python-cobra →
0.22.1-1 →
armhf → 2021-08-25 07:13:41
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testbuildd
+==============================================================================+
| python-cobra 0.22.1-1 (armhf) Wed, 25 Aug 2021 06:50:39 +0000 |
+==============================================================================+
Package: python-cobra
Version: 0.22.1-1
Source Version: 0.22.1-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-43138ece-5cf8-42fc-a9a2-4777fa392c2f' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.3 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.3 MB]
Fetched 25.6 MB in 29s (888 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-cobra' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-cobra.git
Please use:
git clone https://salsa.debian.org/med-team/python-cobra.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2617 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main python-cobra 0.22.1-1 (dsc) [3075 B]
Get:2 http://172.17.0.1/private bookworm-staging/main python-cobra 0.22.1-1 (tar) [2606 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main python-cobra 0.22.1-1 (diff) [7588 B]
Fetched 2617 kB in 1s (2304 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-cobra-0HmE7s/python-cobra-0.22.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-cobra-0HmE7s' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-uRx7ep/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-uRx7ep/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-uRx7ep/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-uRx7ep/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-uRx7ep/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-uRx7ep/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-uRx7ep/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-uRx7ep/apt_archive ./ Packages [435 B]
Fetched 2111 B in 1s (2942 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 19 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-uRx7ep/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (22.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12488 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any-amd64 any-i386 arm64 armel armhf mips mips64el mipsel ppc64el alpha hppa m68k powerpc powerpcspe ppc64 sh4 sparc64 all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas (>= 0.17.0), python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 4.65.1), python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-jsonschema (>> 2.5.0), libsbml5, python3-matplotlib, python3-appdirs, python3-diskcache, python3-httpx, python3-pydantic, python3-rich
Filtered Build-Depends: debhelper-compat (= 13), dh-python, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas (>= 0.17.0), python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 4.65.1), python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-jsonschema (>> 2.5.0), libsbml5, python3-matplotlib, python3-appdirs, python3-diskcache, python3-httpx, python3-pydantic, python3-rich
dpkg-deb: building package 'sbuild-build-depends-python-cobra-dummy' in '/<<BUILDDIR>>/resolver-uRx7ep/apt_archive/sbuild-build-depends-python-cobra-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-cobra-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-uRx7ep/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-uRx7ep/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-uRx7ep/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-uRx7ep/apt_archive ./ Sources [715 B]
Get:5 copy:/<<BUILDDIR>>/resolver-uRx7ep/apt_archive ./ Packages [782 B]
Fetched 2830 B in 1s (3921 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install python-cobra build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
fonts-lyx gettext gettext-base groff-base intltool-debian libamd2
libarchive-zip-perl libblas-dev libblas3 libbrotli1 libbsd0 libbtf1 libcamd2
libccolamd2 libcholmod3 libcolamd2 libcxsparse3 libdebhelper-perl
libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libfreetype6 libgfortran5 libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl
libgraphblas3 libicu67 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery
libjs-jquery-ui libjs-sphinxdoc libjs-underscore libklu1 liblapack-dev
liblapack3 liblcms2-2 libldl2 libltdl7 libmagic-mgc libmagic1 libmd0
libmetis5 libmongoose2 libmpdec3 libpipeline1 libpng16-16 libpython3-dev
libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
libpython3.9-stdlib librbio2 libsbml5 libsigsegv2 libsliplu1 libspqr2
libsub-override-perl libsuitesparse-dev libsuitesparseconfig5 libtiff5
libtool libuchardet0 libumfpack5 libwebp6 libwebpdemux2 libwebpmux3 libxau6
libxcb1 libxdmcp6 libxml2 m4 mailcap man-db media-types mime-support openssl
po-debconf python-matplotlib-data python-pip-whl python3 python3-appdirs
python3-attr python3-certifi python3-chardet python3-colorama
python3-commonmark python3-cpuinfo python3-cycler python3-dateutil
python3-depinfo python3-dev python3-diskcache python3-distutils
python3-future python3-h11 python3-httpcore python3-httpx python3-idna
python3-importlib-metadata python3-iniconfig python3-jsonschema
python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal
python3-more-itertools python3-mpmath python3-numpy python3-optlang
python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pip
python3-pipdeptree python3-pkg-resources python3-pluggy python3-py
python3-pydantic python3-pygments python3-pyparsing python3-pyrsistent
python3-pytest python3-pytest-benchmark python3-requests python3-rfc3986
python3-rich python3-ruamel.yaml python3-ruamel.yaml.clib python3-sbml5
python3-setuptools python3-simplejson python3-six python3-sniffio
python3-swiglpk python3-sympy python3-tabulate python3-toml
python3-typing-extensions python3-tz python3-urllib3 python3-wheel
python3-zipp python3.9 python3.9-dev python3.9-minimal sensible-utils swig
swig4.0 ttf-bitstream-vera zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cython-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff liblapack-doc libiodbc2-dev
default-libmysqlclient-dev gmp-doc libgmp10-doc libmpfr-dev
libjs-jquery-ui-docs liblcms2-utils libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc
python-cycler-doc python-future-doc python-jsonschema-doc dvipng ffmpeg
ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common
python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo
python3-gobject python3-nose python3-pyqt5 python3-scipy python3-sip
python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft
python-mpmath-doc python3-gmpy2 gfortran python-numpy-doc python3-numpy-dbg
python-pandas-doc python3-statsmodels python-pil-doc python3-pil-dbg
subversion python-pygments-doc python-pyparsing-doc python3-cryptography
python3-openssl python3-socks python-requests-doc python-setuptools-doc
texlive-fonts-extra python-sympy-doc python3.9-venv python3.9-doc
binfmt-support swig-doc swig-examples swig4.0-examples swig4.0-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl javascript-common libltdl-dev
libmail-sendmail-perl python3-tk python3-scipy python3-bottleneck
python3-numexpr python3-odf python3-openpyxl python3-xlwt python3-bs4
python3-html5lib python3-lxml python3-tables python3-jinja2 python3-olefile
python3-graphviz python3-elasticsearch python3-freezegun python3-pygal
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
fonts-lyx gettext gettext-base groff-base intltool-debian libamd2
libarchive-zip-perl libblas-dev libblas3 libbrotli1 libbsd0 libbtf1 libcamd2
libccolamd2 libcholmod3 libcolamd2 libcxsparse3 libdebhelper-perl
libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libfreetype6 libgfortran5 libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl
libgraphblas3 libicu67 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery
libjs-jquery-ui libjs-sphinxdoc libjs-underscore libklu1 liblapack-dev
liblapack3 liblcms2-2 libldl2 libltdl7 libmagic-mgc libmagic1 libmd0
libmetis5 libmongoose2 libmpdec3 libpipeline1 libpng16-16 libpython3-dev
libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
libpython3.9-stdlib librbio2 libsbml5 libsigsegv2 libsliplu1 libspqr2
libsub-override-perl libsuitesparse-dev libsuitesparseconfig5 libtiff5
libtool libuchardet0 libumfpack5 libwebp6 libwebpdemux2 libwebpmux3 libxau6
libxcb1 libxdmcp6 libxml2 m4 mailcap man-db media-types mime-support openssl
po-debconf python-matplotlib-data python-pip-whl python3 python3-appdirs
python3-attr python3-certifi python3-chardet python3-colorama
python3-commonmark python3-cpuinfo python3-cycler python3-dateutil
python3-depinfo python3-dev python3-diskcache python3-distutils
python3-future python3-h11 python3-httpcore python3-httpx python3-idna
python3-importlib-metadata python3-iniconfig python3-jsonschema
python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal
python3-more-itertools python3-mpmath python3-numpy python3-optlang
python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pip
python3-pipdeptree python3-pkg-resources python3-pluggy python3-py
python3-pydantic python3-pygments python3-pyparsing python3-pyrsistent
python3-pytest python3-pytest-benchmark python3-requests python3-rfc3986
python3-rich python3-ruamel.yaml python3-ruamel.yaml.clib python3-sbml5
python3-setuptools python3-simplejson python3-six python3-sniffio
python3-swiglpk python3-sympy python3-tabulate python3-toml
python3-typing-extensions python3-tz python3-urllib3 python3-wheel
python3-zipp python3.9 python3.9-dev python3.9-minimal
sbuild-build-depends-python-cobra-dummy sensible-utils swig swig4.0
ttf-bitstream-vera zlib1g-dev
0 upgraded, 172 newly installed, 0 to remove and 19 not upgraded.
Need to get 85.8 MB of archives.
After this operation, 488 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-uRx7ep/apt_archive ./ sbuild-build-depends-python-cobra-dummy 0.invalid.0 [1060 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.36.1-8 [137 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-6 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.2-1+rpi1 [791 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.2.10-2 [73.4 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.2-1+rpi1 [1625 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf media-types all 4.0.0 [30.3 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf mailcap all 3.69 [31.7 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-1+rpi1 [73.4 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.2-1+rpi1 [1616 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf python3.9 armhf 3.9.2-1+rpi1 [466 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf python3 armhf 3.9.2-3 [37.9 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.14 [14.8 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.69-14 [313 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.3-2 [814 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf openssl armhf 1.1.1k-1 [814 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf ca-certificates all 20210119 [158 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf cython3 armhf 0.29.21-3+b1 [1234 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.4.1 [191 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [580 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.4.1 [1039 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.2-1 [77.8 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf python3-distutils all 3.9.2-1 [143 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf dh-python all 4.20201102+nmu1 [99.4 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf fonts-lyx all 2.3.6-1 [205 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf libsuitesparseconfig5 armhf 1:5.8.1+dfsg-2 [22.6 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf libamd2 armhf 1:5.8.1+dfsg-2 [29.3 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libblas-dev armhf 3.9.0-3 [113 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf libmd0 armhf 1.0.3-3 [27.2 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf libbtf1 armhf 1:5.8.1+dfsg-2 [23.2 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf libcamd2 armhf 1:5.8.1+dfsg-2 [29.8 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf libccolamd2 armhf 1:5.8.1+dfsg-2 [30.5 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf libcolamd2 armhf 1:5.8.1+dfsg-2 [27.4 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf libgfortran5 armhf 10.2.1-6+rpi1 [232 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf libmetis5 armhf 5.1.0.dfsg-7 [133 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf libcholmod3 armhf 1:5.8.1+dfsg-2 [212 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf libcxsparse3 armhf 1:5.8.1+dfsg-2 [51.6 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf libdeflate0 armhf 1.7-2 [44.1 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.2.10-2 [121 kB]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [353 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf libltdl7 armhf 2.4.6-15 [388 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf libglpk40 armhf 5.0-1 [327 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libgmpxx4ldbl armhf 2:6.2.1+dfsg-1 [336 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf libgmp-dev armhf 2:6.2.1+dfsg-1 [583 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf libgraphblas3 armhf 1:5.8.1+dfsg-2 [4826 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf libklu1 armhf 1:5.8.1+dfsg-2 [51.1 kB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf libldl2 armhf 1:5.8.1+dfsg-2 [23.0 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf libmongoose2 armhf 1:5.8.1+dfsg-2 [43.3 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf libumfpack5 armhf 1:5.8.1+dfsg-2 [127 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf librbio2 armhf 1:5.8.1+dfsg-2 [31.9 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf libspqr2 armhf 1:5.8.1+dfsg-2 [68.7 kB]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf libsliplu1 armhf 1:5.8.1+dfsg-2 [48.1 kB]
Get:85 http://172.17.0.1/private bookworm-staging/main armhf liblapack-dev armhf 3.9.0-3 [2980 kB]
Get:86 http://172.17.0.1/private bookworm-staging/main armhf libsuitesparse-dev armhf 1:5.8.1+dfsg-2 [5224 kB]
Get:87 http://172.17.0.1/private bookworm-staging/main armhf libglpk-dev armhf 5.0-1 [369 kB]
Get:88 http://172.17.0.1/private bookworm-staging/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB]
Get:89 http://172.17.0.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:90 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [122 kB]
Get:91 http://172.17.0.1/private bookworm-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB]
Get:92 http://172.17.0.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB]
Get:93 http://172.17.0.1/private bookworm-staging/main armhf libjs-underscore all 1.9.1~dfsg-3 [100 kB]
Get:94 http://172.17.0.1/private bookworm-staging/main armhf libjs-sphinxdoc all 3.4.3-2 [127 kB]
Get:95 http://172.17.0.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.12~rc1-2 [121 kB]
Get:96 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.2-1+rpi1 [1413 kB]
Get:97 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-dev armhf 3.9.2-1+rpi1 [3055 kB]
Get:98 http://172.17.0.1/private bookworm-staging/main armhf libpython3-dev armhf 3.9.2-3 [21.7 kB]
Get:99 http://172.17.0.1/private bookworm-staging/main armhf libsbml5 armhf 5.19.0+dfsg-1 [1697 kB]
Get:100 http://172.17.0.1/private bookworm-staging/main armhf libwebp6 armhf 0.6.1-2.1 [225 kB]
Get:101 http://172.17.0.1/private bookworm-staging/main armhf libtiff5 armhf 4.2.0-1 [268 kB]
Get:102 http://172.17.0.1/private bookworm-staging/main armhf libwebpdemux2 armhf 0.6.1-2.1 [86.8 kB]
Get:103 http://172.17.0.1/private bookworm-staging/main armhf libwebpmux3 armhf 0.6.1-2.1 [94.4 kB]
Get:104 http://172.17.0.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:105 http://172.17.0.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:106 http://172.17.0.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:107 http://172.17.0.1/private bookworm-staging/main armhf ttf-bitstream-vera all 1.10-8.1 [223 kB]
Get:108 http://172.17.0.1/private bookworm-staging/main armhf python-matplotlib-data all 3.3.4-1 [4153 kB]
Get:109 http://172.17.0.1/private bookworm-staging/main armhf python-pip-whl all 20.3.4-4 [1948 kB]
Get:110 http://172.17.0.1/private bookworm-staging/main armhf python3-appdirs all 1.4.4-1 [12.7 kB]
Get:111 http://172.17.0.1/private bookworm-staging/main armhf python3-attr all 20.3.0-1 [52.9 kB]
Get:112 http://172.17.0.1/private bookworm-staging/main armhf python3-certifi all 2020.6.20-1 [151 kB]
Get:113 http://172.17.0.1/private bookworm-staging/main armhf python3-pkg-resources all 52.0.0-4 [190 kB]
Get:114 http://172.17.0.1/private bookworm-staging/main armhf python3-chardet all 4.0.0-1 [99.0 kB]
Get:115 http://172.17.0.1/private bookworm-staging/main armhf python3-colorama all 0.4.4-1 [28.5 kB]
Get:116 http://172.17.0.1/private bookworm-staging/main armhf python3-commonmark all 0.9.1-3 [44.9 kB]
Get:117 http://172.17.0.1/private bookworm-staging/main armhf python3-cpuinfo all 5.0.0-2 [19.0 kB]
Get:118 http://172.17.0.1/private bookworm-staging/main armhf python3-six all 1.16.0-2 [17.5 kB]
Get:119 http://172.17.0.1/private bookworm-staging/main armhf python3-cycler all 0.10.0-3 [8084 B]
Get:120 http://172.17.0.1/private bookworm-staging/main armhf python3-dateutil all 2.8.1-6 [79.2 kB]
Get:121 http://172.17.0.1/private bookworm-staging/main armhf python3-depinfo armhf 1.6.0-1 [5920 B]
Get:122 http://172.17.0.1/private bookworm-staging/main armhf python3.9-dev armhf 3.9.2-1+rpi1 [501 kB]
Get:123 http://172.17.0.1/private bookworm-staging/main armhf python3-dev armhf 3.9.2-3 [24.8 kB]
Get:124 http://172.17.0.1/private bookworm-staging/main armhf python3-diskcache all 5.2.1-2 [544 kB]
Get:125 http://172.17.0.1/private bookworm-staging/main armhf python3-future all 0.18.2-5 [349 kB]
Get:126 http://172.17.0.1/private bookworm-staging/main armhf python3-h11 all 0.12.0-1 [47.9 kB]
Get:127 http://172.17.0.1/private bookworm-staging/main armhf python3-sniffio all 1.1.0-1 [6216 B]
Get:128 http://172.17.0.1/private bookworm-staging/main armhf python3-httpcore all 0.12.3-1 [30.3 kB]
Get:129 http://172.17.0.1/private bookworm-staging/main armhf python3-idna all 2.10-1 [37.4 kB]
Get:130 http://172.17.0.1/private bookworm-staging/main armhf python3-rfc3986 all 1.4.0-3 [21.8 kB]
Get:131 http://172.17.0.1/private bookworm-staging/main armhf python3-httpx all 0.16.1-1 [65.5 kB]
Get:132 http://172.17.0.1/private bookworm-staging/main armhf python3-more-itertools all 4.2.0-3 [42.7 kB]
Get:133 http://172.17.0.1/private bookworm-staging/main armhf python3-zipp all 1.0.0-3 [6060 B]
Get:134 http://172.17.0.1/private bookworm-staging/main armhf python3-importlib-metadata all 4.6.4-1 [22.5 kB]
Get:135 http://172.17.0.1/private bookworm-staging/main armhf python3-iniconfig all 1.1.1-1 [6308 B]
Get:136 http://172.17.0.1/private bookworm-staging/main armhf python3-setuptools all 52.0.0-4 [366 kB]
Get:137 http://172.17.0.1/private bookworm-staging/main armhf python3-pyrsistent armhf 0.15.5-1+b2 [56.5 kB]
Get:138 http://172.17.0.1/private bookworm-staging/main armhf python3-jsonschema all 3.2.0-3 [46.3 kB]
Get:139 http://172.17.0.1/private bookworm-staging/main armhf python3-kiwisolver armhf 1.3.1-1 [272 kB]
Get:140 http://172.17.0.1/private bookworm-staging/main armhf python3-pyparsing all 2.4.7-1 [109 kB]
Get:141 http://172.17.0.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.19.5-1 [2930 kB]
Get:142 http://172.17.0.1/private bookworm-staging/main armhf python3-pil armhf 8.1.2+dfsg-0.3 [410 kB]
Get:143 http://172.17.0.1/private bookworm-staging/main armhf python3-matplotlib armhf 3.3.4-1 [4105 kB]
Get:144 http://172.17.0.1/private bookworm-staging/main armhf python3-mpmath all 1.2.1-1 [418 kB]
Get:145 http://172.17.0.1/private bookworm-staging/main armhf python3-swiglpk armhf 4.65.1-1 [54.8 kB]
Get:146 http://172.17.0.1/private bookworm-staging/main armhf python3-sympy all 1.7.1-3 [4031 kB]
Get:147 http://172.17.0.1/private bookworm-staging/main armhf python3-optlang all 1.4.4-2 [67.7 kB]
Get:148 http://172.17.0.1/private bookworm-staging/main armhf python3-packaging all 20.9-2 [33.5 kB]
Get:149 http://172.17.0.1/private bookworm-staging/main armhf python3-tz all 2021.1-1 [34.8 kB]
Get:150 http://172.17.0.1/private bookworm-staging/main armhf python3-pandas-lib armhf 1.1.5+dfsg-2 [2863 kB]
Get:151 http://172.17.0.1/private bookworm-staging/main armhf python3-pandas all 1.1.5+dfsg-2 [2096 kB]
Get:152 http://172.17.0.1/private bookworm-staging/main armhf python3-wheel all 0.34.2-1 [24.0 kB]
Get:153 http://172.17.0.1/private bookworm-staging/main armhf python3-pip all 20.3.4-4 [337 kB]
Get:154 http://172.17.0.1/private bookworm-staging/main armhf python3-pipdeptree armhf 2.0.0-1 [20.3 kB]
Get:155 http://172.17.0.1/private bookworm-staging/main armhf python3-pluggy all 0.13.0-6 [22.3 kB]
Get:156 http://172.17.0.1/private bookworm-staging/main armhf python3-py all 1.10.0-1 [94.2 kB]
Get:157 http://172.17.0.1/private bookworm-staging/main armhf python3-pydantic all 1.7.4-1 [119 kB]
Get:158 http://172.17.0.1/private bookworm-staging/main armhf python3-pygments all 2.7.1+dfsg-2.1 [657 kB]
Get:159 http://172.17.0.1/private bookworm-staging/main armhf python3-toml all 0.10.1-1 [15.9 kB]
Get:160 http://172.17.0.1/private bookworm-staging/main armhf python3-pytest all 6.0.2-2 [211 kB]
Get:161 http://172.17.0.1/private bookworm-staging/main armhf python3-pytest-benchmark all 3.2.2-2 [46.4 kB]
Get:162 http://172.17.0.1/private bookworm-staging/main armhf python3-urllib3 all 1.26.5-1~exp1 [114 kB]
Get:163 http://172.17.0.1/private bookworm-staging/main armhf python3-requests all 2.25.1+dfsg-2 [69.3 kB]
Get:164 http://172.17.0.1/private bookworm-staging/main armhf python3-typing-extensions all 3.7.4.3-1 [29.8 kB]
Get:165 http://172.17.0.1/private bookworm-staging/main armhf python3-rich all 9.11.0-1 [150 kB]
Get:166 http://172.17.0.1/private bookworm-staging/main armhf python3-ruamel.yaml.clib armhf 0.2.2-1+b1 [112 kB]
Get:167 http://172.17.0.1/private bookworm-staging/main armhf python3-ruamel.yaml all 0.16.12-2 [110 kB]
Get:168 http://172.17.0.1/private bookworm-staging/main armhf swig4.0 armhf 4.0.2-1 [1221 kB]
Get:169 http://172.17.0.1/private bookworm-staging/main armhf swig all 4.0.2-1 [330 kB]
Get:170 http://172.17.0.1/private bookworm-staging/main armhf python3-sbml5 armhf 5.19.0+dfsg-1 [2881 kB]
Get:171 http://172.17.0.1/private bookworm-staging/main armhf python3-simplejson armhf 3.17.2-1 [59.0 kB]
Get:172 http://172.17.0.1/private bookworm-staging/main armhf python3-tabulate all 0.8.7-0.1 [33.8 kB]
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Setting up media-types (4.0.0) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
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Setting up libgraphblas3:armhf (1:5.8.1+dfsg-2) ...
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Setting up ttf-bitstream-vera (1.10-8.1) ...
Setting up bsdextrautils (2.36.1-8) ...
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Setting up libicu67:armhf (67.1-7) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up fonts-lyx (2.3.6-1) ...
Setting up libdebhelper-perl (13.4.1) ...
Setting up libbrotli1:armhf (1.0.9-2+b1) ...
Setting up libldl2:armhf (1:5.8.1+dfsg-2) ...
Setting up libmagic1:armhf (1:5.39-3) ...
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Setting up gettext-base (0.21-4) ...
Setting up libmetis5:armhf (5.1.0.dfsg-7) ...
Setting up file (1:5.39-3) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libbtf1:armhf (1:5.8.1+dfsg-2) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libblas3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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Not building database; man-db/auto-update is not 'true'.
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Setting up python3-commonmark (0.9.1-3) ...
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Setting up python3-colorama (0.4.4-1) ...
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Setting up python3-numpy (1:1.19.5-1) ...
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/usr/lib/python3/dist-packages/slow_tests/test_miplib_cplex_interface.py:65: SyntaxWarning: "is not" with a literal. Did you mean "!="?
if status is not "time_limit":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_cplex_interface.py:68: SyntaxWarning: "is" with a literal. Did you mean "=="?
if status is "optimal":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_glpk_interface.py:58: SyntaxWarning: "is not" with a literal. Did you mean "!="?
if status is not "time_limit":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_glpk_interface.py:61: SyntaxWarning: "is" with a literal. Did you mean "=="?
if status is "optimal":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_gurobi_interface.py:65: SyntaxWarning: "is not" with a literal. Did you mean "!="?
if status is not "time_limit":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_gurobi_interface.py:68: SyntaxWarning: "is" with a literal. Did you mean "=="?
if status is "optimal":
Setting up python3-httpcore (0.12.3-1) ...
Setting up python3-matplotlib (3.3.4-1) ...
Setting up python3-importlib-metadata (4.6.4-1) ...
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Setting up python3-pandas (1.1.5+dfsg-2) ...
Setting up python3-httpx (0.16.1-1) ...
Setting up python3-jsonschema (3.2.0-3) ...
Setting up python3-pluggy (0.13.0-6) ...
Setting up python3-pytest (6.0.2-2) ...
Setting up python3-pytest-benchmark (3.2.2-2) ...
Setting up sbuild-build-depends-python-cobra-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-13+rpi1) ...
Processing triggers for ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35.2-2+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.2.1-6+rpi1 gcc-10_10.2.1-6+rpi1 libc6-dev_2.31-13+rpi1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.2.4 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1+rpi1 base-passwd_3.5.51 bash_5.1-2 binutils_2.35.2-2+rpi1 binutils-arm-linux-gnueabihf_2.35.2-2+rpi1 binutils-common_2.35.2-2+rpi1 bsdextrautils_2.36.1-8 bsdutils_1:2.36.1-8 build-essential_12.9 bzip2_1.0.8-4 ca-certificates_20210119 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.2.1-6+rpi1 cython3_0.29.21-3+b1 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.77 debhelper_13.4.1 debianutils_4.11.2 dh-autoreconf_20 dh-python_4.20201102+nmu1 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.2-2 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 fonts-lyx_2.3.6-1 g++_4:10.2.1-1+rpi1 g++-10_10.2.1-6+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.2.1-6+rpi1 gcc-10-base_10.2.1-6+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.3.0-22+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libamd2_1:5.8.1+dfsg-2 libapt-pkg6.0_2.2.4 libarchive-zip-perl_1.68-1 libasan6_10.2.1-6+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-6+rpi1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libbinutils_2.35.2-2+rpi1 libblas-dev_3.9.0-3 libblas3_3.9.0-3 libblkid1_2.36.1-8 libbrotli1_1.0.9-2+b1 libbsd0_0.11.3-1 libbtf1_1:5.8.1+dfsg-2 libbz2-1.0_1.0.8-4 libc-bin_2.31-13+rpi1 libc-dev-bin_2.31-13+rpi1 libc6_2.31-13+rpi1 libc6-dev_2.31-13+rpi1 libcamd2_1:5.8.1+dfsg-2 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-6+rpi1 libccolamd2_1:5.8.1+dfsg-2 libcholmod3_1:5.8.1+dfsg-2 libcolamd2_1:5.8.1+dfsg-2 libcom-err2_1.46.2-2 libcrypt-dev_1:4.4.18-4 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libjs-underscore_1.9.1~dfsg-3 libk5crypto3_1.18.3-6 libkeyutils1_1.6.1-2 libklu1_1:5.8.1+dfsg-2 libkrb5-3_1.18.3-6 libkrb5support0_1.18.3-6 libksba8_1.5.0-3 liblapack-dev_3.9.0-3 liblapack3_3.9.0-3 liblcms2-2_2.12~rc1-2 libldap-2.4-2_2.4.57+dfsg-3 libldl2_1:5.8.1+dfsg-2 liblocale-gettext-perl_1.07-4+b1 libltdl7_2.4.6-15 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmd0_1.0.3-3 libmetis5_5.1.0.dfsg-7 libmongoose2_1:5.8.1+dfsg-2 libmount1_2.36.1-8 libmpc3_1.2.0-1 libmpdec3_2.5.1-1+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-2 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-9 libpam-modules-bin_1.4.0-9 libpam-runtime_1.4.0-9 libpam0g_1.4.0-9 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-4+deb11u1 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libpython3-dev_3.9.2-3 libpython3-stdlib_3.9.2-3 libpython3.9_3.9.2-1+rpi1 libpython3.9-dev_3.9.2-1+rpi1 libpython3.9-minimal_3.9.2-1+rpi1 libpython3.9-stdlib_3.9.2-1+rpi1 librbio2_1:5.8.1+dfsg-2 libreadline8_8.1-1 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libsbml5_5.19.0+dfsg-1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsliplu1_1:5.8.1+dfsg-2 libsmartcols1_2.36.1-8 libspqr2_1:5.8.1+dfsg-2 libsqlite3-0_3.34.1-3 libss2_1.46.2-2 libssl1.1_1.1.1k-1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 libsub-override-perl_0.09-2 libsuitesparse-dev_1:5.8.1+dfsg-2 libsuitesparseconfig5_1:5.8.1+dfsg-2 libsystemd0_247.3-6+rpi1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtiff5_4.2.0-1 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-15 libubsan1_10.2.1-6+rpi1 libuchardet0_0.0.7-1 libudev1_247.3-6+rpi1 libumfpack5_1:5.8.1+dfsg-2 libunistring2_0.9.10-4 libuuid1_2.36.1-8 libwebp6_0.6.1-2.1 libwebpdemux2_0.6.1-2.1 libwebpmux3_0.6.1-2.1 libxau6_1:1.0.9-1 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxml2_2.9.10+dfsg-6.7 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.2-2 lsb-base_11.1.0+rpi1 m4_1.4.18-5 mailcap_3.69 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 mime-support_3.66 mount_2.36.1-8 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 netbase_6.3 openssl_1.1.1k-1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-4+deb11u1 perl-base_5.32.1-4+deb11u1 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python-matplotlib-data_3.3.4-1 python-pip-whl_20.3.4-4 python3_3.9.2-3 python3-appdirs_1.4.4-1 python3-attr_20.3.0-1 python3-certifi_2020.6.20-1 python3-chardet_4.0.0-1 python3-colorama_0.4.4-1 python3-commonmark_0.9.1-3 python3-cpuinfo_5.0.0-2 python3-cycler_0.10.0-3 python3-dateutil_2.8.1-6 python3-depinfo_1.6.0-1 python3-dev_3.9.2-3 python3-diskcache_5.2.1-2 python3-distutils_3.9.2-1 python3-future_0.18.2-5 python3-h11_0.12.0-1 python3-httpcore_0.12.3-1 python3-httpx_0.16.1-1 python3-idna_2.10-1 python3-importlib-metadata_4.6.4-1 python3-iniconfig_1.1.1-1 python3-jsonschema_3.2.0-3 python3-kiwisolver_1.3.1-1 python3-lib2to3_3.9.2-1 python3-matplotlib_3.3.4-1 python3-minimal_3.9.2-3 python3-more-itertools_4.2.0-3 python3-mpmath_1.2.1-1 python3-numpy_1:1.19.5-1 python3-optlang_1.4.4-2 python3-packaging_20.9-2 python3-pandas_1.1.5+dfsg-2 python3-pandas-lib_1.1.5+dfsg-2 python3-pil_8.1.2+dfsg-0.3 python3-pip_20.3.4-4 python3-pipdeptree_2.0.0-1 python3-pkg-resources_52.0.0-4 python3-pluggy_0.13.0-6 python3-py_1.10.0-1 python3-pydantic_1.7.4-1 python3-pygments_2.7.1+dfsg-2.1 python3-pyparsing_2.4.7-1 python3-pyrsistent_0.15.5-1+b2 python3-pytest_6.0.2-2 python3-pytest-benchmark_3.2.2-2 python3-requests_2.25.1+dfsg-2 python3-rfc3986_1.4.0-3 python3-rich_9.11.0-1 python3-ruamel.yaml_0.16.12-2 python3-ruamel.yaml.clib_0.2.2-1+b1 python3-sbml5_5.19.0+dfsg-1 python3-setuptools_52.0.0-4 python3-simplejson_3.17.2-1 python3-six_1.16.0-2 python3-sniffio_1.1.0-1 python3-swiglpk_4.65.1-1 python3-sympy_1.7.1-3 python3-tabulate_0.8.7-0.1 python3-toml_0.10.1-1 python3-typing-extensions_3.7.4.3-1 python3-tz_2021.1-1 python3-urllib3_1.26.5-1~exp1 python3-wheel_0.34.2-1 python3-zipp_1.0.0-3 python3.9_3.9.2-1+rpi1 python3.9-dev_3.9.2-1+rpi1 python3.9-minimal_3.9.2-1+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-cobra-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.14 swig_4.0.2-1 swig4.0_4.0.2-1 sysvinit-utils_2.96-7 tar_1.34+dfsg-1 ttf-bitstream-vera_1.10-8.1 tzdata_2021a-1 util-linux_2.36.1-8 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.33g7jwC5/trustedkeys.kbx': General error
gpgv: Signature made Sun Aug 22 19:26:27 2021 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-cobra_0.22.1-1.dsc
dpkg-source: info: extracting python-cobra in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-cobra_0.22.1.orig.tar.gz
dpkg-source: info: unpacking python-cobra_0.22.1-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying mathjax.patch
dpkg-source: info: applying no_importlib_resources_for_test.patch
dpkg-source: info: applying xfail_test_show_versions.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-43138ece-5cf8-42fc-a9a2-4777fa392c2f
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-cobra
dpkg-buildpackage: info: source version 0.22.1-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:232: python3.9 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
rm -f cobra/solvers/cglpk.c
rm -rf .pytest_cache
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra
copying src/cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra
copying src/cobra/exceptions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/configuration.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/formula.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/gene.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/group.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/object.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/singleton.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/solution.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/species.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/fastcc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/helpers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io
copying src/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io
copying src/cobra/io/dict.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io
copying src/cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io
copying src/cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io
copying src/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io
copying src/cobra/io/yaml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation
copying src/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation
copying src/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation
copying src/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation
copying src/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation
copying src/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium
copying src/cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium
copying src/cobra/medium/annotations.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium
copying src/cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium
copying src/cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling
copying src/cobra/sampling/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling
copying src/cobra/sampling/achr.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling
copying src/cobra/sampling/core.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling
copying src/cobra/sampling/hr_sampler.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling
copying src/cobra/sampling/optgp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling
copying src/cobra/sampling/sampling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary
copying src/cobra/summary/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary
copying src/cobra/summary/metabolite_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary
copying src/cobra/summary/model_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary
copying src/cobra/summary/reaction_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary
copying src/cobra/summary/summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test
copying src/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test
copying src/cobra/test/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util
copying src/cobra/util/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util
copying src/cobra/util/array.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util
copying src/cobra/util/context.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util
copying src/cobra/util/process_pool.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util
copying src/cobra/util/solver.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util
copying src/cobra/util/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web
copying src/cobra/io/web/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web
copying src/cobra/io/web/abstract_model_repository.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web
copying src/cobra/io/web/bigg_models_repository.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web
copying src/cobra/io/web/biomodels_repository.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web
copying src/cobra/io/web/load.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation
copying src/cobra/test/test_manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation
copying src/cobra/test/test_manipulation/test_annotate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation
copying src/cobra/test/test_manipulation/test_delete.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation
copying src/cobra/test/test_manipulation/test_modify.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation
copying src/cobra/test/test_manipulation/test_validate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation
copying src/cobra/io/schema_v1.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/JSON_with_inf_bounds.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/annotation.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/e_coli_core.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/example_notes.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/fbc_ex1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/fbc_ex2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/iJO1366.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/invalid_annotation_format.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/mini.yml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/textbook_pfba_fva.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/valid_annotation_format.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/valid_annotation_output.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/validation.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build; python3.9 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.9.2, pytest-6.0.2, py-1.10.0, pluggy-0.13.0
benchmark: 3.2.2 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000)
rootdir: /<<PKGBUILDDIR>>, configfile: tox.ini
plugins: benchmark-3.2.2
collected 11 items
cobra/test/test_manipulation/test_annotate.py . [ 9%]
cobra/test/test_manipulation/test_delete.py ...... [ 63%]
cobra/test/test_manipulation/test_modify.py .. [ 81%]
cobra/test/test_manipulation/test_validate.py .. [100%]
=============================== warnings summary ===============================
cobra/core/dictlist.py:214
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/dictlist.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="?
if current_length is 0:
cobra/core/gene.py:247
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/gene.py:247: DeprecationWarning: invalid escape sequence \(
the_gene_re = re.compile("(^|(?<=( |\()))%s(?=( |\)|$))" % re.escape(self.id))
cobra/core/gene.py:267
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/gene.py:267: DeprecationWarning: invalid escape sequence \(
"(^|(?<=( |\()))%s(?=( |\)|$))" % re.escape(other_gene.id)
cobra/core/reaction.py:42
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/reaction.py:42: DeprecationWarning: invalid escape sequence \s
compartment_finder = re.compile("^\s*(\[[A-Za-z]\])\s*:*")
.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/test_annotate.py::test_sbo_annotation
/usr/lib/python3/dist-packages/optlang/interface.py:1358: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.10 it will stop working
if isinstance(stuff, collections.Iterable):
.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/test_delete.py: 49 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/delete.py:140: DeprecationWarning: The function `find_gene_knockout_reactions` has outlived its purpose. It will be removed in the next minor version (0.23.0).
warn(
-- Docs: https://docs.pytest.org/en/stable/warnings.html
======================= 11 passed, 54 warnings in 32.76s =======================
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-cobra
running install
running build
running build_py
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/exceptions.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/configuration.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/formula.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/gene.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/group.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/object.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/singleton.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/solution.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/species.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/configuration.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/singleton.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/dictlist.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/gene.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/species.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/object.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/metabolite.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/formula.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/model.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/group.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/reaction.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/solution.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/fastcc.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/helpers.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/dict.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/json.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/mat.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/yaml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/abstract_model_repository.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/bigg_models_repository.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/biomodels_repository.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/load.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/load.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/schema_v1.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/dict.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/json.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/mat.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/sbml.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/yaml.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/delete.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/modify.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/validate.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium/annotations.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__pycache__/annotations.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/achr.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/core.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/hr_sampler.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/optgp.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/sampling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/achr.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/core.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/optgp.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/sampling.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary/metabolite_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary/model_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary/reaction_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary/summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/summary.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/model_summary.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/conftest.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/test_annotate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/test_delete.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/test_modify.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/test_validate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/__pycache__/test_annotate.cpython-39-pytest-6.0.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/__pycache__/test_delete.cpython-39-pytest-6.0.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/__pycache__/test_modify.cpython-39-pytest-6.0.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/__pycache__/test_validate.cpython-39-pytest-6.0.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/JSON_with_inf_bounds.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/annotation.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/e_coli_core.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/example_notes.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/fbc_ex1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/fbc_ex2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/iJO1366.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/invalid_annotation_format.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini.yml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/textbook_pfba_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/valid_annotation_format.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/valid_annotation_output.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/validation.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/__pycache__/conftest.cpython-39-pytest-6.0.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/array.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/context.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/process_pool.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/util.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/array.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/context.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/solver.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/util.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/process_pool.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/__pycache__/exceptions.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/.benchmarks
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/exceptions.py to exceptions.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/configuration.py to configuration.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/dictlist.py to dictlist.cpython-39.pyc
/usr/lib/python3.9/dist-packages/cobra/core/dictlist.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="?
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/formula.py to formula.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/gene.py to gene.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/group.py to group.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/metabolite.py to metabolite.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/model.py to model.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/object.py to object.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/reaction.py to reaction.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/singleton.py to singleton.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/solution.py to solution.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/species.py to species.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/room.py to room.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/dict.py to dict.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/json.py to json.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/mat.py to mat.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/sbml.py to sbml.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/yaml.py to yaml.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/load.py to load.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/delete.py to delete.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/modify.py to modify.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/validate.py to validate.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/annotations.py to annotations.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/achr.py to achr.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/core.py to core.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-39.pyc
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byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/summary.py to summary.cpython-39.pyc
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running install_egg_info
running egg_info
creating src/cobra.egg-info
writing src/cobra.egg-info/PKG-INFO
writing dependency_links to src/cobra.egg-info/dependency_links.txt
writing requirements to src/cobra.egg-info/requires.txt
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writing manifest file 'src/cobra.egg-info/SOURCES.txt'
reading manifest file 'src/cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'src/cobra.egg-info/SOURCES.txt'
Copying src/cobra.egg-info to /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra-0.22.1.egg-info
Skipping SOURCES.txt
running install_scripts
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -X update_pickles.py --package=python-cobra-data
dh_install: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions).
dh_install --remaining-packages
find debian -name __pycache__ | xargs rm -rf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
I: dh_python3 pydist:229: Cannot find package that provides python_libsbml. Please add package that provides it to Build-Depends or add "python_libsbml python3-libsbml" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info.
dh_installsystemduser -a -O--buildsystem=pybuild
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dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
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dh_makeshlibs -a -a -O--buildsystem=pybuild
dh_shlibdeps -a -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.22.1-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../python-cobra_0.22.1-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-08-25T07:13:33Z
Finished
--------
I: Built successfully
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+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-cobra_0.22.1-1_armhf.changes:
------------------------------------
Format: 1.8
Date: Mon, 23 Aug 2021 00:54:10 +0530
Source: python-cobra
Binary: python3-cobra
Architecture: armhf
Version: 0.22.1-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
python3-cobra - constraint-based modeling of biological networks with Python 3
Changes:
python-cobra (0.22.1-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
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Files:
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python3-cobra_0.22.1-1_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 115588 bytes: control archive=3472 bytes.
1199 bytes, 19 lines control
7496 bytes, 82 lines md5sums
251 bytes, 12 lines * postinst #!/bin/sh
400 bytes, 12 lines * prerm #!/bin/sh
Package: python3-cobra
Source: python-cobra
Version: 0.22.1-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 623
Depends: python3-appdirs (>= 1.4), python3-appdirs (<< 2), python3-depinfo, python3-diskcache, python3-future, python3-httpx, python3-numpy, python3-optlang, python3-pandas (>= 0.17.0), python3-pydantic, python3-rich, python3-ruamel.yaml, python3-swiglpk (>= 4.65.1), python3:any, python-cobra-data (= 0.22.1-1), python3-simplejson, python3-tabulate, python3-sbml5
Suggests: python3-matplotlib, qsopt-ex
Section: python
Priority: optional
Homepage: https://opencobra.github.io/cobrapy/
Description: constraint-based modeling of biological networks with Python 3
COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
used for genome-scale modeling of metabolic networks in both prokaryotes
and eukaryotes. COBRApy is a constraint-based modeling package that is
designed to accommodate the biological complexity of the next generation
of COBRA models and provides access to commonly used COBRA methods, such
as flux balance analysis, flux variability analysis, and gene deletion
analyses.
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-rw-r--r-- root/root 3194 2021-07-13 21:59 ./usr/lib/python3/dist-packages/cobra/io/schema_v1.json
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-rw-r--r-- root/root 2078 2021-08-22 19:24 ./usr/share/doc/python3-cobra/copyright
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Purging /<<BUILDDIR>>
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| Summary |
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Build Architecture: armhf
Build-Space: 25872
Build-Time: 99
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1218
Job: python-cobra_0.22.1-1
Machine Architecture: armhf
Package: python-cobra
Package-Time: 1374
Source-Version: 0.22.1-1
Space: 25872
Status: successful
Version: 0.22.1-1
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Finished at 2021-08-25T07:13:33Z
Build needed 00:22:54, 25872k disc space