+rpi1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-9+rpi1 libcom-err2_1.46.6~rc1-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.39-6+rpi1 libctf0_2.39-6+rpi1 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.11.1 libdeflate0_1.14-1 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-2+rpi2 libexpat1_2.5.0-1 libexpat1-dev_2.5.0-1 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-2 libfontconfig1_2.13.1-4.5 libfontenc1_1:1.1.4-1 libfreetype6_2.12.1+dfsg-3 libfribidi0_1.0.8-2.1 libgcc-12-dev_12.2.0-9+rpi1 libgcc-s1_12.2.0-9+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_12.2.0-9+rpi1 libglib2.0-0_2.74.1-2 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-2 libgomp1_12.2.0-9+rpi1 libgpg-error0_1.45-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20-1 libharfbuzz0b_5.2.0-2+b1 libhogweed6_3.8.1-2 libicu72_72.1-3 libidn2-0_2.3.3-1 libimagequant0_2.17.0-1 libisl23_0.25-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.1.2-1 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-jquery-ui_1.13.2+dfsg-1 libjs-sphinxdoc_4.5.0-4 libjs-underscore_1.13.4~dfsg+~1.11.4-2 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 liblapack3_3.10.1-2 liblbfgsb0_3.0+dfsg.3-11 liblcms2-2_2.13.1-1 libldap-2.5-0_2.5.13+dfsg-2+rpi1 liblerc4_4.0.0+ds-2 liblmdb0_0.9.24-1 liblz4-1_1.9.4-1+rpi1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmbedcrypto7_2.28.1-1 libmbedtls14_2.28.1-1 libmbedx509-1_2.28.1-1 libmd0_1.0.4-2 libmount1_2.38.1-4 libmpc3_1.2.1-2 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libopenjp2-7_2.5.0-1 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpcre2-8-0_10.40-1+b2 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libperl5.36_5.36.0-4 libpipeline1_1.5.7-1 libpng16-16_1.6.39-2 libpython3-all-dev_3.10.6-1 libpython3-dev_3.10.6-1 libpython3-stdlib_3.10.6-1 libpython3.10_3.10.8-3 libpython3.10-dev_3.10.8-3 libpython3.10-minimal_3.10.8-3 libpython3.10-stdlib_3.10.8-3 libqhull-r8.0_2020.2-5 libraqm0_0.7.0-4 libreadline8_8.2-1 libsasl2-2_2.1.28+dfsg-8 libsasl2-modules-db_2.1.28+dfsg-8 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsigsegv2_2.14-1 libsmartcols1_2.38.1-4 libsqlite3-0_3.39.4-1 libss2_1.46.6~rc1-1 libssl1.1_1.1.1o-1 libssl3_3.0.5-4 libstdc++-12-dev_12.2.0-9+rpi1 libstdc++6_12.2.0-9+rpi1 libsub-override-perl_0.09-4 libsystemd0_251.5-1+rpi1 libtasn1-6_4.19.0-2 libtcl8.6_8.6.13+dfsg-1 libtiff5_4.4.0-6 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtk8.6_8.6.13-1 libtool_2.4.7-5 libubsan1_12.2.0-9+rpi1 libuchardet0_0.0.7-1 libudev1_251.5-1+rpi1 libunistring2_1.0-2 libuuid1_2.38.1-4 libwebp7_1.2.2-2+b1 libwebpdemux2_1.2.2-2+b1 libwebpmux3_1.2.2-2+b1 libx11-6_2:1.8.1-2 libx11-data_2:1.8.1-2 libxau6_1:1.0.9-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1.1 libxrender1_1:0.9.10-1.1 libxslt1.1_1.1.35-1 libxss1_1:1.2.3-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.6-1+rpi1 login_1:4.12.3+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-1 mailcap_3.70+nmu1 make_4.3-4.1 man-db_2.11.1-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mime-support_3.66 mount_2.38.1-4 mummer_3.23+dfsg-7 nano_6.4-1 ncbi-blast+_2.12.0+ds-3+b2 ncbi-data_6.1.20170106+dfsg1-10 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 passwd_1:4.12.3+dfsg1-1 patch_2.7.6-7 perl_5.36.0-4 perl-base_5.36.0-4 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-4 pinentry-curses_1.2.0-2 po-debconf_1.0.21+nmu1 python-matplotlib-data_3.5.2-4 python3_3.10.6-1 python3-all_3.10.6-1 python3-all-dev_3.10.6-1 python3-appdirs_1.4.4-3 python3-attr_22.1.0-1 python3-biopython_1.80+dfsg-1 python3-brotli_1.0.9-2+b2 python3-cycler_0.11.0-1 python3-dateutil_2.8.2-1 python3-decorator_5.1.1-2 python3-dev_3.10.6-1 python3-distutils_3.10.8-1 python3-fonttools_4.37.4-1 python3-fs_2.4.16-2 python3-iniconfig_1.1.1-2 python3-kiwisolver_1.3.2-1+b1 python3-lib2to3_3.10.8-1 python3-lxml_4.9.1-1 python3-lz4_4.0.2+dfsg-1 python3-matplotlib_3.5.2-4 python3-minimal_3.10.6-1 python3-more-itertools_8.10.0-2 python3-mpmath_1.2.1-2 python3-numpy_1:1.21.5-2 python3-packaging_21.3-1.1 python3-pandas_1.3.5+dfsg-6 python3-pandas-lib_1.3.5+dfsg-6 python3-pil_9.2.0-1.1 python3-pil.imagetk_9.2.0-1.1 python3-pkg-resources_65.5.0-1 python3-pluggy_1.0.0+repack-1 python3-py_1.11.0-1 python3-pyparsing_3.0.7-3 python3-pytest_7.1.2-4 python3-renderpm_3.6.11-1 python3-reportlab_3.6.11-1 python3-reportlab-accel_3.6.11-1 python3-scipy_1.8.1-14+rpi1 python3-seaborn_0.12.1-1 python3-setuptools_65.5.0-1 python3-six_1.16.0-4 python3-sympy_1.11.1-1 python3-tk_3.10.8-1 python3-tomli_2.0.1-2 python3-tz_2022.6-1 python3-ufolib2_0.13.1+dfsg1-1 python3-unicodedata2_14.0.0+ds2-1 python3.10_3.10.8-3 python3.10-dev_3.10.8-3 python3.10-minimal_3.10.8-3 raspbian-archive-keyring_20120528.2 readline-common_8.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-pyani-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 sysvinit-utils_3.05-6 tar_1.34+dfsg-1 tk8.6-blt2.5_2.5.3+dfsg-4.1 tzdata_2022d-1 ucf_3.0043 unicode-data_15.0.0-1 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 w3c-sgml-lib_1.3-3 x11-common_1:7.7+23 xfonts-encodings_1:1.0.4-2.1 xfonts-utils_1:7.7+6 xml-core_0.18+nmu1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.lNF2mqPx/trustedkeys.kbx': General error
gpgv: Signature made Sat Dec  3 18:22:25 2022 UTC
gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv:                issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./python-pyani_0.2.12-2.dsc
dpkg-source: info: extracting python-pyani in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-pyani_0.2.12.orig.tar.gz
dpkg-source: info: unpacking python-pyani_0.2.12-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying pytest.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-8e17f255-3b87-4a45-be3c-20e6b7743fed
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package python-pyani
dpkg-buildpackage: info: source version 0.2.12-2
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --with python3 --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:240: python3.10 setup.py clean 
/usr/lib/python3/dist-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
  warnings.warn(
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.10' does not exist -- can't clean it
rm -f pyani.egg-info/PKG-INFO pyani.egg-info/SOURCES.txt pyani.egg-info/dependency_links.txt pyani.egg-info/requires.txt pyani.egg-info/top_level.txt
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:240: python3.10 setup.py config 
/usr/lib/python3/dist-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
  warnings.warn(
running config
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py build 
/usr/lib/python3/dist-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
  warnings.warn(
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani
copying pyani/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani
copying pyani/anib.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani
copying pyani/anim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani
copying pyani/pyani_config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani
copying pyani/pyani_files.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani
copying pyani/pyani_graphics.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani
copying pyani/pyani_jobs.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani
copying pyani/pyani_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani
copying pyani/run_multiprocessing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani
copying pyani/run_sge.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani
copying pyani/tetra.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani
running egg_info
creating pyani.egg-info
writing pyani.egg-info/PKG-INFO
writing dependency_links to pyani.egg-info/dependency_links.txt
writing requirements to pyani.egg-info/requires.txt
writing top-level names to pyani.egg-info/top_level.txt
writing manifest file 'pyani.egg-info/SOURCES.txt'
reading manifest file 'pyani.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'pyani.egg-info/SOURCES.txt'
running build_scripts
creating build
creating build/scripts-3.10
copying and adjusting bin/average_nucleotide_identity.py -> build/scripts-3.10
copying and adjusting bin/genbank_get_genomes_by_taxon.py -> build/scripts-3.10
copying and adjusting bin/delta_filter_wrapper.py -> build/scripts-3.10
changing mode of build/scripts-3.10/average_nucleotide_identity.py from 644 to 755
changing mode of build/scripts-3.10/genbank_get_genomes_by_taxon.py from 644 to 755
changing mode of build/scripts-3.10/delta_filter_wrapper.py from 644 to 755
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:240: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build; python3.10 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.10.8, pytest-7.1.2, pluggy-1.0.0+repack
rootdir: /<<PKGBUILDDIR>>
collected 56 items

tests/test_anib.py sss.....sss...ss                                      [ 28%]
tests/test_anim.py ......                                                [ 39%]
tests/test_concordance.py .s..                                           [ 46%]
tests/test_dependencies.py ......s.                                      [ 60%]
tests/test_graphics.py ......                                            [ 71%]
tests/test_jobs.py .........                                             [ 87%]
tests/test_multiprocessing.py ...                                        [ 92%]
tests/test_parsing.py .                                                  [ 94%]
tests/test_tetra.py ...                                                  [100%]

=============================== warnings summary ===============================
.pybuild/cpython3_3.10_pyani/build/tests/test_anib.py::TestParsing::test_blastdir_processing
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/tests/test_anib.py:513: FutureWarning: In a future version of pandas all arguments of DataFrame.sort_index will be keyword-only
    result.percentage_identity.sort_index(1).sort_index(),

.pybuild/cpython3_3.10_pyani/build/tests/test_anib.py::TestParsing::test_blastdir_processing
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/tests/test_anib.py:514: FutureWarning: In a future version of pandas all arguments of DataFrame.sort_index will be keyword-only
    self.anibtgt.sort_index(1).sort_index(),

.pybuild/cpython3_3.10_pyani/build/tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/tests/test_anim.py:221: FutureWarning: In a future version of pandas all arguments of DataFrame.sort_index will be keyword-only
    result.percentage_identity.sort_index(1).sort_index(),

.pybuild/cpython3_3.10_pyani/build/tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/tests/test_anim.py:222: FutureWarning: In a future version of pandas all arguments of DataFrame.sort_index will be keyword-only
    self.df_pid.sort_index(1).sort_index(),

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
============ 46 passed, 10 skipped, 4 warnings in 765.07s (0:12:45) ============
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=pybuild
   dh_prep -a -O--buildsystem=pybuild
   dh_auto_install --destdir=debian/python3-pyani/ -a -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-pyani 
/usr/lib/python3/dist-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
  warnings.warn(
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
  warnings.warn(
running build
running build_py
running egg_info
writing pyani.egg-info/PKG-INFO
writing dependency_links to pyani.egg-info/dependency_links.txt
writing requirements to pyani.egg-info/requires.txt
writing top-level names to pyani.egg-info/top_level.txt
reading manifest file 'pyani.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'pyani.egg-info/SOURCES.txt'
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani/anib.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani/anim.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani/pyani_config.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani/pyani_files.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani/pyani_graphics.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani/pyani_jobs.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani/pyani_tools.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani/run_multiprocessing.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani/run_sge.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani/tetra.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani/__pycache__/__init__.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani/__pycache__/anib.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani/__pycache__/pyani_config.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani/__pycache__/pyani_files.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani/__pycache__/pyani_jobs.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani/__pycache__/pyani_tools.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani/__pycache__/anim.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani/__pycache__/run_multiprocessing.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani/__pycache__/tetra.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pyani/build/pyani/__pycache__/pyani_graphics.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani/__pycache__
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani/anib.py to anib.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani/anim.py to anim.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani/pyani_config.py to pyani_config.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani/pyani_files.py to pyani_files.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani/pyani_graphics.py to pyani_graphics.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani/pyani_jobs.py to pyani_jobs.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani/pyani_tools.py to pyani_tools.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani/run_multiprocessing.py to run_multiprocessing.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani/run_sge.py to run_sge.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani/tetra.py to tetra.cpython-310.pyc
running install_egg_info
Copying pyani.egg-info to /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.10/dist-packages/pyani-0.2.12.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin
copying build/scripts-3.10/average_nucleotide_identity.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin
copying build/scripts-3.10/genbank_get_genomes_by_taxon.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin
copying build/scripts-3.10/delta_filter_wrapper.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin/average_nucleotide_identity.py to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin/genbank_get_genomes_by_taxon.py to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin/delta_filter_wrapper.py to 755
   dh_installdocs -a -O--buildsystem=pybuild
   dh_installchangelogs -a -O--buildsystem=pybuild
   debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installman --language=C
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_python3 -a -O--buildsystem=pybuild
   dh_installsystemduser -a -O--buildsystem=pybuild
   dh_lintian -a -O--buildsystem=pybuild
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_strip_nondeterminism -a -O--buildsystem=pybuild
   dh_compress -a -O--buildsystem=pybuild
   dh_fixperms -a -O--buildsystem=pybuild
   dh_missing -a -O--buildsystem=pybuild
   dh_dwz -a -O--buildsystem=pybuild
   dh_strip -a -O--buildsystem=pybuild
   dh_makeshlibs -a -O--buildsystem=pybuild
   dh_shlibdeps -a -O--buildsystem=pybuild
   dh_installdeb -a -O--buildsystem=pybuild
   dh_gencontrol -a -O--buildsystem=pybuild
   dh_md5sums -a -O--buildsystem=pybuild
   dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pyani' in '../python3-pyani_0.2.12-2_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../python-pyani_0.2.12-2_armhf.buildinfo
 dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../python-pyani_0.2.12-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-12-06T19:54:40Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


python-pyani_0.2.12-2_armhf.changes:
------------------------------------

Format: 1.8
Date: Sat, 03 Dec 2022 18:51:23 +0100
Source: python-pyani
Binary: python3-pyani
Architecture: armhf
Version: 0.2.12-2
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
 python3-pyani - Python3 module for average nucleotide identity analyses
Closes: 1018559
Changes:
 python-pyani (0.2.12-2) unstable; urgency=medium
 .
   [ Andreas Tille ]
   * Proper filename for download tarball
 .
   [ Étienne Mollier ]
   * d/control: move from nose to pytest.
   * d/t/control: move from nose to pytest.
   * d/t/run-unit-test: replace nosetests by pytest.
   * pytest.patch: migrate from nose to pytest. (Closes: #1018559)
   * d/t/run-unit-test: run against all supported python versions.
   * d/control: add myself to uploaders.
   * d/control: restore python3-all-dev now that python-biopython 1.80 is built
     for python3.11.
   * d/copyright: bump copyright year.
   * d/t/control: ensure all python3 versions are present in autopkgtest.
Checksums-Sha1:
 84280bdd174f40d6d9c163b96ed4e6113e57d971 8751 python-pyani_0.2.12-2_armhf.buildinfo
 749be88a8d32000a2b008b850665abc022f09bfb 48108 python3-pyani_0.2.12-2_armhf.deb
Checksums-Sha256:
 8e6bfb624d6beea1f635d8d8762bad67e272ca40b711fb735dbd3c24cc5f13b8 8751 python-pyani_0.2.12-2_armhf.buildinfo
 8f0d1c6d403a7bc49b3407902557bf13322d978f5908105c40fa3047bc23d95f 48108 python3-pyani_0.2.12-2_armhf.deb
Files:
 7f276dc3a4b440d137af1717eeb62c1f 8751 science optional python-pyani_0.2.12-2_armhf.buildinfo
 3d4b90fe6b3d176d481001b66c97c948 48108 python optional python3-pyani_0.2.12-2_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


python3-pyani_0.2.12-2_armhf.deb
--------------------------------

 new Debian package, version 2.0.
 size 48108 bytes: control archive=1816 bytes.
     841 bytes,    17 lines      control              
    2017 bytes,    24 lines      md5sums              
     273 bytes,    12 lines   *  postinst             #!/bin/sh
     386 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: python3-pyani
 Source: python-pyani
 Version: 0.2.12-2
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 207
 Depends: python3-biopython, python3-matplotlib, python3-pandas, python3-scipy, python3-seaborn, python3:any, python3-setuptools, mummer, ncbi-blast+
 Section: python
 Priority: optional
 Homepage: https://github.com/widdowquinn/pyani
 Description: Python3 module for average nucleotide identity analyses
  Pyani is a Python3 module and script that provides support for
  calculating average nucleotide identity (ANI) and related measures for
  whole genome comparisons, and rendering relevant graphical summary
  output. Where available, it takes advantage of multicore systems, and
  can integrate with SGE/OGE-type job schedulers for the sequence
  comparisons.

drwxr-xr-x root/root         0 2022-12-03 17:51 ./
drwxr-xr-x root/root         0 2022-12-03 17:51 ./usr/
drwxr-xr-x root/root         0 2022-12-03 17:51 ./usr/bin/
-rwxr-xr-x root/root     36576 2022-12-03 17:51 ./usr/bin/average_nucleotide_identity.py
-rwxr-xr-x root/root      2690 2022-12-03 17:51 ./usr/bin/delta_filter_wrapper.py
-rwxr-xr-x root/root     27037 2022-12-03 17:51 ./usr/bin/genbank_get_genomes_by_taxon.py
drwxr-xr-x root/root         0 2022-12-03 17:51 ./usr/lib/
drwxr-xr-x root/root         0 2022-12-03 17:51 ./usr/lib/python3/
drwxr-xr-x root/root         0 2022-12-03 17:51 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2022-12-03 17:51 ./usr/lib/python3/dist-packages/pyani-0.2.12.egg-info/
-rw-r--r-- root/root     20502 2022-12-03 17:51 ./usr/lib/python3/dist-packages/pyani-0.2.12.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2022-12-03 17:51 ./usr/lib/python3/dist-packages/pyani-0.2.12.egg-info/dependency_links.txt
-rw-r--r-- root/root         0 2022-12-03 17:51 ./usr/lib/python3/dist-packages/pyani-0.2.12.egg-info/requires.txt
-rw-r--r-- root/root         6 2022-12-03 17:51 ./usr/lib/python3/dist-packages/pyani-0.2.12.egg-info/top_level.txt
drwxr-xr-x root/root         0 2022-12-03 17:51 ./usr/lib/python3/dist-packages/pyani/
-rw-r--r-- root/root       116 2022-05-18 21:29 ./usr/lib/python3/dist-packages/pyani/__init__.py
-rw-r--r-- root/root     21988 2022-05-18 21:29 ./usr/lib/python3/dist-packages/pyani/anib.py
-rw-r--r-- root/root      9522 2022-05-18 21:29 ./usr/lib/python3/dist-packages/pyani/anim.py
-rw-r--r-- root/root      5789 2022-05-18 21:29 ./usr/lib/python3/dist-packages/pyani/pyani_config.py
-rw-r--r-- root/root      1664 2022-05-18 21:29 ./usr/lib/python3/dist-packages/pyani/pyani_files.py
-rw-r--r-- root/root     14135 2022-05-18 21:29 ./usr/lib/python3/dist-packages/pyani/pyani_graphics.py
-rw-r--r-- root/root      7157 2022-05-18 21:29 ./usr/lib/python3/dist-packages/pyani/pyani_jobs.py
-rw-r--r-- root/root      6905 2022-05-18 21:29 ./usr/lib/python3/dist-packages/pyani/pyani_tools.py
-rw-r--r-- root/root      3249 2022-05-18 21:29 ./usr/lib/python3/dist-packages/pyani/run_multiprocessing.py
-rw-r--r-- root/root      9985 2022-05-18 21:29 ./usr/lib/python3/dist-packages/pyani/run_sge.py
-rw-r--r-- root/root      6239 2022-05-18 21:29 ./usr/lib/python3/dist-packages/pyani/tetra.py
drwxr-xr-x root/root         0 2022-12-03 17:51 ./usr/share/
drwxr-xr-x root/root         0 2022-12-03 17:51 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-12-03 17:51 ./usr/share/doc/python3-pyani/
-rw-r--r-- root/root      1009 2022-12-03 17:51 ./usr/share/doc/python3-pyani/changelog.Debian.gz
-rw-r--r-- root/root      2446 2022-05-18 21:29 ./usr/share/doc/python3-pyani/changelog.gz
-rw-r--r-- root/root      1361 2022-12-03 17:51 ./usr/share/doc/python3-pyani/copyright
drwxr-xr-x root/root         0 2022-12-03 17:51 ./usr/share/lintian/
drwxr-xr-x root/root         0 2022-12-03 17:51 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       110 2022-12-03 17:51 ./usr/share/lintian/overrides/python3-pyani
drwxr-xr-x root/root         0 2022-12-03 17:51 ./usr/share/man/
drwxr-xr-x root/root         0 2022-12-03 17:51 ./usr/share/man/man1/
-rw-r--r-- root/root      1575 2022-12-03 17:51 ./usr/share/man/man1/average_nucleotide_identity.py.1.gz
-rw-r--r-- root/root       756 2022-12-03 17:51 ./usr/share/man/man1/genbank_get_genomes_by_taxon.py.1.gz


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 160584
Build-Time: 787
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 814
Job: python-pyani_0.2.12-2
Machine Architecture: armhf
Package: python-pyani
Package-Time: 1628
Source-Version: 0.2.12-2
Space: 160584
Status: successful
Version: 0.2.12-2
--------------------------------------------------------------------------------
Finished at 2022-12-06T19:54:40Z
Build needed 00:27:08, 160584k disk space
Raspbian Package Auto-Building

Build log for python-pyani (0.2.12-2) on armhf
