python-pyani →
0.2.11-1 →
armhf → 2021-08-21 16:19:23
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| python-pyani 0.2.11-1 (armhf) Sat, 21 Aug 2021 15:32:36 +0000 |
+==============================================================================+
Package: python-pyani
Version: 0.2.11-1
Source Version: 0.2.11-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-2f6a2071-7f4f-4a05-b7bf-0ec5c5fc84d6' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.3 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.3 MB]
Fetched 25.6 MB in 26s (995 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-pyani' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-pyani.git
Please use:
git clone https://salsa.debian.org/med-team/python-pyani.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 49.0 MB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main python-pyani 0.2.11-1 (dsc) [2338 B]
Get:2 http://172.17.0.1/private bookworm-staging/main python-pyani 0.2.11-1 (tar) [49.0 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main python-pyani 0.2.11-1 (diff) [5264 B]
Fetched 49.0 MB in 4s (11.6 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-pyani-dI7HBZ/python-pyani-0.2.11' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-pyani-dI7HBZ' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-aOOEay/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-aOOEay/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-aOOEay/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-aOOEay/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-aOOEay/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-aOOEay/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-aOOEay/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-aOOEay/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-aOOEay/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2909 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-aOOEay/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-aOOEay/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 5 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-aOOEay/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (23.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12488 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, python3-biopython, python3-matplotlib, python3-pandas, python3-scipy, python3-seaborn, mummer, ncbi-blast+, python3-nose
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, python3-biopython, python3-matplotlib, python3-pandas, python3-scipy, python3-seaborn, mummer, ncbi-blast+, python3-nose
dpkg-deb: building package 'sbuild-build-depends-python-pyani-dummy' in '/<<BUILDDIR>>/resolver-aOOEay/apt_archive/sbuild-build-depends-python-pyani-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-pyani-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-aOOEay/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-aOOEay/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-aOOEay/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-aOOEay/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-aOOEay/apt_archive ./ Sources [582 B]
Get:5 copy:/<<BUILDDIR>>/resolver-aOOEay/apt_archive ./ Packages [646 B]
Fetched 2561 B in 1s (3503 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-aOOEay/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-aOOEay/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install python-pyani build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev blt bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config
fonts-lyx gawk gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libblas3 libbrotli1 libbsd0 libdebhelper-perl
libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libfontconfig1 libfreetype6 libgfortran5 libicu67 libimagequant0 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc
libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblmdb0 libmagic-mgc
libmagic1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libmpdec3
libpipeline1 libpng16-16 libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib
libsigsegv2 libsub-override-perl libtcl8.6 libtiff5 libtk8.6 libtool
libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 m4 mailcap
man-db media-types mime-support mummer ncbi-blast+ ncbi-data po-debconf
python-matplotlib-data python3 python3-all python3-all-dev python3-biopython
python3-cycler python3-dateutil python3-decorator python3-dev
python3-distutils python3-kiwisolver python3-lib2to3 python3-matplotlib
python3-minimal python3-nose python3-numpy python3-pandas python3-pandas-lib
python3-pil python3-pkg-resources python3-pyparsing python3-reportlab
python3-reportlab-accel python3-scipy python3-seaborn python3-setuptools
python3-six python3-tk python3-tz python3.9 python3.9-dev python3.9-minimal
sensible-utils tk8.6-blt2.5 ttf-bitstream-vera ucf x11-common zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc blt-demo dh-make gawk-doc
gettext-doc libasprintf-dev libgettextpo-dev groff libjs-jquery-ui-docs
liblcms2-utils tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler
gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc
python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle
phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib
python3-renderpm python3-psycopg2 raxml samtools t-coffee wise w3-dtd-mathml
python-cycler-doc dvipng ffmpeg ghostscript gir1.2-gtk-3.0 inkscape ipython3
librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi
python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado
texlive-extra-utils texlive-latex-extra ttf-staypuft python-nose-doc
gfortran python-numpy-doc python3-numpy-dbg python3-pytest python-pandas-doc
python3-statsmodels python-pil-doc python3-pil-dbg python-pyparsing-doc
pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python-scipy-doc
python-setuptools-doc tix python3-tk-dbg python3.9-venv python3.9-doc
binfmt-support
Recommended packages:
curl | wget | lynx libarchive-cpio-perl javascript-common ca-certificates
libltdl-dev libmail-sendmail-perl python-biopython-doc python3-bottleneck
python3-numexpr python3-odf python3-openpyxl python3-xlwt python3-bs4
python3-html5lib python3-lxml python3-tables python3-jinja2 python3-olefile
python3-renderpm python3-patsy
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev blt bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config
fonts-lyx gawk gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libblas3 libbrotli1 libbsd0 libdebhelper-perl
libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libfontconfig1 libfreetype6 libgfortran5 libicu67 libimagequant0 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc
libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblmdb0 libmagic-mgc
libmagic1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libmpdec3
libpipeline1 libpng16-16 libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib
libsigsegv2 libsub-override-perl libtcl8.6 libtiff5 libtk8.6 libtool
libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 m4 mailcap
man-db media-types mime-support mummer ncbi-blast+ ncbi-data po-debconf
python-matplotlib-data python3 python3-all python3-all-dev python3-biopython
python3-cycler python3-dateutil python3-decorator python3-dev
python3-distutils python3-kiwisolver python3-lib2to3 python3-matplotlib
python3-minimal python3-nose python3-numpy python3-pandas python3-pandas-lib
python3-pil python3-pkg-resources python3-pyparsing python3-reportlab
python3-reportlab-accel python3-scipy python3-seaborn python3-setuptools
python3-six python3-tk python3-tz python3.9 python3.9-dev python3.9-minimal
sbuild-build-depends-python-pyani-dummy sensible-utils tk8.6-blt2.5
ttf-bitstream-vera ucf x11-common zlib1g-dev
0 upgraded, 128 newly installed, 0 to remove and 5 not upgraded.
Need to get 83.1 MB of archives.
After this operation, 341 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-aOOEay/apt_archive ./ sbuild-build-depends-python-pyani-dummy 0.invalid.0 [932 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.36.1-8 [137 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-6 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf gawk armhf 1:5.1.0-1 [533 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.2-1+rpi1 [791 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.2.10-2 [73.4 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.2-1+rpi1 [1625 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf media-types all 4.0.0 [30.3 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf mailcap all 3.69 [31.7 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-1+rpi1 [73.4 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.2-1+rpi1 [1616 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf python3.9 armhf 3.9.2-1+rpi1 [466 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf python3 armhf 3.9.2-3 [37.9 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.14 [14.8 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.69-14 [313 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.3-2 [814 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.11+dfsg-1 [894 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [353 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf ttf-bitstream-vera all 1.10-8.1 [223 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf libmd0 armhf 1.0.3-3 [27.2 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-1 [311 kB]
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Get:46 http://172.17.0.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.3-1.1 [47.8 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf x11-common all 1:7.7+22 [252 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.11-2 [681 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [477 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.3.4 [189 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
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Get:61 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.183-1 [161 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [580 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.3.4 [1049 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.2-1 [77.8 kB]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf python3-distutils all 3.9.2-1 [143 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf dh-python all 4.20201102+nmu1 [99.4 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf fonts-lyx all 2.3.6-1 [205 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libdeflate0 armhf 1.7-1 [44.0 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.2.10-2 [121 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf libgfortran5 armhf 10.2.1-6+rpi1 [232 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [122 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf libjs-underscore all 1.9.1~dfsg-3 [100 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf libjs-sphinxdoc all 3.4.3-2 [127 kB]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:85 http://172.17.0.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-9 [24.6 kB]
Get:86 http://172.17.0.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.12~rc1-2 [121 kB]
Get:87 http://172.17.0.1/private bookworm-staging/main armhf liblmdb0 armhf 0.9.24-1 [38.7 kB]
Get:88 http://172.17.0.1/private bookworm-staging/main armhf libmbedcrypto3 armhf 2.16.9-0.1 [196 kB]
Get:89 http://172.17.0.1/private bookworm-staging/main armhf libmbedx509-0 armhf 2.16.9-0.1 [104 kB]
Get:90 http://172.17.0.1/private bookworm-staging/main armhf libmbedtls12 armhf 2.16.9-0.1 [132 kB]
Get:91 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.2-1+rpi1 [1413 kB]
Get:92 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-dev armhf 3.9.2-1+rpi1 [3055 kB]
Get:93 http://172.17.0.1/private bookworm-staging/main armhf libpython3-dev armhf 3.9.2-3 [21.7 kB]
Get:94 http://172.17.0.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.9.2-3 [1068 B]
Get:95 http://172.17.0.1/private bookworm-staging/main armhf libwebp6 armhf 0.6.1-2.1 [225 kB]
Get:96 http://172.17.0.1/private bookworm-staging/main armhf libtiff5 armhf 4.2.0-1 [268 kB]
Get:97 http://172.17.0.1/private bookworm-staging/main armhf libwebpdemux2 armhf 0.6.1-2.1 [86.8 kB]
Get:98 http://172.17.0.1/private bookworm-staging/main armhf libwebpmux3 armhf 0.6.1-2.1 [94.4 kB]
Get:99 http://172.17.0.1/private bookworm-staging/main armhf mummer armhf 3.23+dfsg-7 [618 kB]
Get:100 http://172.17.0.1/private bookworm-staging/main armhf ncbi-data all 6.1.20170106+dfsg1-9 [3556 kB]
Get:101 http://172.17.0.1/private bookworm-staging/main armhf ncbi-blast+ armhf 2.11.0+ds-1 [9360 kB]
Get:102 http://172.17.0.1/private bookworm-staging/main armhf python-matplotlib-data all 3.3.4-1 [4153 kB]
Get:103 http://172.17.0.1/private bookworm-staging/main armhf python3-all armhf 3.9.2-3 [1056 B]
Get:104 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:105 http://172.17.0.1/private bookworm-staging/main armhf python3.9-dev armhf 3.9.2-1+rpi1 [501 kB]
Get:106 http://172.17.0.1/private bookworm-staging/main armhf python3-dev armhf 3.9.2-3 [24.8 kB]
Get:107 http://172.17.0.1/private bookworm-staging/main armhf python3-all-dev armhf 3.9.2-3 [1064 B]
Get:108 http://172.17.0.1/private bookworm-staging/main armhf python3-pkg-resources all 52.0.0-4 [190 kB]
Get:109 http://172.17.0.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.19.5-1 [2930 kB]
Get:110 http://172.17.0.1/private bookworm-staging/main armhf python3-reportlab-accel armhf 3.5.59-2 [37.3 kB]
Get:111 http://172.17.0.1/private bookworm-staging/main armhf python3-pil armhf 8.1.2+dfsg-0.3 [410 kB]
Get:112 http://172.17.0.1/private bookworm-staging/main armhf python3-reportlab all 3.5.59-2 [575 kB]
Get:113 http://172.17.0.1/private bookworm-staging/main armhf python3-biopython armhf 1.78+dfsg-4 [1380 kB]
Get:114 http://172.17.0.1/private bookworm-staging/main armhf python3-six all 1.16.0-2 [17.5 kB]
Get:115 http://172.17.0.1/private bookworm-staging/main armhf python3-cycler all 0.10.0-3 [8084 B]
Get:116 http://172.17.0.1/private bookworm-staging/main armhf python3-dateutil all 2.8.1-6 [79.2 kB]
Get:117 http://172.17.0.1/private bookworm-staging/main armhf python3-decorator all 4.4.2-2 [15.8 kB]
Get:118 http://172.17.0.1/private bookworm-staging/main armhf python3-kiwisolver armhf 1.3.1-1 [272 kB]
Get:119 http://172.17.0.1/private bookworm-staging/main armhf python3-pyparsing all 2.4.7-1 [109 kB]
Get:120 http://172.17.0.1/private bookworm-staging/main armhf python3-matplotlib armhf 3.3.4-1 [4105 kB]
Get:121 http://172.17.0.1/private bookworm-staging/main armhf python3-nose all 1.3.7-7 [133 kB]
Get:122 http://172.17.0.1/private bookworm-staging/main armhf python3-tz all 2021.1-1 [34.8 kB]
Get:123 http://172.17.0.1/private bookworm-staging/main armhf python3-pandas-lib armhf 1.1.5+dfsg-2 [2863 kB]
Get:124 http://172.17.0.1/private bookworm-staging/main armhf python3-pandas all 1.1.5+dfsg-2 [2096 kB]
Get:125 http://172.17.0.1/private bookworm-staging/main armhf python3-scipy armhf 1.6.0-2 [11.1 MB]
Get:126 http://172.17.0.1/private bookworm-staging/main armhf python3-tk armhf 3.9.2-1 [97.5 kB]
Get:127 http://172.17.0.1/private bookworm-staging/main armhf python3-seaborn all 0.11.1-1 [206 kB]
Get:128 http://172.17.0.1/private bookworm-staging/main armhf python3-setuptools all 52.0.0-4 [366 kB]
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invoke-rc.d: could not determine current runlevel
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Setting up python3 (3.9.2-3) ...
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Not building database; man-db/auto-update is not 'true'.
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Processing triggers for libc-bin (2.31-13+rpi1) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35.2-2+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.2.1-6+rpi1 gcc-10_10.2.1-6+rpi1 libc6-dev_2.31-13+rpi1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.2.4 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1+rpi1 base-passwd_3.5.51 bash_5.1-2 binutils_2.35.2-2+rpi1 binutils-arm-linux-gnueabihf_2.35.2-2+rpi1 binutils-common_2.35.2-2+rpi1 blt_2.5.3+dfsg-4.1 bsdextrautils_2.36.1-8 bsdutils_1:2.36.1-8 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.2.1-6+rpi1 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.77 debhelper_13.3.4 debianutils_4.11.2 dh-autoreconf_20 dh-python_4.20201102+nmu1 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.2-2 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 fontconfig-config_2.13.1-4.2 fonts-lyx_2.3.6-1 g++_4:10.2.1-1+rpi1 g++-10_10.2.1-6+rpi1 gawk_1:5.1.0-1 gcc_4:10.2.1-1+rpi1 gcc-10_10.2.1-6+rpi1 gcc-10-base_10.2.1-6+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.3.0-22+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libapt-pkg6.0_2.2.4 libarchive-zip-perl_1.68-1 libasan6_10.2.1-6+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-6+rpi1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libbinutils_2.35.2-2+rpi1 libblas3_3.9.0-3 libblkid1_2.36.1-8 libbrotli1_1.0.9-2+b1 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-13+rpi1 libc-dev-bin_2.31-13+rpi1 libc6_2.31-13+rpi1 libc6-dev_2.31-13+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-6+rpi1 libcom-err2_1.46.2-2 libcrypt-dev_1:4.4.18-4 libcrypt1_1:4.4.18-4 libctf-nobfd0_2.35.2-2+rpi1 libctf0_2.35.2-2+rpi1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.3.4 libdeflate0_1.7-1 libdpkg-perl_1.20.9+rpi1 libelf1_0.183-1 libexpat1_2.2.10-2 libexpat1-dev_2.2.10-2 libext2fs2_1.46.2-2 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libfile-stripnondeterminism-perl_1.12.0-1 libfontconfig1_2.13.1-4.2 libfreetype6_2.10.4+dfsg-1 libgcc-10-dev_10.2.1-6+rpi1 libgcc-s1_10.2.1-6+rpi1 libgcrypt20_1.8.7-6 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgfortran5_10.2.1-6+rpi1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.1-5 libgomp1_10.2.1-6+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-6 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.0-5 libimagequant0_2.12.2-1.1 libisl23_0.23-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.0.6-4 libjs-jquery_3.5.1+dfsg+~3.5.5-7 libjs-jquery-ui_1.12.1+dfsg-8 libjs-sphinxdoc_3.4.3-2 libjs-underscore_1.9.1~dfsg-3 libk5crypto3_1.18.3-6 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-6 libkrb5support0_1.18.3-6 libksba8_1.5.0-3 liblapack3_3.9.0-3 liblbfgsb0_3.0+dfsg.3-9 liblcms2-2_2.12~rc1-2 libldap-2.4-2_2.4.57+dfsg-3 liblmdb0_0.9.24-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmbedcrypto3_2.16.9-0.1 libmbedtls12_2.16.9-0.1 libmbedx509-0_2.16.9-0.1 libmd0_1.0.3-3 libmount1_2.36.1-8 libmpc3_1.2.0-1 libmpdec3_2.5.1-1+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-2 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-9 libpam-modules-bin_1.4.0-9 libpam-runtime_1.4.0-9 libpam0g_1.4.0-9 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-4+deb11u1 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libpython3-all-dev_3.9.2-3 libpython3-dev_3.9.2-3 libpython3-stdlib_3.9.2-3 libpython3.9_3.9.2-1+rpi1 libpython3.9-dev_3.9.2-1+rpi1 libpython3.9-minimal_3.9.2-1+rpi1 libpython3.9-stdlib_3.9.2-1+rpi1 libreadline8_8.1-1 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.36.1-8 libsqlite3-0_3.34.1-3 libss2_1.46.2-2 libssl1.1_1.1.1k-1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.3-6+rpi1 libtasn1-6_4.16.0-2 libtcl8.6_8.6.11+dfsg-1 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtiff5_4.2.0-1 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtk8.6_8.6.11-2 libtool_2.4.6-15 libubsan1_10.2.1-6+rpi1 libuchardet0_0.0.7-1 libudev1_247.3-6+rpi1 libunistring2_0.9.10-4 libuuid1_2.36.1-8 libwebp6_0.6.1-2.1 libwebpdemux2_0.6.1-2.1 libwebpmux3_0.6.1-2.1 libx11-6_2:1.7.2-1 libx11-data_2:1.7.2-1 libxau6_1:1.0.9-1 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1.1 libxft2_2.3.2-2 libxml2_2.9.10+dfsg-6.7 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.2-2 lsb-base_11.1.0+rpi1 m4_1.4.18-5 mailcap_3.69 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 mime-support_3.66 mount_2.36.1-8 mummer_3.23+dfsg-7 ncbi-blast+_2.11.0+ds-1 ncbi-data_6.1.20170106+dfsg1-9 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 netbase_6.3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-4+deb11u1 perl-base_5.32.1-4+deb11u1 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python-matplotlib-data_3.3.4-1 python3_3.9.2-3 python3-all_3.9.2-3 python3-all-dev_3.9.2-3 python3-biopython_1.78+dfsg-4 python3-cycler_0.10.0-3 python3-dateutil_2.8.1-6 python3-decorator_4.4.2-2 python3-dev_3.9.2-3 python3-distutils_3.9.2-1 python3-kiwisolver_1.3.1-1 python3-lib2to3_3.9.2-1 python3-matplotlib_3.3.4-1 python3-minimal_3.9.2-3 python3-nose_1.3.7-7 python3-numpy_1:1.19.5-1 python3-pandas_1.1.5+dfsg-2 python3-pandas-lib_1.1.5+dfsg-2 python3-pil_8.1.2+dfsg-0.3 python3-pkg-resources_52.0.0-4 python3-pyparsing_2.4.7-1 python3-reportlab_3.5.59-2 python3-reportlab-accel_3.5.59-2 python3-scipy_1.6.0-2 python3-seaborn_0.11.1-1 python3-setuptools_52.0.0-4 python3-six_1.16.0-2 python3-tk_3.9.2-1 python3-tz_2021.1-1 python3.9_3.9.2-1+rpi1 python3.9-dev_3.9.2-1+rpi1 python3.9-minimal_3.9.2-1+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-pyani-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.14 sysvinit-utils_2.96-7 tar_1.34+dfsg-1 tk8.6-blt2.5_2.5.3+dfsg-4.1 ttf-bitstream-vera_1.10-8.1 tzdata_2021a-1 ucf_3.0043 util-linux_2.36.1-8 x11-common_1:7.7+22 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.QSzCsT3Y/trustedkeys.kbx': General error
gpgv: Signature made Mon Aug 16 18:25:43 2021 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-pyani_0.2.11-1.dsc
dpkg-source: info: extracting python-pyani in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-pyani_0.2.11.orig.tar.gz
dpkg-source: info: unpacking python-pyani_0.2.11-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-2f6a2071-7f4f-4a05-b7bf-0ec5c5fc84d6
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-pyani
dpkg-buildpackage: info: source version 0.2.11-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:232: python3.9 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
rm -f pyani.egg-info/PKG-INFO pyani.egg-info/SOURCES.txt pyani.egg-info/dependency_links.txt pyani.egg-info/requires.txt pyani.egg-info/top_level.txt
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani
copying pyani/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani
copying pyani/anib.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani
copying pyani/anim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani
copying pyani/pyani_config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani
copying pyani/pyani_files.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani
copying pyani/pyani_graphics.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani
copying pyani/pyani_jobs.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani
copying pyani/pyani_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani
copying pyani/run_multiprocessing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani
copying pyani/run_sge.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani
copying pyani/tetra.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani
running egg_info
creating pyani.egg-info
writing pyani.egg-info/PKG-INFO
writing dependency_links to pyani.egg-info/dependency_links.txt
writing requirements to pyani.egg-info/requires.txt
writing top-level names to pyani.egg-info/top_level.txt
writing manifest file 'pyani.egg-info/SOURCES.txt'
reading manifest file 'pyani.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pyani.egg-info/SOURCES.txt'
running build_scripts
creating build
creating build/scripts-3.9
copying and adjusting bin/average_nucleotide_identity.py -> build/scripts-3.9
copying and adjusting bin/genbank_get_genomes_by_taxon.py -> build/scripts-3.9
copying and adjusting bin/delta_filter_wrapper.py -> build/scripts-3.9
changing mode of build/scripts-3.9/average_nucleotide_identity.py from 644 to 755
changing mode of build/scripts-3.9/genbank_get_genomes_by_taxon.py from 644 to 755
changing mode of build/scripts-3.9/delta_filter_wrapper.py from 644 to 755
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build; python3.9 -m nose -v tests
generate BLAST+ db commands. ... ok
generate BLASTN+ commands. ... ok
generate dictionary of BLASTN+ database jobs. ... ok
generate BLASTN+ command-line. ... ok
create jobgraph for BLASTN+ jobs. ... ok
generate makeblastdb command-line. ... ok
fragment files for ANIb/ANIblastall. ... ok
parses directory of .blast_tab output. ... ok
parses NUCmer .delta/.filter file. ... ok
processes directory of .delta files into ANIResults. ... ok
generate NUCmer command line with maxmatch. ... ok
generate multiple abstract NUCmer/delta-filter command-lines. ... ok
generate dependency tree of NUCmer/delta-filter jobs. ... ok
generate single abstract NUCmer/delta-filter command-line. ... ok
ANIb results concordant with JSpecies. ... ok
ANIm results concordant with JSpecies. ... ok
TETRA results concordant with JSpecies. ... ok
Test Biopython import. ... ok
Test matplotlib import. ... ok
Test numpy import. ... ok
Test pandas import. ... ok
Test scipy import. ... ok
Test that BLAST+ is runnable. ... ok
Test that NUCmer is runnable. ... ok
Write .png graphics with mpl ... ok
Write .svg graphics with mpl ... ok
Write .pdf graphics with mpl ... ok
Write .png graphics with seaborn ... ok
Write .svg graphics with seaborn ... ok
Write .pdf graphics with seaborn ... ok
create dummy job with dependency. ... ok
create a dummy job. ... ok
create dummy job with command. ... ok
create dummy job, add and remove dependency. ... ok
create dummy 1-parameter sweep jobgroup. ... ok
create dummy 2-parameter sweep jobgroup. ... ok
add jobgroup dependency. ... ok
create dummy jobgroup. ... ok
add and remove jobgroup dependency. ... ok
module builds command sets. ... ok
module runs dependency graph. ... ok
multiprocessing() runs basic jobs. ... ok
Test parsing of NUCmer delta file. ... ok
TETRA correlation calculated correctly. ... ok
detects unambiguous IUPAC symbols correctly. ... ok
TETRA Z-score calculated correctly. ... ok
----------------------------------------------------------------------
Ran 46 tests in 1594.078s
OK
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-pyani
running install
running build
running build_py
running egg_info
writing pyani.egg-info/PKG-INFO
writing dependency_links to pyani.egg-info/dependency_links.txt
writing requirements to pyani.egg-info/requires.txt
writing top-level names to pyani.egg-info/top_level.txt
reading manifest file 'pyani.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pyani.egg-info/SOURCES.txt'
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani/anib.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani/anim.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani/pyani_config.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani/pyani_files.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani/pyani_graphics.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani/pyani_jobs.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani/pyani_tools.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani/run_multiprocessing.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani/run_sge.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani/tetra.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani/__pycache__/anib.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani/__pycache__/pyani_config.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani/__pycache__/pyani_files.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani/__pycache__/pyani_jobs.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani/__pycache__/pyani_tools.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani/__pycache__/anim.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani/__pycache__/run_multiprocessing.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani/__pycache__/tetra.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pyani/build/pyani/__pycache__/pyani_graphics.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__pycache__
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/anib.py to anib.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/anim.py to anim.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/pyani_config.py to pyani_config.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/pyani_files.py to pyani_files.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/pyani_graphics.py to pyani_graphics.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/pyani_jobs.py to pyani_jobs.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/pyani_tools.py to pyani_tools.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/run_multiprocessing.py to run_multiprocessing.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/run_sge.py to run_sge.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/tetra.py to tetra.cpython-39.pyc
running install_egg_info
Copying pyani.egg-info to /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani-0.2.11.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin
copying build/scripts-3.9/average_nucleotide_identity.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin
copying build/scripts-3.9/genbank_get_genomes_by_taxon.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin
copying build/scripts-3.9/delta_filter_wrapper.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin/average_nucleotide_identity.py to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin/genbank_get_genomes_by_taxon.py to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin/delta_filter_wrapper.py to 755
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installman --language=C
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -a -O--buildsystem=pybuild
dh_strip -a -a -O--buildsystem=pybuild
dh_makeshlibs -a -a -O--buildsystem=pybuild
dh_shlibdeps -a -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pyani' in '../python3-pyani_0.2.11-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../python-pyani_0.2.11-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
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Build finished at 2021-08-21T16:19:18Z
Finished
--------
I: Built successfully
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| Changes |
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python-pyani_0.2.11-1_armhf.changes:
------------------------------------
Format: 1.8
Date: Mon, 16 Aug 2021 23:48:36 +0530
Source: python-pyani
Binary: python3-pyani
Architecture: armhf
Version: 0.2.11-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
python3-pyani - Python3 module for average nucleotide identity analyses
Changes:
python-pyani (0.2.11-1) unstable; urgency=medium
.
* Team Upload.
* d/watch: Fix watch regex
* New upstream version 0.2.11
* Update Manpage
* Bump debhelper-compat version to 13
* Declare compliance with policy 4.5.1
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Checksums-Sha256:
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Files:
51d9dd12990f995184842954700b01fd 7573 science optional python-pyani_0.2.11-1_armhf.buildinfo
1830f44d83f6a8fe5a9394ab96573486 47752 python optional python3-pyani_0.2.11-1_armhf.deb
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| Package contents |
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python3-pyani_0.2.11-1_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 47752 bytes: control archive=1840 bytes.
841 bytes, 17 lines control
2017 bytes, 24 lines md5sums
251 bytes, 12 lines * postinst #!/bin/sh
400 bytes, 12 lines * prerm #!/bin/sh
Package: python3-pyani
Source: python-pyani
Version: 0.2.11-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 210
Depends: python3-biopython, python3-matplotlib, python3-pandas, python3-scipy, python3-seaborn, python3:any, python3-setuptools, mummer, ncbi-blast+
Section: python
Priority: optional
Homepage: https://github.com/widdowquinn/pyani
Description: Python3 module for average nucleotide identity analyses
Pyani is a Python3 module and script that provides support for
calculating average nucleotide identity (ANI) and related measures for
whole genome comparisons, and rendering relevant graphical summary
output. Where available, it takes advantage of multicore systems, and
can integrate with SGE/OGE-type job schedulers for the sequence
comparisons.
drwxr-xr-x root/root 0 2021-08-16 18:18 ./
drwxr-xr-x root/root 0 2021-08-16 18:18 ./usr/
drwxr-xr-x root/root 0 2021-08-16 18:18 ./usr/bin/
-rwxr-xr-x root/root 36316 2021-08-16 18:18 ./usr/bin/average_nucleotide_identity.py
-rwxr-xr-x root/root 2690 2021-08-16 18:18 ./usr/bin/delta_filter_wrapper.py
-rwxr-xr-x root/root 27037 2021-08-16 18:18 ./usr/bin/genbank_get_genomes_by_taxon.py
drwxr-xr-x root/root 0 2021-08-16 18:18 ./usr/lib/
drwxr-xr-x root/root 0 2021-08-16 18:18 ./usr/lib/python3/
drwxr-xr-x root/root 0 2021-08-16 18:18 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2021-08-16 18:18 ./usr/lib/python3/dist-packages/pyani-0.2.11.egg-info/
-rw-r--r-- root/root 23693 2021-08-16 18:18 ./usr/lib/python3/dist-packages/pyani-0.2.11.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2021-08-16 18:18 ./usr/lib/python3/dist-packages/pyani-0.2.11.egg-info/dependency_links.txt
-rw-r--r-- root/root 0 2021-08-16 18:18 ./usr/lib/python3/dist-packages/pyani-0.2.11.egg-info/requires.txt
-rw-r--r-- root/root 6 2021-08-16 18:18 ./usr/lib/python3/dist-packages/pyani-0.2.11.egg-info/top_level.txt
drwxr-xr-x root/root 0 2021-08-16 18:18 ./usr/lib/python3/dist-packages/pyani/
-rw-r--r-- root/root 116 2021-06-22 14:17 ./usr/lib/python3/dist-packages/pyani/__init__.py
-rw-r--r-- root/root 21988 2021-06-22 14:17 ./usr/lib/python3/dist-packages/pyani/anib.py
-rw-r--r-- root/root 9522 2021-06-22 14:17 ./usr/lib/python3/dist-packages/pyani/anim.py
-rw-r--r-- root/root 5789 2021-06-22 14:17 ./usr/lib/python3/dist-packages/pyani/pyani_config.py
-rw-r--r-- root/root 1664 2021-06-22 14:17 ./usr/lib/python3/dist-packages/pyani/pyani_files.py
-rw-r--r-- root/root 14135 2021-06-22 14:17 ./usr/lib/python3/dist-packages/pyani/pyani_graphics.py
-rw-r--r-- root/root 7157 2021-06-22 14:17 ./usr/lib/python3/dist-packages/pyani/pyani_jobs.py
-rw-r--r-- root/root 6905 2021-06-22 14:17 ./usr/lib/python3/dist-packages/pyani/pyani_tools.py
-rw-r--r-- root/root 3249 2021-06-22 14:17 ./usr/lib/python3/dist-packages/pyani/run_multiprocessing.py
-rw-r--r-- root/root 9985 2021-06-22 14:17 ./usr/lib/python3/dist-packages/pyani/run_sge.py
-rw-r--r-- root/root 6239 2021-06-22 14:17 ./usr/lib/python3/dist-packages/pyani/tetra.py
drwxr-xr-x root/root 0 2021-08-16 18:18 ./usr/share/
drwxr-xr-x root/root 0 2021-08-16 18:18 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-08-16 18:18 ./usr/share/doc/python3-pyani/
-rw-r--r-- root/root 639 2021-08-16 18:18 ./usr/share/doc/python3-pyani/changelog.Debian.gz
-rw-r--r-- root/root 2318 2021-06-22 14:17 ./usr/share/doc/python3-pyani/changelog.gz
-rw-r--r-- root/root 1356 2021-08-16 18:17 ./usr/share/doc/python3-pyani/copyright
drwxr-xr-x root/root 0 2021-08-16 18:18 ./usr/share/lintian/
drwxr-xr-x root/root 0 2021-08-16 18:18 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 122 2021-08-16 18:17 ./usr/share/lintian/overrides/python3-pyani
drwxr-xr-x root/root 0 2021-08-16 18:18 ./usr/share/man/
drwxr-xr-x root/root 0 2021-08-16 18:18 ./usr/share/man/man1/
-rw-r--r-- root/root 1575 2021-08-16 18:18 ./usr/share/man/man1/average_nucleotide_identity.py.1.gz
-rw-r--r-- root/root 756 2021-08-16 18:18 ./usr/share/man/man1/genbank_get_genomes_by_taxon.py.1.gz
+------------------------------------------------------------------------------+
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+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 160412
Build-Time: 1651
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1087
Job: python-pyani_0.2.11-1
Machine Architecture: armhf
Package: python-pyani
Package-Time: 2802
Source-Version: 0.2.11-1
Space: 160412
Status: successful
Version: 0.2.11-1
--------------------------------------------------------------------------------
Finished at 2021-08-21T16:19:18Z
Build needed 00:46:42, 160412k disc space