Raspbian Package Auto-Building

python-biopython → 1.70+dfsg-2 → armhf → 2017-08-06 08:11:21

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard

+==============================================================================+
| python-biopython 1.70+dfsg-2 (armhf)         Sun, 06 Aug 2017 07:25:48 +0000 |
+==============================================================================+

Package: python-biopython
Version: 1.70+dfsg-2
Source Version: 1.70+dfsg-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-34156d21-9235-443c-a1f1-ae25af4b4688' with '<<CHROOT>>'

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| Update chroot                                                                |
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Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.1 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [11.9 MB]
Fetched 22.0 MB in 29s (751 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

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| Fetch source files                                                           |
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Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'python-biopython' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/python-biopython.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/python-biopython.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 8715 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main python-biopython 1.70+dfsg-2 (dsc) [3054 B]
Get:2 http://172.17.0.1/private buster-staging/main python-biopython 1.70+dfsg-2 (tar) [8698 kB]
Get:3 http://172.17.0.1/private buster-staging/main python-biopython 1.70+dfsg-2 (diff) [13.5 kB]
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Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-biopython-4knQvI/python-biopython-1.70+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-biopython-4knQvI' with '<<BUILDDIR>>'

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| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-mw5XMO/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-mw5XMO/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-mw5XMO/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-mw5XMO/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-mw5XMO/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-mw5XMO/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-mw5XMO/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-mw5XMO/apt_archive ./ Packages [433 B]
Fetched 2109 B in 0s (3137 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 31 not upgraded.
Need to get 772 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-mw5XMO/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [772 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 772 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12684 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 10), python-all-dev, python3-all-dev, python-numpy, python3-numpy, flex, python-reportlab, python3-reportlab, hevea, texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, ncbi-blast+, phylip, phyml, prank, probcons, python-mysqldb, python3-mysqldb, python-matplotlib, python3-matplotlib, python-pil, python3-pil, python-rdflib (>= 4), python3-rdflib, python-renderpm, python3-renderpm, python-psycopg2, python3-psycopg2, python-scipy, python3-scipy, python-setuptools, python3-setuptools, t-coffee, wise (>= 2.4.1-16)
Filtered Build-Depends: debhelper (>= 10), python-all-dev, python3-all-dev, python-numpy, python3-numpy, flex, python-reportlab, python3-reportlab, hevea, texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, ncbi-blast+, phylip, phyml, prank, probcons, python-mysqldb, python3-mysqldb, python-matplotlib, python3-matplotlib, python-pil, python3-pil, python-rdflib (>= 4), python3-rdflib, python-renderpm, python3-renderpm, python-psycopg2, python3-psycopg2, python-scipy, python3-scipy, python-setuptools, python3-setuptools, t-coffee, wise (>= 2.4.1-16)
dpkg-deb: building package 'sbuild-build-depends-python-biopython-dummy' in '/<<BUILDDIR>>/resolver-mw5XMO/apt_archive/sbuild-build-depends-python-biopython-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-python-biopython-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-mw5XMO/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-mw5XMO/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-mw5XMO/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-mw5XMO/apt_archive ./ Sources [778 B]
Get:5 copy:/<<BUILDDIR>>/resolver-mw5XMO/apt_archive ./ Packages [819 B]
Fetched 2930 B in 0s (4005 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install python-biopython build dependencies (apt-based resolver)
----------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils clustalo clustalw
  cpp-6 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dialign dssp
  emboss emboss-data emboss-lib fasttree file flex fontconfig
  fontconfig-config fonts-dejavu-core fonts-lmodern fonts-lyx g++-6 gcc-6
  gcc-6-base gcc-7-base gettext gettext-base ghostscript gnome-icon-theme
  groff-base gsfonts gtk-update-icon-cache hevea hicolor-icon-theme
  intltool-debian libarchive-zip-perl libargtable2-0 libart-2.0-2 libasan3
  libatk1.0-0 libatk1.0-data libatomic1 libavahi-client3 libavahi-common-data
  libavahi-common3 libblas-common libblas3 libboost-iostreams1.58.0
  libboost-program-options1.58.0 libboost-system1.58.0 libboost-thread1.58.0
  libbsd0 libcairo2 libcc1-0 libcroco3 libcups2 libcupsimage2 libdatrie1
  libexpat1 libexpat1-dev libffi6 libfile-stripnondeterminism-perl
  libfontconfig1 libfreetype6 libgcc-6-dev libgcc1 libgd3 libgdk-pixbuf2.0-0
  libgdk-pixbuf2.0-common libgfortran3 libglib2.0-0 libgnutls30 libgomp1
  libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgtk2.0-0
  libgtk2.0-common libharfbuzz-icu0 libharfbuzz0b libhogweed4 libhpdf-2.2.1
  libhwloc-plugins libhwloc5 libibverbs1 libice6 libicu57 libidn2-0
  libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libjs-jquery
  libjs-jquery-ui libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3
  libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 libldap-common libltdl7
  libmagic-mgc libmagic1 libmariadbclient18 libmpdec2 libnetpbm10 libnettle6
  libnl-3-200 libnl-route-3-200 libnspr4 libnss3 libopenjp2-7 libopenmpi2
  libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
  libpaper-utils libpaper1 libpciaccess0 libpipeline1 libpixman-1-0 libpng12-0
  libpoppler64 libpotrace0 libpq5 libptexenc1 libpython-all-dev libpython-dev
  libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
  libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
  libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib
  libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib
  librsvg2-2 librsvg2-common libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6
  libssl1.1 libstdc++-6-dev libstdc++6 libsynctex1 libtasn1-6 libtexlua52
  libtexluajit2 libthai-data libthai0 libtiff5 libtimedate-perl libtool
  libubsan0 libunistring2 libwebp6 libwebpdemux2 libwebpmux3 libx11-6
  libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1
  libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6
  libxinerama1 libxml2 libxmu6 libxpm4 libxrandr2 libxrender1 libxt6
  libzzip-0-13 m4 mafft man-db mime-support muscle mysql-common ncbi-blast+
  ncbi-data netpbm ocaml-base-nox ocl-icd-libopencl1 openmpi-bin
  openmpi-common phylip phyml po-debconf poppler-data prank
  preview-latex-style probcons python python-all python-all-dev python-cycler
  python-dateutil python-decorator python-dev python-functools32
  python-isodate python-matplotlib python-matplotlib-data python-minimal
  python-mysqldb python-numpy python-olefile python-pil python-pkg-resources
  python-psycopg2 python-pyparsing python-rdflib python-renderpm
  python-reportlab python-reportlab-accel python-scipy python-setuptools
  python-six python-subprocess32 python-tz python2.7 python2.7-dev
  python2.7-minimal python3 python3-all python3-all-dev python3-cycler
  python3-dateutil python3-decorator python3-dev python3-isodate
  python3-matplotlib python3-minimal python3-mysqldb python3-numpy
  python3-olefile python3-pil python3-pkg-resources python3-psycopg2
  python3-pyparsing python3-rdflib python3-renderpm python3-reportlab
  python3-reportlab-accel python3-scipy python3-setuptools python3-six
  python3-tz python3.5 python3.5-dev python3.5-minimal python3.6 python3.6-dev
  python3.6-minimal shared-mime-info t-coffee t1utils tex-common texlive-base
  texlive-binaries texlive-fonts-recommended texlive-latex-base
  texlive-latex-extra texlive-latex-recommended texlive-pictures
  ttf-bitstream-vera ucf wise wise-data x11-common xdg-utils
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation clustalx seaview gcc-6-locales dh-make emboss-doc emboss-test
  embassy bison gcc-6-doc libstdc++6-6-dbg libgcc1-dbg libgomp1-dbg
  libitm1-dbg libatomic1-dbg libasan3-dbg liblsan0-dbg libtsan0-dbg
  libubsan0-dbg libcilkrts5-dbg libmpx2-dbg libquadmath0-dbg gettext-doc
  libasprintf-dev libgettextpo-dev ghostscript-x groff hevea-doc cups-common
  libgd-tools gnutls-bin krb5-doc krb5-user gvfs libhwloc-contrib-plugins
  libjs-jquery-ui-docs liblcms2-utils pciutils librsvg2-bin libstdc++-6-doc
  libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser
  opencl-icd gfortran phylip-doc libmail-box-perl poppler-utils
  fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic
  | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum
  probcons-extra python-doc python-tk python-cycler-doc dvipng ffmpeg
  gir1.2-gtk-3.0 inkscape ipython python-cairocffi python-configobj
  python-excelerator python-gobject python-gtk2 python-matplotlib-doc
  python-nose python-qt4 python-sip python-tornado python-traits
  python-wxgtk3.0 texlive-extra-utils ttf-staypuft default-mysql-server
  | virtual-mysql-server python-egenix-mxdatetime python-mysqldb-dbg
  python-numpy-dbg python-numpy-doc python-pil-doc python-pil-dbg
  python-psycopg2-doc python-pyparsing-doc python-rdflib-doc
  python-rdflib-tools python-renderpm-dbg pdf-viewer python-egenix-mxtexttools
  python-reportlab-doc python-scipy-doc python-setuptools-doc python2.7-doc
  binfmt-support python3-doc python3-tk python3-venv ipython3
  python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-nose
  python3-pyqt4 python3-sip python3-tornado python3-mysqldb-dbg
  python3-numpy-dbg python3-pil-dbg python3-renderpm-dbg
  python3-egenix-mxtexttools python3.5-venv python3.5-doc python3.6-venv
  python3.6-doc boxshade t-coffee-examples perl-tk xpdf-reader | pdf-viewer
  python-pygments libfile-which-perl libspreadsheet-parseexcel-perl
  texlive-pstricks dot2tex prerex ruby-tcltk | libtcltk-ruby wise-doc gvfs-bin
Recommended packages:
  primer3 libfl-dev curl | wget | lynx-cur libcupsfilters1
  libarchive-cpio-perl libglib2.0-data xdg-user-dirs fonts-droid-fallback
  libgail-common libgtk2.0-bin javascript-common krb5-locales libsasl2-modules
  libltdl-dev xml-core blast2 libwww-perl lynx ruby libmail-sendmail-perl
  python-glade2 python-imaging python-tk python-egenix-mxdatetime
  python-sparqlwrapper python-html5lib python3-tk python3-sparqlwrapper
  python3-html5lib amap-align dialign-tx fsa kalign libsoap-lite-perl
  libxml-simple-perl mustang poa proda tm-align lmodern wish tex-gyre
  texlive-fonts-recommended-doc tipa texlive-latex-base-doc
  texlive-latex-extra-doc texlive-plain-generic prosper
  texlive-latex-recommended-doc ruby | ruby-interpreter texlive-pictures-doc
  tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
  x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils clustalo clustalw
  debhelper dh-autoreconf dh-python dh-strip-nondeterminism dialign dssp
  emboss emboss-data emboss-lib fasttree file flex fontconfig
  fontconfig-config fonts-dejavu-core fonts-lmodern fonts-lyx gcc-7-base
  gettext gettext-base ghostscript gnome-icon-theme groff-base gsfonts
  gtk-update-icon-cache hevea hicolor-icon-theme intltool-debian
  libarchive-zip-perl libargtable2-0 libart-2.0-2 libatk1.0-0 libatk1.0-data
  libavahi-client3 libavahi-common-data libavahi-common3 libblas-common
  libblas3 libboost-iostreams1.58.0 libboost-program-options1.58.0
  libboost-system1.58.0 libboost-thread1.58.0 libbsd0 libcairo2 libcroco3
  libcups2 libcupsimage2 libdatrie1 libexpat1 libexpat1-dev libffi6
  libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgd3
  libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libglib2.0-0
  libgnutls30 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgtk2.0-0
  libgtk2.0-common libharfbuzz-icu0 libharfbuzz0b libhogweed4 libhpdf-2.2.1
  libhwloc-plugins libhwloc5 libibverbs1 libice6 libicu57 libidn2-0
  libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libjs-jquery
  libjs-jquery-ui libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3
  libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 libldap-common libltdl7
  libmagic-mgc libmagic1 libmariadbclient18 libmpdec2 libnetpbm10 libnettle6
  libnl-3-200 libnl-route-3-200 libnspr4 libnss3 libopenjp2-7 libopenmpi2
  libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
  libpaper-utils libpaper1 libpciaccess0 libpipeline1 libpixman-1-0 libpng12-0
  libpoppler64 libpotrace0 libpq5 libptexenc1 libpython-all-dev libpython-dev
  libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
  libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
  libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib
  libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib
  librsvg2-2 librsvg2-common libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6
  libssl1.1 libsynctex1 libtasn1-6 libtexlua52 libtexluajit2 libthai-data
  libthai0 libtiff5 libtimedate-perl libtool libunistring2 libwebp6
  libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxaw7
  libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1
  libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml2 libxmu6 libxpm4
  libxrandr2 libxrender1 libxt6 libzzip-0-13 m4 mafft man-db mime-support
  muscle mysql-common ncbi-blast+ ncbi-data netpbm ocaml-base-nox
  ocl-icd-libopencl1 openmpi-bin openmpi-common phylip phyml po-debconf
  poppler-data prank preview-latex-style probcons python python-all
  python-all-dev python-cycler python-dateutil python-decorator python-dev
  python-functools32 python-isodate python-matplotlib python-matplotlib-data
  python-minimal python-mysqldb python-numpy python-olefile python-pil
  python-pkg-resources python-psycopg2 python-pyparsing python-rdflib
  python-renderpm python-reportlab python-reportlab-accel python-scipy
  python-setuptools python-six python-subprocess32 python-tz python2.7
  python2.7-dev python2.7-minimal python3 python3-all python3-all-dev
  python3-cycler python3-dateutil python3-decorator python3-dev
  python3-isodate python3-matplotlib python3-minimal python3-mysqldb
  python3-numpy python3-olefile python3-pil python3-pkg-resources
  python3-psycopg2 python3-pyparsing python3-rdflib python3-renderpm
  python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools
  python3-six python3-tz python3.5 python3.5-dev python3.5-minimal python3.6
  python3.6-dev python3.6-minimal sbuild-build-depends-python-biopython-dummy
  shared-mime-info t-coffee t1utils tex-common texlive-base texlive-binaries
  texlive-fonts-recommended texlive-latex-base texlive-latex-extra
  texlive-latex-recommended texlive-pictures ttf-bitstream-vera ucf wise
  wise-data x11-common xdg-utils
The following packages will be upgraded:
  cpp-6 g++-6 gcc-6 gcc-6-base libasan3 libatomic1 libcc1-0 libgcc-6-dev
  libgcc1 libgomp1 libstdc++-6-dev libstdc++6 libubsan0
13 upgraded, 285 newly installed, 0 to remove and 18 not upgraded.
Need to get 355 MB of archives.
After this operation, 1344 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-mw5XMO/apt_archive ./ sbuild-build-depends-python-biopython-dummy 0.invalid.0 [1016 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf gcc-7-base armhf 7.1.0-10+rpi1 [180 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libgcc1 armhf 1:7.1.0-10+rpi1 [38.6 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libstdc++6 armhf 7.1.0-10+rpi1 [334 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-1 [95.7 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.12+nmu1 [178 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.4.2-1 [24.2 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf flex armhf 2.6.1-1.3 [414 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libexpat1 armhf 2.2.2-2 [66.3 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libfreetype6 armhf 2.8-0.2 [393 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf ucf all 3.0036 [70.2 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf ttf-bitstream-vera all 1.10-8 [352 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.12.3-0.2 [304 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.12.3-0.2 [349 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.12.3-0.2 [435 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libart-2.0-2 armhf 2.3.21-2 [63.8 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libjbig0 armhf 2.1-3.1 [27.5 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.12-1 [129 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.4-3 [290 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.4-3 [683 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libxext6 armhf 2:1.3.3-1 [48.1 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf poppler-data all 0.4.7-8 [1451 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.13-2 [389 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.13-2 [1178 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.13-2 [40.5 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libffi6 armhf 3.2.1-6 [18.7 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libssl1.1 armhf 1.1.0f-3 [1105 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.13-2 [1827 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.13-2 [285 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.13-2 [20.0 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.13-2 [154 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libpython3.5-minimal armhf 3.5.4~rc1-1 [573 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf python3.5-minimal armhf 3.5.4~rc1-1 [1451 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.5.3-3 [35.4 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-1 [67.5 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libpython3.5-stdlib armhf 3.5.4~rc1-1 [2117 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf python3.5 armhf 3.5.4~rc1-1 [241 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.5.3-3 [18.8 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf dh-python all 2.20170125 [86.8 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.5.3-3 [21.8 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.2-1 [574 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.2-1 [1212 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf tex-common all 6.07 [566 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 7.1.0-10+rpi1 [63.4 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libatomic1 armhf 7.1.0-10+rpi1 [6720 B]
Get:54 http://172.17.0.1/private buster-staging/main armhf libasan3 armhf 6.4.0-1+rpi1 [267 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libubsan0 armhf 7.1.0-10+rpi1 [100 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf g++-6 armhf 6.4.0-1+rpi1 [5553 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libstdc++-6-dev armhf 6.4.0-1+rpi1 [1450 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf gcc-6 armhf 6.4.0-1+rpi1 [5429 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libgcc-6-dev armhf 6.4.0-1+rpi1 [511 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libcc1-0 armhf 7.1.0-10+rpi1 [30.3 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf cpp-6 armhf 6.4.0-1+rpi1 [5112 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf gcc-6-base armhf 6.4.0-1+rpi1 [181 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libboost-iostreams1.58.0 armhf 1.58.0+dfsg-5.1+rpi1+b1 [48.4 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.30-1 [222 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.30-1 [105 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.30-1 [63.4 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-2+b1 [117 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libnettle6 armhf 3.3-1 [204 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libhogweed4 armhf 3.3-1 [126 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libunistring2 armhf 0.9.7-2 [351 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libidn2-0 armhf 2.0.2-1 [55.7 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libp11-kit0 armhf 0.23.7-3 [172 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libtasn1-6 armhf 4.12-2.1 [46.0 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libgnutls30 armhf 3.5.14-2 [806 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libkrb5support0 armhf 1.15.1-2 [58.4 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libk5crypto3 armhf 1.15.1-2 [115 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libkrb5-3 armhf 1.15.1-2 [265 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.15.1-2 [132 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libsasl2-modules-db armhf 2.1.27~101-g0780600+dfsg-3 [66.9 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libsasl2-2 armhf 2.1.27~101-g0780600+dfsg-3 [98.1 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libldap-common all 2.4.45+dfsg-1 [87.0 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libldap-2.4-2 armhf 2.4.45+dfsg-1 [197 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-6 [7427 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-3 [601 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-2 [736 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-2 [433 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libargtable2-0 armhf 13-1 [15.9 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf clustalo armhf 1.2.4-1 [227 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf clustalw armhf 2.1+lgpl-5 [245 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 14 [15.9 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.038-1 [17.6 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.038-1 [11.1 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.52.3-1 [2576 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-1 [132 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-2+b1 [1220 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf debhelper all 10.6.4 [970 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf dialign armhf 2.2.1-9 [134 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libboost-program-options1.58.0 armhf 1.58.0+dfsg-5.1+rpi1+b1 [137 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf libboost-system1.58.0 armhf 1.58.0+dfsg-5.1+rpi1+b1 [31.1 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libboost-thread1.58.0 armhf 1.58.0+dfsg-5.1+rpi1+b1 [63.4 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf dssp armhf 2.2.1-3 [228 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libjpeg62-turbo armhf 1:1.5.1-2 [109 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.8-4 [219 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf libwebp6 armhf 0.6.0-3 [217 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libxpm4 armhf 1:3.5.12-1 [43.6 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf libgd3 armhf 2.2.4-2 [113 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libpng12-0 armhf 1.2.54-6 [160 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf libhpdf-2.2.1 armhf 2.2.1-1.1 [311 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf mysql-common all 5.8+1.0.3 [5850 B]
Get:118 http://172.17.0.1/private buster-staging/main armhf libmariadbclient18 armhf 10.1.24-6+rpi1+b1 [708 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf libpq5 armhf 9.6.3-4+b1 [115 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf emboss-lib armhf 6.6.0+dfsg-6 [2570 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf emboss-data all 6.6.0+dfsg-6 [61.1 MB]
Get:122 http://172.17.0.1/private buster-staging/main armhf emboss armhf 6.6.0+dfsg-6 [1010 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf fasttree armhf 2.1.9-2 [156 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf fonts-lmodern all 2.004.5-3 [4540 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf fonts-lyx all 2.2.3-1 [197 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf libavahi-common-data armhf 0.6.32-2 [118 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf libavahi-common3 armhf 0.6.32-2 [48.6 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf libavahi-client3 armhf 0.6.32-2 [51.3 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf libcups2 armhf 2.2.4-3 [278 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf libcupsimage2 armhf 2.2.4-3 [123 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf libijs-0.35 armhf 0.35-12 [16.0 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf libjbig2dec0 armhf 0.13-4.1 [52.6 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf liblcms2-2 armhf 2.8-4 [118 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf libopenjp2-7 armhf 2.1.2-1.1 [108 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf libgs9-common all 9.21~dfsg-1 [5164 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf libgs9 armhf 9.21~dfsg-1 [1807 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf ghostscript armhf 9.21~dfsg-1 [97.0 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf hicolor-icon-theme all 0.15-1 [9550 B]
Get:140 http://172.17.0.1/private buster-staging/main armhf shared-mime-info armhf 1.8-1 [727 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf libgdk-pixbuf2.0-common all 2.36.5-2 [310 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf libgdk-pixbuf2.0-0 armhf 2.36.5-2 [152 kB]
Get:143 http://172.17.0.1/private buster-staging/main armhf gtk-update-icon-cache armhf 3.22.16-1+rpi1 [75.8 kB]
Get:144 http://172.17.0.1/private buster-staging/main armhf libpixman-1-0 armhf 0.34.0-1 [451 kB]
Get:145 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.12-1 [104 kB]
Get:146 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.12-1 [95.9 kB]
Get:147 http://172.17.0.1/private buster-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:148 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.14.10-1 [692 kB]
Get:149 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.26-3 [166 kB]
Get:150 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.10-5 [33.0 kB]
Get:151 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.26-3 [49.6 kB]
Get:152 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.40.6-1 [166 kB]
Get:153 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.10-2 [71.8 kB]
Get:154 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.4.2-1 [640 kB]
Get:155 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.40.6-1 [63.2 kB]
Get:156 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.40.6-1 [52.3 kB]
Get:157 http://172.17.0.1/private buster-staging/main armhf librsvg2-2 armhf 2.40.18-1 [268 kB]
Get:158 http://172.17.0.1/private buster-staging/main armhf librsvg2-common armhf 2.40.18-1 [195 kB]
Get:159 http://172.17.0.1/private buster-staging/main armhf gnome-icon-theme all 3.12.0-2 [9890 kB]
Get:160 http://172.17.0.1/private buster-staging/main armhf gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.3 [3126 kB]
Get:161 http://172.17.0.1/private buster-staging/main armhf libnetpbm10 armhf 2:10.0-15.3 [74.4 kB]
Get:162 http://172.17.0.1/private buster-staging/main armhf netpbm armhf 2:10.0-15.3 [888 kB]
Get:163 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:164 http://172.17.0.1/private buster-staging/main armhf libkpathsea6 armhf 2017.20170613.44572-3 [151 kB]
Get:165 http://172.17.0.1/private buster-staging/main armhf libptexenc1 armhf 2017.20170613.44572-3 [55.8 kB]
Get:166 http://172.17.0.1/private buster-staging/main armhf libsynctex1 armhf 2017.20170613.44572-3 [58.4 kB]
Get:167 http://172.17.0.1/private buster-staging/main armhf libtexlua52 armhf 2017.20170613.44572-3 [85.7 kB]
Get:168 http://172.17.0.1/private buster-staging/main armhf libtexluajit2 armhf 2017.20170613.44572-3 [201 kB]
Get:169 http://172.17.0.1/private buster-staging/main armhf t1utils armhf 1.40-2 [52.0 kB]
Get:170 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-icu0 armhf 1.4.2-1 [465 kB]
Get:171 http://172.17.0.1/private buster-staging/main armhf x11-common all 1:7.7+19 [251 kB]
Get:172 http://172.17.0.1/private buster-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:173 http://172.17.0.1/private buster-staging/main armhf libnspr4 armhf 2:4.15-1 [95.5 kB]
Get:174 http://172.17.0.1/private buster-staging/main armhf libnss3 armhf 2:3.31-1 [944 kB]
Get:175 http://172.17.0.1/private buster-staging/main armhf libpoppler64 armhf 0.48.0-2 [1163 kB]
Get:176 http://172.17.0.1/private buster-staging/main armhf libpotrace0 armhf 1.14-2 [23.1 kB]
Get:177 http://172.17.0.1/private buster-staging/main armhf libsm6 armhf 2:1.2.2-1+b1 [31.2 kB]
Get:178 http://172.17.0.1/private buster-staging/main armhf libxt6 armhf 1:1.1.5-1 [155 kB]
Get:179 http://172.17.0.1/private buster-staging/main armhf libxmu6 armhf 2:1.1.2-2 [52.0 kB]
Get:180 http://172.17.0.1/private buster-staging/main armhf libxaw7 armhf 2:1.0.13-1 [164 kB]
Get:181 http://172.17.0.1/private buster-staging/main armhf libxi6 armhf 2:1.7.9-1 [77.8 kB]
Get:182 http://172.17.0.1/private buster-staging/main armhf libzzip-0-13 armhf 0.13.62-3.1 [51.5 kB]
Get:183 http://172.17.0.1/private buster-staging/main armhf texlive-binaries armhf 2017.20170613.44572-3 [5846 kB]
Get:184 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.1-1 [71.1 kB]
Get:185 http://172.17.0.1/private buster-staging/main armhf texlive-base all 2017.20170724-1 [18.7 MB]
Get:186 http://172.17.0.1/private buster-staging/main armhf ocaml-base-nox armhf 4.02.3-10+rpi1 [520 kB]
Get:187 http://172.17.0.1/private buster-staging/main armhf hevea all 2.29-2 [899 kB]
Get:188 http://172.17.0.1/private buster-staging/main armhf libatk1.0-data all 2.24.0-1 [174 kB]
Get:189 http://172.17.0.1/private buster-staging/main armhf libatk1.0-0 armhf 2.24.0-1 [70.5 kB]
Get:190 http://172.17.0.1/private buster-staging/main armhf libblas-common armhf 3.7.1-1 [14.6 kB]
Get:191 http://172.17.0.1/private buster-staging/main armhf libgfortran3 armhf 6.4.0-1+rpi1 [166 kB]
Get:192 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.7.1-1 [108 kB]
Get:193 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.2-2 [121 kB]
Get:194 http://172.17.0.1/private buster-staging/main armhf libgtk2.0-common all 2.24.31-2 [2693 kB]
Get:195 http://172.17.0.1/private buster-staging/main armhf libxcomposite1 armhf 1:0.4.4-2 [16.1 kB]
Get:196 http://172.17.0.1/private buster-staging/main armhf libxfixes3 armhf 1:5.0.3-1 [20.6 kB]
Get:197 http://172.17.0.1/private buster-staging/main armhf libxcursor1 armhf 1:1.1.14-1+b1 [31.9 kB]
Get:198 http://172.17.0.1/private buster-staging/main armhf libxdamage1 armhf 1:1.1.4-2+b1 [14.1 kB]
Get:199 http://172.17.0.1/private buster-staging/main armhf libxinerama1 armhf 2:1.1.3-1+b1 [16.4 kB]
Get:200 http://172.17.0.1/private buster-staging/main armhf libxrandr2 armhf 2:1.5.1-1 [34.5 kB]
Get:201 http://172.17.0.1/private buster-staging/main armhf libgtk2.0-0 armhf 2.24.31-2 [1505 kB]
Get:202 http://172.17.0.1/private buster-staging/main armhf libjs-jquery all 3.1.1-2 [154 kB]
Get:203 http://172.17.0.1/private buster-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-4 [232 kB]
Get:204 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.7.1-1 [1503 kB]
Get:205 http://172.17.0.1/private buster-staging/main armhf libltdl7 armhf 2.4.6-2 [386 kB]
Get:206 http://172.17.0.1/private buster-staging/main armhf libnl-3-200 armhf 3.2.27-2 [53.7 kB]
Get:207 http://172.17.0.1/private buster-staging/main armhf libnl-route-3-200 armhf 3.2.27-2 [113 kB]
Get:208 http://172.17.0.1/private buster-staging/main armhf libpciaccess0 armhf 0.13.4-1 [47.4 kB]
Get:209 http://172.17.0.1/private buster-staging/main armhf libpython2.7 armhf 2.7.13-2 [916 kB]
Get:210 http://172.17.0.1/private buster-staging/main armhf libpython2.7-dev armhf 2.7.13-2 [27.6 MB]
Get:211 http://172.17.0.1/private buster-staging/main armhf libpython-dev armhf 2.7.13-2 [20.0 kB]
Get:212 http://172.17.0.1/private buster-staging/main armhf libpython-all-dev armhf 2.7.13-2 [958 B]
Get:213 http://172.17.0.1/private buster-staging/main armhf libpython3.5 armhf 3.5.4~rc1-1 [1174 kB]
Get:214 http://172.17.0.1/private buster-staging/main armhf libpython3.5-dev armhf 3.5.4~rc1-1 [37.0 MB]
Get:215 http://172.17.0.1/private buster-staging/main armhf libpython3-dev armhf 3.5.3-3 [18.9 kB]
Get:216 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.2-1 [2026 kB]
Get:217 http://172.17.0.1/private buster-staging/main armhf libpython3.6 armhf 3.6.2-1 [1212 kB]
Get:218 http://172.17.0.1/private buster-staging/main armhf libpython3.6-dev armhf 3.6.2-1 [2222 kB]
Get:219 http://172.17.0.1/private buster-staging/main armhf libpython3-all-dev armhf 3.5.3-3 [970 B]
Get:220 http://172.17.0.1/private buster-staging/main armhf libwebpdemux2 armhf 0.6.0-3 [80.7 kB]
Get:221 http://172.17.0.1/private buster-staging/main armhf libwebpmux3 armhf 0.6.0-3 [88.2 kB]
Get:222 http://172.17.0.1/private buster-staging/main armhf mafft armhf 7.307-1 [593 kB]
Get:223 http://172.17.0.1/private buster-staging/main armhf muscle armhf 1:3.8.31+dfsg-2 [133 kB]
Get:224 http://172.17.0.1/private buster-staging/main armhf ncbi-data all 6.1.20170106-2 [3692 kB]
Get:225 http://172.17.0.1/private buster-staging/main armhf ncbi-blast+ armhf 2.6.0-1 [7990 kB]
Get:226 http://172.17.0.1/private buster-staging/main armhf phylip armhf 1:3.696+dfsg-5 [703 kB]
Get:227 http://172.17.0.1/private buster-staging/main armhf libhwloc5 armhf 1.11.5-1+rpi1 [83.2 kB]
Get:228 http://172.17.0.1/private buster-staging/main armhf libibverbs1 armhf 1.2.1-2 [35.4 kB]
Get:229 http://172.17.0.1/private buster-staging/main armhf ocl-icd-libopencl1 armhf 2.2.11-1 [35.5 kB]
Get:230 http://172.17.0.1/private buster-staging/main armhf libhwloc-plugins armhf 1.11.5-1+rpi1 [14.9 kB]
Get:231 http://172.17.0.1/private buster-staging/main armhf libopenmpi2 armhf 2.1.1-6+rpi1 [1750 kB]
Get:232 http://172.17.0.1/private buster-staging/main armhf openmpi-common all 2.1.1-6+rpi1 [154 kB]
Get:233 http://172.17.0.1/private buster-staging/main armhf openmpi-bin armhf 2.1.1-6+rpi1 [187 kB]
Get:234 http://172.17.0.1/private buster-staging/main armhf phyml armhf 3:3.3.20170530+dfsg-2 [1390 kB]
Get:235 http://172.17.0.1/private buster-staging/main armhf prank armhf 0.0.150803-2 [324 kB]
Get:236 http://172.17.0.1/private buster-staging/main armhf preview-latex-style all 11.90-2 [200 kB]
Get:237 http://172.17.0.1/private buster-staging/main armhf probcons armhf 1.12-11 [94.8 kB]
Get:238 http://172.17.0.1/private buster-staging/main armhf python-all armhf 2.7.13-2 [940 B]
Get:239 http://172.17.0.1/private buster-staging/main armhf python2.7-dev armhf 2.7.13-2 [276 kB]
Get:240 http://172.17.0.1/private buster-staging/main armhf python-dev armhf 2.7.13-2 [1130 B]
Get:241 http://172.17.0.1/private buster-staging/main armhf python-all-dev armhf 2.7.13-2 [962 B]
Get:242 http://172.17.0.1/private buster-staging/main armhf python-six all 1.10.0-4 [14.4 kB]
Get:243 http://172.17.0.1/private buster-staging/main armhf python-cycler all 0.10.0-1 [7448 B]
Get:244 http://172.17.0.1/private buster-staging/main armhf python-dateutil all 2.6.0-1 [59.6 kB]
Get:245 http://172.17.0.1/private buster-staging/main armhf python-decorator all 4.1.1-1 [13.5 kB]
Get:246 http://172.17.0.1/private buster-staging/main armhf python-functools32 all 3.2.3.2-3 [11.0 kB]
Get:247 http://172.17.0.1/private buster-staging/main armhf python-isodate all 0.5.4-1 [23.6 kB]
Get:248 http://172.17.0.1/private buster-staging/main armhf python-matplotlib-data all 2.0.0+dfsg1-2 [4414 kB]
Get:249 http://172.17.0.1/private buster-staging/main armhf python-pyparsing all 2.1.10+dfsg1-1 [88.5 kB]
Get:250 http://172.17.0.1/private buster-staging/main armhf python-tz all 2017.2-2 [33.9 kB]
Get:251 http://172.17.0.1/private buster-staging/main armhf python-numpy armhf 1:1.12.1-3 [1694 kB]
Get:252 http://172.17.0.1/private buster-staging/main armhf python-subprocess32 armhf 3.2.7-2 [28.2 kB]
Get:253 http://172.17.0.1/private buster-staging/main armhf python-matplotlib armhf 2.0.0+dfsg1-2 [1531 kB]
Get:254 http://172.17.0.1/private buster-staging/main armhf python-mysqldb armhf 1.3.10-1 [56.0 kB]
Get:255 http://172.17.0.1/private buster-staging/main armhf python-olefile all 0.44-1 [37.3 kB]
Get:256 http://172.17.0.1/private buster-staging/main armhf python-pil armhf 4.1.1-3+b1 [330 kB]
Get:257 http://172.17.0.1/private buster-staging/main armhf python-pkg-resources all 36.0.1-1 [168 kB]
Get:258 http://172.17.0.1/private buster-staging/main armhf python-psycopg2 armhf 2.7.1-1 [160 kB]
Get:259 http://172.17.0.1/private buster-staging/main armhf python-rdflib all 4.2.1-2 [253 kB]
Get:260 http://172.17.0.1/private buster-staging/main armhf python-renderpm armhf 3.4.0-3 [43.4 kB]
Get:261 http://172.17.0.1/private buster-staging/main armhf python-reportlab-accel armhf 3.4.0-3 [36.0 kB]
Get:262 http://172.17.0.1/private buster-staging/main armhf python-reportlab all 3.4.0-3 [491 kB]
Get:263 http://172.17.0.1/private buster-staging/main armhf python-setuptools all 36.0.1-1 [301 kB]
Get:264 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.2-1 [210 kB]
Get:265 http://172.17.0.1/private buster-staging/main armhf python3-all armhf 3.5.3-3 [944 B]
Get:266 http://172.17.0.1/private buster-staging/main armhf python3.5-dev armhf 3.5.4~rc1-1 [413 kB]
Get:267 http://172.17.0.1/private buster-staging/main armhf python3-dev armhf 3.5.3-3 [1158 B]
Get:268 http://172.17.0.1/private buster-staging/main armhf python3.6-dev armhf 3.6.2-1 [501 kB]
Get:269 http://172.17.0.1/private buster-staging/main armhf python3-all-dev armhf 3.5.3-3 [972 B]
Get:270 http://172.17.0.1/private buster-staging/main armhf python3-six all 1.10.0-4 [14.5 kB]
Get:271 http://172.17.0.1/private buster-staging/main armhf python3-cycler all 0.10.0-1 [7556 B]
Get:272 http://172.17.0.1/private buster-staging/main armhf python3-dateutil all 2.6.0-1 [51.9 kB]
Get:273 http://172.17.0.1/private buster-staging/main armhf python3-decorator all 4.1.1-1 [13.6 kB]
Get:274 http://172.17.0.1/private buster-staging/main armhf python3-isodate all 0.5.4-1 [23.7 kB]
Get:275 http://172.17.0.1/private buster-staging/main armhf python3-pyparsing all 2.1.10+dfsg1-1 [88.6 kB]
Get:276 http://172.17.0.1/private buster-staging/main armhf python3-tz all 2017.2-2 [27.3 kB]
Get:277 http://172.17.0.1/private buster-staging/main armhf python3-numpy armhf 1:1.12.1-3 [1693 kB]
Get:278 http://172.17.0.1/private buster-staging/main armhf python3-matplotlib armhf 2.0.0+dfsg1-2 [1525 kB]
Get:279 http://172.17.0.1/private buster-staging/main armhf python3-mysqldb armhf 1.3.10-1 [52.9 kB]
Get:280 http://172.17.0.1/private buster-staging/main armhf python3-olefile all 0.44-1 [37.3 kB]
Get:281 http://172.17.0.1/private buster-staging/main armhf python3-pil armhf 4.1.1-3+b1 [332 kB]
Get:282 http://172.17.0.1/private buster-staging/main armhf python3-pkg-resources all 36.0.1-1 [139 kB]
Get:283 http://172.17.0.1/private buster-staging/main armhf python3-psycopg2 armhf 2.7.1-1 [160 kB]
Get:284 http://172.17.0.1/private buster-staging/main armhf python3-rdflib all 4.2.1-2 [252 kB]
Get:285 http://172.17.0.1/private buster-staging/main armhf python3-renderpm armhf 3.4.0-3 [43.6 kB]
Get:286 http://172.17.0.1/private buster-staging/main armhf python3-reportlab-accel armhf 3.4.0-3 [31.9 kB]
Get:287 http://172.17.0.1/private buster-staging/main armhf python3-reportlab all 3.4.0-3 [488 kB]
Get:288 http://172.17.0.1/private buster-staging/main armhf python3-setuptools all 36.0.1-1 [219 kB]
Get:289 http://172.17.0.1/private buster-staging/main armhf t-coffee armhf 11.00.8cbe486-5 [1684 kB]
Get:290 http://172.17.0.1/private buster-staging/main armhf texlive-fonts-recommended all 2017.20170724-1 [5309 kB]
Get:291 http://172.17.0.1/private buster-staging/main armhf texlive-latex-base all 2017.20170724-1 [975 kB]
Get:292 http://172.17.0.1/private buster-staging/main armhf texlive-latex-recommended all 2017.20170724-1 [14.8 MB]
Get:293 http://172.17.0.1/private buster-staging/main armhf texlive-pictures all 2017.20170724-1 [3990 kB]
Get:294 http://172.17.0.1/private buster-staging/main armhf texlive-latex-extra all 2017.20170724-1 [10.4 MB]
Get:295 http://172.17.0.1/private buster-staging/main armhf wise-data all 2.4.1-19 [108 kB]
Get:296 http://172.17.0.1/private buster-staging/main armhf wise armhf 2.4.1-19 [760 kB]
Get:297 http://172.17.0.1/private buster-staging/main armhf python-scipy armhf 0.18.1-2 [8094 kB]
Get:298 http://172.17.0.1/private buster-staging/main armhf python3-scipy armhf 0.18.1-2 [7698 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Moving old data out of the way
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update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
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Creating config file /etc/papersize with new version
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Setting up libcairo2:armhf (1.14.10-1) ...
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update-alternatives: using /usr/share/icons/gnome/scalable/places/debian-swirl.svg to provide /usr/share/icons/gnome/scalable/places/start-here.svg (start-here.svg) in auto mode
Setting up libgtk2.0-0:armhf (2.24.31-2) ...
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Setting up python3-all (3.5.3-3) ...
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Setting up python3-setuptools (36.0.1-1) ...
Setting up dh-python (2.20170125) ...
Setting up python3-decorator (4.1.1-1) ...
Setting up python3-tz (2017.2-2) ...
Setting up python3-dateutil (2.6.0-1) ...
Setting up python3-renderpm:armhf (3.4.0-3) ...
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Setting up python3-matplotlib (2.0.0+dfsg1-2) ...
Setting up python3-rdflib (4.2.1-2) ...
Setting up sbuild-build-depends-python-biopython-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-12) ...
Processing triggers for systemd (233-10) ...
Processing triggers for tex-common (6.07) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
	This may take some time... done.
Processing triggers for libgdk-pixbuf2.0-0:armhf (2.36.5-2) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.8.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.28-6 dpkg-dev_1.18.24 g++-6_6.4.0-1+rpi1 gcc-6_6.4.0-1+rpi1 libc6-dev_2.24-12 libstdc++-6-dev_6.4.0-1+rpi1 libstdc++6_7.1.0-10+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
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libxrender1_1:0.9.10-1 libxt6_1:1.1.5-1 libzzip-0-13_0.13.62-3.1 linux-base_4.5 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.4-4.1 lsb-base_9.20161125+rpi1 m4_1.4.18-1 mafft_7.307-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 mawk_1.3.3-17 mime-support_3.60 mount_2.29.2-2+rpi1 mountall_2.54 multiarch-support_2.24-12 muscle_1:3.8.31+dfsg-2 mysql-common_5.8+1.0.3 ncbi-blast+_2.6.0-1 ncbi-data_6.1.20170106-2 ncurses-base_6.0+20170715-2 ncurses-bin_6.0+20170715-2 netpbm_2:10.0-15.3 ocaml-base-nox_4.02.3-10+rpi1 ocl-icd-libopencl1_2.2.11-1 openmpi-bin_2.1.1-6+rpi1 openmpi-common_2.1.1-6+rpi1 passwd_1:4.4-4.1 patch_2.7.5-1 perl_5.24.1-4 perl-base_5.24.1-4 perl-modules-5.24_5.24.1-7 phylip_1:3.696+dfsg-5 phyml_3:3.3.20170530+dfsg-2 pinentry-curses_1.0.0-2 plymouth_0.9.2-4 po-debconf_1.0.20 poppler-data_0.4.7-8 prank_0.0.150803-2 preview-latex-style_11.90-2 probcons_1.12-11 procps_2:3.3.12-3 python_2.7.13-2 python-all_2.7.13-2 python-all-dev_2.7.13-2 python-cycler_0.10.0-1 python-dateutil_2.6.0-1 python-decorator_4.1.1-1 python-dev_2.7.13-2 python-functools32_3.2.3.2-3 python-isodate_0.5.4-1 python-matplotlib_2.0.0+dfsg1-2 python-matplotlib-data_2.0.0+dfsg1-2 python-minimal_2.7.13-2 python-mysqldb_1.3.10-1 python-numpy_1:1.12.1-3 python-olefile_0.44-1 python-pil_4.1.1-3+b1 python-pkg-resources_36.0.1-1 python-psycopg2_2.7.1-1 python-pyparsing_2.1.10+dfsg1-1 python-rdflib_4.2.1-2 python-renderpm_3.4.0-3 python-reportlab_3.4.0-3 python-reportlab-accel_3.4.0-3 python-scipy_0.18.1-2 python-setuptools_36.0.1-1 python-six_1.10.0-4 python-subprocess32_3.2.7-2 python-tz_2017.2-2 python2.7_2.7.13-2 python2.7-dev_2.7.13-2 python2.7-minimal_2.7.13-2 python3_3.5.3-3 python3-all_3.5.3-3 python3-all-dev_3.5.3-3 python3-cycler_0.10.0-1 python3-dateutil_2.6.0-1 python3-decorator_4.1.1-1 python3-dev_3.5.3-3 python3-isodate_0.5.4-1 python3-matplotlib_2.0.0+dfsg1-2 python3-minimal_3.5.3-3 python3-mysqldb_1.3.10-1 python3-numpy_1:1.12.1-3 python3-olefile_0.44-1 python3-pil_4.1.1-3+b1 python3-pkg-resources_36.0.1-1 python3-psycopg2_2.7.1-1 python3-pyparsing_2.1.10+dfsg1-1 python3-rdflib_4.2.1-2 python3-renderpm_3.4.0-3 python3-reportlab_3.4.0-3 python3-reportlab-accel_3.4.0-3 python3-scipy_0.18.1-2 python3-setuptools_36.0.1-1 python3-six_1.10.0-4 python3-tz_2017.2-2 python3.5_3.5.4~rc1-1 python3.5-dev_3.5.4~rc1-1 python3.5-minimal_3.5.4~rc1-1 python3.6_3.6.2-1 python3.6-dev_3.6.2-1 python3.6-minimal_3.6.2-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-biopython-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9+nmu1 shared-mime-info_1.8-1 systemd_233-10 sysvinit-utils_2.88dsf-59.9 t-coffee_11.00.8cbe486-5 t1utils_1.40-2 tar_1.29b-2 tex-common_6.07 texlive-base_2017.20170724-1 texlive-binaries_2017.20170613.44572-3 texlive-fonts-recommended_2017.20170724-1 texlive-latex-base_2017.20170724-1 texlive-latex-extra_2017.20170724-1 texlive-latex-recommended_2017.20170724-1 texlive-pictures_2017.20170724-1 ttf-bitstream-vera_1.10-8 tzdata_2017b-2 ucf_3.0036 udev_233-10 util-linux_2.29.2-1 wise_2.4.1-19 wise-data_2.4.1-19 x11-common_1:7.7+19 xdg-utils_1.1.1-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Jul 31 17:15:21 2017 UTC
gpgv:                using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-biopython_1.70+dfsg-2.dsc
dpkg-source: info: extracting python-biopython in /<<BUILDDIR>>/python-biopython-1.70+dfsg
dpkg-source: info: unpacking python-biopython_1.70+dfsg.orig.tar.xz
dpkg-source: info: unpacking python-biopython_1.70+dfsg-2.debian.tar.xz
dpkg-source: info: applying remove_mathml-qname.patch
dpkg-source: info: applying privacy_breach.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-34156d21-9235-443c-a1f1-ae25af4b4688
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package python-biopython
dpkg-buildpackage: info: source version 1.70+dfsg-2
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build python-biopython-1.70+dfsg
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean --with python2,python3 --buildsystem=pybuild
   dh_testdir -O--buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/python-biopython-1.70+dfsg'
dh_auto_clean
	pybuild --clean -i python{version} -p 2.7
I: pybuild base:184: python2.7 setup.py clean 
running clean
removing '/<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
	pybuild --clean -i python{version} -p "3.6 3.5"
I: pybuild base:184: python3.6 setup.py clean 
running clean
removing '/<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_3.6/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.6' does not exist -- can't clean it
I: pybuild base:184: python3.5 setup.py clean 
running clean
removing '/<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_3.5/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.5' does not exist -- can't clean it
	rm -rf .pybuild/
	find . -name \*.pyc -exec rm {} \;
cd Doc && make distclean
make[2]: Entering directory '/<<BUILDDIR>>/python-biopython-1.70+dfsg/Doc'
make -C install
make[3]: Entering directory '/<<BUILDDIR>>/python-biopython-1.70+dfsg/Doc/install'
pdflatex Installation.tex
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 restricted \write18 enabled.
entering extended mode
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>
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pdflatex Installation.tex
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex)
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>
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pdflatex Installation.tex
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex)
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(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fo
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10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb
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fi
rm -rf debian/tmp_tests
make[1]: Leaving directory '/<<BUILDDIR>>/python-biopython-1.70+dfsg'
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
	rm -f debian/debhelper-build-stamp
	rm -rf debian/.debhelper/
	rm -f -- debian/python-biopython.substvars debian/python3-biopython.substvars debian/python-biopython-doc.substvars debian/python-biopython-sql.substvars debian/python3-biopython-sql.substvars debian/files
	rm -fr -- debian/python-biopython/ debian/python3-biopython/ debian/python-biopython-doc/ debian/python-biopython-sql/ debian/python3-biopython-sql/
	find .  \( \( \
		\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \
	        \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
		\) -exec rm -f {} + \) -o \
		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 debian/rules build-arch
dh build-arch --with python2,python3 --buildsystem=pybuild
   dh_testdir -a -O--buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
	pybuild --configure -i python{version} -p 2.7
I: pybuild base:184: python2.7 setup.py config 
running config
	pybuild --configure -i python{version} -p "3.6 3.5"
I: pybuild base:184: python3.6 setup.py config 
running config
I: pybuild base:184: python3.5 setup.py config 
running config
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/python-biopython-1.70+dfsg'
dh_auto_build
	pybuild --build -i python{version} -p 2.7
I: pybuild base:184: /usr/bin/python setup.py build 
running build
running build_py
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/DocSQL.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/File.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/Index.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/LogisticRegression.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/MarkovModel.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/MaxEntropy.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/NaiveBayes.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/ParserSupport.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/Seq.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/SeqFeature.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/SeqRecord.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/_utils.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/bgzf.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/kNN.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/pairwise2.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/triefind.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align
copying Bio/Align/AlignInfo.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align
copying Bio/Align/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications
copying Bio/Align/Applications/_ClustalOmega.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications
copying Bio/Align/Applications/_Clustalw.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications
copying Bio/Align/Applications/_Dialign.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications
copying Bio/Align/Applications/_MSAProbs.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications
copying Bio/Align/Applications/_Mafft.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications
copying Bio/Align/Applications/_Muscle.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications
copying Bio/Align/Applications/_Prank.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications
copying Bio/Align/Applications/_Probcons.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications
copying Bio/Align/Applications/_TCoffee.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications
copying Bio/Align/Applications/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO
copying Bio/AlignIO/ClustalIO.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO
copying Bio/AlignIO/EmbossIO.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO
copying Bio/AlignIO/FastaIO.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO
copying Bio/AlignIO/Interfaces.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO
copying Bio/AlignIO/MafIO.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO
copying Bio/AlignIO/MauveIO.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO
copying Bio/AlignIO/NexusIO.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO
copying Bio/AlignIO/PhylipIO.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO
copying Bio/AlignIO/StockholmIO.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO
copying Bio/AlignIO/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Alphabet
copying Bio/Alphabet/IUPAC.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Alphabet
copying Bio/Alphabet/Reduced.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Alphabet
copying Bio/Alphabet/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Alphabet
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Application
copying Bio/Application/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Application
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast
copying Bio/Blast/Applications.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast
copying Bio/Blast/NCBIStandalone.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast
copying Bio/Blast/NCBIWWW.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast
copying Bio/Blast/NCBIXML.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast
copying Bio/Blast/ParseBlastTable.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast
copying Bio/Blast/Record.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast
copying Bio/Blast/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/CAPS
copying Bio/CAPS/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/CAPS
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/codonalign
copying Bio/codonalign/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/codonalign
copying Bio/codonalign/chisq.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/codonalign
copying Bio/codonalign/codonalignment.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/codonalign
copying Bio/codonalign/codonalphabet.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/codonalign
copying Bio/codonalign/codonseq.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/codonalign
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Compass
copying Bio/Compass/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Compass
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Crystal
copying Bio/Crystal/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Crystal
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Data
copying Bio/Data/CodonTable.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Data
copying Bio/Data/IUPACData.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Data
copying Bio/Data/SCOPData.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Data
copying Bio/Data/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Data
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Emboss
copying Bio/Emboss/Applications.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Emboss
copying Bio/Emboss/Primer3.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Emboss
copying Bio/Emboss/PrimerSearch.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Emboss
copying Bio/Emboss/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Emboss
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez
copying Bio/Entrez/Parser.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez
copying Bio/Entrez/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/ExPASy
copying Bio/ExPASy/Enzyme.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/ExPASy
copying Bio/ExPASy/Prodoc.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/ExPASy
copying Bio/ExPASy/Prosite.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/ExPASy
copying Bio/ExPASy/ScanProsite.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/ExPASy
copying Bio/ExPASy/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/ExPASy
copying Bio/ExPASy/cellosaurus.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/ExPASy
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/FSSP
copying Bio/FSSP/FSSPTools.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/FSSP
copying Bio/FSSP/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/FSSP
copying Bio/FSSP/fssp_rec.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/FSSP
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA
copying Bio/GA/Evolver.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA
copying Bio/GA/Organism.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA
copying Bio/GA/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Crossover
copying Bio/GA/Crossover/General.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Crossover
copying Bio/GA/Crossover/GeneralPoint.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Crossover
copying Bio/GA/Crossover/Point.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Crossover
copying Bio/GA/Crossover/TwoPoint.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Crossover
copying Bio/GA/Crossover/Uniform.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Crossover
copying Bio/GA/Crossover/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Crossover
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Mutation
copying Bio/GA/Mutation/General.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Mutation
copying Bio/GA/Mutation/Simple.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Mutation
copying Bio/GA/Mutation/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Mutation
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Repair
copying Bio/GA/Repair/Stabilizing.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Repair
copying Bio/GA/Repair/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Repair
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Selection
copying Bio/GA/Selection/Abstract.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Selection
copying Bio/GA/Selection/Diversity.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Selection
copying Bio/GA/Selection/RouletteWheel.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Selection
copying Bio/GA/Selection/Tournament.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Selection
copying Bio/GA/Selection/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Selection
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GenBank
copying Bio/GenBank/Record.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GenBank
copying Bio/GenBank/Scanner.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GenBank
copying Bio/GenBank/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GenBank
copying Bio/GenBank/utils.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GenBank
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Geo
copying Bio/Geo/Record.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Geo
copying Bio/Geo/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Geo
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics
copying Bio/Graphics/BasicChromosome.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics
copying Bio/Graphics/ColorSpiral.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics
copying Bio/Graphics/Comparative.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics
copying Bio/Graphics/DisplayRepresentation.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics
copying Bio/Graphics/Distribution.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics
copying Bio/Graphics/KGML_vis.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics
copying Bio/Graphics/__init__.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics
creating /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_Colors.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_Feature.py -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram
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copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
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copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
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copying Bio/Entrez/DTDs/archivecustom-models.ent -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/articlemeta.ent -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/backmatter.ent -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/chars.ent -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/common.ent -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/default-classes.ent -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/default-mixes.ent -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
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copying Bio/Entrez/DTDs/format.ent -> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
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running build_ext
building 'Bio.cpairwise2' extension
creating build
creating build/temp.linux-armhf-2.7
creating build/temp.linux-armhf-2.7/Bio
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biopython-1.70+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/cpairwise2module.c -o build/temp.linux-armhf-2.7/Bio/cpairwise2module.o
In file included from /usr/include/python2.7/Python.h:100:0,
                 from Bio/cpairwise2module.c:14:
Bio/cpairwise2module.c: In function 'cpairwise2__make_score_matrix_fast':
/usr/include/python2.7/listobject.h:62:58: warning: 'py_trace_row' may be used uninitialized in this function [-Wmaybe-uninitialized]
 #define PyList_SET_ITEM(op, i, v) (((PyListObject *)(op))->ob_item[i] = (v))
                                                          ^~
Bio/cpairwise2module.c:343:34: note: 'py_trace_row' was declared here
         PyObject *py_score_row, *py_trace_row;
                                  ^~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-9xgeTe/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biopython-1.70+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/Bio/cpairwise2module.o -o /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/cpairwise2.so
building 'Bio.trie' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biopython-1.70+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python2.7 -c Bio/triemodule.c -o build/temp.linux-armhf-2.7/Bio/triemodule.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biopython-1.70+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python2.7 -c Bio/trie.c -o build/temp.linux-armhf-2.7/Bio/trie.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-9xgeTe/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biopython-1.70+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/Bio/triemodule.o build/temp.linux-armhf-2.7/Bio/trie.o -o /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/trie.so
building 'Bio.Nexus.cnexus' extension
creating build/temp.linux-armhf-2.7/Bio/Nexus
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biopython-1.70+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/Nexus/cnexus.c -o build/temp.linux-armhf-2.7/Bio/Nexus/cnexus.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-9xgeTe/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biopython-1.70+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/Bio/Nexus/cnexus.o -o /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Nexus/cnexus.so
building 'Bio.Cluster.cluster' extension
creating build/temp.linux-armhf-2.7/Bio/Cluster
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biopython-1.70+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/Cluster/clustermodule.c -o build/temp.linux-armhf-2.7/Bio/Cluster/clustermodule.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biopython-1.70+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/Cluster/cluster.c -o build/temp.linux-armhf-2.7/Bio/Cluster/cluster.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-9xgeTe/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biopython-1.70+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/Bio/Cluster/clustermodule.o build/temp.linux-armhf-2.7/Bio/Cluster/cluster.o -o /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Cluster/cluster.so
building 'Bio.KDTree._CKDTree' extension
creating build/temp.linux-armhf-2.7/Bio/KDTree
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biopython-1.70+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/KDTree/KDTree.c -o build/temp.linux-armhf-2.7/Bio/KDTree/KDTree.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biopython-1.70+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/KDTree/KDTreemodule.c -o build/temp.linux-armhf-2.7/Bio/KDTree/KDTreemodule.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-9xgeTe/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biopython-1.70+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/Bio/KDTree/KDTree.o build/temp.linux-armhf-2.7/Bio/KDTree/KDTreemodule.o -o /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KDTree/_CKDTree.so
building 'Bio.motifs._pwm' extension
creating build/temp.linux-armhf-2.7/Bio/motifs
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biopython-1.70+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/motifs/_pwm.c -o build/temp.linux-armhf-2.7/Bio/motifs/_pwm.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-9xgeTe/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biopython-1.70+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/Bio/motifs/_pwm.o -o /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/_pwm.so
building 'Bio.PDB.QCPSuperimposer.qcprotmodule' extension
creating build/temp.linux-armhf-2.7/Bio/PDB
creating build/temp.linux-armhf-2.7/Bio/PDB/QCPSuperimposer
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biopython-1.70+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-armhf-2.7/Bio/PDB/QCPSuperimposer/qcprotmodule.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-9xgeTe/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biopython-1.70+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/Bio/PDB/QCPSuperimposer/qcprotmodule.o -o /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB/QCPSuperimposer/qcprotmodule.so
	pybuild --build -i python{version} -p "3.6 3.5"
I: pybuild base:184: /usr/bin/python3.6 setup.py build 
running build
running build_py
Missing required dependency NumPy (Numerical Python).

Unless running under Jython or IronPython, we require NumPy be installed
when compiling Biopython. See http://www.numpy.org for details.

E: pybuild pybuild:283: build: plugin distutils failed with: exit code=1: /usr/bin/python3.6 setup.py build 
dh_auto_build: pybuild --build -i python{version} -p 3.6 3.5 returned exit code 13
debian/rules:77: recipe for target 'override_dh_auto_build' failed
make[1]: *** [override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<BUILDDIR>>/python-biopython-1.70+dfsg'
debian/rules:56: recipe for target 'build-arch' failed
make: *** [build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2
--------------------------------------------------------------------------------
Build finished at 2017-08-06T08:11:11Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 0
Build-Time: 141
Distribution: buster-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 2521
Job: python-biopython_1.70+dfsg-2
Machine Architecture: armhf
Package: python-biopython
Package-Time: 2723
Source-Version: 1.70+dfsg-2
Space: 0
Status: failed
Version: 1.70+dfsg-2
--------------------------------------------------------------------------------
Finished at 2017-08-06T08:11:11Z
Build needed 00:00:00, 0k disc space

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