python-cobra →
0.26.3-2 →
armhf → 2023-09-23 10:28:37
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| python-cobra 0.26.3-2 (armhf) Sat, 23 Sep 2023 09:12:19 +0000 |
+==============================================================================+
Package: python-cobra
Version: 0.26.3-2
Source Version: 0.26.3-2
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/trixie-staging-armhf-sbuild-4eecc36f-ca71-4609-b96a-83136038465d' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.1 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [14.6 MB]
Fetched 28.7 MB in 29s (989 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-cobra' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-cobra.git
Please use:
git clone https://salsa.debian.org/med-team/python-cobra.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3762 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main python-cobra 0.26.3-2 (dsc) [2517 B]
Get:2 http://172.17.4.1/private trixie-staging/main python-cobra 0.26.3-2 (tar) [3751 kB]
Get:3 http://172.17.4.1/private trixie-staging/main python-cobra 0.26.3-2 (diff) [8644 B]
Fetched 3762 kB in 0s (9422 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-cobra-JQkpUH/python-cobra-0.26.3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-cobra-JQkpUH' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-SKcmXv/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-SKcmXv/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-SKcmXv/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-SKcmXv/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-SKcmXv/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-SKcmXv/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-SKcmXv/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-SKcmXv/apt_archive ./ Packages [430 B]
Fetched 2106 B in 1s (2703 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 12 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-SKcmXv/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (22.4 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11775 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any-amd64 any-i386 arm64 armel armhf mips mips64el mipsel ppc64el alpha hppa m68k powerpc powerpcspe ppc64 sh4 sparc64 all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-future, python3-importlib-resources, python3-numpy, python3-optlang (>= 1.7.0-1~), python3-ruamel.yaml, python3-pandas, python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 5.0.8-1~), python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-pytest-mock, python3-jsonschema, libsbml5, python3-matplotlib, python3-appdirs, python3-diskcache, python3-httpx, python3-pydantic, python3-rich
Filtered Build-Depends: debhelper-compat (= 13), dh-python, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-future, python3-importlib-resources, python3-numpy, python3-optlang (>= 1.7.0-1~), python3-ruamel.yaml, python3-pandas, python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 5.0.8-1~), python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-pytest-mock, python3-jsonschema, libsbml5, python3-matplotlib, python3-appdirs, python3-diskcache, python3-httpx, python3-pydantic, python3-rich
dpkg-deb: building package 'sbuild-build-depends-python-cobra-dummy' in '/<<BUILDDIR>>/resolver-SKcmXv/apt_archive/sbuild-build-depends-python-cobra-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-cobra-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-SKcmXv/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-SKcmXv/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-SKcmXv/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-SKcmXv/apt_archive ./ Sources [729 B]
Get:5 copy:/<<BUILDDIR>>/resolver-SKcmXv/apt_archive ./ Packages [789 B]
Fetched 2851 B in 1s (3658 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install python-cobra build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev blt bsdextrautils ca-certificates
cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx gettext
gettext-base groff-base intltool-debian libamd2 libarchive-zip-perl
libblas-dev libblas3 libbrotli1 libbsd0 libbtf1 libcamd2 libccolamd2
libcholmod3 libcolamd2 libcxsparse3 libdebhelper-perl libdeflate0 libelf1
libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libglpk-dev libglpk40
libgmp-dev libgmpxx4ldbl libgraphite2-3 libharfbuzz0b libicu72
libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui
libjs-sphinxdoc libjs-underscore libklu1 liblapack-dev liblapack3 liblbfgsb0
liblcms2-2 libldl2 liblerc4 libltdl7 libmagic-mgc libmagic1 libmetis5
libmongoose2 libopenjp2-7 libpipeline1 libpng16-16 libpython3-dev
libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal
libpython3.11-stdlib libqhull-r8.0 libraqm0 librbio2 libsbml5 libsliplu1
libspqr2 libsub-override-perl libsuitesparse-dev libsuitesparseconfig5
libtcl8.6 libtiff6 libtk8.6 libtool libuchardet0 libumfpack5 libwebp7
libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 m4 man-db
media-types openssl po-debconf python-matplotlib-data python3 python3-anyio
python3-appdirs python3-attr python3-brotli python3-certifi python3-chardet
python3-charset-normalizer python3-click python3-colorama python3-contourpy
python3-cpuinfo python3-cycler python3-dateutil python3-decorator
python3-depinfo python3-dev python3-diskcache python3-distutils
python3-fonttools python3-fs python3-future python3-h11 python3-httpcore
python3-httpx python3-idna python3-importlib-resources python3-iniconfig
python3-jsonschema python3-kiwisolver python3-lib2to3 python3-lxml
python3-lz4 python3-markdown-it python3-matplotlib python3-mdurl
python3-minimal python3-more-itertools python3-mpmath python3-numpy
python3-optlang python3-packaging python3-pandas python3-pandas-lib
python3-pil python3-pil.imagetk python3-pip python3-pipdeptree
python3-pkg-resources python3-pluggy python3-pydantic python3-pygments
python3-pyparsing python3-pyrsistent python3-pytest python3-pytest-benchmark
python3-pytest-mock python3-requests python3-rfc3986 python3-rich
python3-ruamel.yaml python3-ruamel.yaml.clib python3-sbml5 python3-scipy
python3-setuptools python3-simplejson python3-six python3-sniffio
python3-swiglpk python3-sympy python3-tabulate python3-tk
python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2
python3-urllib3 python3-wheel python3-zipp python3.11 python3.11-dev
python3.11-minimal swig swig4.0 tk8.6-blt2.5 unicode-data x11-common
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc blt-demo cython-doc dh-make flit
python3-build python3-installer gettext-doc libasprintf-dev libgettextpo-dev
groff liblapack-doc low-memory-monitor libiodbc2-dev
default-libmysqlclient-dev gmp-doc libgmp10-doc libmpfr-dev
libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc
python-charset-normalizer-doc python-cycler-doc python-future-doc
python-jsonschema-doc python-lxml-doc cm-super-minimal dvipng ffmpeg
fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common
python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5
python3-sip python3-tornado texlive-extra-utils texlive-latex-extra
python-mpmath-doc python3-gmpy2 gfortran python-pandas-doc
python3-statsmodels python-pil-doc python-pygments-doc ttf-bitstream-vera
python-pyparsing-doc python-pytest-mock-doc python3-mock
python3-cryptography python3-openssl python3-socks python-requests-doc
python-scipy-doc python-setuptools-doc texlive-fonts-extra python-sympy-doc
tix python3-tk-dbg python3.11-venv python3.11-doc binfmt-support swig-doc
swig-examples swig4.0-examples swig4.0-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common libgraphblas-dev libltdl-dev
libmail-sendmail-perl python3-json-pointer python3-rfc3987
python3-uritemplate python3-webcolors python3-bs4 python3-html5lib
python3-bottleneck python3-numexpr python3-odf python3-openpyxl
python3-tables python3-jinja2 python3-olefile python3-graphviz
python3-elasticsearch python3-freezegun python3-pygal isympy-common
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev blt bsdextrautils ca-certificates
cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx gettext
gettext-base groff-base intltool-debian libamd2 libarchive-zip-perl
libblas-dev libblas3 libbrotli1 libbsd0 libbtf1 libcamd2 libccolamd2
libcholmod3 libcolamd2 libcxsparse3 libdebhelper-perl libdeflate0 libelf1
libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libglpk-dev libglpk40
libgmp-dev libgmpxx4ldbl libgraphite2-3 libharfbuzz0b libicu72
libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui
libjs-sphinxdoc libjs-underscore libklu1 liblapack-dev liblapack3 liblbfgsb0
liblcms2-2 libldl2 liblerc4 libltdl7 libmagic-mgc libmagic1 libmetis5
libmongoose2 libopenjp2-7 libpipeline1 libpng16-16 libpython3-dev
libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal
libpython3.11-stdlib libqhull-r8.0 libraqm0 librbio2 libsbml5 libsliplu1
libspqr2 libsub-override-perl libsuitesparse-dev libsuitesparseconfig5
libtcl8.6 libtiff6 libtk8.6 libtool libuchardet0 libumfpack5 libwebp7
libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 m4 man-db
media-types openssl po-debconf python-matplotlib-data python3 python3-anyio
python3-appdirs python3-attr python3-brotli python3-certifi python3-chardet
python3-charset-normalizer python3-click python3-colorama python3-contourpy
python3-cpuinfo python3-cycler python3-dateutil python3-decorator
python3-depinfo python3-dev python3-diskcache python3-distutils
python3-fonttools python3-fs python3-future python3-h11 python3-httpcore
python3-httpx python3-idna python3-importlib-resources python3-iniconfig
python3-jsonschema python3-kiwisolver python3-lib2to3 python3-lxml
python3-lz4 python3-markdown-it python3-matplotlib python3-mdurl
python3-minimal python3-more-itertools python3-mpmath python3-numpy
python3-optlang python3-packaging python3-pandas python3-pandas-lib
python3-pil python3-pil.imagetk python3-pip python3-pipdeptree
python3-pkg-resources python3-pluggy python3-pydantic python3-pygments
python3-pyparsing python3-pyrsistent python3-pytest python3-pytest-benchmark
python3-pytest-mock python3-requests python3-rfc3986 python3-rich
python3-ruamel.yaml python3-ruamel.yaml.clib python3-sbml5 python3-scipy
python3-setuptools python3-simplejson python3-six python3-sniffio
python3-swiglpk python3-sympy python3-tabulate python3-tk
python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2
python3-urllib3 python3-wheel python3-zipp python3.11 python3.11-dev
python3.11-minimal sbuild-build-depends-python-cobra-dummy swig swig4.0
tk8.6-blt2.5 unicode-data x11-common zlib1g-dev
0 upgraded, 204 newly installed, 0 to remove and 12 not upgraded.
Need to get 116 MB of archives.
After this operation, 502 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-SKcmXv/apt_archive ./ sbuild-build-depends-python-cobra-dummy 0.invalid.0 [1072 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-minimal armhf 3.11.5-3 [800 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf python3.11-minimal armhf 3.11.5-3 [1676 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf python3-minimal armhf 3.11.4-5 [26.2 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf media-types all 10.1.0 [26.9 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-stdlib armhf 3.11.5-3 [1675 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf python3.11 armhf 3.11.5-3 [582 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libpython3-stdlib armhf 3.11.4-5 [9200 B]
Get:10 http://172.17.4.1/private trixie-staging/main armhf python3 armhf 3.11.4-5 [26.2 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.22.4-10 [774 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.2-1 [80.5 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.11.2-3 [1342 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.0.10-1 [1368 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20230311 [153 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-12 [156 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-13 [496 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.0.9-2+b3 [258 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf libpng16-16 armhf 1.6.40-1 [258 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [366 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.14.2-6 [316 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.14.2-6 [367 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.7-4 [111 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.6-1 [323 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.6-1 [726 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [477 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf cython3 armhf 0.29.36-1 [1212 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.6 [81.9 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:55 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:57 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-12 [1201 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.6 [952 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf python3-lib2to3 all 3.11.5-1 [77.5 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf python3-distutils all 3.11.5-1 [131 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf dh-python all 6.20230825 [106 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf fonts-lyx all 2.3.7-1 [186 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libsuitesparseconfig5 armhf 1:5.12.0+dfsg-2 [23.6 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf libamd2 armhf 1:5.12.0+dfsg-2 [30.2 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libbtf1 armhf 1:5.12.0+dfsg-2 [24.1 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libcamd2 armhf 1:5.12.0+dfsg-2 [30.7 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libccolamd2 armhf 1:5.12.0+dfsg-2 [31.7 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libcolamd2 armhf 1:5.12.0+dfsg-2 [28.3 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 12.2.0-14+rpi1 [238 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libmetis5 armhf 5.1.0.dfsg-7 [133 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libcholmod3 armhf 1:5.12.0+dfsg-2 [212 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libcxsparse3 armhf 1:5.12.0+dfsg-2 [52.1 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libexpat1-dev armhf 2.5.0-2 [130 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.74.6-1 [1203 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libltdl7 armhf 2.4.7-7 [390 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libglpk40 armhf 5.0-1 [327 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libgmpxx4ldbl armhf 2:6.3.0+dfsg-2 [328 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf libgmp-dev armhf 2:6.3.0+dfsg-2 [577 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-3 [901 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libklu1 armhf 1:5.12.0+dfsg-2 [51.8 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf libldl2 armhf 1:5.12.0+dfsg-2 [23.8 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libmongoose2 armhf 1:5.12.0+dfsg-2 [43.8 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libumfpack5 armhf 1:5.12.0+dfsg-2 [128 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf librbio2 armhf 1:5.12.0+dfsg-2 [32.9 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf libspqr2 armhf 1:5.12.0+dfsg-2 [68.2 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf libsliplu1 armhf 1:5.12.0+dfsg-2 [49.5 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf libsuitesparse-dev armhf 1:5.12.0+dfsg-2 [614 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf libglpk-dev armhf 5.0-1 [369 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.0.1-1 [2098 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libimagequant0 armhf 2.17.0-1 [28.0 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf libjs-sphinxdoc all 5.3.0-7 [131 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1 [24.4 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf liblcms2-2 armhf 2.14-2 [124 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-3 [133 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf libopenjp2-7 armhf 2.5.0-2 [164 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf libpython3.11 armhf 3.11.5-3 [1660 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-dev armhf 3.11.5-3 [3370 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf libpython3-dev armhf 3.11.4-5 [9432 B]
Get:117 http://172.17.4.1/private trixie-staging/main armhf libqhull-r8.0 armhf 2020.2-6 [216 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf libraqm0 armhf 0.10.1-1 [11.7 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf libsbml5 armhf 5.19.7+dfsg-2 [1702 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.2.4-0.3 [242 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-1 [298 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf libwebpdemux2 armhf 1.2.4-0.3 [98.5 kB]
Get:123 http://172.17.4.1/private trixie-staging/main armhf libwebpmux3 armhf 1.2.4-0.3 [106 kB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf libxslt1.1 armhf 1.1.35-1 [221 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf python-matplotlib-data all 3.6.3-1 [2744 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf python3-idna all 3.3-2 [39.1 kB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf python3-sniffio all 1.2.0-1 [6372 B]
Get:128 http://172.17.4.1/private trixie-staging/main armhf python3-typing-extensions all 4.7.1-2 [62.2 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf python3-anyio all 3.7.0-1 [55.7 kB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf python3-appdirs all 1.4.4-4 [12.5 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf python3-attr all 23.1.0-2 [67.1 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf python3-brotli armhf 1.0.9-2+b3 [278 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf python3-certifi all 2022.9.24-1 [153 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf python3-pkg-resources all 68.1.2-1 [241 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf python3-chardet all 5.2.0+dfsg-1 [107 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf python3-charset-normalizer all 3.2.0-1 [50.7 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf python3-colorama all 0.4.6-4 [36.2 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf python3-click all 8.1.6-1 [93.8 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf python3-numpy armhf 1:1.24.2-1 [3826 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf python3-contourpy armhf 1.0.7-1 [141 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf python3-cpuinfo all 5.0.0-5 [19.2 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf python3-cycler all 0.11.0-1 [8020 B]
Get:143 http://172.17.4.1/private trixie-staging/main armhf python3-six all 1.16.0-4 [17.5 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf python3-dateutil all 2.8.2-3 [78.4 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf python3-decorator all 5.1.1-5 [15.1 kB]
Get:146 http://172.17.4.1/private trixie-staging/main armhf python3-depinfo armhf 2.2.0-1 [11.6 kB]
Get:147 http://172.17.4.1/private trixie-staging/main armhf python3.11-dev armhf 3.11.5-3 [623 kB]
Get:148 http://172.17.4.1/private trixie-staging/main armhf python3-dev armhf 3.11.4-5 [26.2 kB]
Get:149 http://172.17.4.1/private trixie-staging/main armhf python3-diskcache all 5.4.0-3 [33.9 kB]
Get:150 http://172.17.4.1/private trixie-staging/main armhf python3-scipy armhf 1.10.1-2+rpi1 [13.6 MB]
Get:151 http://172.17.4.1/private trixie-staging/main armhf python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB]
Get:152 http://172.17.4.1/private trixie-staging/main armhf python3-mpmath all 1.2.1-2 [418 kB]
Get:153 http://172.17.4.1/private trixie-staging/main armhf python3-sympy all 1.12-3 [3868 kB]
Get:154 http://172.17.4.1/private trixie-staging/main armhf python3-tz all 2023.3-4 [30.8 kB]
Get:155 http://172.17.4.1/private trixie-staging/main armhf python3-fs all 2.4.16-2 [95.2 kB]
Get:156 http://172.17.4.1/private trixie-staging/main armhf python3-lxml armhf 4.9.3-1 [1039 kB]
Get:157 http://172.17.4.1/private trixie-staging/main armhf python3-lz4 armhf 4.0.2+dfsg-1+b1 [23.9 kB]
Get:158 http://172.17.4.1/private trixie-staging/main armhf python3-unicodedata2 armhf 14.0.0+ds2-1+b1 [298 kB]
Get:159 http://172.17.4.1/private trixie-staging/main armhf unicode-data all 15.0.0-1 [7984 kB]
Get:160 http://172.17.4.1/private trixie-staging/main armhf python3-fonttools armhf 4.38.0-1 [1047 kB]
Get:161 http://172.17.4.1/private trixie-staging/main armhf python3-future all 0.18.2-6 [348 kB]
Get:162 http://172.17.4.1/private trixie-staging/main armhf python3-h11 all 0.14.0-1 [50.1 kB]
Get:163 http://172.17.4.1/private trixie-staging/main armhf python3-httpcore all 0.17.3-1 [41.7 kB]
Get:164 http://172.17.4.1/private trixie-staging/main armhf python3-pygments all 2.15.1+dfsg-1 [817 kB]
Get:165 http://172.17.4.1/private trixie-staging/main armhf python3-mdurl all 0.1.2-1 [9444 B]
Get:166 http://172.17.4.1/private trixie-staging/main armhf python3-markdown-it all 3.0.0-2 [62.5 kB]
Get:167 http://172.17.4.1/private trixie-staging/main armhf python3-rich all 13.3.1-2 [198 kB]
Get:168 http://172.17.4.1/private trixie-staging/main armhf python3-rfc3986 all 1.5.0-3 [21.6 kB]
Get:169 http://172.17.4.1/private trixie-staging/main armhf python3-httpx all 0.23.3-1 [72.3 kB]
Get:170 http://172.17.4.1/private trixie-staging/main armhf python3-more-itertools all 10.1.0-1 [59.1 kB]
Get:171 http://172.17.4.1/private trixie-staging/main armhf python3-zipp all 1.0.0-6 [6696 B]
Get:172 http://172.17.4.1/private trixie-staging/main armhf python3-importlib-resources all 6.0.1-1 [21.7 kB]
Get:173 http://172.17.4.1/private trixie-staging/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get:174 http://172.17.4.1/private trixie-staging/main armhf python3-pyrsistent armhf 0.18.1-1+b1 [57.6 kB]
Get:175 http://172.17.4.1/private trixie-staging/main armhf python3-jsonschema all 4.10.3-2 [66.2 kB]
Get:176 http://172.17.4.1/private trixie-staging/main armhf python3-kiwisolver armhf 1.4.4-1 [52.3 kB]
Get:177 http://172.17.4.1/private trixie-staging/main armhf python3-pil armhf 10.0.0-1 [437 kB]
Get:178 http://172.17.4.1/private trixie-staging/main armhf python3-tk armhf 3.11.2-3 [95.2 kB]
Get:179 http://172.17.4.1/private trixie-staging/main armhf python3-pil.imagetk armhf 10.0.0-1 [75.2 kB]
Get:180 http://172.17.4.1/private trixie-staging/main armhf python3-pyparsing all 3.1.1-1 [145 kB]
Get:181 http://172.17.4.1/private trixie-staging/main armhf python3-packaging all 23.1-1 [37.4 kB]
Get:182 http://172.17.4.1/private trixie-staging/main armhf python3-matplotlib armhf 3.6.3-1 [7453 kB]
Get:183 http://172.17.4.1/private trixie-staging/main armhf python3-swiglpk armhf 5.0.8-1 [55.2 kB]
Get:184 http://172.17.4.1/private trixie-staging/main armhf python3-optlang all 1.7.0-1 [79.6 kB]
Get:185 http://172.17.4.1/private trixie-staging/main armhf python3-pandas-lib armhf 1.5.3+dfsg-2+rpi1 [2984 kB]
Get:186 http://172.17.4.1/private trixie-staging/main armhf python3-pandas all 1.5.3+dfsg-6 [2886 kB]
Get:187 http://172.17.4.1/private trixie-staging/main armhf python3-setuptools all 68.1.2-1 [468 kB]
Get:188 http://172.17.4.1/private trixie-staging/main armhf python3-wheel all 0.41.0-2 [53.3 kB]
Get:189 http://172.17.4.1/private trixie-staging/main armhf python3-pip all 23.2+dfsg-1 [1353 kB]
Get:190 http://172.17.4.1/private trixie-staging/main armhf python3-pipdeptree armhf 2.2.0-3 [20.6 kB]
Get:191 http://172.17.4.1/private trixie-staging/main armhf python3-pluggy all 1.3.0-1 [25.1 kB]
Get:192 http://172.17.4.1/private trixie-staging/main armhf python3-pydantic all 1.10.4-1 [171 kB]
Get:193 http://172.17.4.1/private trixie-staging/main armhf python3-pytest all 7.4.2-1 [238 kB]
Get:194 http://172.17.4.1/private trixie-staging/main armhf python3-pytest-benchmark all 4.0.0-2 [43.7 kB]
Get:195 http://172.17.4.1/private trixie-staging/main armhf python3-pytest-mock all 3.11.1-1 [17.1 kB]
Get:196 http://172.17.4.1/private trixie-staging/main armhf python3-urllib3 all 1.26.16-1 [115 kB]
Get:197 http://172.17.4.1/private trixie-staging/main armhf python3-requests all 2.31.0+dfsg-1 [68.6 kB]
Get:198 http://172.17.4.1/private trixie-staging/main armhf python3-ruamel.yaml.clib armhf 0.2.7-1+b1 [94.2 kB]
Get:199 http://172.17.4.1/private trixie-staging/main armhf python3-ruamel.yaml all 0.17.21-1 [103 kB]
Get:200 http://172.17.4.1/private trixie-staging/main armhf swig4.0 armhf 4.1.0-0.3 [1220 kB]
Get:201 http://172.17.4.1/private trixie-staging/main armhf swig all 4.1.0-0.3 [321 kB]
Get:202 http://172.17.4.1/private trixie-staging/main armhf python3-sbml5 armhf 5.19.7+dfsg-2 [2918 kB]
Get:203 http://172.17.4.1/private trixie-staging/main armhf python3-simplejson armhf 3.19.1-1 [57.8 kB]
Get:204 http://172.17.4.1/private trixie-staging/main armhf python3-tabulate all 0.8.9-1 [35.2 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 116 MB in 10s (11.6 MB/s)
Selecting previously unselected package libpython3.11-minimal:armhf.
(Reading database ... 11775 files and directories currently installed.)
Preparing to unpack .../libpython3.11-minimal_3.11.5-3_armhf.deb ...
Unpacking libpython3.11-minimal:armhf (3.11.5-3) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../libexpat1_2.5.0-2_armhf.deb ...
Unpacking libexpat1:armhf (2.5.0-2) ...
Selecting previously unselected package python3.11-minimal.
Preparing to unpack .../python3.11-minimal_3.11.5-3_armhf.deb ...
Unpacking python3.11-minimal (3.11.5-3) ...
Setting up libpython3.11-minimal:armhf (3.11.5-3) ...
Setting up libexpat1:armhf (2.5.0-2) ...
Setting up python3.11-minimal (3.11.5-3) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 12091 files and directories currently installed.)
Preparing to unpack .../python3-minimal_3.11.4-5_armhf.deb ...
Unpacking python3-minimal (3.11.4-5) ...
Selecting previously unselected package media-types.
Preparing to unpack .../media-types_10.1.0_all.deb ...
Unpacking media-types (10.1.0) ...
Selecting previously unselected package libpython3.11-stdlib:armhf.
Preparing to unpack .../libpython3.11-stdlib_3.11.5-3_armhf.deb ...
Unpacking libpython3.11-stdlib:armhf (3.11.5-3) ...
Selecting previously unselected package python3.11.
Preparing to unpack .../python3.11_3.11.5-3_armhf.deb ...
Unpacking python3.11 (3.11.5-3) ...
Selecting previously unselected package libpython3-stdlib:armhf.
Preparing to unpack .../libpython3-stdlib_3.11.4-5_armhf.deb ...
Unpacking libpython3-stdlib:armhf (3.11.4-5) ...
Setting up python3-minimal (3.11.4-5) ...
Selecting previously unselected package python3.
(Reading database ... 12499 files and directories currently installed.)
Preparing to unpack .../000-python3_3.11.4-5_armhf.deb ...
Unpacking python3 (3.11.4-5) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../001-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../002-groff-base_1.22.4-10_armhf.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../003-bsdextrautils_2.39.2-1_armhf.deb ...
Unpacking bsdextrautils (2.39.2-1) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../004-libpipeline1_1.5.7-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../005-man-db_2.11.2-3_armhf.deb ...
Unpacking man-db (2.11.2-3) ...
Selecting previously unselected package openssl.
Preparing to unpack .../006-openssl_3.0.10-1_armhf.deb ...
Unpacking openssl (3.0.10-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../007-ca-certificates_20230311_all.deb ...
Unpacking ca-certificates (20230311) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../008-libmagic-mgc_1%3a5.45-2_armhf.deb ...
Unpacking libmagic-mgc (1:5.45-2) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../009-libmagic1_1%3a5.45-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.45-2) ...
Selecting previously unselected package file.
Preparing to unpack .../010-file_1%3a5.45-2_armhf.deb ...
Unpacking file (1:5.45-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../011-gettext-base_0.21-12_armhf.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package m4.
Preparing to unpack .../012-m4_1.4.19-4_armhf.deb ...
Unpacking m4 (1.4.19-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../013-autoconf_2.71-3_all.deb ...
Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../014-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../015-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../016-autopoint_0.21-13_all.deb ...
Unpacking autopoint (0.21-13) ...
Selecting previously unselected package libtcl8.6:armhf.
Preparing to unpack .../017-libtcl8.6_8.6.13+dfsg-2_armhf.deb ...
Unpacking libtcl8.6:armhf (8.6.13+dfsg-2) ...
Selecting previously unselected package libbrotli1:armhf.
Preparing to unpack .../018-libbrotli1_1.0.9-2+b3_armhf.deb ...
Unpacking libbrotli1:armhf (1.0.9-2+b3) ...
Selecting previously unselected package libpng16-16:armhf.
Preparing to unpack .../019-libpng16-16_1.6.40-1_armhf.deb ...
Unpacking libpng16-16:armhf (1.6.40-1) ...
Selecting previously unselected package libfreetype6:armhf.
Preparing to unpack .../020-libfreetype6_2.13.2+dfsg-1_armhf.deb ...
Unpacking libfreetype6:armhf (2.13.2+dfsg-1) ...
Selecting previously unselected package fonts-dejavu-mono.
Preparing to unpack .../021-fonts-dejavu-mono_2.37-8_all.deb ...
Unpacking fonts-dejavu-mono (2.37-8) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../022-fonts-dejavu-core_2.37-8_all.deb ...
Unpacking fonts-dejavu-core (2.37-8) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../023-fontconfig-config_2.14.2-6_armhf.deb ...
Unpacking fontconfig-config (2.14.2-6) ...
Selecting previously unselected package libfontconfig1:armhf.
Preparing to unpack .../024-libfontconfig1_2.14.2-6_armhf.deb ...
Unpacking libfontconfig1:armhf (2.14.2-6) ...
Selecting previously unselected package libxau6:armhf.
Preparing to unpack .../025-libxau6_1%3a1.0.9-1_armhf.deb ...
Unpacking libxau6:armhf (1:1.0.9-1) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../026-libbsd0_0.11.7-4_armhf.deb ...
Unpacking libbsd0:armhf (0.11.7-4) ...
Selecting previously unselected package libxdmcp6:armhf.
Preparing to unpack .../027-libxdmcp6_1%3a1.1.2-3_armhf.deb ...
Unpacking libxdmcp6:armhf (1:1.1.2-3) ...
Selecting previously unselected package libxcb1:armhf.
Preparing to unpack .../028-libxcb1_1.15-1_armhf.deb ...
Unpacking libxcb1:armhf (1.15-1) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../029-libx11-data_2%3a1.8.6-1_all.deb ...
Unpacking libx11-data (2:1.8.6-1) ...
Selecting previously unselected package libx11-6:armhf.
Preparing to unpack .../030-libx11-6_2%3a1.8.6-1_armhf.deb ...
Unpacking libx11-6:armhf (2:1.8.6-1) ...
Selecting previously unselected package libxrender1:armhf.
Preparing to unpack .../031-libxrender1_1%3a0.9.10-1.1_armhf.deb ...
Unpacking libxrender1:armhf (1:0.9.10-1.1) ...
Selecting previously unselected package libxft2:armhf.
Preparing to unpack .../032-libxft2_2.3.6-1_armhf.deb ...
Unpacking libxft2:armhf (2.3.6-1) ...
Selecting previously unselected package libxext6:armhf.
Preparing to unpack .../033-libxext6_2%3a1.3.4-1_armhf.deb ...
Unpacking libxext6:armhf (2:1.3.4-1) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../034-x11-common_1%3a7.7+23_all.deb ...
Unpacking x11-common (1:7.7+23) ...
Selecting previously unselected package libxss1:armhf.
Preparing to unpack .../035-libxss1_1%3a1.2.3-1_armhf.deb ...
Unpacking libxss1:armhf (1:1.2.3-1) ...
Selecting previously unselected package libtk8.6:armhf.
Preparing to unpack .../036-libtk8.6_8.6.13-2_armhf.deb ...
Unpacking libtk8.6:armhf (8.6.13-2) ...
Selecting previously unselected package tk8.6-blt2.5.
Preparing to unpack .../037-tk8.6-blt2.5_2.5.3+dfsg-4.1_armhf.deb ...
Unpacking tk8.6-blt2.5 (2.5.3+dfsg-4.1) ...
Selecting previously unselected package blt.
Preparing to unpack .../038-blt_2.5.3+dfsg-4.1_armhf.deb ...
Unpacking blt (2.5.3+dfsg-4.1) ...
Selecting previously unselected package cython3.
Preparing to unpack .../039-cython3_0.29.36-1_armhf.deb ...
Unpacking cython3 (0.29.36-1) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../040-libdebhelper-perl_13.11.6_all.deb ...
Unpacking libdebhelper-perl (13.11.6) ...
Selecting previously unselected package libtool.
Preparing to unpack .../041-libtool_2.4.7-7_all.deb ...
Unpacking libtool (2.4.7-7) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../042-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../043-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../044-libsub-override-perl_0.09-4_all.deb ...
Unpacking libsub-override-perl (0.09-4) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../045-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../046-dh-strip-nondeterminism_1.13.1-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.13.1-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../047-libelf1_0.188-2.1+rpi1_armhf.deb ...
Unpacking libelf1:armhf (0.188-2.1+rpi1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../048-dwz_0.15-1_armhf.deb ...
Unpacking dwz (0.15-1) ...
Selecting previously unselected package libicu72:armhf.
Preparing to unpack .../049-libicu72_72.1-3_armhf.deb ...
Unpacking libicu72:armhf (72.1-3) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../050-libxml2_2.9.14+dfsg-1.3_armhf.deb ...
Unpacking libxml2:armhf (2.9.14+dfsg-1.3) ...
Selecting previously unselected package gettext.
Preparing to unpack .../051-gettext_0.21-12_armhf.deb ...
Unpacking gettext (0.21-12) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../052-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../053-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../054-debhelper_13.11.6_all.deb ...
Unpacking debhelper (13.11.6) ...
Selecting previously unselected package python3-lib2to3.
Preparing to unpack .../055-python3-lib2to3_3.11.5-1_all.deb ...
Unpacking python3-lib2to3 (3.11.5-1) ...
Selecting previously unselected package python3-distutils.
Preparing to unpack .../056-python3-distutils_3.11.5-1_all.deb ...
Unpacking python3-distutils (3.11.5-1) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../057-dh-python_6.20230825_all.deb ...
Unpacking dh-python (6.20230825) ...
Selecting previously unselected package fonts-lyx.
Preparing to unpack .../058-fonts-lyx_2.3.7-1_all.deb ...
Unpacking fonts-lyx (2.3.7-1) ...
Selecting previously unselected package libsuitesparseconfig5:armhf.
Preparing to unpack .../059-libsuitesparseconfig5_1%3a5.12.0+dfsg-2_armhf.deb ...
Unpacking libsuitesparseconfig5:armhf (1:5.12.0+dfsg-2) ...
Selecting previously unselected package libamd2:armhf.
Preparing to unpack .../060-libamd2_1%3a5.12.0+dfsg-2_armhf.deb ...
Unpacking libamd2:armhf (1:5.12.0+dfsg-2) ...
Selecting previously unselected package libblas3:armhf.
Preparing to unpack .../061-libblas3_3.11.0-2_armhf.deb ...
Unpacking libblas3:armhf (3.11.0-2) ...
Selecting previously unselected package libblas-dev:armhf.
Preparing to unpack .../062-libblas-dev_3.11.0-2_armhf.deb ...
Unpacking libblas-dev:armhf (3.11.0-2) ...
Selecting previously unselected package libbtf1:armhf.
Preparing to unpack .../063-libbtf1_1%3a5.12.0+dfsg-2_armhf.deb ...
Unpacking libbtf1:armhf (1:5.12.0+dfsg-2) ...
Selecting previously unselected package libcamd2:armhf.
Preparing to unpack .../064-libcamd2_1%3a5.12.0+dfsg-2_armhf.deb ...
Unpacking libcamd2:armhf (1:5.12.0+dfsg-2) ...
Selecting previously unselected package libccolamd2:armhf.
Preparing to unpack .../065-libccolamd2_1%3a5.12.0+dfsg-2_armhf.deb ...
Unpacking libccolamd2:armhf (1:5.12.0+dfsg-2) ...
Selecting previously unselected package libcolamd2:armhf.
Preparing to unpack .../066-libcolamd2_1%3a5.12.0+dfsg-2_armhf.deb ...
Unpacking libcolamd2:armhf (1:5.12.0+dfsg-2) ...
Selecting previously unselected package libgfortran5:armhf.
Preparing to unpack .../067-libgfortran5_12.2.0-14+rpi1_armhf.deb ...
Unpacking libgfortran5:armhf (12.2.0-14+rpi1) ...
Selecting previously unselected package liblapack3:armhf.
Preparing to unpack .../068-liblapack3_3.11.0-2_armhf.deb ...
Unpacking liblapack3:armhf (3.11.0-2) ...
Selecting previously unselected package libmetis5:armhf.
Preparing to unpack .../069-libmetis5_5.1.0.dfsg-7_armhf.deb ...
Unpacking libmetis5:armhf (5.1.0.dfsg-7) ...
Selecting previously unselected package libcholmod3:armhf.
Preparing to unpack .../070-libcholmod3_1%3a5.12.0+dfsg-2_armhf.deb ...
Unpacking libcholmod3:armhf (1:5.12.0+dfsg-2) ...
Selecting previously unselected package libcxsparse3:armhf.
Preparing to unpack .../071-libcxsparse3_1%3a5.12.0+dfsg-2_armhf.deb ...
Unpacking libcxsparse3:armhf (1:5.12.0+dfsg-2) ...
Selecting previously unselected package libdeflate0:armhf.
Preparing to unpack .../072-libdeflate0_1.18-1_armhf.deb ...
Unpacking libdeflate0:armhf (1.18-1) ...
Selecting previously unselected package libexpat1-dev:armhf.
Preparing to unpack .../073-libexpat1-dev_2.5.0-2_armhf.deb ...
Unpacking libexpat1-dev:armhf (2.5.0-2) ...
Selecting previously unselected package libfribidi0:armhf.
Preparing to unpack .../074-libfribidi0_1.0.13-3_armhf.deb ...
Unpacking libfribidi0:armhf (1.0.13-3) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../075-libglib2.0-0_2.74.6-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.74.6-1) ...
Selecting previously unselected package libltdl7:armhf.
Preparing to unpack .../076-libltdl7_2.4.7-7_armhf.deb ...
Unpacking libltdl7:armhf (2.4.7-7) ...
Selecting previously unselected package libglpk40:armhf.
Preparing to unpack .../077-libglpk40_5.0-1_armhf.deb ...
Unpacking libglpk40:armhf (5.0-1) ...
Selecting previously unselected package libgmpxx4ldbl:armhf.
Preparing to unpack .../078-libgmpxx4ldbl_2%3a6.3.0+dfsg-2_armhf.deb ...
Unpacking libgmpxx4ldbl:armhf (2:6.3.0+dfsg-2) ...
Selecting previously unselected package libgmp-dev:armhf.
Preparing to unpack .../079-libgmp-dev_2%3a6.3.0+dfsg-2_armhf.deb ...
Unpacking libgmp-dev:armhf (2:6.3.0+dfsg-2) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../080-zlib1g-dev_1%3a1.2.13.dfsg-3_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.13.dfsg-3) ...
Selecting previously unselected package libklu1:armhf.
Preparing to unpack .../081-libklu1_1%3a5.12.0+dfsg-2_armhf.deb ...
Unpacking libklu1:armhf (1:5.12.0+dfsg-2) ...
Selecting previously unselected package libldl2:armhf.
Preparing to unpack .../082-libldl2_1%3a5.12.0+dfsg-2_armhf.deb ...
Unpacking libldl2:armhf (1:5.12.0+dfsg-2) ...
Selecting previously unselected package libmongoose2:armhf.
Preparing to unpack .../083-libmongoose2_1%3a5.12.0+dfsg-2_armhf.deb ...
Unpacking libmongoose2:armhf (1:5.12.0+dfsg-2) ...
Selecting previously unselected package libumfpack5:armhf.
Preparing to unpack .../084-libumfpack5_1%3a5.12.0+dfsg-2_armhf.deb ...
Unpacking libumfpack5:armhf (1:5.12.0+dfsg-2) ...
Selecting previously unselected package librbio2:armhf.
Preparing to unpack .../085-librbio2_1%3a5.12.0+dfsg-2_armhf.deb ...
Unpacking librbio2:armhf (1:5.12.0+dfsg-2) ...
Selecting previously unselected package libspqr2:armhf.
Preparing to unpack .../086-libspqr2_1%3a5.12.0+dfsg-2_armhf.deb ...
Unpacking libspqr2:armhf (1:5.12.0+dfsg-2) ...
Selecting previously unselected package libsliplu1:armhf.
Preparing to unpack .../087-libsliplu1_1%3a5.12.0+dfsg-2_armhf.deb ...
Unpacking libsliplu1:armhf (1:5.12.0+dfsg-2) ...
Selecting previously unselected package liblapack-dev:armhf.
Preparing to unpack .../088-liblapack-dev_3.11.0-2_armhf.deb ...
Unpacking liblapack-dev:armhf (3.11.0-2) ...
Selecting previously unselected package libsuitesparse-dev:armhf.
Preparing to unpack .../089-libsuitesparse-dev_1%3a5.12.0+dfsg-2_armhf.deb ...
Unpacking libsuitesparse-dev:armhf (1:5.12.0+dfsg-2) ...
Selecting previously unselected package libglpk-dev:armhf.
Preparing to unpack .../090-libglpk-dev_5.0-1_armhf.deb ...
Unpacking libglpk-dev:armhf (5.0-1) ...
Selecting previously unselected package libgraphite2-3:armhf.
Preparing to unpack .../091-libgraphite2-3_1.3.14-1_armhf.deb ...
Unpacking libgraphite2-3:armhf (1.3.14-1) ...
Selecting previously unselected package libharfbuzz0b:armhf.
Preparing to unpack .../092-libharfbuzz0b_8.0.1-1_armhf.deb ...
Unpacking libharfbuzz0b:armhf (8.0.1-1) ...
Selecting previously unselected package libimagequant0:armhf.
Preparing to unpack .../093-libimagequant0_2.17.0-1_armhf.deb ...
Unpacking libimagequant0:armhf (2.17.0-1) ...
Selecting previously unselected package libjbig0:armhf.
Preparing to unpack .../094-libjbig0_2.1-6.1_armhf.deb ...
Unpacking libjbig0:armhf (2.1-6.1) ...
Selecting previously unselected package libjpeg62-turbo:armhf.
Preparing to unpack .../095-libjpeg62-turbo_1%3a2.1.5-2_armhf.deb ...
Unpacking libjpeg62-turbo:armhf (1:2.1.5-2) ...
Selecting previously unselected package libjs-jquery.
Preparing to unpack .../096-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Selecting previously unselected package libjs-jquery-ui.
Preparing to unpack .../097-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
Selecting previously unselected package libjs-underscore.
Preparing to unpack .../098-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ...
Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Selecting previously unselected package libjs-sphinxdoc.
Preparing to unpack .../099-libjs-sphinxdoc_5.3.0-7_all.deb ...
Unpacking libjs-sphinxdoc (5.3.0-7) ...
Selecting previously unselected package liblbfgsb0:armhf.
Preparing to unpack .../100-liblbfgsb0_3.0+dfsg.4-1_armhf.deb ...
Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1) ...
Selecting previously unselected package liblcms2-2:armhf.
Preparing to unpack .../101-liblcms2-2_2.14-2_armhf.deb ...
Unpacking liblcms2-2:armhf (2.14-2) ...
Selecting previously unselected package liblerc4:armhf.
Preparing to unpack .../102-liblerc4_4.0.0+ds-3_armhf.deb ...
Unpacking liblerc4:armhf (4.0.0+ds-3) ...
Selecting previously unselected package libopenjp2-7:armhf.
Preparing to unpack .../103-libopenjp2-7_2.5.0-2_armhf.deb ...
Unpacking libopenjp2-7:armhf (2.5.0-2) ...
Selecting previously unselected package libpython3.11:armhf.
Preparing to unpack .../104-libpython3.11_3.11.5-3_armhf.deb ...
Unpacking libpython3.11:armhf (3.11.5-3) ...
Selecting previously unselected package libpython3.11-dev:armhf.
Preparing to unpack .../105-libpython3.11-dev_3.11.5-3_armhf.deb ...
Unpacking libpython3.11-dev:armhf (3.11.5-3) ...
Selecting previously unselected package libpython3-dev:armhf.
Preparing to unpack .../106-libpython3-dev_3.11.4-5_armhf.deb ...
Unpacking libpython3-dev:armhf (3.11.4-5) ...
Selecting previously unselected package libqhull-r8.0:armhf.
Preparing to unpack .../107-libqhull-r8.0_2020.2-6_armhf.deb ...
Unpacking libqhull-r8.0:armhf (2020.2-6) ...
Selecting previously unselected package libraqm0:armhf.
Preparing to unpack .../108-libraqm0_0.10.1-1_armhf.deb ...
Unpacking libraqm0:armhf (0.10.1-1) ...
Selecting previously unselected package libsbml5:armhf.
Preparing to unpack .../109-libsbml5_5.19.7+dfsg-2_armhf.deb ...
Unpacking libsbml5:armhf (5.19.7+dfsg-2) ...
Selecting previously unselected package libwebp7:armhf.
Preparing to unpack .../110-libwebp7_1.2.4-0.3_armhf.deb ...
Unpacking libwebp7:armhf (1.2.4-0.3) ...
Selecting previously unselected package libtiff6:armhf.
Preparing to unpack .../111-libtiff6_4.5.1+git230720-1_armhf.deb ...
Unpacking libtiff6:armhf (4.5.1+git230720-1) ...
Selecting previously unselected package libwebpdemux2:armhf.
Preparing to unpack .../112-libwebpdemux2_1.2.4-0.3_armhf.deb ...
Unpacking libwebpdemux2:armhf (1.2.4-0.3) ...
Selecting previously unselected package libwebpmux3:armhf.
Preparing to unpack .../113-libwebpmux3_1.2.4-0.3_armhf.deb ...
Unpacking libwebpmux3:armhf (1.2.4-0.3) ...
Selecting previously unselected package libxslt1.1:armhf.
Preparing to unpack .../114-libxslt1.1_1.1.35-1_armhf.deb ...
Unpacking libxslt1.1:armhf (1.1.35-1) ...
Selecting previously unselected package python-matplotlib-data.
Preparing to unpack .../115-python-matplotlib-data_3.6.3-1_all.deb ...
Unpacking python-matplotlib-data (3.6.3-1) ...
Selecting previously unselected package python3-idna.
Preparing to unpack .../116-python3-idna_3.3-2_all.deb ...
Unpacking python3-idna (3.3-2) ...
Selecting previously unselected package python3-sniffio.
Preparing to unpack .../117-python3-sniffio_1.2.0-1_all.deb ...
Unpacking python3-sniffio (1.2.0-1) ...
Selecting previously unselected package python3-typing-extensions.
Preparing to unpack .../118-python3-typing-extensions_4.7.1-2_all.deb ...
Unpacking python3-typing-extensions (4.7.1-2) ...
Selecting previously unselected package python3-anyio.
Preparing to unpack .../119-python3-anyio_3.7.0-1_all.deb ...
Unpacking python3-anyio (3.7.0-1) ...
Selecting previously unselected package python3-appdirs.
Preparing to unpack .../120-python3-appdirs_1.4.4-4_all.deb ...
Unpacking python3-appdirs (1.4.4-4) ...
Selecting previously unselected package python3-attr.
Preparing to unpack .../121-python3-attr_23.1.0-2_all.deb ...
Unpacking python3-attr (23.1.0-2) ...
Selecting previously unselected package python3-brotli.
Preparing to unpack .../122-python3-brotli_1.0.9-2+b3_armhf.deb ...
Unpacking python3-brotli (1.0.9-2+b3) ...
Selecting previously unselected package python3-certifi.
Preparing to unpack .../123-python3-certifi_2022.9.24-1_all.deb ...
Unpacking python3-certifi (2022.9.24-1) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../124-python3-pkg-resources_68.1.2-1_all.deb ...
Unpacking python3-pkg-resources (68.1.2-1) ...
Selecting previously unselected package python3-chardet.
Preparing to unpack .../125-python3-chardet_5.2.0+dfsg-1_all.deb ...
Unpacking python3-chardet (5.2.0+dfsg-1) ...
Selecting previously unselected package python3-charset-normalizer.
Preparing to unpack .../126-python3-charset-normalizer_3.2.0-1_all.deb ...
Unpacking python3-charset-normalizer (3.2.0-1) ...
Selecting previously unselected package python3-colorama.
Preparing to unpack .../127-python3-colorama_0.4.6-4_all.deb ...
Unpacking python3-colorama (0.4.6-4) ...
Selecting previously unselected package python3-click.
Preparing to unpack .../128-python3-click_8.1.6-1_all.deb ...
Unpacking python3-click (8.1.6-1) ...
Selecting previously unselected package python3-numpy.
Preparing to unpack .../129-python3-numpy_1%3a1.24.2-1_armhf.deb ...
Unpacking python3-numpy (1:1.24.2-1) ...
Selecting previously unselected package python3-contourpy.
Preparing to unpack .../130-python3-contourpy_1.0.7-1_armhf.deb ...
Unpacking python3-contourpy (1.0.7-1) ...
Selecting previously unselected package python3-cpuinfo.
Preparing to unpack .../131-python3-cpuinfo_5.0.0-5_all.deb ...
Unpacking python3-cpuinfo (5.0.0-5) ...
Selecting previously unselected package python3-cycler.
Preparing to unpack .../132-python3-cycler_0.11.0-1_all.deb ...
Unpacking python3-cycler (0.11.0-1) ...
Selecting previously unselected package python3-six.
Preparing to unpack .../133-python3-six_1.16.0-4_all.deb ...
Unpacking python3-six (1.16.0-4) ...
Selecting previously unselected package python3-dateutil.
Preparing to unpack .../134-python3-dateutil_2.8.2-3_all.deb ...
Unpacking python3-dateutil (2.8.2-3) ...
Selecting previously unselected package python3-decorator.
Preparing to unpack .../135-python3-decorator_5.1.1-5_all.deb ...
Unpacking python3-decorator (5.1.1-5) ...
Selecting previously unselected package python3-depinfo.
Preparing to unpack .../136-python3-depinfo_2.2.0-1_armhf.deb ...
Unpacking python3-depinfo (2.2.0-1) ...
Selecting previously unselected package python3.11-dev.
Preparing to unpack .../137-python3.11-dev_3.11.5-3_armhf.deb ...
Unpacking python3.11-dev (3.11.5-3) ...
Selecting previously unselected package python3-dev.
Preparing to unpack .../138-python3-dev_3.11.4-5_armhf.deb ...
Unpacking python3-dev (3.11.4-5) ...
Selecting previously unselected package python3-diskcache.
Preparing to unpack .../139-python3-diskcache_5.4.0-3_all.deb ...
Unpacking python3-diskcache (5.4.0-3) ...
Selecting previously unselected package python3-scipy.
Preparing to unpack .../140-python3-scipy_1.10.1-2+rpi1_armhf.deb ...
Unpacking python3-scipy (1.10.1-2+rpi1) ...
Selecting previously unselected package python3-ufolib2.
Preparing to unpack .../141-python3-ufolib2_0.14.0+dfsg1-1_all.deb ...
Unpacking python3-ufolib2 (0.14.0+dfsg1-1) ...
Selecting previously unselected package python3-mpmath.
Preparing to unpack .../142-python3-mpmath_1.2.1-2_all.deb ...
Unpacking python3-mpmath (1.2.1-2) ...
Selecting previously unselected package python3-sympy.
Preparing to unpack .../143-python3-sympy_1.12-3_all.deb ...
Unpacking python3-sympy (1.12-3) ...
Selecting previously unselected package python3-tz.
Preparing to unpack .../144-python3-tz_2023.3-4_all.deb ...
Unpacking python3-tz (2023.3-4) ...
Selecting previously unselected package python3-fs.
Preparing to unpack .../145-python3-fs_2.4.16-2_all.deb ...
Unpacking python3-fs (2.4.16-2) ...
Selecting previously unselected package python3-lxml:armhf.
Preparing to unpack .../146-python3-lxml_4.9.3-1_armhf.deb ...
Unpacking python3-lxml:armhf (4.9.3-1) ...
Selecting previously unselected package python3-lz4.
Preparing to unpack .../147-python3-lz4_4.0.2+dfsg-1+b1_armhf.deb ...
Unpacking python3-lz4 (4.0.2+dfsg-1+b1) ...
Selecting previously unselected package python3-unicodedata2.
Preparing to unpack .../148-python3-unicodedata2_14.0.0+ds2-1+b1_armhf.deb ...
Unpacking python3-unicodedata2 (14.0.0+ds2-1+b1) ...
Selecting previously unselected package unicode-data.
Preparing to unpack .../149-unicode-data_15.0.0-1_all.deb ...
Unpacking unicode-data (15.0.0-1) ...
Selecting previously unselected package python3-fonttools.
Preparing to unpack .../150-python3-fonttools_4.38.0-1_armhf.deb ...
Unpacking python3-fonttools (4.38.0-1) ...
Selecting previously unselected package python3-future.
Preparing to unpack .../151-python3-future_0.18.2-6_all.deb ...
Unpacking python3-future (0.18.2-6) ...
Selecting previously unselected package python3-h11.
Preparing to unpack .../152-python3-h11_0.14.0-1_all.deb ...
Unpacking python3-h11 (0.14.0-1) ...
Selecting previously unselected package python3-httpcore.
Preparing to unpack .../153-python3-httpcore_0.17.3-1_all.deb ...
Unpacking python3-httpcore (0.17.3-1) ...
Selecting previously unselected package python3-pygments.
Preparing to unpack .../154-python3-pygments_2.15.1+dfsg-1_all.deb ...
Unpacking python3-pygments (2.15.1+dfsg-1) ...
Selecting previously unselected package python3-mdurl.
Preparing to unpack .../155-python3-mdurl_0.1.2-1_all.deb ...
Unpacking python3-mdurl (0.1.2-1) ...
Selecting previously unselected package python3-markdown-it.
Preparing to unpack .../156-python3-markdown-it_3.0.0-2_all.deb ...
Unpacking python3-markdown-it (3.0.0-2) ...
Selecting previously unselected package python3-rich.
Preparing to unpack .../157-python3-rich_13.3.1-2_all.deb ...
Unpacking python3-rich (13.3.1-2) ...
Selecting previously unselected package python3-rfc3986.
Preparing to unpack .../158-python3-rfc3986_1.5.0-3_all.deb ...
Unpacking python3-rfc3986 (1.5.0-3) ...
Selecting previously unselected package python3-httpx.
Preparing to unpack .../159-python3-httpx_0.23.3-1_all.deb ...
Unpacking python3-httpx (0.23.3-1) ...
Selecting previously unselected package python3-more-itertools.
Preparing to unpack .../160-python3-more-itertools_10.1.0-1_all.deb ...
Unpacking python3-more-itertools (10.1.0-1) ...
Selecting previously unselected package python3-zipp.
Preparing to unpack .../161-python3-zipp_1.0.0-6_all.deb ...
Unpacking python3-zipp (1.0.0-6) ...
Selecting previously unselected package python3-importlib-resources.
Preparing to unpack .../162-python3-importlib-resources_6.0.1-1_all.deb ...
Unpacking python3-importlib-resources (6.0.1-1) ...
Selecting previously unselected package python3-iniconfig.
Preparing to unpack .../163-python3-iniconfig_1.1.1-2_all.deb ...
Unpacking python3-iniconfig (1.1.1-2) ...
Selecting previously unselected package python3-pyrsistent:armhf.
Preparing to unpack .../164-python3-pyrsistent_0.18.1-1+b1_armhf.deb ...
Unpacking python3-pyrsistent:armhf (0.18.1-1+b1) ...
Selecting previously unselected package python3-jsonschema.
Preparing to unpack .../165-python3-jsonschema_4.10.3-2_all.deb ...
Unpacking python3-jsonschema (4.10.3-2) ...
Selecting previously unselected package python3-kiwisolver.
Preparing to unpack .../166-python3-kiwisolver_1.4.4-1_armhf.deb ...
Unpacking python3-kiwisolver (1.4.4-1) ...
Selecting previously unselected package python3-pil:armhf.
Preparing to unpack .../167-python3-pil_10.0.0-1_armhf.deb ...
Unpacking python3-pil:armhf (10.0.0-1) ...
Selecting previously unselected package python3-tk:armhf.
Preparing to unpack .../168-python3-tk_3.11.2-3_armhf.deb ...
Unpacking python3-tk:armhf (3.11.2-3) ...
Selecting previously unselected package python3-pil.imagetk:armhf.
Preparing to unpack .../169-python3-pil.imagetk_10.0.0-1_armhf.deb ...
Unpacking python3-pil.imagetk:armhf (10.0.0-1) ...
Selecting previously unselected package python3-pyparsing.
Preparing to unpack .../170-python3-pyparsing_3.1.1-1_all.deb ...
Unpacking python3-pyparsing (3.1.1-1) ...
Selecting previously unselected package python3-packaging.
Preparing to unpack .../171-python3-packaging_23.1-1_all.deb ...
Unpacking python3-packaging (23.1-1) ...
Selecting previously unselected package python3-matplotlib.
Preparing to unpack .../172-python3-matplotlib_3.6.3-1_armhf.deb ...
Unpacking python3-matplotlib (3.6.3-1) ...
Selecting previously unselected package python3-swiglpk.
Preparing to unpack .../173-python3-swiglpk_5.0.8-1_armhf.deb ...
Unpacking python3-swiglpk (5.0.8-1) ...
Selecting previously unselected package python3-optlang.
Preparing to unpack .../174-python3-optlang_1.7.0-1_all.deb ...
Unpacking python3-optlang (1.7.0-1) ...
Selecting previously unselected package python3-pandas-lib:armhf.
Preparing to unpack .../175-python3-pandas-lib_1.5.3+dfsg-2+rpi1_armhf.deb ...
Unpacking python3-pandas-lib:armhf (1.5.3+dfsg-2+rpi1) ...
Selecting previously unselected package python3-pandas.
Preparing to unpack .../176-python3-pandas_1.5.3+dfsg-6_all.deb ...
Unpacking python3-pandas (1.5.3+dfsg-6) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../177-python3-setuptools_68.1.2-1_all.deb ...
Unpacking python3-setuptools (68.1.2-1) ...
Selecting previously unselected package python3-wheel.
Preparing to unpack .../178-python3-wheel_0.41.0-2_all.deb ...
Unpacking python3-wheel (0.41.0-2) ...
Selecting previously unselected package python3-pip.
Preparing to unpack .../179-python3-pip_23.2+dfsg-1_all.deb ...
Unpacking python3-pip (23.2+dfsg-1) ...
Selecting previously unselected package python3-pipdeptree.
Preparing to unpack .../180-python3-pipdeptree_2.2.0-3_armhf.deb ...
Unpacking python3-pipdeptree (2.2.0-3) ...
Selecting previously unselected package python3-pluggy.
Preparing to unpack .../181-python3-pluggy_1.3.0-1_all.deb ...
Unpacking python3-pluggy (1.3.0-1) ...
Selecting previously unselected package python3-pydantic.
Preparing to unpack .../182-python3-pydantic_1.10.4-1_all.deb ...
Unpacking python3-pydantic (1.10.4-1) ...
Selecting previously unselected package python3-pytest.
Preparing to unpack .../183-python3-pytest_7.4.2-1_all.deb ...
Unpacking python3-pytest (7.4.2-1) ...
Selecting previously unselected package python3-pytest-benchmark.
Preparing to unpack .../184-python3-pytest-benchmark_4.0.0-2_all.deb ...
Unpacking python3-pytest-benchmark (4.0.0-2) ...
Selecting previously unselected package python3-pytest-mock.
Preparing to unpack .../185-python3-pytest-mock_3.11.1-1_all.deb ...
Unpacking python3-pytest-mock (3.11.1-1) ...
Selecting previously unselected package python3-urllib3.
Preparing to unpack .../186-python3-urllib3_1.26.16-1_all.deb ...
Unpacking python3-urllib3 (1.26.16-1) ...
Selecting previously unselected package python3-requests.
Preparing to unpack .../187-python3-requests_2.31.0+dfsg-1_all.deb ...
Unpacking python3-requests (2.31.0+dfsg-1) ...
Selecting previously unselected package python3-ruamel.yaml.clib:armhf.
Preparing to unpack .../188-python3-ruamel.yaml.clib_0.2.7-1+b1_armhf.deb ...
Unpacking python3-ruamel.yaml.clib:armhf (0.2.7-1+b1) ...
Selecting previously unselected package python3-ruamel.yaml.
Preparing to unpack .../189-python3-ruamel.yaml_0.17.21-1_all.deb ...
Unpacking python3-ruamel.yaml (0.17.21-1) ...
Selecting previously unselected package swig4.0.
Preparing to unpack .../190-swig4.0_4.1.0-0.3_armhf.deb ...
Unpacking swig4.0 (4.1.0-0.3) ...
Selecting previously unselected package swig.
Preparing to unpack .../191-swig_4.1.0-0.3_all.deb ...
Unpacking swig (4.1.0-0.3) ...
Selecting previously unselected package python3-sbml5.
Preparing to unpack .../192-python3-sbml5_5.19.7+dfsg-2_armhf.deb ...
Unpacking python3-sbml5 (5.19.7+dfsg-2) ...
Selecting previously unselected package python3-simplejson.
Preparing to unpack .../193-python3-simplejson_3.19.1-1_armhf.deb ...
Unpacking python3-simplejson (3.19.1-1) ...
Selecting previously unselected package python3-tabulate.
Preparing to unpack .../194-python3-tabulate_0.8.9-1_all.deb ...
Unpacking python3-tabulate (0.8.9-1) ...
Selecting previously unselected package sbuild-build-depends-python-cobra-dummy.
Preparing to unpack .../195-sbuild-build-depends-python-cobra-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-python-cobra-dummy (0.invalid.0) ...
Setting up media-types (10.1.0) ...
Setting up libpipeline1:armhf (1.5.7-1) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up liblcms2-2:armhf (2.14-2) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libicu72:armhf (72.1-3) ...
Setting up liblerc4:armhf (4.0.0+ds-3) ...
Setting up bsdextrautils (2.39.2-1) ...
Setting up libmagic-mgc (1:5.45-2) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.74.6-1) ...
No schema files found: doing nothing.
Setting up fonts-lyx (2.3.7-1) ...
Setting up libpython3.11-stdlib:armhf (3.11.5-3) ...
Setting up libdebhelper-perl (13.11.6) ...
Setting up libbrotli1:armhf (1.0.9-2+b3) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libldl2:armhf (1:5.12.0+dfsg-2) ...
Setting up libmagic1:armhf (1:5.45-2) ...
Setting up libdeflate0:armhf (1.18-1) ...
Setting up gettext-base (0.21-12) ...
Setting up m4 (1.4.19-4) ...
Setting up libqhull-r8.0:armhf (2020.2-6) ...
Setting up libmetis5:armhf (5.1.0.dfsg-7) ...
Setting up file (1:5.45-2) ...
Setting up libjbig0:armhf (2.1-6.1) ...
Setting up libbtf1:armhf (1:5.12.0+dfsg-2) ...
Setting up unicode-data (15.0.0-1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libgmpxx4ldbl:armhf (2:6.3.0+dfsg-2) ...
Setting up libexpat1-dev:armhf (2.5.0-2) ...
Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ...
Setting up libx11-data (2:1.8.6-1) ...
Setting up libfribidi0:armhf (1.0.13-3) ...
Setting up libimagequant0:armhf (2.17.0-1) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16:armhf (1.6.40-1) ...
Setting up libtcl8.6:armhf (8.6.13+dfsg-2) ...
Setting up autopoint (0.21-13) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up libltdl7:armhf (2.4.7-7) ...
Setting up libgfortran5:armhf (12.2.0-14+rpi1) ...
Setting up autoconf (2.71-3) ...
Setting up libwebp7:armhf (1.2.4-0.3) ...
Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-3) ...
Setting up libtiff6:armhf (4.5.1+git230720-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libopenjp2-7:armhf (2.5.0-2) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libcxsparse3:armhf (1:5.12.0+dfsg-2) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up swig4.0 (4.1.0-0.3) ...
Setting up python-matplotlib-data (3.6.3-1) ...
Setting up openssl (3.0.10-1) ...
Setting up libwebpmux3:armhf (1.2.4-0.3) ...
Setting up libbsd0:armhf (0.11.7-4) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up libsuitesparseconfig5:armhf (1:5.12.0+dfsg-2) ...
Setting up libblas-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up librbio2:armhf (1:5.12.0+dfsg-2) ...
Setting up libpython3-stdlib:armhf (3.11.4-5) ...
Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up libamd2:armhf (1:5.12.0+dfsg-2) ...
Setting up python3.11 (3.11.5-3) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-12) ...
Setting up swig (4.1.0-0.3) ...
Setting up libgmp-dev:armhf (2:6.3.0+dfsg-2) ...
Setting up libcolamd2:armhf (1:5.12.0+dfsg-2) ...
Setting up libpython3.11:armhf (3.11.5-3) ...
Setting up libtool (2.4.7-7) ...
Setting up fontconfig-config (2.14.2-6) ...
Setting up libwebpdemux2:armhf (1.2.4-0.3) ...
Setting up python3 (3.11.4-5) ...
Setting up python3-sbml5 (5.19.7+dfsg-2) ...
Setting up python3-tz (2023.3-4) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up libsliplu1:armhf (1:5.12.0+dfsg-2) ...
Setting up python3-six (1.16.0-4) ...
Setting up python3-simplejson (3.19.1-1) ...
Setting up dh-autoreconf (20) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up libcamd2:armhf (1:5.12.0+dfsg-2) ...
Setting up libmongoose2:armhf (1:5.12.0+dfsg-2) ...
Setting up python3-decorator (5.1.1-5) ...
Setting up python3-packaging (23.1-1) ...
Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
Setting up python3-pyparsing (3.1.1-1) ...
Setting up libfreetype6:armhf (2.13.2+dfsg-1) ...
Setting up python3-certifi (2022.9.24-1) ...
Setting up libglpk40:armhf (5.0-1) ...
Setting up libpython3.11-dev:armhf (3.11.5-3) ...
Setting up libsbml5:armhf (5.19.7+dfsg-2) ...
Setting up python3-brotli (1.0.9-2+b3) ...
Setting up python3-mdurl (0.1.2-1) ...
Setting up python3-cycler (0.11.0-1) ...
Setting up python3-kiwisolver (1.4.4-1) ...
Setting up liblapack-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up python3-idna (3.3-2) ...
Setting up cython3 (0.29.36-1) ...
Setting up python3-h11 (0.14.0-1) ...
Setting up python3-typing-extensions (4.7.1-2) ...
Setting up python3-cpuinfo (5.0.0-5) ...
Setting up libjs-sphinxdoc (5.3.0-7) ...
Setting up python3-urllib3 (1.26.16-1) ...
Setting up python3-pluggy (1.3.0-1) ...
Setting up python3-markdown-it (3.0.0-2) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up python3-pyrsistent:armhf (0.18.1-1+b1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up libklu1:armhf (1:5.12.0+dfsg-2) ...
Setting up libccolamd2:armhf (1:5.12.0+dfsg-2) ...
Setting up libxslt1.1:armhf (1.1.35-1) ...
Setting up libx11-6:armhf (2:1.8.6-1) ...
Setting up libharfbuzz0b:armhf (8.0.1-1) ...
Setting up python3-dateutil (2.8.2-3) ...
Setting up python3-mpmath (1.2.1-2) ...
Setting up python3-diskcache (5.4.0-3) ...
Setting up python3-lib2to3 (3.11.5-1) ...
Setting up python3-appdirs (1.4.4-4) ...
Setting up python3-swiglpk (5.0.8-1) ...
Setting up libcholmod3:armhf (1:5.12.0+dfsg-2) ...
Setting up liblbfgsb0:armhf (3.0+dfsg.4-1) ...
Setting up python3-pkg-resources (68.1.2-1) ...
Setting up python3-distutils (3.11.5-1) ...
Setting up dh-python (6.20230825) ...
Setting up python3-more-itertools (10.1.0-1) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up python3-sniffio (1.2.0-1) ...
Setting up python3-sympy (1.12-3) ...
Setting up python3-attr (23.1.0-2) ...
Setting up libspqr2:armhf (1:5.12.0+dfsg-2) ...
Setting up libpython3-dev:armhf (3.11.4-5) ...
Setting up python3-setuptools (68.1.2-1) ...
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up python3-anyio (3.7.0-1) ...
Setting up python3-colorama (0.4.6-4) ...
Setting up python3-lz4 (4.0.2+dfsg-1+b1) ...
Setting up python3.11-dev (3.11.5-3) ...
Setting up python3-charset-normalizer (3.2.0-1) ...
Setting up python3-pytest (7.4.2-1) ...
Setting up python3-unicodedata2 (14.0.0+ds2-1+b1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up python3-ruamel.yaml.clib:armhf (0.2.7-1+b1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up python3-tabulate (0.8.9-1) ...
Setting up python3-zipp (1.0.0-6) ...
Setting up python3-click (8.1.6-1) ...
Setting up man-db (2.11.2-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-wheel (0.41.0-2) ...
Setting up python3-fs (2.4.16-2) ...
Setting up python3-pygments (2.15.1+dfsg-1) ...
Setting up python3-chardet (5.2.0+dfsg-1) ...
Setting up libumfpack5:armhf (1:5.12.0+dfsg-2) ...
Setting up python3-rfc3986 (1.5.0-3) ...
Setting up python3-jsonschema (4.10.3-2) ...
Setting up python3-pydantic (1.10.4-1) ...
Setting up libraqm0:armhf (0.10.1-1) ...
Setting up python3-dev (3.11.4-5) ...
Setting up python3-requests (2.31.0+dfsg-1) ...
Setting up python3-depinfo (2.2.0-1) ...
Setting up python3-pip (23.2+dfsg-1) ...
Setting up python3-numpy (1:1.24.2-1) ...
Setting up python3-ruamel.yaml (0.17.21-1) ...
Setting up python3-pytest-mock (3.11.1-1) ...
Setting up python3-lxml:armhf (4.9.3-1) ...
Setting up python3-contourpy (1.0.7-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up python3-future (0.18.2-6) ...
update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode
update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode
Setting up python3-pipdeptree (2.2.0-3) ...
Setting up python3-optlang (1.7.0-1) ...
Setting up python3-pytest-benchmark (4.0.0-2) ...
Setting up python3-httpcore (0.17.3-1) ...
Setting up python3-scipy (1.10.1-2+rpi1) ...
Setting up libsuitesparse-dev:armhf (1:5.12.0+dfsg-2) ...
Setting up python3-importlib-resources (6.0.1-1) ...
Setting up python3-rich (13.3.1-2) ...
Setting up python3-pandas-lib:armhf (1.5.3+dfsg-2+rpi1) ...
Setting up debhelper (13.11.6) ...
Setting up python3-pandas (1.5.3+dfsg-6) ...
Setting up python3-httpx (0.23.3-1) ...
Setting up libglpk-dev:armhf (5.0-1) ...
Setting up python3-fonttools (4.38.0-1) ...
Setting up python3-ufolib2 (0.14.0+dfsg1-1) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.14.2-6) ...
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libtk8.6:armhf (8.6.13-2) ...
Processing triggers for libc-bin (2.36-9+rpi1+deb12u1) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ...
Setting up blt (2.5.3+dfsg-4.1) ...
Setting up python3-tk:armhf (3.11.2-3) ...
Setting up python3-pil.imagetk:armhf (10.0.0-1) ...
Setting up python3-pil:armhf (10.0.0-1) ...
Setting up python3-matplotlib (3.6.3-1) ...
Setting up sbuild-build-depends-python-cobra-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.36-9+rpi1+deb12u1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.40-2+rpi2 dpkg-dev_1.21.22+rpi1 g++-12_12.2.0-14+rpi1 gcc-12_12.2.0-14+rpi1 libc6-dev_2.36-9+rpi1+deb12u1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 linux-libc-dev_6.1.38-1+rpi1
Package versions: adduser_3.137 apt_2.7.3 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.1 bash_5.2.15-2 binutils_2.40-2+rpi2 binutils-arm-linux-gnueabihf_2.40-2+rpi2 binutils-common_2.40-2+rpi2 blt_2.5.3+dfsg-4.1 bsdextrautils_2.39.2-1 bsdutils_1:2.39.2-1 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20230311 coreutils_9.1-1 cpp_4:12.2.0-3+rpi1 cpp-12_12.2.0-14+rpi1 cython3_0.29.36-1 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.6 debianutils_5.13 dh-autoreconf_20 dh-python_6.20230825 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dirmngr_2.2.40-1.1 dpkg_1.21.22+rpi1 dpkg-dev_1.21.22+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-4 fontconfig-config_2.14.2-6 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-lyx_2.3.7-1 g++_4:12.2.0-3+rpi1 g++-12_12.2.0-14+rpi1 gcc_4:12.2.0-3+rpi1 gcc-12_12.2.0-14+rpi1 gcc-12-base_12.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-12 gettext-base_0.21-12 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.8-5 groff-base_1.22.4-10 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-3 libacl1_2.3.1-3 libamd2_1:5.12.0+dfsg-2 libapt-pkg6.0_2.7.3 libarchive-zip-perl_1.68-1 libasan8_12.2.0-14+rpi1 libassuan0_2.5.6-1 libatomic1_12.2.0-14+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libbinutils_2.40-2+rpi2 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.39.2-1 libbrotli1_1.0.9-2+b3 libbsd0_0.11.7-4 libbtf1_1:5.12.0+dfsg-2 libbz2-1.0_1.0.8-5+b2 libc-bin_2.36-9+rpi1+deb12u1 libc-dev-bin_2.36-9+rpi1+deb12u1 libc6_2.36-9+rpi1+deb12u1 libc6-dev_2.36-9+rpi1+deb12u1 libcamd2_1:5.12.0+dfsg-2 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-4 libcap2-bin_1:2.66-4 libcc1-0_12.2.0-14+rpi1 libccolamd2_1:5.12.0+dfsg-2 libcholmod3_1:5.12.0+dfsg-2 libcolamd2_1:5.12.0+dfsg-2 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.40-2+rpi2 libctf0_2.40-2+rpi2 libcxsparse3_1:5.12.0+dfsg-2 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.270 libdebhelper-perl_13.11.6 libdeflate0_1.18-1 libdpkg-perl_1.21.22+rpi1 libelf1_0.188-2.1+rpi1 libexpat1_2.5.0-2 libexpat1-dev_2.5.0-2 libext2fs2_1.47.0-2 libfakeroot_1.32.1-1 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libfontconfig1_2.14.2-6 libfreetype6_2.13.2+dfsg-1 libfribidi0_1.0.13-3 libgcc-12-dev_12.2.0-14+rpi1 libgcc-s1_12.2.0-14+rpi1 libgcrypt20_1.10.2-2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_12.2.0-14+rpi1 libglib2.0-0_2.74.6-1 libglpk-dev_5.0-1 libglpk40_5.0-1 libgmp-dev_2:6.3.0+dfsg-2 libgmp10_2:6.3.0+dfsg-2 libgmpxx4ldbl_2:6.3.0+dfsg-2 libgnutls30_3.8.1-4 libgomp1_12.2.0-14+rpi1 libgpg-error0_1.47-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20.1-3 libharfbuzz0b_8.0.1-1 libhogweed6_3.9.1-2 libicu72_72.1-3 libidn2-0_2.3.4-1 libimagequant0_2.17.0-1 libisl23_0.26-3 libjansson4_2.14-2 libjbig0_2.1-6.1 libjpeg62-turbo_1:2.1.5-2 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-jquery-ui_1.13.2+dfsg-1 libjs-sphinxdoc_5.3.0-7 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libk5crypto3_1.20.1-3 libkeyutils1_1.6.3-2 libklu1_1:5.12.0+dfsg-2 libkrb5-3_1.20.1-3 libkrb5support0_1.20.1-3 libksba8_1.6.3-2 liblapack-dev_3.11.0-2 liblapack3_3.11.0-2 liblbfgsb0_3.0+dfsg.4-1 liblcms2-2_2.14-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1 libldl2_1:5.12.0+dfsg-2 liblerc4_4.0.0+ds-3 libltdl7_2.4.7-7 liblz4-1_1.9.4-1+rpi1+b1 liblzma5_5.4.4-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmetis5_5.1.0.dfsg-7 libmongoose2_1:5.12.0+dfsg-2 libmount1_2.39.2-1 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libncursesw6_6.4+20230625-2 libnettle8_3.9.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libopenjp2-7_2.5.0-2 libp11-kit0_0.25.0-4 libpam-cap_1:2.66-4 libpam-modules_1.5.2-7 libpam-modules-bin_1.5.2-7 libpam-runtime_1.5.2-7 libpam0g_1.5.2-7 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libpng16-16_1.6.40-1 libpython3-dev_3.11.4-5 libpython3-stdlib_3.11.4-5 libpython3.11_3.11.5-3 libpython3.11-dev_3.11.5-3 libpython3.11-minimal_3.11.5-3 libpython3.11-stdlib_3.11.5-3 libqhull-r8.0_2020.2-6 libraqm0_0.10.1-1 librbio2_1:5.12.0+dfsg-2 libreadline8_8.2-1.3 libsasl2-2_2.1.28+dfsg1-3 libsasl2-modules-db_2.1.28+dfsg1-3 libsbml5_5.19.7+dfsg-2 libseccomp2_2.5.4-1+rpi1+b1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.4-1+b2 libsepol1_3.1-1 libsepol2_3.5-1 libsliplu1_1:5.12.0+dfsg-2 libsmartcols1_2.39.2-1 libspqr2_1:5.12.0+dfsg-2 libsqlite3-0_3.43.1-1 libss2_1.47.0-2 libssl1.1_1.1.1o-1 libssl3_3.0.10-1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 libsub-override-perl_0.09-4 libsuitesparse-dev_1:5.12.0+dfsg-2 libsuitesparseconfig5_1:5.12.0+dfsg-2 libsystemd0_252.12-1~deb12u1+rpi1 libtasn1-6_4.19.0-3 libtcl8.6_8.6.13+dfsg-2 libtext-glob-perl_0.11-3 libtiff6_4.5.1+git230720-1 libtinfo6_6.4+20230625-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtk8.6_8.6.13-2 libtool_2.4.7-7 libubsan1_12.2.0-14+rpi1 libuchardet0_0.0.7-1 libudev1_252.12-1~deb12u1+rpi1 libumfpack5_1:5.12.0+dfsg-2 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.2-1 libwebp7_1.2.4-0.3 libwebpdemux2_1.2.4-0.3 libwebpmux3_1.2.4-0.3 libx11-6_2:1.8.6-1 libx11-data_2:1.8.6-1 libxau6_1:1.0.9-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1.3 libxrender1_1:0.9.10-1.1 libxslt1.1_1.1.35-1 libxss1_1:1.2.3-1 libxxhash0_0.8.1-1 libzstd1_1.5.5+dfsg2-1 linux-libc-dev_6.1.38-1+rpi1 login_1:4.13+dfsg1-1 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.11.2-3 mawk_1.3.4.20230808-1 media-types_10.1.0 mount_2.39.2-1 nano_7.2-1 ncurses-base_6.4+20230625-2 ncurses-bin_6.4+20230625-2 netbase_6.4 openssl_3.0.10-1 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-9 pinentry-curses_1.2.1-1 po-debconf_1.0.21+nmu1 python-matplotlib-data_3.6.3-1 python3_3.11.4-5 python3-anyio_3.7.0-1 python3-appdirs_1.4.4-4 python3-attr_23.1.0-2 python3-brotli_1.0.9-2+b3 python3-certifi_2022.9.24-1 python3-chardet_5.2.0+dfsg-1 python3-charset-normalizer_3.2.0-1 python3-click_8.1.6-1 python3-colorama_0.4.6-4 python3-contourpy_1.0.7-1 python3-cpuinfo_5.0.0-5 python3-cycler_0.11.0-1 python3-dateutil_2.8.2-3 python3-decorator_5.1.1-5 python3-depinfo_2.2.0-1 python3-dev_3.11.4-5 python3-diskcache_5.4.0-3 python3-distutils_3.11.5-1 python3-fonttools_4.38.0-1 python3-fs_2.4.16-2 python3-future_0.18.2-6 python3-h11_0.14.0-1 python3-httpcore_0.17.3-1 python3-httpx_0.23.3-1 python3-idna_3.3-2 python3-importlib-resources_6.0.1-1 python3-iniconfig_1.1.1-2 python3-jsonschema_4.10.3-2 python3-kiwisolver_1.4.4-1 python3-lib2to3_3.11.5-1 python3-lxml_4.9.3-1 python3-lz4_4.0.2+dfsg-1+b1 python3-markdown-it_3.0.0-2 python3-matplotlib_3.6.3-1 python3-mdurl_0.1.2-1 python3-minimal_3.11.4-5 python3-more-itertools_10.1.0-1 python3-mpmath_1.2.1-2 python3-numpy_1:1.24.2-1 python3-optlang_1.7.0-1 python3-packaging_23.1-1 python3-pandas_1.5.3+dfsg-6 python3-pandas-lib_1.5.3+dfsg-2+rpi1 python3-pil_10.0.0-1 python3-pil.imagetk_10.0.0-1 python3-pip_23.2+dfsg-1 python3-pipdeptree_2.2.0-3 python3-pkg-resources_68.1.2-1 python3-pluggy_1.3.0-1 python3-pydantic_1.10.4-1 python3-pygments_2.15.1+dfsg-1 python3-pyparsing_3.1.1-1 python3-pyrsistent_0.18.1-1+b1 python3-pytest_7.4.2-1 python3-pytest-benchmark_4.0.0-2 python3-pytest-mock_3.11.1-1 python3-requests_2.31.0+dfsg-1 python3-rfc3986_1.5.0-3 python3-rich_13.3.1-2 python3-ruamel.yaml_0.17.21-1 python3-ruamel.yaml.clib_0.2.7-1+b1 python3-sbml5_5.19.7+dfsg-2 python3-scipy_1.10.1-2+rpi1 python3-setuptools_68.1.2-1 python3-simplejson_3.19.1-1 python3-six_1.16.0-4 python3-sniffio_1.2.0-1 python3-swiglpk_5.0.8-1 python3-sympy_1.12-3 python3-tabulate_0.8.9-1 python3-tk_3.11.2-3 python3-typing-extensions_4.7.1-2 python3-tz_2023.3-4 python3-ufolib2_0.14.0+dfsg1-1 python3-unicodedata2_14.0.0+ds2-1+b1 python3-urllib3_1.26.16-1 python3-wheel_0.41.0-2 python3-zipp_1.0.0-6 python3.11_3.11.5-3 python3.11-dev_3.11.5-3 python3.11-minimal_3.11.5-3 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-cobra-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sgml-base_1.31 swig_4.1.0-0.3 swig4.0_4.1.0-0.3 sysvinit-utils_3.07-1 tar_1.34+dfsg-1.2 tk8.6-blt2.5_2.5.3+dfsg-4.1 tzdata_2023c-10 unicode-data_15.0.0-1 usrmerge_37 util-linux_2.39.2-1 util-linux-extra_2.39.2-1 x11-common_1:7.7+23 xz-utils_5.4.4-0.1 zlib1g_1:1.2.13.dfsg-3 zlib1g-dev_1:1.2.13.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: Signature made Wed Sep 20 14:24:06 2023 UTC
gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA
gpgv: issuer "nilesh@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./python-cobra_0.26.3-2.dsc: no acceptable signature found
dpkg-source: info: extracting python-cobra in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-cobra_0.26.3.orig.tar.gz
dpkg-source: info: unpacking python-cobra_0.26.3-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying mathjax.patch
dpkg-source: info: applying xfail_test_show_versions.patch
dpkg-source: info: applying ignore_tests.patch
dpkg-source: info: applying do-not-seek-for-name.patch
dpkg-source: info: applying 32-bit-test.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-4eecc36f-ca71-4609-b96a-83136038465d
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-cobra
dpkg-buildpackage: info: source version 0.26.3-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:291: python3.11 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
rm -f cobra/solvers/cglpk.c
rm -rf .pytest_cache
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:291: python3.11 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:291: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra
copying src/cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra
copying src/cobra/exceptions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/configuration.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/formula.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/gene.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/group.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/object.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/singleton.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/solution.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/species.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
copying src/cobra/data/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/fastcc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/helpers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
copying src/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
copying src/cobra/io/dict.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
copying src/cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
copying src/cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
copying src/cobra/io/yaml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
copying src/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation
copying src/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation
copying src/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation
copying src/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation
copying src/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation
copying src/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium
copying src/cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium
copying src/cobra/medium/annotations.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium
copying src/cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium
copying src/cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling
copying src/cobra/sampling/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling
copying src/cobra/sampling/achr.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling
copying src/cobra/sampling/core.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling
copying src/cobra/sampling/hr_sampler.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling
copying src/cobra/sampling/optgp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling
copying src/cobra/sampling/sampling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary
copying src/cobra/summary/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary
copying src/cobra/summary/metabolite_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary
copying src/cobra/summary/model_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary
copying src/cobra/summary/reaction_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary
copying src/cobra/summary/summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util
copying src/cobra/util/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util
copying src/cobra/util/array.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util
copying src/cobra/util/context.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util
copying src/cobra/util/process_pool.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util
copying src/cobra/util/solver.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util
copying src/cobra/util/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web
copying src/cobra/io/web/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web
copying src/cobra/io/web/abstract_model_repository.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web
copying src/cobra/io/web/bigg_models_repository.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web
copying src/cobra/io/web/biomodels_repository.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web
copying src/cobra/io/web/cobrapy_repository.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web
copying src/cobra/io/web/load.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web
copying src/cobra/data/iJO1366.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
copying src/cobra/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
copying src/cobra/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
copying src/cobra/data/mini.yml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
copying src/cobra/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
copying src/cobra/data/salmonella.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
copying src/cobra/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
copying src/cobra/io/schema_v1.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:291: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build; python3.11 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.11.5, pytest-7.4.2, pluggy-1.3.0
benchmark: 4.0.0 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000)
rootdir: /<<PKGBUILDDIR>>
configfile: tox.ini
plugins: anyio-3.7.0, benchmark-4.0.0, mock-3.11.1
collected 550 items
tests/test_core/test_configuration.py ...... [ 1%]
tests/test_core/test_core_reaction.py ..........ss...................... [ 7%]
...................x...... [ 12%]
tests/test_core/test_dictlist.py ...................... [ 16%]
tests/test_core/test_formula.py ..... [ 16%]
tests/test_core/test_gene.py . [ 17%]
tests/test_core/test_gpr.py .....................x..x................... [ 25%]
.......................... [ 29%]
tests/test_core/test_group.py .. [ 30%]
tests/test_core/test_metabolite.py ...ss.ss. [ 31%]
tests/test_core/test_model.py .......................................... [ 39%]
...........s..s.ss. [ 42%]
tests/test_core/test_solution.py .ss [ 43%]
tests/test_flux_analysis/test_deletion.py ....s..... [ 45%]
tests/test_flux_analysis/test_fastcc.py .... [ 46%]
tests/test_flux_analysis/test_geometric.py .. [ 46%]
tests/test_flux_analysis/test_moma.py . [ 46%]
tests/test_flux_analysis/test_parsimonious.py .. [ 46%]
tests/test_flux_analysis/test_reaction.py . [ 47%]
tests/test_flux_analysis/test_room.py .... [ 47%]
tests/test_flux_analysis/test_variability.py ....... [ 49%]
tests/test_flux_analysis/test_deletion.py sss [ 49%]
tests/test_flux_analysis/test_moma.py s [ 49%]
tests/test_flux_analysis/test_deletion.py ...... [ 50%]
tests/test_flux_analysis/test_gapfilling.py . [ 51%]
tests/test_flux_analysis/test_helpers.py ... [ 51%]
tests/test_flux_analysis/test_loopless.py ..... [ 52%]
tests/test_flux_analysis/test_phenotype_phase_plane.py ...... [ 53%]
tests/test_flux_analysis/test_variability.py ....... [ 54%]
tests/test_io/test_annotation.py .. [ 55%]
tests/test_io/test_annotation_format.py .. [ 55%]
tests/test_io/test_io_order.py ........................... [ 60%]
tests/test_io/test_json.py .... [ 61%]
tests/test_io/test_mat.py .......ssss.... [ 64%]
tests/test_io/test_notes.py . [ 64%]
tests/test_io/test_pickle.py .. [ 64%]
tests/test_io/test_sbml.py .ssss............xxxx.x.x..s............. [ 72%]
tests/test_io/test_yaml.py .x [ 72%]
tests/test_io/test_web/test_load.py ..ssss. [ 73%]
tests/test_manipulation/test_annotate.py . [ 73%]
tests/test_manipulation/test_delete.py ....... [ 75%]
tests/test_manipulation/test_modify.py ... [ 75%]
tests/test_manipulation/test_validate.py .. [ 76%]
tests/test_medium/test_boundary_types.py ......... [ 77%]
tests/test_medium/test_minimal_medium.py .......... [ 79%]
tests/test_sampling/test_achr.py ...... [ 80%]
tests/test_sampling/test_optgp.py ...... [ 81%]
tests/test_sampling/test_sampling.py .......... [ 83%]
tests/test_summary/test_metabolite_summary.py ................. [ 86%]
tests/test_summary/test_model_summary.py ............... [ 89%]
tests/test_summary/test_reaction_summary.py .................... [ 92%]
tests/test_util/test_array.py .. [ 93%]
tests/test_util/test_context.py ... [ 93%]
tests/test_util/test_process_pool.py ............... [ 96%]
tests/test_util/test_solver.py ..............s [ 99%]
tests/test_util/test_util.py ...x [100%]
=============================== warnings summary ===============================
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_and_gpr[a AND b-2-gpr_genes2-a and b]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_and_b_strs]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a AND b'.
warn(
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_or_gpr[a OR b-2-gpr_genes2-a or b]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_as_symbolic_boolean[a OR b-symbolic_gpr2]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_or_b_strs]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_from_symbolic[a OR b-symbolic_gpr5]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a OR b'.
warn(
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_complicated_gpr[(a OR b) AND c]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_as_symbolic_boolean[(a OR b) AND c-symbolic_gpr6]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_or_and_strs]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists8]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists9]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_from_symbolic[(a OR b) AND c-symbolic_gpr9]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule '(a OR b) AND c'.
warn(
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_that_needs_two_replacements
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule '(591001.3.peg.1891 AND 591001.3.peg.1892 AND 591001.3.peg.1893)'.
warn(
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_and_b_strs]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'b AND a'.
warn(
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_or_b_strs]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'b OR a'.
warn(
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_or_strs]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists7]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists8]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a OR b or c'.
warn(
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_and_strs]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists7]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists9]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a AND b and c'.
warn(
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_reaction_delete
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_reaction_delete
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/reaction.py:879: DeprecationWarning: delete is deprecated. Use reaction.remove_from_model instead
warn(
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_group_loss_of_elements
.pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_gapfilling.py::test_gapfilling
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/group.py:147: UserWarning: need to pass in a list
warn("need to pass in a list")
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_change_objective
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_change_objective
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_change_objective
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/reaction.py:761: DeprecationWarning: Please use reaction.flux instead.
warn("Please use reaction.flux instead.", DeprecationWarning)
.pybuild/cpython3_3.11_cobra/build/tests/test_io/test_json.py: 6 warnings
.pybuild/cpython3_3.11_cobra/build/tests/test_io/test_mat.py: 10 warnings
.pybuild/cpython3_3.11_cobra/build/tests/test_io/test_pickle.py: 2 warnings
.pybuild/cpython3_3.11_cobra/build/tests/test_io/test_sbml.py: 18 warnings
.pybuild/cpython3_3.11_cobra/build/tests/test_io/test_yaml.py: 2 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/solver.py:554: UserWarning: Solver status is 'infeasible'.
warn(f"Solver status is '{status}'.", UserWarning)
.pybuild/cpython3_3.11_cobra/build/tests/test_medium/test_minimal_medium.py: 29 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium/minimal_medium.py:112: FutureWarning: The default dtype for empty Series will be 'object' instead of 'float64' in a future version. Specify a dtype explicitly to silence this warning.
medium = pd.Series()
.pybuild/cpython3_3.11_cobra/build/tests/test_util/test_process_pool.py::test_with_context
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/process_pool.py:72: PytestMockWarning: Mocks returned by pytest-mock do not need to be used as context managers. The mocker fixture automatically undoes mocking at the end of a test. This warning can be ignored if it was triggered by mocking a context manager. https://pytest-mock.readthedocs.io/en/latest/remarks.html#usage-as-context-manager
self._pool.__enter__()
.pybuild/cpython3_3.11_cobra/build/tests/test_util/test_util.py::test_show_versions
/usr/lib/python3/dist-packages/depinfo/application/compatibility.py:26: DeprecationWarning: The function 'print_dependencies' is deprecated since version 2.0.0. Please use either the command line interface with command 'depinfo' or import 'depinfo.application.DisplayApplication' in your Python project.
warn(
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
------------------------------------------------------------------------------------------------------------------------------ benchmark: 31 tests ------------------------------------------------------------------------------------------------------------------------------
Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
test_subtract_metabolite_benchmark[glpk] 77.3350 (1.0) 128.6710 (1.0) 80.9402 (1.0) 5.3756 (1.0) 79.6690 (1.0) 1.6663 (1.0) 19;32 12,354.7956 (1.0) 425 1
test_subtract_metabolite_benchmark[gurobi] 78.0020 (1.01) 129.3370 (1.01) 81.7070 (1.01) 5.5470 (1.03) 80.6680 (1.01) 2.0000 (1.20) 18;34 12,238.8556 (0.99) 411 1
test_subtract_metabolite_benchmark[cplex] 79.0020 (1.02) 12,195.3300 (94.78) 113.0847 (1.40) 602.6458 (112.11) 81.6690 (1.03) 1.6670 (1.00) 1;34 8,842.9270 (0.72) 404 1
test_change_objective_benchmark[optlang-glpk] 3,522.0950 (45.54) 10,177.2760 (79.10) 3,653.8631 (45.14) 320.5238 (59.63) 3,635.4320 (45.63) 52.5848 (31.56) 1;13 273.6829 (0.02) 427 1
test_achr_sample_benchmark 3,614.7640 (46.74) 4,032.4430 (31.34) 3,739.8933 (46.21) 64.0688 (11.92) 3,736.1010 (46.90) 75.8350 (45.51) 23;3 267.3873 (0.02) 133 1
test_optgp_sample_benchmark 5,371.4790 (69.46) 5,866.8260 (45.60) 5,458.4206 (67.44) 76.8693 (14.30) 5,439.1470 (68.27) 53.0020 (31.81) 23;14 183.2032 (0.01) 154 1
test_loopless_benchmark_after 19,445.1930 (251.44) 20,027.8750 (155.65) 19,627.5567 (242.49) 151.7444 (28.23) 19,593.0295 (245.93) 257.0070 (154.24) 8;0 50.9488 (0.00) 26 1
test_loopless_benchmark_before 83,837.6020 (>1000.0) 85,059.6351 (661.06) 84,486.8864 (>1000.0) 444.9275 (82.77) 84,521.9540 (>1000.0) 518.0140 (310.89) 2;0 11.8362 (0.00) 5 1
test_minimal_medium_mip_benchmark 95,541.9220 (>1000.0) 96,259.9410 (748.11) 95,898.1699 (>1000.0) 248.7222 (46.27) 95,960.2670 (>1000.0) 352.5092 (211.56) 3;0 10.4277 (0.00) 7 1
test_minimal_medium_linear_benchmark 97,819.3170 (>1000.0) 99,466.0290 (773.03) 98,397.2853 (>1000.0) 623.2421 (115.94) 98,150.9930 (>1000.0) 934.6920 (560.95) 1;0 10.1629 (0.00) 7 1
test_copy_benchmark[optlang-glpk] 256,290.9370 (>1000.0) 271,399.0130 (>1000.0) 262,391.1020 (>1000.0) 7,258.0632 (>1000.0) 258,766.0040 (>1000.0) 13,202.2735 (>1000.0) 1;0 3.8111 (0.00) 5 1
test_single_reaction_deletion_benchmark[glpk] 323,266.0810 (>1000.0) 325,403.8060 (>1000.0) 324,152.1722 (>1000.0) 777.8825 (144.71) 324,073.7710 (>1000.0) 689.1855 (413.61) 2;0 3.0850 (0.00) 5 1
test_deepcopy_benchmark 391,697.2680 (>1000.0) 411,781.1450 (>1000.0) 403,877.6646 (>1000.0) 8,086.6413 (>1000.0) 407,602.0319 (>1000.0) 11,448.6433 (>1000.0) 1;0 2.4760 (0.00) 5 1
test_single_gene_deletion_fba_benchmark[glpk] 431,947.6900 (>1000.0) 503,596.2960 (>1000.0) 461,568.4918 (>1000.0) 30,693.6035 (>1000.0) 455,988.6740 (>1000.0) 52,610.8407 (>1000.0) 1;0 2.1665 (0.00) 5 1
test_gpr_equality_benchmark 455,066.3170 (>1000.0) 467,699.3260 (>1000.0) 458,501.0770 (>1000.0) 5,420.6206 (>1000.0) 455,508.6630 (>1000.0) 6,220.0860 (>1000.0) 1;0 2.1810 (0.00) 5 1
test_fastcc_benchmark[glpk] 928,552.7960 (>1000.0) 1,845,255.2710 (>1000.0) 1,118,840.6122 (>1000.0) 406,206.7501 (>1000.0) 933,380.9270 (>1000.0) 245,911.3220 (>1000.0) 1;1 0.8938 (0.00) 5 1
test_add_metabolite_benchmark[gurobi] 1,229,316.6110 (>1000.0) 1,236,904.4830 (>1000.0) 1,232,013.8172 (>1000.0) 3,118.8851 (580.19) 1,231,226.9960 (>1000.0) 4,518.2885 (>1000.0) 1;0 0.8117 (0.00) 5 1
test_add_metabolite_benchmark[glpk] 1,235,449.1110 (>1000.0) 1,244,877.3660 (>1000.0) 1,239,377.9504 (>1000.0) 3,889.3292 (723.51) 1,238,581.5290 (>1000.0) 6,310.6708 (>1000.0) 2;0 0.8069 (0.00) 5 1
test_add_metabolite_benchmark[cplex] 1,245,519.7170 (>1000.0) 1,250,027.8380 (>1000.0) 1,247,481.5028 (>1000.0) 1,673.9955 (311.40) 1,247,127.7600 (>1000.0) 2,030.0549 (>1000.0) 2;0 0.8016 (0.00) 5 1
test_optgp_init_benchmark 1,394,236.1100 (>1000.0) 1,420,359.8180 (>1000.0) 1,408,362.6264 (>1000.0) 9,335.8912 (>1000.0) 1,409,821.5330 (>1000.0) 8,302.9753 (>1000.0) 2;0 0.7100 (0.00) 5 1
test_achr_init_benchmark 1,401,184.6330 (>1000.0) 1,435,760.9040 (>1000.0) 1,415,897.0320 (>1000.0) 13,445.3270 (>1000.0) 1,411,116.9020 (>1000.0) 18,659.3389 (>1000.0) 2;0 0.7063 (0.00) 5 1
test_single_gene_deletion_linear_moma_benchmark[glpk] 2,907,392.3530 (>1000.0) 5,891,156.7710 (>1000.0) 3,509,612.7176 (>1000.0) 1,331,329.5924 (>1000.0) 2,916,927.9441 (>1000.0) 747,146.1370 (>1000.0) 1;1 0.2849 (0.00) 5 1
test_gpr_symbolism_benchmark 3,449,804.3780 (>1000.0) 3,481,123.8920 (>1000.0) 3,464,481.0416 (>1000.0) 11,513.0367 (>1000.0) 3,464,360.7720 (>1000.0) 14,202.0510 (>1000.0) 2;0 0.2886 (0.00) 5 1
test_flux_variability_loopless_benchmark[glpk] 4,003,195.7160 (>1000.0) 4,298,120.0320 (>1000.0) 4,091,256.4326 (>1000.0) 118,364.4680 (>1000.0) 4,058,662.2170 (>1000.0) 102,092.5960 (>1000.0) 1;1 0.2444 (0.00) 5 1
test_double_gene_deletion_benchmark 4,115,222.0590 (>1000.0) 4,450,179.1260 (>1000.0) 4,269,907.9120 (>1000.0) 127,471.0257 (>1000.0) 4,264,802.7730 (>1000.0) 180,569.1388 (>1000.0) 2;0 0.2342 (0.00) 5 1
test_single_gene_deletion_linear_room_benchmark[glpk] 4,236,898.9980 (>1000.0) 4,267,659.1630 (>1000.0) 4,253,726.7864 (>1000.0) 11,392.6037 (>1000.0) 4,254,189.7980 (>1000.0) 14,288.9695 (>1000.0) 2;0 0.2351 (0.00) 5 1
test_pfba_benchmark[glpk] 4,535,572.7350 (>1000.0) 4,544,177.6340 (>1000.0) 4,539,716.6466 (>1000.0) 4,140.6284 (770.26) 4,537,734.7930 (>1000.0) 7,579.6205 (>1000.0) 3;0 0.2203 (0.00) 5 1
test_copy_benchmark_large_model[optlang-glpk] 5,398,585.1130 (>1000.0) 7,568,811.5210 (>1000.0) 6,247,154.2152 (>1000.0) 1,039,248.8359 (>1000.0) 5,703,761.7080 (>1000.0) 1,865,433.4040 (>1000.0) 1;0 0.1601 (0.00) 5 1
test_geometric_fba_benchmark[glpk] 6,199,889.1170 (>1000.0) 6,254,065.5820 (>1000.0) 6,215,717.4106 (>1000.0) 23,331.1701 (>1000.0) 6,201,660.4960 (>1000.0) 29,377.7923 (>1000.0) 1;0 0.1609 (0.00) 5 1
test_double_reaction_deletion_benchmark 26,606,108.7680 (>1000.0) 27,029,734.8840 (>1000.0) 26,732,975.5352 (>1000.0) 169,016.2758 (>1000.0) 26,683,455.1630 (>1000.0) 127,323.3707 (>1000.0) 1;1 0.0374 (0.00) 5 1
test_flux_variability_benchmark[glpk] 168,307,358.7810 (>1000.0) 169,752,512.0480 (>1000.0) 168,650,039.2136 (>1000.0) 617,943.7314 (>1000.0) 168,390,203.6870 (>1000.0) 409,295.9548 (>1000.0) 1;1 0.0059 (0.00) 5 1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Legend:
Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile.
OPS: Operations Per Second, computed as 1 / Mean
==== 508 passed, 31 skipped, 11 xfailed, 119 warnings in 2490.73s (0:41:30) ====
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:291: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-cobra
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_py
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/exceptions.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/configuration.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/formula.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/group.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/object.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/singleton.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/solution.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/species.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/configuration.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/singleton.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/dictlist.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/object.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/gene.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/species.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/metabolite.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/formula.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/model.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/group.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/reaction.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/solution.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data/iJO1366.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.yml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data/salmonella.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/fastcc.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/helpers.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/reaction.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/dict.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/json.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/mat.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/yaml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/abstract_model_repository.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/bigg_models_repository.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/biomodels_repository.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/cobrapy_repository.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/load.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/load.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/cobrapy_repository.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/schema_v1.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/dict.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/json.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/mat.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/sbml.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/yaml.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/delete.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/modify.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/validate.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium/annotations.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/annotations.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/achr.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/core.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/hr_sampler.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/optgp.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/sampling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/achr.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/core.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/optgp.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/sampling.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary/metabolite_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary/model_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary/reaction_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary/summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/summary.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/model_summary.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/array.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/context.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/process_pool.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/util.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/array.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/context.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/solver.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/util.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/process_pool.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/__pycache__/exceptions.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/.benchmarks
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/exceptions.py to exceptions.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/configuration.py to configuration.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/dictlist.py to dictlist.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/formula.py to formula.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/gene.py to gene.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/group.py to group.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/metabolite.py to metabolite.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/model.py to model.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/object.py to object.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/reaction.py to reaction.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/singleton.py to singleton.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/solution.py to solution.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/species.py to species.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/room.py to room.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/dict.py to dict.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/json.py to json.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/mat.py to mat.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/yaml.py to yaml.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/sbml.py to sbml.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/cobrapy_repository.py to cobrapy_repository.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/load.py to load.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/delete.py to delete.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/modify.py to modify.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/validate.py to validate.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/annotations.py to annotations.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/achr.py to achr.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/core.py to core.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/optgp.py to optgp.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/sampling.py to sampling.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/summary.py to summary.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/array.py to array.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/context.py to context.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/process_pool.py to process_pool.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/solver.py to solver.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/util.py to util.cpython-311.pyc
running install_egg_info
running egg_info
creating src/cobra.egg-info
writing src/cobra.egg-info/PKG-INFO
writing dependency_links to src/cobra.egg-info/dependency_links.txt
writing requirements to src/cobra.egg-info/requires.txt
writing top-level names to src/cobra.egg-info/top_level.txt
writing manifest file 'src/cobra.egg-info/SOURCES.txt'
reading manifest file 'src/cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'src/cobra.egg-info/SOURCES.txt'
Copying src/cobra.egg-info to /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra-0.26.3.egg-info
Skipping SOURCES.txt
running install_scripts
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -X update_pickles.py --package=python-cobra-data
dh_install: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions).
dh_install --remaining-packages
find debian -name __pycache__ | xargs rm -rf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
I: dh_python3 pydist:302: Cannot find package that provides python_libsbml. Please add package that provides it to Build-Depends or add "python_libsbml python3-libsbml" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info.
dh_installsystemduser -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.26.3-2_armhf.deb'.
dpkg-genbuildinfo --build=any -O../python-cobra_0.26.3-2_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../python-cobra_0.26.3-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-09-23T10:28:30Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-cobra_0.26.3-2_armhf.changes:
------------------------------------
Format: 1.8
Date: Wed, 20 Sep 2023 19:50:59 +0530
Source: python-cobra
Binary: python3-cobra
Architecture: armhf
Version: 0.26.3-2
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
python3-cobra - constraint-based modeling of biological networks with Python 3
Changes:
python-cobra (0.26.3-2) unstable; urgency=medium
.
* Team Upload.
* Add patch to skip a test on 32-bit
Checksums-Sha1:
ca724e5f1bbdc1fb8823c47f4e8da422978bb58c 10327 python-cobra_0.26.3-2_armhf.buildinfo
9d5622c6dc757bbd05d2ef32ed4193986efd1cdc 1118668 python3-cobra_0.26.3-2_armhf.deb
Checksums-Sha256:
5d0ae610e1ba71c9d089e101453469e6a8d638f5fddf3f8085d4f8c9c57e9d10 10327 python-cobra_0.26.3-2_armhf.buildinfo
e04a47c044551358994499c1d137f7fcb85c32364ac6bedd8ca9088a095e1368 1118668 python3-cobra_0.26.3-2_armhf.deb
Files:
2919d8ec872d249745e4bbc01094dd43 10327 python optional python-cobra_0.26.3-2_armhf.buildinfo
d5a4cb3c986c738a13adc1ea39307a9e 1118668 python optional python3-cobra_0.26.3-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-cobra_0.26.3-2_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 1118668 bytes: control archive=3536 bytes.
1233 bytes, 19 lines control
7584 bytes, 84 lines md5sums
273 bytes, 12 lines * postinst #!/bin/sh
386 bytes, 12 lines * prerm #!/bin/sh
Package: python3-cobra
Source: python-cobra
Version: 0.26.3-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1873
Depends: python3-appdirs (>= 1.4), python3-appdirs (<< 2), python3-depinfo, python3-diskcache, python3-future, python3-httpx, python3-importlib-resources, python3-numpy, python3-optlang (>= 1.7.0-1~), python3-pandas, python3-pydantic, python3-rich, python3-ruamel.yaml, python3-swiglpk (>= 5.0.8-1~), python3:any, python-cobra-data (= 0.26.3-2), python3-simplejson, python3-tabulate, python3-sbml5
Suggests: python3-matplotlib, qsopt-ex
Section: python
Priority: optional
Homepage: https://opencobra.github.io/cobrapy/
Description: constraint-based modeling of biological networks with Python 3
COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
used for genome-scale modeling of metabolic networks in both prokaryotes
and eukaryotes. COBRApy is a constraint-based modeling package that is
designed to accommodate the biological complexity of the next generation
of COBRA models and provides access to commonly used COBRA methods, such
as flux balance analysis, flux variability analysis, and gene deletion
analyses.
drwxr-xr-x root/root 0 2023-09-20 14:20 ./
drwxr-xr-x root/root 0 2023-09-20 14:20 ./usr/
drwxr-xr-x root/root 0 2023-09-20 14:20 ./usr/lib/
drwxr-xr-x root/root 0 2023-09-20 14:20 ./usr/lib/python3/
drwxr-xr-x root/root 0 2023-09-20 14:20 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra-0.26.3.egg-info/
-rw-r--r-- root/root 8718 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra-0.26.3.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra-0.26.3.egg-info/dependency_links.txt
-rw-r--r-- root/root 79 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra-0.26.3.egg-info/requires.txt
-rw-r--r-- root/root 6 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra-0.26.3.egg-info/top_level.txt
-rw-r--r-- root/root 1 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra-0.26.3.egg-info/zip-safe
drwxr-xr-x root/root 0 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra/
-rw-r--r-- root/root 393 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/__init__.py
drwxr-xr-x root/root 0 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra/core/
-rw-r--r-- root/root 417 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/core/__init__.py
-rw-r--r-- root/root 8797 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/core/configuration.py
-rw-r--r-- root/root 17550 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/core/dictlist.py
-rw-r--r-- root/root 5746 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/core/formula.py
-rw-r--r-- root/root 25315 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/core/gene.py
-rw-r--r-- root/root 4804 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/core/group.py
-rw-r--r-- root/root 11486 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/core/metabolite.py
-rw-r--r-- root/root 55522 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/core/model.py
-rw-r--r-- root/root 3342 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/core/object.py
-rw-r--r-- root/root 56235 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/core/reaction.py
-rw-r--r-- root/root 398 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/core/singleton.py
-rw-r--r-- root/root 6331 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/core/solution.py
-rw-r--r-- root/root 2795 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/core/species.py
drwxr-xr-x root/root 0 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra/data/
-rw-r--r-- root/root 0 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/data/__init__.py
-rw-r--r-- root/root 395484 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra/data/iJO1366.xml.gz
-rw-r--r-- root/root 41621 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/data/mini.json
-rw-r--r-- root/root 54968 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/data/mini.mat
-rw-r--r-- root/root 25855 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/data/mini.yml
-rw-r--r-- root/root 102660 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/data/mini_cobra.xml
-rw-r--r-- root/root 574163 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra/data/salmonella.xml.gz
-rw-r--r-- root/root 18224 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra/data/textbook.xml.gz
-rw-r--r-- root/root 1058 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/exceptions.py
drwxr-xr-x root/root 0 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra/flux_analysis/
-rw-r--r-- root/root 635 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/flux_analysis/__init__.py
-rw-r--r-- root/root 20296 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/flux_analysis/deletion.py
-rw-r--r-- root/root 5878 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/flux_analysis/fastcc.py
-rw-r--r-- root/root 15691 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/flux_analysis/gapfilling.py
-rw-r--r-- root/root 4762 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/flux_analysis/geometric.py
-rw-r--r-- root/root 1013 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/flux_analysis/helpers.py
-rw-r--r-- root/root 10155 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/flux_analysis/loopless.py
-rw-r--r-- root/root 5924 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/flux_analysis/moma.py
-rw-r--r-- root/root 4894 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/flux_analysis/parsimonious.py
-rw-r--r-- root/root 13111 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py
-rw-r--r-- root/root 9935 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/flux_analysis/reaction.py
-rw-r--r-- root/root 5351 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/flux_analysis/room.py
-rw-r--r-- root/root 14990 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/flux_analysis/variability.py
drwxr-xr-x root/root 0 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra/io/
-rw-r--r-- root/root 509 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/io/__init__.py
-rw-r--r-- root/root 11388 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/io/dict.py
-rw-r--r-- root/root 3815 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/io/json.py
-rw-r--r-- root/root 35761 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/io/mat.py
-rw-r--r-- root/root 71818 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra/io/sbml.py
-rw-r--r-- root/root 3194 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/io/schema_v1.json
drwxr-xr-x root/root 0 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra/io/web/
-rw-r--r-- root/root 250 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/io/web/__init__.py
-rw-r--r-- root/root 1968 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/io/web/abstract_model_repository.py
-rw-r--r-- root/root 1996 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/io/web/bigg_models_repository.py
-rw-r--r-- root/root 2764 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/io/web/biomodels_repository.py
-rw-r--r-- root/root 1363 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/io/web/cobrapy_repository.py
-rw-r--r-- root/root 5658 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/io/web/load.py
-rw-r--r-- root/root 4243 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/io/yaml.py
drwxr-xr-x root/root 0 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra/manipulation/
-rw-r--r-- root/root 304 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/manipulation/__init__.py
-rw-r--r-- root/root 1115 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/manipulation/annotate.py
-rw-r--r-- root/root 8637 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/manipulation/delete.py
-rw-r--r-- root/root 5287 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/manipulation/modify.py
-rw-r--r-- root/root 1714 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/manipulation/validate.py
drwxr-xr-x root/root 0 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra/medium/
-rw-r--r-- root/root 168 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/medium/__init__.py
-rw-r--r-- root/root 2212 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/medium/annotations.py
-rw-r--r-- root/root 6190 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/medium/boundary_types.py
-rw-r--r-- root/root 9707 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/medium/minimal_medium.py
drwxr-xr-x root/root 0 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra/sampling/
-rw-r--r-- root/root 165 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/sampling/__init__.py
-rw-r--r-- root/root 5962 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/sampling/achr.py
-rw-r--r-- root/root 3631 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/sampling/core.py
-rw-r--r-- root/root 19797 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/sampling/hr_sampler.py
-rw-r--r-- root/root 8884 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/sampling/optgp.py
-rw-r--r-- root/root 3350 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/sampling/sampling.py
drwxr-xr-x root/root 0 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra/summary/
-rw-r--r-- root/root 165 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/summary/__init__.py
-rw-r--r-- root/root 14062 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/summary/metabolite_summary.py
-rw-r--r-- root/root 16020 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/summary/model_summary.py
-rw-r--r-- root/root 7896 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/summary/reaction_summary.py
-rw-r--r-- root/root 4769 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/summary/summary.py
drwxr-xr-x root/root 0 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra/test/
lrwxrwxrwx root/root 0 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra/test/data -> ../../../../../share/python-cobra/data
drwxr-xr-x root/root 0 2023-09-20 14:20 ./usr/lib/python3/dist-packages/cobra/util/
-rw-r--r-- root/root 164 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/util/__init__.py
-rw-r--r-- root/root 8493 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/util/array.py
-rw-r--r-- root/root 2836 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/util/context.py
-rw-r--r-- root/root 3579 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/util/process_pool.py
-rw-r--r-- root/root 21838 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/util/solver.py
-rw-r--r-- root/root 1327 2023-04-12 20:54 ./usr/lib/python3/dist-packages/cobra/util/util.py
drwxr-xr-x root/root 0 2023-09-20 14:20 ./usr/share/
drwxr-xr-x root/root 0 2023-09-20 14:20 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-09-20 14:20 ./usr/share/doc/python3-cobra/
-rw-r--r-- root/root 2188 2023-04-12 20:54 ./usr/share/doc/python3-cobra/README.rst.gz
-rw-r--r-- root/root 1807 2023-09-20 14:20 ./usr/share/doc/python3-cobra/changelog.Debian.gz
-rw-r--r-- root/root 2078 2023-09-20 13:26 ./usr/share/doc/python3-cobra/copyright
drwxr-xr-x root/root 0 2023-09-20 14:20 ./usr/share/lintian/
drwxr-xr-x root/root 0 2023-09-20 14:20 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 146 2023-09-20 13:26 ./usr/share/lintian/overrides/python3-cobra
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 19472
Build-Time: 2580
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 1934
Job: python-cobra_0.26.3-2
Machine Architecture: armhf
Package: python-cobra
Package-Time: 4571
Source-Version: 0.26.3-2
Space: 19472
Status: successful
Version: 0.26.3-2
--------------------------------------------------------------------------------
Finished at 2023-09-23T10:28:30Z
Build needed 01:16:11, 19472k disc space