python-pyani →
0.2.10-2 →
armhf → 2020-03-31 01:30:37
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| python-pyani 0.2.10-2 (armhf) Tue, 31 Mar 2020 00:18:54 +0000 |
+==============================================================================+
Package: python-pyani
Version: 0.2.10-2
Source Version: 0.2.10-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-b73c6a9a-9362-4d0b-b651-11eb152589ab' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.6 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-pyani' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-pyani.git
Please use:
git clone https://salsa.debian.org/med-team/python-pyani.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 49.0 MB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main python-pyani 0.2.10-2 (dsc) [2334 B]
Get:2 http://172.17.0.1/private bullseye-staging/main python-pyani 0.2.10-2 (tar) [49.0 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main python-pyani 0.2.10-2 (diff) [5160 B]
Fetched 49.0 MB in 6s (8407 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-pyani-9Yo44l/python-pyani-0.2.10' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-pyani-9Yo44l' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-OYHdqT/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-OYHdqT/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-OYHdqT/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-OYHdqT/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-OYHdqT/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-OYHdqT/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-OYHdqT/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-OYHdqT/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2836 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-OYHdqT/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (20.7 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12230 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-python, python3-all-dev, python3-setuptools, python3-biopython, python3-matplotlib, python3-pandas, python3-scipy, python3-seaborn, mummer, ncbi-blast+, python3-nose
Filtered Build-Depends: debhelper-compat (= 12), dh-python, python3-all-dev, python3-setuptools, python3-biopython, python3-matplotlib, python3-pandas, python3-scipy, python3-seaborn, mummer, ncbi-blast+, python3-nose
dpkg-deb: building package 'sbuild-build-depends-python-pyani-dummy' in '/<<BUILDDIR>>/resolver-OYHdqT/apt_archive/sbuild-build-depends-python-pyani-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-pyani-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-OYHdqT/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-OYHdqT/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-OYHdqT/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-OYHdqT/apt_archive ./ Sources [581 B]
Get:5 copy:/<<BUILDDIR>>/resolver-OYHdqT/apt_archive ./ Packages [647 B]
Fetched 2561 B in 1s (3462 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install python-pyani build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev blt bsdmainutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config
fonts-lyx gawk gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libblas3 libbsd0 libcroco3 libdebhelper-perl libelf1
libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1
libfreetype6 libgfortran5 libglib2.0-0 libicu63 libimagequant0 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0
liblcms2-2 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls12
libmbedx509-0 libmpdec2 libpipeline1 libpng16-16 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev
libpython3.7-minimal libpython3.7-stdlib libpython3.8 libpython3.8-dev
libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libssl1.1
libsub-override-perl libtcl8.6 libtiff5 libtinfo5 libtk8.6 libtool
libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 m4 man-db
mime-support mummer ncbi-blast+ ncbi-data po-debconf python-matplotlib-data
python3 python3-all python3-all-dev python3-biopython python3-cycler
python3-dateutil python3-decorator python3-dev python3-distutils
python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal
python3-nose python3-numpy python3-pandas python3-pandas-lib python3-pil
python3-pkg-resources python3-pyparsing python3-reportlab
python3-reportlab-accel python3-scipy python3-seaborn python3-setuptools
python3-six python3-tk python3-tz python3.7 python3.7-dev python3.7-minimal
python3.8 python3.8-dev python3.8-minimal sensible-utils tk8.6-blt2.5
ttf-bitstream-vera ucf x11-common zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc blt-demo wamerican | wordlist
whois vacation dh-make gawk-doc gettext-doc libasprintf-dev libgettextpo-dev
groff libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-venv bwa clustalo clustalw dialign dssp
emboss fasttree mafft muscle phylip phyml prank probcons python3-mysqldb
python3-rdflib python3-renderpm python3-psycopg2 raxml samtools t-coffee
wise w3-dtd-mathml python-cycler-doc dvipng ffmpeg gir1.2-gtk-3.0
ghostscript inkscape ipython3 librsvg2-common python-matplotlib-doc
python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5
python3-sip python3-tornado texlive-extra-utils texlive-latex-extra
ttf-staypuft python-nose-doc gfortran python-numpy-doc python3-pytest
python3-numpy-dbg python-pandas-doc python3-statsmodels python-pil-doc
python3-pil-dbg python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools
python-reportlab-doc python-scipy-doc python-setuptools-doc tix
python3-tk-dbg python3.7-venv python3.7-doc binfmt-support python3.8-venv
python3.8-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl
python-biopython-doc python3-numexpr python3-tables python3-xlrd
python3-openpyxl python3-xlwt python3-bs4 python3-html5lib python3-lxml
python3-olefile python3-renderpm python3-patsy
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev blt bsdmainutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config
fonts-lyx gawk gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libblas3 libbsd0 libcroco3 libdebhelper-perl libelf1
libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1
libfreetype6 libgfortran5 libglib2.0-0 libicu63 libimagequant0 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0
liblcms2-2 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls12
libmbedx509-0 libmpdec2 libpipeline1 libpng16-16 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev
libpython3.7-minimal libpython3.7-stdlib libpython3.8 libpython3.8-dev
libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libssl1.1
libsub-override-perl libtcl8.6 libtiff5 libtinfo5 libtk8.6 libtool
libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 m4 man-db
mime-support mummer ncbi-blast+ ncbi-data po-debconf python-matplotlib-data
python3 python3-all python3-all-dev python3-biopython python3-cycler
python3-dateutil python3-decorator python3-dev python3-distutils
python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal
python3-nose python3-numpy python3-pandas python3-pandas-lib python3-pil
python3-pkg-resources python3-pyparsing python3-reportlab
python3-reportlab-accel python3-scipy python3-seaborn python3-setuptools
python3-six python3-tk python3-tz python3.7 python3.7-dev python3.7-minimal
python3.8 python3.8-dev python3.8-minimal
sbuild-build-depends-python-pyani-dummy sensible-utils tk8.6-blt2.5
ttf-bitstream-vera ucf x11-common zlib1g-dev
0 upgraded, 132 newly installed, 0 to remove and 1 not upgraded.
Need to get 181 MB of archives.
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Get:1 copy:/<<BUILDDIR>>/resolver-OYHdqT/apt_archive ./ sbuild-build-depends-python-pyani-dummy 0.invalid.0 [932 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.1-1 [1262 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf gawk armhf 1:5.0.1+dfsg-1 [540 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.2-1 [744 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.2-1 [1628 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-2 [37.5 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-3 [68.1 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.2-1 [1597 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.2-1 [410 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.2-2 [20.7 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.2-2 [62.6 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.7-1 [585 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.7-1 [1532 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
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Get:27 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
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Get:30 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
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Get:33 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libtcl8.6 armhf 8.6.10+dfsg-1 [886 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-2 [274 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.1-2 [330 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf ttf-bitstream-vera all 1.10-8 [352 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
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Get:49 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+20 [252 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libtk8.6 armhf 8.6.10-1 [678 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4 [468 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf blt armhf 2.5.3+dfsg-4 [14.8 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
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Get:57 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB]
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Get:63 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.1-1 [1157 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-3 [7987 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-4 [592 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.10 [1003 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.2-2 [78.4 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.2-2 [145 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20200315 [91.6 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf fonts-lyx all 2.3.4.2-2 [200 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-1 [108 kB]
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Get:77 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10-20200324-1+rpi1 [230 kB]
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Get:80 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery all 3.3.1~dfsg-3 [332 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-1 [1597 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-7 [26.1 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf liblcms2-2 armhf 2.9-4 [119 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf liblmdb0 armhf 0.9.22-1 [38.2 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libmbedcrypto3 armhf 2.16.5-1 [194 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libmbedx509-0 armhf 2.16.5-1 [100 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libmbedtls12 armhf 2.16.5-1 [126 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8 armhf 3.8.2-1 [1367 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-dev armhf 3.8.2-1 [46.0 MB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.8.2-2 [20.9 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.7-1 [1670 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7 armhf 3.7.7-1 [1253 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-dev armhf 3.7.7-1 [40.2 MB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.8.2-2 [1072 B]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libwebpmux3 armhf 0.6.1-2 [94.2 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf mummer armhf 3.23+dfsg-4+b1 [767 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf ncbi-data all 6.1.20170106+dfsg1-8 [3552 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf ncbi-blast+ armhf 2.9.0-4 [9088 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf python-matplotlib-data all 3.1.2-2 [4139 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.7-1 [354 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.8.2-2 [1060 B]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf python3.8-dev armhf 3.8.2-1 [533 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.8.2-2 [1168 B]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf python3.7-dev armhf 3.7.7-1 [517 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.8.2-2 [1076 B]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 44.0.0-1 [155 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.17.4-5+b1 [4484 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf python3-reportlab-accel armhf 3.5.34-1 [39.3 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf python3-pil armhf 6.2.1-2+b1 [396 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf python3-reportlab all 3.5.34-1 [564 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf python3-biopython armhf 1.76+dfsg-1+b1 [1393 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.14.0-2 [16.7 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf python3-cycler all 0.10.0-3 [8084 B]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf python3-dateutil all 2.7.3-3 [64.5 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf python3-decorator all 4.4.2-1 [15.8 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf python3-kiwisolver armhf 1.0.1-3 [245 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf python3-pyparsing all 2.4.6-1 [109 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf python3-matplotlib armhf 3.1.2-2 [5303 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf python3-nose all 1.3.7-5 [133 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf python3-tz all 2019.3-1 [27.2 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf python3-pandas-lib armhf 0.25.3+dfsg-7 [7006 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf python3-pandas all 0.25.3+dfsg-7 [1984 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf python3-scipy armhf 1.3.3-3+b1 [12.1 MB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf python3-tk armhf 3.8.2-2 [107 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf python3-seaborn all 0.10.0-1 [155 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 44.0.0-1 [313 kB]
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update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
invoke-rc.d: could not determine current runlevel
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Not building database; man-db/auto-update is not 'true'.
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Setting up python3-pandas (0.25.3+dfsg-7) ...
/usr/lib/python3/dist-packages/pandas/tests/frame/test_alter_axes.py:241: SyntaxWarning: "is" with a literal. Did you mean "=="?
False if (keys[0] is "A" and keys[1] is "A") else drop # noqa: F632
/usr/lib/python3/dist-packages/pandas/tests/frame/test_alter_axes.py:241: SyntaxWarning: "is" with a literal. Did you mean "=="?
False if (keys[0] is "A" and keys[1] is "A") else drop # noqa: F632
Setting up libpython3-all-dev:armhf (3.8.2-2) ...
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Processing triggers for libc-bin (2.30-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.34-5+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-3+rpi1 gcc-9_9.3.0-3+rpi1 libc6-dev_2.30-2+rpi1 libstdc++-9-dev_9.3.0-3+rpi1 libstdc++6_10-20200324-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_2.0.1 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-5+rpi1 binutils-arm-linux-gnueabihf_2.34-5+rpi1 binutils-common_2.34-5+rpi1 blt_2.5.3+dfsg-4 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.3.0-3+rpi1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.10 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20200315 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 fontconfig-config_2.13.1-2 fonts-lyx_2.3.4.2-2 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-3+rpi1 gawk_1:5.0.1+dfsg-1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10-20200324-1+rpi1 gcc-6-base_6.5.0-1+rpi3 gcc-7-base_7.5.0-5 gcc-8-base_8.4.0-1+rpi1 gcc-9_9.3.0-3+rpi1 gcc-9-base_9.3.0-3+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-2 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-6 libapt-pkg6.0_2.0.1 libarchive-zip-perl_1.68-1 libasan5_9.3.0-3+rpi1 libassuan0_2.5.3-7 libatomic1_10-20200324-1+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b2 libbinutils_2.34-5+rpi1 libblas3_3.9.0-1 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-2+rpi1 libc-dev-bin_2.30-2+rpi1 libc6_2.30-2+rpi1 libc6-dev_2.30-2+rpi1 libcap-ng0_0.7.9-2.1+b1 libcc1-0_10-20200324-1+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.15-1 libcrypt1_1:4.4.15-1 libctf-nobfd0_2.34-5+rpi1 libctf0_2.34-5+rpi1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.10 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libfontconfig1_2.13.1-2 libfreetype6_2.10.1-2 libgcc-9-dev_9.3.0-3+rpi1 libgcc-s1_10-20200324-1+rpi1 libgcc1_1:10-20200324-1+rpi1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_10-20200324-1+rpi1 libglib2.0-0_2.64.1-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.12-2 libgomp1_10-20200324-1+rpi1 libgpg-error0_1.37-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-3 libidn2-0_2.3.0-1 libimagequant0_2.12.2-1.1 libisl22_0.22.1-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:1.5.2-2+b1 libjs-jquery_3.3.1~dfsg-3 libjs-jquery-ui_1.12.1+dfsg-5 libksba8_1.3.5-2 liblapack3_3.9.0-1 liblbfgsb0_3.0+dfsg.3-7 liblcms2-2_2.9-4 libldap-2.4-2_2.4.49+dfsg-2 libldap-common_2.4.49+dfsg-2 liblmdb0_0.9.22-1 liblocale-gettext-perl_1.07-4 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmbedcrypto3_2.16.5-1 libmbedtls12_2.16.5-1 libmbedx509-0_2.16.5-1 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpng16-16_1.6.37-2 libpython3-all-dev_3.8.2-2 libpython3-dev_3.8.2-2 libpython3-stdlib_3.8.2-2 libpython3.7_3.7.7-1 libpython3.7-dev_3.7.7-1 libpython3.7-minimal_3.7.7-1 libpython3.7-stdlib_3.7.7-1 libpython3.8_3.8.2-1 libpython3.8-dev_3.8.2-1 libpython3.8-minimal_3.8.2-1 libpython3.8-stdlib_3.8.2-1 libreadline8_8.0-4 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.31.1-4 libss2_1.45.6-1 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.3.0-3+rpi1 libstdc++6_10-20200324-1+rpi1 libsub-override-perl_0.09-2 libsystemd0_244.3-1+rpi1 libtasn1-6_4.16.0-2 libtcl8.6_8.6.10+dfsg-1 libtext-charwidth-perl_0.04-10 libtext-iconv-perl_1.7-7 libtiff5_4.1.0+git191117-2 libtinfo5_6.2-1 libtinfo6_6.2-1 libtk8.6_8.6.10-1 libtool_2.4.6-14 libubsan1_10-20200324-1+rpi1 libuchardet0_0.0.6-3 libudev1_244.3-1+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libx11-6_2:1.6.9-2 libx11-data_2:1.6.9-2 libxau6_1:1.0.8-1+b2 libxcb1_1.13.1-5 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.10+dfsg-4 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libzstd1_1.4.4+dfsg-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.34-0.1 mummer_3.23+dfsg-4+b1 ncbi-blast+_2.9.0-4 ncbi-data_6.1.20170106+dfsg1-8 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 po-debconf_1.0.21 python-matplotlib-data_3.1.2-2 python3_3.8.2-2 python3-all_3.8.2-2 python3-all-dev_3.8.2-2 python3-biopython_1.76+dfsg-1+b1 python3-cycler_0.10.0-3 python3-dateutil_2.7.3-3 python3-decorator_4.4.2-1 python3-dev_3.8.2-2 python3-distutils_3.8.2-2 python3-kiwisolver_1.0.1-3 python3-lib2to3_3.8.2-2 python3-matplotlib_3.1.2-2 python3-minimal_3.8.2-2 python3-nose_1.3.7-5 python3-numpy_1:1.17.4-5+b1 python3-pandas_0.25.3+dfsg-7 python3-pandas-lib_0.25.3+dfsg-7 python3-pil_6.2.1-2+b1 python3-pkg-resources_44.0.0-1 python3-pyparsing_2.4.6-1 python3-reportlab_3.5.34-1 python3-reportlab-accel_3.5.34-1 python3-scipy_1.3.3-3+b1 python3-seaborn_0.10.0-1 python3-setuptools_44.0.0-1 python3-six_1.14.0-2 python3-tk_3.8.2-2 python3-tz_2019.3-1 python3.7_3.7.7-1 python3.7-dev_3.7.7-1 python3.7-minimal_3.7.7-1 python3.8_3.8.2-1 python3.8-dev_3.8.2-1 python3.8-minimal_3.8.2-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-pyani-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tk8.6-blt2.5_2.5.3+dfsg-4 ttf-bitstream-vera_1.10-8 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 x11-common_1:7.7+20 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Mar 20 21:27:19 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-pyani_0.2.10-2.dsc
dpkg-source: info: extracting python-pyani in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-pyani_0.2.10.orig.tar.gz
dpkg-source: info: unpacking python-pyani_0.2.10-2.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-b73c6a9a-9362-4d0b-b651-11eb152589ab
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-pyani
dpkg-buildpackage: info: source version 0.2.10-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:217: python3.7 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
I: pybuild base:217: python3.8 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.8' does not exist -- can't clean it
rm -f pyani.egg-info/PKG-INFO pyani.egg-info/SOURCES.txt pyani.egg-info/dependency_links.txt pyani.egg-info/requires.txt pyani.egg-info/top_level.txt
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.7 setup.py config
running config
I: pybuild base:217: python3.8 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3.7 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani
copying pyani/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani
copying pyani/anib.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani
copying pyani/anim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani
copying pyani/pyani_config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani
copying pyani/pyani_files.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani
copying pyani/pyani_graphics.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani
copying pyani/pyani_jobs.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani
copying pyani/pyani_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani
copying pyani/run_multiprocessing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani
copying pyani/run_sge.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani
copying pyani/tetra.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani
running egg_info
creating pyani.egg-info
writing pyani.egg-info/PKG-INFO
writing dependency_links to pyani.egg-info/dependency_links.txt
writing requirements to pyani.egg-info/requires.txt
writing top-level names to pyani.egg-info/top_level.txt
writing manifest file 'pyani.egg-info/SOURCES.txt'
reading manifest file 'pyani.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pyani.egg-info/SOURCES.txt'
running build_scripts
creating build
creating build/scripts-3.7
copying and adjusting bin/average_nucleotide_identity.py -> build/scripts-3.7
copying and adjusting bin/genbank_get_genomes_by_taxon.py -> build/scripts-3.7
copying and adjusting bin/delta_filter_wrapper.py -> build/scripts-3.7
changing mode of build/scripts-3.7/average_nucleotide_identity.py from 644 to 755
changing mode of build/scripts-3.7/genbank_get_genomes_by_taxon.py from 644 to 755
changing mode of build/scripts-3.7/delta_filter_wrapper.py from 644 to 755
I: pybuild base:217: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani
copying pyani/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani
copying pyani/anib.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani
copying pyani/anim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani
copying pyani/pyani_config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani
copying pyani/pyani_files.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani
copying pyani/pyani_graphics.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani
copying pyani/pyani_jobs.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani
copying pyani/pyani_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani
copying pyani/run_multiprocessing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani
copying pyani/run_sge.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani
copying pyani/tetra.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani
running egg_info
writing pyani.egg-info/PKG-INFO
writing dependency_links to pyani.egg-info/dependency_links.txt
writing requirements to pyani.egg-info/requires.txt
writing top-level names to pyani.egg-info/top_level.txt
reading manifest file 'pyani.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pyani.egg-info/SOURCES.txt'
running build_scripts
creating build/scripts-3.8
copying and adjusting bin/average_nucleotide_identity.py -> build/scripts-3.8
copying and adjusting bin/genbank_get_genomes_by_taxon.py -> build/scripts-3.8
copying and adjusting bin/delta_filter_wrapper.py -> build/scripts-3.8
changing mode of build/scripts-3.8/average_nucleotide_identity.py from 644 to 755
changing mode of build/scripts-3.8/genbank_get_genomes_by_taxon.py from 644 to 755
changing mode of build/scripts-3.8/delta_filter_wrapper.py from 644 to 755
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build; python3.7 -m nose -v tests
generate BLAST+ db commands. ... ok
generate BLASTN+ commands. ... ok
generate dictionary of BLASTN+ database jobs. ... ok
generate BLASTN+ command-line. ... ok
create jobgraph for BLASTN+ jobs. ... ok
generate makeblastdb command-line. ... ok
fragment files for ANIb/ANIblastall. ... ok
parses directory of .blast_tab output. ... ok
parses NUCmer .delta/.filter file. ... ok
processes directory of .delta files into ANIResults. ... ok
generate NUCmer command line with maxmatch. ... ok
generate multiple abstract NUCmer/delta-filter command-lines. ... ok
generate dependency tree of NUCmer/delta-filter jobs. ... ok
generate single abstract NUCmer/delta-filter command-line. ... ok
ANIb results concordant with JSpecies. ... ok
ANIm results concordant with JSpecies. ... ok
TETRA results concordant with JSpecies. ... ok
Test Biopython import. ... ok
Test matplotlib import. ... ok
Test numpy import. ... ok
Test pandas import. ... ok
Test scipy import. ... ok
Test that BLAST+ is runnable. ... ok
Test that NUCmer is runnable. ... ok
Write .png graphics with mpl ... ok
Write .svg graphics with mpl ... ok
Write .pdf graphics with mpl ... ok
Write .png graphics with seaborn ... ok
Write .svg graphics with seaborn ... ok
Write .pdf graphics with seaborn ... ok
create dummy job with dependency. ... ok
create a dummy job. ... ok
create dummy job with command. ... ok
create dummy job, add and remove dependency. ... ok
create dummy 1-parameter sweep jobgroup. ... ok
create dummy 2-parameter sweep jobgroup. ... ok
add jobgroup dependency. ... ok
create dummy jobgroup. ... ok
add and remove jobgroup dependency. ... ok
module builds command sets. ... ok
module runs dependency graph. ... ok
multiprocessing() runs basic jobs. ... ok
Test parsing of NUCmer delta file. ... ok
TETRA correlation calculated correctly. ... ok
detects unambiguous IUPAC symbols correctly. ... ok
TETRA Z-score calculated correctly. ... ok
----------------------------------------------------------------------
Ran 46 tests in 1665.873s
OK
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build; python3.8 -m nose -v tests
generate BLAST+ db commands. ... ok
generate BLASTN+ commands. ... ok
generate dictionary of BLASTN+ database jobs. ... ok
generate BLASTN+ command-line. ... ok
create jobgraph for BLASTN+ jobs. ... ok
generate makeblastdb command-line. ... ok
fragment files for ANIb/ANIblastall. ... ok
parses directory of .blast_tab output. ... ok
parses NUCmer .delta/.filter file. ... ok
processes directory of .delta files into ANIResults. ... ok
generate NUCmer command line with maxmatch. ... ok
generate multiple abstract NUCmer/delta-filter command-lines. ... ok
generate dependency tree of NUCmer/delta-filter jobs. ... ok
generate single abstract NUCmer/delta-filter command-line. ... ok
ANIb results concordant with JSpecies. ... ok
ANIm results concordant with JSpecies. ... ok
TETRA results concordant with JSpecies. ... ok
Test Biopython import. ... ok
Test matplotlib import. ... ok
Test numpy import. ... ok
Test pandas import. ... ok
Test scipy import. ... ok
Test that BLAST+ is runnable. ... ok
Test that NUCmer is runnable. ... ok
Write .png graphics with mpl ... ok
Write .svg graphics with mpl ... ok
Write .pdf graphics with mpl ... ok
Write .png graphics with seaborn ... ok
Write .svg graphics with seaborn ... ok
Write .pdf graphics with seaborn ... ok
create dummy job with dependency. ... ok
create a dummy job. ... ok
create dummy job with command. ... ok
create dummy job, add and remove dependency. ... ok
create dummy 1-parameter sweep jobgroup. ... ok
create dummy 2-parameter sweep jobgroup. ... ok
add jobgroup dependency. ... ok
create dummy jobgroup. ... ok
add and remove jobgroup dependency. ... ok
module builds command sets. ... ok
module runs dependency graph. ... ok
multiprocessing() runs basic jobs. ... ok
Test parsing of NUCmer delta file. ... ok
TETRA correlation calculated correctly. ... ok
detects unambiguous IUPAC symbols correctly. ... ok
TETRA Z-score calculated correctly. ... ok
----------------------------------------------------------------------
Ran 46 tests in 1666.219s
OK
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3.7 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-pyani
running install
running build
running build_py
running egg_info
writing pyani.egg-info/PKG-INFO
writing dependency_links to pyani.egg-info/dependency_links.txt
writing requirements to pyani.egg-info/requires.txt
writing top-level names to pyani.egg-info/top_level.txt
reading manifest file 'pyani.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pyani.egg-info/SOURCES.txt'
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani/anib.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani/anim.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani/pyani_config.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani/pyani_files.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani/pyani_graphics.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani/pyani_jobs.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani/pyani_tools.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani/run_multiprocessing.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani/run_sge.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani/tetra.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani/__pycache__/anib.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani/__pycache__/pyani_config.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani/__pycache__/pyani_files.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani/__pycache__/pyani_jobs.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani/__pycache__/pyani_tools.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani/__pycache__/anim.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani/__pycache__/run_multiprocessing.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani/__pycache__/tetra.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pyani/build/pyani/__pycache__/pyani_graphics.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani/__pycache__
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani/anib.py to anib.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani/anim.py to anim.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani/pyani_config.py to pyani_config.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani/pyani_files.py to pyani_files.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani/pyani_graphics.py to pyani_graphics.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani/pyani_jobs.py to pyani_jobs.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani/pyani_tools.py to pyani_tools.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani/run_multiprocessing.py to run_multiprocessing.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani/run_sge.py to run_sge.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani/tetra.py to tetra.cpython-37.pyc
running install_egg_info
Copying pyani.egg-info to /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.7/dist-packages/pyani-0.2.10.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin
copying build/scripts-3.7/average_nucleotide_identity.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin
copying build/scripts-3.7/genbank_get_genomes_by_taxon.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin
copying build/scripts-3.7/delta_filter_wrapper.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin/average_nucleotide_identity.py to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin/genbank_get_genomes_by_taxon.py to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin/delta_filter_wrapper.py to 755
I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-pyani
running install
running build
running build_py
running egg_info
writing pyani.egg-info/PKG-INFO
writing dependency_links to pyani.egg-info/dependency_links.txt
writing requirements to pyani.egg-info/requires.txt
writing top-level names to pyani.egg-info/top_level.txt
reading manifest file 'pyani.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pyani.egg-info/SOURCES.txt'
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani/anib.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani/anim.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani/pyani_config.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani/pyani_files.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani/pyani_graphics.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani/pyani_jobs.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani/pyani_tools.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani/run_multiprocessing.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani/run_sge.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani/tetra.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani
creating /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani/__pycache__/anib.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani/__pycache__/pyani_config.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani/__pycache__/pyani_files.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani/__pycache__/pyani_jobs.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani/__pycache__/pyani_tools.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani/__pycache__/anim.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani/__pycache__/run_multiprocessing.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani/__pycache__/tetra.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyani/build/pyani/__pycache__/pyani_graphics.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani/__pycache__
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani/anib.py to anib.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani/anim.py to anim.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani/pyani_config.py to pyani_config.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani/pyani_files.py to pyani_files.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani/pyani_graphics.py to pyani_graphics.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani/pyani_jobs.py to pyani_jobs.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani/pyani_tools.py to pyani_tools.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani/run_multiprocessing.py to run_multiprocessing.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani/run_sge.py to run_sge.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani/tetra.py to tetra.cpython-38.pyc
running install_egg_info
Copying pyani.egg-info to /<<PKGBUILDDIR>>/debian/python3-pyani/usr/lib/python3.8/dist-packages/pyani-0.2.10.egg-info
Skipping SOURCES.txt
running install_scripts
copying build/scripts-3.8/average_nucleotide_identity.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin
copying build/scripts-3.8/genbank_get_genomes_by_taxon.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin
copying build/scripts-3.8/delta_filter_wrapper.py -> /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin/average_nucleotide_identity.py to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin/genbank_get_genomes_by_taxon.py to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-pyani/usr/bin/delta_filter_wrapper.py to 755
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installman --language=C
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_python3 -a -O--buildsystem=pybuild
dh_installinit -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pyani' in '../python3-pyani_0.2.10-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../python-pyani_0.2.10-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-03-31T01:30:29Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-pyani_0.2.10-2_armhf.changes:
------------------------------------
Format: 1.8
Date: Fri, 20 Mar 2020 17:21:22 +0900
Source: python-pyani
Binary: python3-pyani
Architecture: armhf
Version: 0.2.10-2
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Sao I Kuan <saoikuan@gmail.com>
Description:
python3-pyani - Python3 module for average nucleotide identity analyses
Changes:
python-pyani (0.2.10-2) unstable; urgency=medium
.
* Team upload.
.
[ Sao I Kuan ]
* Add Testsuite: autopkgtest-pkg-python
* Add test script for autopkgtest
.
[ Andreas Tille ]
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Trim trailing whitespace.
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ca75770b561278411e51c1638ca94eb34c10d307 46688 python3-pyani_0.2.10-2_armhf.deb
Checksums-Sha256:
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Files:
76d0dd925e8a3e4295963a89b7156602 7383 science optional python-pyani_0.2.10-2_armhf.buildinfo
a0c3aee49e6774184a52cb8857e8962c 46688 python optional python3-pyani_0.2.10-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-pyani_0.2.10-2_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 46688 bytes: control archive=1840 bytes.
841 bytes, 17 lines control
2017 bytes, 24 lines md5sums
251 bytes, 12 lines * postinst #!/bin/sh
400 bytes, 12 lines * prerm #!/bin/sh
Package: python3-pyani
Source: python-pyani
Version: 0.2.10-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 206
Depends: python3-biopython, python3-matplotlib, python3-pandas, python3-scipy, python3-seaborn, python3:any, python3-setuptools, mummer, ncbi-blast+
Section: python
Priority: optional
Homepage: https://github.com/widdowquinn/pyani
Description: Python3 module for average nucleotide identity analyses
Pyani is a Python3 module and script that provides support for
calculating average nucleotide identity (ANI) and related measures for
whole genome comparisons, and rendering relevant graphical summary
output. Where available, it takes advantage of multicore systems, and
can integrate with SGE/OGE-type job schedulers for the sequence
comparisons.
drwxr-xr-x root/root 0 2020-03-20 08:21 ./
drwxr-xr-x root/root 0 2020-03-20 08:21 ./usr/
drwxr-xr-x root/root 0 2020-03-20 08:21 ./usr/bin/
-rwxr-xr-x root/root 36316 2020-03-20 08:21 ./usr/bin/average_nucleotide_identity.py
-rwxr-xr-x root/root 2690 2020-03-20 08:21 ./usr/bin/delta_filter_wrapper.py
-rwxr-xr-x root/root 27037 2020-03-20 08:21 ./usr/bin/genbank_get_genomes_by_taxon.py
drwxr-xr-x root/root 0 2020-03-20 08:21 ./usr/lib/
drwxr-xr-x root/root 0 2020-03-20 08:21 ./usr/lib/python3/
drwxr-xr-x root/root 0 2020-03-20 08:21 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2020-03-20 08:21 ./usr/lib/python3/dist-packages/pyani-0.2.10.egg-info/
-rw-r--r-- root/root 19979 2020-03-20 08:21 ./usr/lib/python3/dist-packages/pyani-0.2.10.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2020-03-20 08:21 ./usr/lib/python3/dist-packages/pyani-0.2.10.egg-info/dependency_links.txt
-rw-r--r-- root/root 0 2020-03-20 08:21 ./usr/lib/python3/dist-packages/pyani-0.2.10.egg-info/requires.txt
-rw-r--r-- root/root 6 2020-03-20 08:21 ./usr/lib/python3/dist-packages/pyani-0.2.10.egg-info/top_level.txt
drwxr-xr-x root/root 0 2020-03-20 08:21 ./usr/lib/python3/dist-packages/pyani/
-rw-r--r-- root/root 116 2020-02-12 08:18 ./usr/lib/python3/dist-packages/pyani/__init__.py
-rw-r--r-- root/root 21987 2020-02-12 08:18 ./usr/lib/python3/dist-packages/pyani/anib.py
-rw-r--r-- root/root 9522 2020-02-12 08:18 ./usr/lib/python3/dist-packages/pyani/anim.py
-rw-r--r-- root/root 5789 2020-02-12 08:18 ./usr/lib/python3/dist-packages/pyani/pyani_config.py
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-rw-r--r-- root/root 6239 2020-02-12 08:18 ./usr/lib/python3/dist-packages/pyani/tetra.py
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-rw-r--r-- root/root 1356 2020-03-20 08:21 ./usr/share/doc/python3-pyani/copyright
drwxr-xr-x root/root 0 2020-03-20 08:21 ./usr/share/lintian/
drwxr-xr-x root/root 0 2020-03-20 08:21 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 122 2020-03-20 08:21 ./usr/share/lintian/overrides/python3-pyani
drwxr-xr-x root/root 0 2020-03-20 08:21 ./usr/share/man/
drwxr-xr-x root/root 0 2020-03-20 08:21 ./usr/share/man/man1/
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Purging /<<BUILDDIR>>
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| Summary |
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Build Architecture: armhf
Build-Space: 160692
Build-Time: 3403
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 827
Job: python-pyani_0.2.10-2
Machine Architecture: armhf
Package: python-pyani
Package-Time: 4295
Source-Version: 0.2.10-2
Space: 160692
Status: successful
Version: 0.2.10-2
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Finished at 2020-03-31T01:30:29Z
Build needed 01:11:35, 160692k disc space