Build log for python-biopython (1.65+dfsg-3) on armhf

python-biopython → 1.65+dfsg-3 → armhf → 2015-10-27 12:05:48

sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bm-wb-01

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║ python-biopython 1.65+dfsg-3 (armhf)                       27 Oct 2015 10:46 ║
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Package: python-biopython
Version: 1.65+dfsg-3
Source Version: 1.65+dfsg-3
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/python-biopython-dH_KhH/python-biopython-1.65+dfsg' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/python-biopython-dH_KhH' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-b84b16a6-7029-493b-baab-b40788de09da' with '«CHROOT»'

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│ Update chroot                                                                │
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Get:1 http://172.17.0.1 stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 stretch-staging/main Sources [8407 kB]
Get:3 http://172.17.0.1 stretch-staging/main armhf Packages [10.3 MB]
Ign http://172.17.0.1 stretch-staging/main Translation-en
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Check APT
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Checking available source versions...

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Reading package lists...
Building dependency tree...
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NOTICE: 'python-biopython' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/python-biopython/trunk/
Need to get 8793 kB of source archives.
Get:1 http://172.17.0.1/private/ stretch-staging/main python-biopython 1.65+dfsg-3 (dsc) [2916 B]
Get:2 http://172.17.0.1/private/ stretch-staging/main python-biopython 1.65+dfsg-3 (tar) [8776 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main python-biopython 1.65+dfsg-3 (diff) [13.9 kB]
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-qFM2OP/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver)                         │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 18 not upgraded.
Need to get 0 B/768 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
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(Reading database ... 12000 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dpkg-dev (>= 1.16.1~), python-all-dev, python3-all-dev, python-numpy, python3-numpy, flex, python-reportlab, python3-reportlab, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, ncbi-blast+, phylip, phyml, prank, probcons, python-mysqldb, python3-mysqldb, python-matplotlib, python3-matplotlib, python-pil, python3-pil, python-rdflib (>= 4), python3-rdflib (>= 4), python-renderpm, python3-renderpm, python-psycopg2, python3-psycopg2, t-coffee, wise (>= 2.4.1-16)
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dpkg-dev (>= 1.16.1~), python-all-dev, python3-all-dev, python-numpy, python3-numpy, flex, python-reportlab, python3-reportlab, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, ncbi-blast+, phylip, phyml, prank, probcons, python-mysqldb, python3-mysqldb, python-matplotlib, python3-matplotlib, python-pil, python3-pil, python-rdflib (>= 4), python3-rdflib (>= 4), python-renderpm, python3-renderpm, python-psycopg2, python3-psycopg2, t-coffee, wise (>= 2.4.1-16)
dpkg-deb: building package 'sbuild-build-depends-python-biopython-dummy' in '/«BUILDDIR»/resolver-w0JhpF/apt_archive/sbuild-build-depends-python-biopython-dummy.deb'.
OK
Ign file: ./ InRelease
Get:1 file: ./ Release.gpg [299 B]
Get:2 file: ./ Release [2119 B]
Ign file: ./ Translation-en
Reading package lists...
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install python-biopython build dependencies (apt-based resolver)             │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
  bsdmainutils clustalo clustalw cpp-5 debhelper dh-python
  dh-strip-nondeterminism dialign dssp emboss emboss-data emboss-lib fasttree
  file flex fontconfig fontconfig-config fonts-dejavu-core fonts-lyx g++-5
  gcc-5 gcc-5-base gettext gettext-base groff-base gsfonts intltool-debian
  libarchive-zip-perl libargtable2-0 libart-2.0-2 libasan2 libatk1.0-0
  libatk1.0-data libatomic1 libavahi-client3 libavahi-common-data
  libavahi-common3 libblas-common libblas3 libboost-iostreams1.58.0
  libboost-program-options1.58.0 libboost-system1.58.0 libboost-thread1.58.0
  libcairo2 libcc1-0 libcroco3 libcups2 libdatrie1 libexpat1 libexpat1-dev
  libffi6 libfile-stripnondeterminism-perl libfl-dev libfontconfig1
  libfreetype6 libgcc-5-dev libgcc1 libgd3 libgdk-pixbuf2.0-0
  libgdk-pixbuf2.0-common libgfortran3 libglib2.0-0 libgnutls-deb0-28 libgomp1
  libgraphite2-3 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libharfbuzz0b
  libhmsbeagle1v5 libhogweed4 libhpdf-2.2.1 libicu55 libjbig0 libjpeg62-turbo
  libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3
  libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 libmagic1 libmpdec2
  libmysqlclient18 libnettle6 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0
  libpangoft2-1.0-0 libpipeline1 libpixman-1-0 libpq5 libpython-all-dev
  libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev
  libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev
  libpython3-stdlib libpython3.4 libpython3.4-dev libpython3.4-minimal
  libpython3.4-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal
  libpython3.5-stdlib libqhull6 libsasl2-2 libsasl2-modules-db libsigsegv2
  libsqlite3-0 libssl1.0.0 libstdc++-5-dev libstdc++6 libtasn1-6 libtcl8.6
  libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libubsan0
  libunistring0 libvpx2 libwebp5 libwebpdemux1 libwebpmux1 libx11-6
  libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1
  libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6
  libxinerama1 libxml2 libxpm4 libxrandr2 libxrender1 libxss1 m4 mafft man-db
  mime-support muscle mysql-common ncbi-blast+ ncbi-data phylip phyml
  po-debconf prank probcons python python-all python-all-dev python-cycler
  python-dateutil python-dev python-isodate python-matplotlib
  python-matplotlib-data python-minimal python-mysqldb python-numpy python-pil
  python-psycopg2 python-pyparsing python-rdflib python-renderpm
  python-reportlab python-reportlab-accel python-six python-tz python2.7
  python2.7-dev python2.7-minimal python3 python3-all python3-all-dev
  python3-cycler python3-dateutil python3-dev python3-isodate
  python3-matplotlib python3-minimal python3-mysqldb python3-numpy python3-pil
  python3-psycopg2 python3-pyparsing python3-rdflib python3-renderpm
  python3-reportlab python3-reportlab-accel python3-six python3-tz python3.4
  python3.4-dev python3.4-minimal python3.5 python3.5-dev python3.5-minimal
  shared-mime-info t-coffee ucf wise wise-data x11-common
Suggested packages:
  wamerican wordlist whois vacation clustalx seaview gcc-5-locales dh-make
  emboss-doc emboss-test embassy bison gcc-5-doc libstdc++6-5-dbg libgcc1-dbg
  libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg
  libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath-dbg
  gettext-doc autopoint libasprintf-dev libgettextpo-dev groff cups-common
  libgd-tools gnutls-bin krb5-doc krb5-user librsvg2-common gvfs
  libjs-jquery-ui-docs liblcms2-utils libstdc++-5-doc tcl8.6 tk8.6 less
  www-browser phylip-doc libmail-box-perl probcons-extra python-doc python-tk
  dvipng gir1.2-gtk-3.0 ghostscript inkscape ipython python-cairocffi
  python-configobj python-excelerator python-gobject python-gtk2
  python-matplotlib-doc python-nose python-qt4 python-scipy python-sip
  python-tornado python-traits python-wxgtk3.0 texlive-extra-utils
  texlive-latex-extra ttf-staypuft mysql-server-5.1 mysql-server
  python-egenix-mxdatetime python-mysqldb-dbg gfortran python-numpy-dbg
  python-numpy-doc python-pil-doc python-pil-dbg python-psycopg2-doc
  python-rdflib-doc python-rdflib-tools python-renderpm-dbg pdf-viewer
  python-egenix-mxtexttools python-reportlab-doc python2.7-doc binfmt-support
  python3-doc python3-tk python3-venv ipython3 python3-cairocffi python3-gi
  python3-gi-cairo python3-gobject python3-nose python3-pyqt4 python3-scipy
  python3-sip python3-tornado python3-mysqldb-dbg python3-numpy-dbg
  python3-pil-dbg python3-renderpm-dbg python3-egenix-mxtexttools
  python3.4-venv python3.4-doc python3.5-venv python3.5-doc boxshade
  t-coffee-examples fsa wise-doc
Recommended packages:
  primer3 curl wget lynx-cur libglib2.0-data xdg-user-dirs hicolor-icon-theme
  libgtk2.0-bin javascript-common krb5-locales libsasl2-modules xml-core
  blast2 libwww-perl lynx ruby libmail-sendmail-perl python-glade2
  python-imaging python-sparqlwrapper python-html5lib python3-sparqlwrapper
  python3-html5lib amap-align dialign-tx kalign libsoap-lite-perl
  libxml-simple-perl mustang poa proda tm-align
The following NEW packages will be installed:
  bsdmainutils clustalo clustalw debhelper dh-python dh-strip-nondeterminism
  dialign dssp emboss emboss-data emboss-lib fasttree file flex fontconfig
  fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base
  groff-base gsfonts intltool-debian libarchive-zip-perl libargtable2-0
  libart-2.0-2 libatk1.0-0 libatk1.0-data libavahi-client3
  libavahi-common-data libavahi-common3 libblas-common libblas3
  libboost-iostreams1.58.0 libboost-program-options1.58.0
  libboost-system1.58.0 libboost-thread1.58.0 libcairo2 libcroco3 libcups2
  libdatrie1 libexpat1 libexpat1-dev libffi6 libfile-stripnondeterminism-perl
  libfl-dev libfontconfig1 libfreetype6 libgd3 libgdk-pixbuf2.0-0
  libgdk-pixbuf2.0-common libgfortran3 libglib2.0-0 libgnutls-deb0-28
  libgraphite2-3 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libharfbuzz0b
  libhmsbeagle1v5 libhogweed4 libhpdf-2.2.1 libicu55 libjbig0 libjpeg62-turbo
  libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3
  libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 libmagic1 libmpdec2
  libmysqlclient18 libnettle6 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0
  libpangoft2-1.0-0 libpipeline1 libpixman-1-0 libpq5 libpython-all-dev
  libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev
  libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev
  libpython3-stdlib libpython3.4 libpython3.4-dev libpython3.4-minimal
  libpython3.4-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal
  libpython3.5-stdlib libqhull6 libsasl2-2 libsasl2-modules-db libsigsegv2
  libsqlite3-0 libssl1.0.0 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff5
  libtimedate-perl libtk8.6 libunistring0 libvpx2 libwebp5 libwebpdemux1
  libwebpmux1 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1
  libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2
  libxi6 libxinerama1 libxml2 libxpm4 libxrandr2 libxrender1 libxss1 m4 mafft
  man-db mime-support muscle mysql-common ncbi-blast+ ncbi-data phylip phyml
  po-debconf prank probcons python python-all python-all-dev python-cycler
  python-dateutil python-dev python-isodate python-matplotlib
  python-matplotlib-data python-minimal python-mysqldb python-numpy python-pil
  python-psycopg2 python-pyparsing python-rdflib python-renderpm
  python-reportlab python-reportlab-accel python-six python-tz python2.7
  python2.7-dev python2.7-minimal python3 python3-all python3-all-dev
  python3-cycler python3-dateutil python3-dev python3-isodate
  python3-matplotlib python3-minimal python3-mysqldb python3-numpy python3-pil
  python3-psycopg2 python3-pyparsing python3-rdflib python3-renderpm
  python3-reportlab python3-reportlab-accel python3-six python3-tz python3.4
  python3.4-dev python3.4-minimal python3.5 python3.5-dev python3.5-minimal
  sbuild-build-depends-python-biopython-dummy shared-mime-info t-coffee ucf
  wise wise-data x11-common
The following packages will be upgraded:
  cpp-5 g++-5 gcc-5 gcc-5-base libasan2 libatomic1 libcc1-0 libgcc-5-dev
  libgcc1 libgomp1 libstdc++-5-dev libstdc++6 libubsan0
13 upgraded, 211 newly installed, 0 to remove and 5 not upgraded.
Need to get 336 MB/336 MB of archives.
After this operation, 978 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ stretch-staging/main libgomp1 armhf 5.2.1-22+rpi1 [47.3 kB]
Get:2 http://172.17.0.1/private/ stretch-staging/main libatomic1 armhf 5.2.1-22+rpi1 [6592 B]
Get:3 http://172.17.0.1/private/ stretch-staging/main gcc-5-base armhf 5.2.1-22+rpi1 [167 kB]
Get:4 http://172.17.0.1/private/ stretch-staging/main libgcc1 armhf 1:5.2.1-22+rpi1 [38.5 kB]
Get:5 http://172.17.0.1/private/ stretch-staging/main libasan2 armhf 5.2.1-22+rpi1 [227 kB]
Get:6 http://172.17.0.1/private/ stretch-staging/main libubsan0 armhf 5.2.1-22+rpi1 [84.2 kB]
Get:7 http://172.17.0.1/private/ stretch-staging/main cpp-5 armhf 5.2.1-22+rpi1 [22.9 MB]
Get:8 http://172.17.0.1/private/ stretch-staging/main libcc1-0 armhf 5.2.1-22+rpi1 [24.7 kB]
Get:9 http://172.17.0.1/private/ stretch-staging/main g++-5 armhf 5.2.1-22+rpi1 [32.0 MB]
Get:10 http://172.17.0.1/private/ stretch-staging/main gcc-5 armhf 5.2.1-22+rpi1 [22.9 MB]
Get:11 http://172.17.0.1/private/ stretch-staging/main libgcc-5-dev armhf 5.2.1-22+rpi1 [450 kB]
Get:12 http://172.17.0.1/private/ stretch-staging/main libstdc++-5-dev armhf 5.2.1-22+rpi1 [1428 kB]
Get:13 http://172.17.0.1/private/ stretch-staging/main libstdc++6 armhf 5.2.1-22+rpi1 [328 kB]
Get:14 http://172.17.0.1/private/ stretch-staging/main groff-base armhf 1.22.3-1 [1085 kB]
Get:15 http://172.17.0.1/private/ stretch-staging/main bsdmainutils armhf 9.0.6 [177 kB]
Get:16 http://172.17.0.1/private/ stretch-staging/main libpipeline1 armhf 1.4.1-1 [23.9 kB]
Get:17 http://172.17.0.1/private/ stretch-staging/main man-db armhf 2.7.4-1 [974 kB]
Get:18 http://172.17.0.1/private/ stretch-staging/main libpython2.7-minimal armhf 2.7.10-5 [380 kB]
Get:19 http://172.17.0.1/private/ stretch-staging/main python2.7-minimal armhf 2.7.10-5 [1095 kB]
Get:20 http://172.17.0.1/private/ stretch-staging/main python-minimal armhf 2.7.9-1 [40.1 kB]
Get:21 http://172.17.0.1/private/ stretch-staging/main mime-support all 3.59 [36.4 kB]
Get:22 http://172.17.0.1/private/ stretch-staging/main libexpat1 armhf 2.1.0-7 [59.8 kB]
Get:23 http://172.17.0.1/private/ stretch-staging/main libffi6 armhf 3.2.1-3 [18.5 kB]
Get:24 http://172.17.0.1/private/ stretch-staging/main libsqlite3-0 armhf 3.8.11.1-1 [391 kB]
Get:25 http://172.17.0.1/private/ stretch-staging/main libssl1.0.0 armhf 1.0.2d-1 [882 kB]
Get:26 http://172.17.0.1/private/ stretch-staging/main libpython2.7-stdlib armhf 2.7.10-5 [1813 kB]
Get:27 http://172.17.0.1/private/ stretch-staging/main python2.7 armhf 2.7.10-5 [265 kB]
Get:28 http://172.17.0.1/private/ stretch-staging/main libpython-stdlib armhf 2.7.9-1 [19.6 kB]
Get:29 http://172.17.0.1/private/ stretch-staging/main python armhf 2.7.9-1 [151 kB]
Get:30 http://172.17.0.1/private/ stretch-staging/main libsigsegv2 armhf 2.10-4 [28.2 kB]
Get:31 http://172.17.0.1/private/ stretch-staging/main m4 armhf 1.4.17-4 [238 kB]
Get:32 http://172.17.0.1/private/ stretch-staging/main libfl-dev armhf 2.5.39-8+b1 [75.1 kB]
Get:33 http://172.17.0.1/private/ stretch-staging/main flex armhf 2.5.39-8+b1 [407 kB]
Get:34 http://172.17.0.1/private/ stretch-staging/main libfreetype6 armhf 2.6-2 [397 kB]
Get:35 http://172.17.0.1/private/ stretch-staging/main ucf all 3.0030 [69.7 kB]
Get:36 http://172.17.0.1/private/ stretch-staging/main fonts-dejavu-core all 2.35-1 [1064 kB]
Get:37 http://172.17.0.1/private/ stretch-staging/main fontconfig-config all 2.11.0-6.3 [273 kB]
Get:38 http://172.17.0.1/private/ stretch-staging/main libfontconfig1 armhf 2.11.0-6.3 [311 kB]
Get:39 http://172.17.0.1/private/ stretch-staging/main fontconfig armhf 2.11.0-6.3 [402 kB]
Get:40 http://172.17.0.1/private/ stretch-staging/main libart-2.0-2 armhf 2.3.21-2 [63.8 kB]
Get:41 http://172.17.0.1/private/ stretch-staging/main libavahi-common-data armhf 0.6.31-5 [98.8 kB]
Get:42 http://172.17.0.1/private/ stretch-staging/main libavahi-common3 armhf 0.6.31-5 [48.0 kB]
Get:43 http://172.17.0.1/private/ stretch-staging/main libavahi-client3 armhf 0.6.31-5 [50.6 kB]
Get:44 http://172.17.0.1/private/ stretch-staging/main libglib2.0-0 armhf 2.46.1-1 [2480 kB]
Get:45 http://172.17.0.1/private/ stretch-staging/main libicu55 armhf 55.1-5 [7378 kB]
Get:46 http://172.17.0.1/private/ stretch-staging/main libxml2 armhf 2.9.2+zdfsg1-4 [797 kB]
Get:47 http://172.17.0.1/private/ stretch-staging/main libcroco3 armhf 0.6.8-3 [121 kB]
Get:48 http://172.17.0.1/private/ stretch-staging/main libjbig0 armhf 2.1-3.1 [27.5 kB]
Get:49 http://172.17.0.1/private/ stretch-staging/main liblcms2-2 armhf 2.6-3 [113 kB]
Get:50 http://172.17.0.1/private/ stretch-staging/main libmpdec2 armhf 2.4.1-1 [65.8 kB]
Get:51 http://172.17.0.1/private/ stretch-staging/main libqhull6 armhf 2012.1-5 [165 kB]
Get:52 http://172.17.0.1/private/ stretch-staging/main libtcl8.6 armhf 8.6.4+dfsg-2 [866 kB]
Get:53 http://172.17.0.1/private/ stretch-staging/main libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:54 http://172.17.0.1/private/ stretch-staging/main libxdmcp6 armhf 1:1.1.2-1 [25.0 kB]
Get:55 http://172.17.0.1/private/ stretch-staging/main libxcb1 armhf 1.10-3+b1 [40.6 kB]
Get:56 http://172.17.0.1/private/ stretch-staging/main libx11-data all 2:1.6.3-1 [128 kB]
Get:57 http://172.17.0.1/private/ stretch-staging/main libx11-6 armhf 2:1.6.3-1 [678 kB]
Get:58 http://172.17.0.1/private/ stretch-staging/main libxext6 armhf 2:1.3.3-1 [48.1 kB]
Get:59 http://172.17.0.1/private/ stretch-staging/main libxrender1 armhf 1:0.9.8-1+b1 [28.4 kB]
Get:60 http://172.17.0.1/private/ stretch-staging/main libxft2 armhf 2.3.2-1 [48.3 kB]
Get:61 http://172.17.0.1/private/ stretch-staging/main x11-common all 1:7.7+12 [251 kB]
Get:62 http://172.17.0.1/private/ stretch-staging/main libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:63 http://172.17.0.1/private/ stretch-staging/main libtk8.6 armhf 8.6.4+dfsg-2 [664 kB]
Get:64 http://172.17.0.1/private/ stretch-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:65 http://172.17.0.1/private/ stretch-staging/main libwebp5 armhf 0.4.3-1.3 [174 kB]
Get:66 http://172.17.0.1/private/ stretch-staging/main libwebpdemux1 armhf 0.4.3-1.3 [52.3 kB]
Get:67 http://172.17.0.1/private/ stretch-staging/main libwebpmux1 armhf 0.4.3-1.3 [57.7 kB]
Get:68 http://172.17.0.1/private/ stretch-staging/main libxcomposite1 armhf 1:0.4.4-1 [16.8 kB]
Get:69 http://172.17.0.1/private/ stretch-staging/main libpython3.4-minimal armhf 3.4.3-10 [493 kB]
Get:70 http://172.17.0.1/private/ stretch-staging/main python3.4-minimal armhf 3.4.3-10 [1269 kB]
Get:71 http://172.17.0.1/private/ stretch-staging/main python3-minimal armhf 3.4.3-7 [35.1 kB]
Get:72 http://172.17.0.1/private/ stretch-staging/main libpython3.4-stdlib armhf 3.4.3-10 [2056 kB]
Get:73 http://172.17.0.1/private/ stretch-staging/main python3.4 armhf 3.4.3-10 [227 kB]
Get:74 http://172.17.0.1/private/ stretch-staging/main libpython3-stdlib armhf 3.4.3-7 [18.4 kB]
Get:75 http://172.17.0.1/private/ stretch-staging/main dh-python all 2.20150826 [71.5 kB]
Get:76 http://172.17.0.1/private/ stretch-staging/main python3 armhf 3.4.3-7 [21.3 kB]
Get:77 http://172.17.0.1/private/ stretch-staging/main libpython3.5-minimal armhf 3.5.0-3+rpi1 [546 kB]
Get:78 http://172.17.0.1/private/ stretch-staging/main python3.5-minimal armhf 3.5.0-3+rpi1 [1150 kB]
Get:79 http://172.17.0.1/private/ stretch-staging/main libboost-iostreams1.58.0 armhf 1.58.0+dfsg-3.1 [47.7 kB]
Get:80 http://172.17.0.1/private/ stretch-staging/main libmagic1 armhf 1:5.25-2 [250 kB]
Get:81 http://172.17.0.1/private/ stretch-staging/main file armhf 1:5.25-2 [61.2 kB]
Get:82 http://172.17.0.1/private/ stretch-staging/main gettext-base armhf 0.19.6-1 [119 kB]
Get:83 http://172.17.0.1/private/ stretch-staging/main libnettle6 armhf 3.1.1-4 [200 kB]
Get:84 http://172.17.0.1/private/ stretch-staging/main libhogweed4 armhf 3.1.1-4 [126 kB]
Get:85 http://172.17.0.1/private/ stretch-staging/main libp11-kit0 armhf 0.23.1-3 [94.2 kB]
Get:86 http://172.17.0.1/private/ stretch-staging/main libtasn1-6 armhf 4.7-2 [44.3 kB]
Get:87 http://172.17.0.1/private/ stretch-staging/main libgnutls-deb0-28 armhf 3.3.18-1 [645 kB]
Get:88 http://172.17.0.1/private/ stretch-staging/main libkeyutils1 armhf 1.5.9-8 [11.5 kB]
Get:89 http://172.17.0.1/private/ stretch-staging/main libkrb5support0 armhf 1.13.2+dfsg-2 [55.9 kB]
Get:90 http://172.17.0.1/private/ stretch-staging/main libk5crypto3 armhf 1.13.2+dfsg-2 [109 kB]
Get:91 http://172.17.0.1/private/ stretch-staging/main libkrb5-3 armhf 1.13.2+dfsg-2 [260 kB]
Get:92 http://172.17.0.1/private/ stretch-staging/main libgssapi-krb5-2 armhf 1.13.2+dfsg-2 [130 kB]
Get:93 http://172.17.0.1/private/ stretch-staging/main libsasl2-modules-db armhf 2.1.26.dfsg1-14 [65.5 kB]
Get:94 http://172.17.0.1/private/ stretch-staging/main libsasl2-2 armhf 2.1.26.dfsg1-14 [96.8 kB]
Get:95 http://172.17.0.1/private/ stretch-staging/main libldap-2.4-2 armhf 2.4.42+dfsg-2+rpi1 [197 kB]
Get:96 http://172.17.0.1/private/ stretch-staging/main libpython2.7 armhf 2.7.10-5 [909 kB]
Get:97 http://172.17.0.1/private/ stretch-staging/main libargtable2-0 armhf 12-1.1 [15.3 kB]
Get:98 http://172.17.0.1/private/ stretch-staging/main clustalo armhf 1.2.1-1 [224 kB]
Get:99 http://172.17.0.1/private/ stretch-staging/main clustalw armhf 2.1+lgpl-4 [331 kB]
Get:100 http://172.17.0.1/private/ stretch-staging/main gettext armhf 0.19.6-1 [1393 kB]
Get:101 http://172.17.0.1/private/ stretch-staging/main intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:102 http://172.17.0.1/private/ stretch-staging/main po-debconf all 1.0.18 [248 kB]
Get:103 http://172.17.0.1/private/ stretch-staging/main libarchive-zip-perl all 1.53-1 [97.3 kB]
Get:104 http://172.17.0.1/private/ stretch-staging/main libfile-stripnondeterminism-perl all 0.013-1 [10.9 kB]
Get:105 http://172.17.0.1/private/ stretch-staging/main libtimedate-perl all 2.3000-2 [42.2 kB]
Get:106 http://172.17.0.1/private/ stretch-staging/main dh-strip-nondeterminism all 0.013-1 [7308 B]
Get:107 http://172.17.0.1/private/ stretch-staging/main debhelper all 9.20151005 [817 kB]
Get:108 http://172.17.0.1/private/ stretch-staging/main dialign armhf 2.2.1-7 [132 kB]
Get:109 http://172.17.0.1/private/ stretch-staging/main libboost-program-options1.58.0 armhf 1.58.0+dfsg-3.1 [137 kB]
Get:110 http://172.17.0.1/private/ stretch-staging/main libboost-system1.58.0 armhf 1.58.0+dfsg-3.1 [30.3 kB]
Get:111 http://172.17.0.1/private/ stretch-staging/main libboost-thread1.58.0 armhf 1.58.0+dfsg-3.1 [62.5 kB]
Get:112 http://172.17.0.1/private/ stretch-staging/main dssp armhf 2.2.1-2+b1 [142 kB]
Get:113 http://172.17.0.1/private/ stretch-staging/main libjpeg62-turbo armhf 1:1.4.1-2 [103 kB]
Get:114 http://172.17.0.1/private/ stretch-staging/main libtiff5 armhf 4.0.5-1 [200 kB]
Get:115 http://172.17.0.1/private/ stretch-staging/main libvpx2 armhf 1.4.0-4+rpi1 [409 kB]
Get:116 http://172.17.0.1/private/ stretch-staging/main libxpm4 armhf 1:3.5.11-1+b1 [42.4 kB]
Get:117 http://172.17.0.1/private/ stretch-staging/main libgd3 armhf 2.1.1-4 [125 kB]
Get:118 http://172.17.0.1/private/ stretch-staging/main libhpdf-2.2.1 armhf 2.2.1-1.1 [311 kB]
Get:119 http://172.17.0.1/private/ stretch-staging/main mysql-common all 5.6.25-4 [76.4 kB]
Get:120 http://172.17.0.1/private/ stretch-staging/main libmysqlclient18 armhf 5.6.25-4 [671 kB]
Get:121 http://172.17.0.1/private/ stretch-staging/main libpq5 armhf 9.4.5-1 [108 kB]
Get:122 http://172.17.0.1/private/ stretch-staging/main emboss-lib armhf 6.6.0+dfsg-1 [2517 kB]
Get:123 http://172.17.0.1/private/ stretch-staging/main emboss-data all 6.6.0+dfsg-1 [60.8 MB]
Get:124 http://172.17.0.1/private/ stretch-staging/main emboss armhf 6.6.0+dfsg-1 [991 kB]
Get:125 http://172.17.0.1/private/ stretch-staging/main fasttree armhf 2.1.8-2 [110 kB]
Get:126 http://172.17.0.1/private/ stretch-staging/main fonts-lyx all 2.1.4-2 [202 kB]
Get:127 http://172.17.0.1/private/ stretch-staging/main gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.2 [3364 kB]
Get:128 http://172.17.0.1/private/ stretch-staging/main libatk1.0-data all 2.18.0-1 [183 kB]
Get:129 http://172.17.0.1/private/ stretch-staging/main libatk1.0-0 armhf 2.18.0-1 [84.4 kB]
Get:130 http://172.17.0.1/private/ stretch-staging/main libblas-common armhf 1.2.20110419-10 [8494 B]
Get:131 http://172.17.0.1/private/ stretch-staging/main libgfortran3 armhf 5.2.1-22+rpi1 [154 kB]
Get:132 http://172.17.0.1/private/ stretch-staging/main libblas3 armhf 1.2.20110419-10 [120 kB]
Get:133 http://172.17.0.1/private/ stretch-staging/main libpixman-1-0 armhf 0.33.2-2 [444 kB]
Get:134 http://172.17.0.1/private/ stretch-staging/main libxcb-render0 armhf 1.10-3+b1 [16.9 kB]
Get:135 http://172.17.0.1/private/ stretch-staging/main libxcb-shm0 armhf 1.10-3+b1 [11.4 kB]
Get:136 http://172.17.0.1/private/ stretch-staging/main libcairo2 armhf 1.14.2-2 [672 kB]
Get:137 http://172.17.0.1/private/ stretch-staging/main libcups2 armhf 2.1.0-4 [264 kB]
Get:138 http://172.17.0.1/private/ stretch-staging/main libdatrie1 armhf 0.2.10-1 [32.2 kB]
Get:139 http://172.17.0.1/private/ stretch-staging/main libexpat1-dev armhf 2.1.0-7 [114 kB]
Get:140 http://172.17.0.1/private/ stretch-staging/main libgdk-pixbuf2.0-common all 2.32.1-1 [311 kB]
Get:141 http://172.17.0.1/private/ stretch-staging/main libgdk-pixbuf2.0-0 armhf 2.32.1-1 [143 kB]
Get:142 http://172.17.0.1/private/ stretch-staging/main libgraphite2-3 armhf 1.3.3-1 [61.1 kB]
Get:143 http://172.17.0.1/private/ stretch-staging/main libgtk2.0-common all 2.24.28-1 [3140 kB]
Get:144 http://172.17.0.1/private/ stretch-staging/main libthai-data all 0.1.22-2 [161 kB]
Get:145 http://172.17.0.1/private/ stretch-staging/main libthai0 armhf 0.1.22-2 [44.8 kB]
Get:146 http://172.17.0.1/private/ stretch-staging/main libpango-1.0-0 armhf 1.38.1-1 [292 kB]
Get:147 http://172.17.0.1/private/ stretch-staging/main libharfbuzz0b armhf 1.0.1-1+b1 [501 kB]
Get:148 http://172.17.0.1/private/ stretch-staging/main libpangoft2-1.0-0 armhf 1.38.1-1 [229 kB]
Get:149 http://172.17.0.1/private/ stretch-staging/main libpangocairo-1.0-0 armhf 1.38.1-1 [218 kB]
Get:150 http://172.17.0.1/private/ stretch-staging/main libxfixes3 armhf 1:5.0.1-2+b2 [19.9 kB]
Get:151 http://172.17.0.1/private/ stretch-staging/main libxcursor1 armhf 1:1.1.14-1+b1 [31.9 kB]
Get:152 http://172.17.0.1/private/ stretch-staging/main libxdamage1 armhf 1:1.1.4-2+b1 [14.1 kB]
Get:153 http://172.17.0.1/private/ stretch-staging/main libxi6 armhf 2:1.7.5-1 [75.4 kB]
Get:154 http://172.17.0.1/private/ stretch-staging/main libxinerama1 armhf 2:1.1.3-1+b1 [16.4 kB]
Get:155 http://172.17.0.1/private/ stretch-staging/main libxrandr2 armhf 2:1.5.0-1 [33.3 kB]
Get:156 http://172.17.0.1/private/ stretch-staging/main shared-mime-info armhf 1.5-2 [669 kB]
Get:157 http://172.17.0.1/private/ stretch-staging/main libgtk2.0-0 armhf 2.24.28-1 [2017 kB]
Get:158 http://172.17.0.1/private/ stretch-staging/main libhmsbeagle1v5 armhf 2.1.2+20150609-1.1 [48.0 kB]
Get:159 http://172.17.0.1/private/ stretch-staging/main libjs-jquery all 1.11.3+dfsg-4 [163 kB]
Get:160 http://172.17.0.1/private/ stretch-staging/main libjs-jquery-ui all 1.10.1+dfsg-1 [499 kB]
Get:161 http://172.17.0.1/private/ stretch-staging/main liblapack3 armhf 3.5.0-4 [1316 kB]
Get:162 http://172.17.0.1/private/ stretch-staging/main libpython2.7-dev armhf 2.7.10-5 [27.2 MB]
Get:163 http://172.17.0.1/private/ stretch-staging/main libpython-dev armhf 2.7.9-1 [19.6 kB]
Get:164 http://172.17.0.1/private/ stretch-staging/main libpython-all-dev armhf 2.7.9-1 [1012 B]
Get:165 http://172.17.0.1/private/ stretch-staging/main libpython3.4 armhf 3.4.3-10 [1096 kB]
Get:166 http://172.17.0.1/private/ stretch-staging/main libpython3.4-dev armhf 3.4.3-10 [33.6 MB]
Get:167 http://172.17.0.1/private/ stretch-staging/main libpython3-dev armhf 3.4.3-7 [18.5 kB]
Get:168 http://172.17.0.1/private/ stretch-staging/main libpython3.5-stdlib armhf 3.5.0-3+rpi1 [2012 kB]
Get:169 http://172.17.0.1/private/ stretch-staging/main libpython3.5 armhf 3.5.0-3+rpi1 [1158 kB]
Get:170 http://172.17.0.1/private/ stretch-staging/main libpython3.5-dev armhf 3.5.0-3+rpi1 [36.5 MB]
Get:171 http://172.17.0.1/private/ stretch-staging/main libpython3-all-dev armhf 3.4.3-7 [970 B]
Get:172 http://172.17.0.1/private/ stretch-staging/main mafft armhf 7.245-1 [532 kB]
Get:173 http://172.17.0.1/private/ stretch-staging/main muscle armhf 1:3.8.31-1 [151 kB]
Get:174 http://172.17.0.1/private/ stretch-staging/main ncbi-data all 6.1.20120620-8 [3320 kB]
Get:175 http://172.17.0.1/private/ stretch-staging/main ncbi-blast+ armhf 2.2.30-4+b1 [6733 kB]
Get:176 http://172.17.0.1/private/ stretch-staging/main phylip armhf 1:3.696+dfsg-2 [693 kB]
Get:177 http://172.17.0.1/private/ stretch-staging/main phyml armhf 2:20141029+dfsg-1 [899 kB]
Get:178 http://172.17.0.1/private/ stretch-staging/main prank armhf 0.0.140110-1 [280 kB]
Get:179 http://172.17.0.1/private/ stretch-staging/main probcons armhf 1.12-9 [170 kB]
Get:180 http://172.17.0.1/private/ stretch-staging/main python-all armhf 2.7.9-1 [994 B]
Get:181 http://172.17.0.1/private/ stretch-staging/main python2.7-dev armhf 2.7.10-5 [279 kB]
Get:182 http://172.17.0.1/private/ stretch-staging/main python-dev armhf 2.7.9-1 [1188 B]
Get:183 http://172.17.0.1/private/ stretch-staging/main python-all-dev armhf 2.7.9-1 [1024 B]
Get:184 http://172.17.0.1/private/ stretch-staging/main python-six all 1.10.0-1 [14.1 kB]
Get:185 http://172.17.0.1/private/ stretch-staging/main python-cycler all 0.9.0-1 [5348 B]
Get:186 http://172.17.0.1/private/ stretch-staging/main python-dateutil all 2.2-2 [51.3 kB]
Get:187 http://172.17.0.1/private/ stretch-staging/main python-isodate all 0.5.4-1 [23.6 kB]
Get:188 http://172.17.0.1/private/ stretch-staging/main python-matplotlib-data all 1.5.0~rc2-1+rpi1 [2910 kB]
Get:189 http://172.17.0.1/private/ stretch-staging/main python-pyparsing all 2.0.3+dfsg1-1 [64.0 kB]
Get:190 http://172.17.0.1/private/ stretch-staging/main python-tz all 2012c+dfsg-0.1 [31.9 kB]
Get:191 http://172.17.0.1/private/ stretch-staging/main python-numpy armhf 1:1.9.2-5 [1511 kB]
Get:192 http://172.17.0.1/private/ stretch-staging/main python-matplotlib armhf 1.5.0~rc2-1+rpi1 [4242 kB]
Get:193 http://172.17.0.1/private/ stretch-staging/main python-mysqldb armhf 1.3.4-2.1 [47.7 kB]
Get:194 http://172.17.0.1/private/ stretch-staging/main python-pil armhf 2.9.0-1 [287 kB]
Get:195 http://172.17.0.1/private/ stretch-staging/main python-psycopg2 armhf 2.6.1-1 [139 kB]
Get:196 http://172.17.0.1/private/ stretch-staging/main python-rdflib armhf 4.1.2-3 [243 kB]
Get:197 http://172.17.0.1/private/ stretch-staging/main python-renderpm armhf 3.2.0-1 [30.9 kB]
Get:198 http://172.17.0.1/private/ stretch-staging/main python-reportlab-accel armhf 3.2.0-1 [23.4 kB]
Get:199 http://172.17.0.1/private/ stretch-staging/main python-reportlab all 3.2.0-1 [459 kB]
Get:200 http://172.17.0.1/private/ stretch-staging/main python3.5 armhf 3.5.0-3+rpi1 [189 kB]
Get:201 http://172.17.0.1/private/ stretch-staging/main python3-all armhf 3.4.3-7 [942 B]
Get:202 http://172.17.0.1/private/ stretch-staging/main python3.4-dev armhf 3.4.3-10 [418 kB]
Get:203 http://172.17.0.1/private/ stretch-staging/main python3-dev armhf 3.4.3-7 [1152 B]
Get:204 http://172.17.0.1/private/ stretch-staging/main python3.5-dev armhf 3.5.0-3+rpi1 [419 kB]
Get:205 http://172.17.0.1/private/ stretch-staging/main python3-all-dev armhf 3.4.3-7 [972 B]
Get:206 http://172.17.0.1/private/ stretch-staging/main python3-six all 1.10.0-1 [14.2 kB]
Get:207 http://172.17.0.1/private/ stretch-staging/main python3-cycler all 0.9.0-1 [5466 B]
Get:208 http://172.17.0.1/private/ stretch-staging/main python3-dateutil all 2.2-2 [33.2 kB]
Get:209 http://172.17.0.1/private/ stretch-staging/main python3-isodate all 0.5.4-1 [23.7 kB]
Get:210 http://172.17.0.1/private/ stretch-staging/main python3-pyparsing all 2.0.3+dfsg1-1 [64.1 kB]
Get:211 http://172.17.0.1/private/ stretch-staging/main python3-tz all 2012c+dfsg-0.1 [25.4 kB]
Get:212 http://172.17.0.1/private/ stretch-staging/main python3-numpy armhf 1:1.9.2-5 [1587 kB]
Get:213 http://172.17.0.1/private/ stretch-staging/main python3-matplotlib armhf 1.5.0~rc2-1+rpi1 [4241 kB]
Get:214 http://172.17.0.1/private/ stretch-staging/main python3-mysqldb armhf 1.3.4-2.1 [44.8 kB]
Get:215 http://172.17.0.1/private/ stretch-staging/main python3-pil armhf 2.9.0-1 [287 kB]
Get:216 http://172.17.0.1/private/ stretch-staging/main python3-psycopg2 armhf 2.6.1-1 [136 kB]
Get:217 http://172.17.0.1/private/ stretch-staging/main python3-rdflib armhf 4.1.2-3 [242 kB]
Get:218 http://172.17.0.1/private/ stretch-staging/main python3-renderpm armhf 3.2.0-1 [30.9 kB]
Get:219 http://172.17.0.1/private/ stretch-staging/main python3-reportlab-accel armhf 3.2.0-1 [19.5 kB]
Get:220 http://172.17.0.1/private/ stretch-staging/main python3-reportlab all 3.2.0-1 [456 kB]
Get:221 http://172.17.0.1/private/ stretch-staging/main t-coffee armhf 11.00.8cbe486-1 [711 kB]
Get:222 http://172.17.0.1/private/ stretch-staging/main wise-data all 2.4.1-17 [108 kB]
Get:223 http://172.17.0.1/private/ stretch-staging/main wise armhf 2.4.1-17 [700 kB]
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Setting up libsqlite3-0:armhf (3.8.11.1-1) ...
Setting up libpython2.7-stdlib:armhf (2.7.10-5) ...
Setting up python2.7 (2.7.10-5) ...
Setting up libpython-stdlib:armhf (2.7.9-1) ...
Setting up python (2.7.9-1) ...
Setting up libsigsegv2:armhf (2.10-4) ...
Setting up m4 (1.4.17-4) ...
Setting up libfl-dev:armhf (2.5.39-8+b1) ...
Setting up flex (2.5.39-8+b1) ...
Setting up libfreetype6:armhf (2.6-2) ...
Setting up ucf (3.0030) ...
Setting up fonts-dejavu-core (2.35-1) ...
Setting up fontconfig-config (2.11.0-6.3) ...
Setting up libfontconfig1:armhf (2.11.0-6.3) ...
Setting up fontconfig (2.11.0-6.3) ...
Regenerating fonts cache... done.
Setting up libart-2.0-2:armhf (2.3.21-2) ...
Setting up libavahi-common-data:armhf (0.6.31-5) ...
Setting up libavahi-common3:armhf (0.6.31-5) ...
Setting up libavahi-client3:armhf (0.6.31-5) ...
Setting up libglib2.0-0:armhf (2.46.1-1) ...
No schema files found: doing nothing.
Setting up libicu55:armhf (55.1-5) ...
Setting up libxml2:armhf (2.9.2+zdfsg1-4) ...
Setting up libcroco3:armhf (0.6.8-3) ...
Setting up libjbig0:armhf (2.1-3.1) ...
Setting up liblcms2-2:armhf (2.6-3) ...
Setting up libmpdec2:armhf (2.4.1-1) ...
Setting up libqhull6:armhf (2012.1-5) ...
Setting up libtcl8.6:armhf (8.6.4+dfsg-2) ...
Setting up libxau6:armhf (1:1.0.8-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-1) ...
Setting up libxcb1:armhf (1.10-3+b1) ...
Setting up libx11-data (2:1.6.3-1) ...
Setting up libx11-6:armhf (2:1.6.3-1) ...
Setting up libxext6:armhf (2:1.3.3-1) ...
Setting up libxrender1:armhf (1:0.9.8-1+b1) ...
Setting up libxft2:armhf (2.3.2-1) ...
Setting up x11-common (1:7.7+12) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
Running in chroot, ignoring request.
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libxss1:armhf (1:1.2.2-1) ...
Setting up libtk8.6:armhf (8.6.4+dfsg-2) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libwebp5:armhf (0.4.3-1.3) ...
Setting up libwebpdemux1:armhf (0.4.3-1.3) ...
Setting up libwebpmux1:armhf (0.4.3-1.3) ...
Setting up libxcomposite1:armhf (1:0.4.4-1) ...
Setting up libpython3.4-stdlib:armhf (3.4.3-10) ...
Setting up python3.4 (3.4.3-10) ...
Setting up libpython3-stdlib:armhf (3.4.3-7) ...
Setting up libpython3.5-minimal:armhf (3.5.0-3+rpi1) ...
Setting up python3.5-minimal (3.5.0-3+rpi1) ...
Setting up libboost-iostreams1.58.0:armhf (1.58.0+dfsg-3.1) ...
Setting up libmagic1:armhf (1:5.25-2) ...
Setting up file (1:5.25-2) ...
Setting up gettext-base (0.19.6-1) ...
Setting up libnettle6:armhf (3.1.1-4) ...
Setting up libhogweed4:armhf (3.1.1-4) ...
Setting up libp11-kit0:armhf (0.23.1-3) ...
Setting up libtasn1-6:armhf (4.7-2) ...
Setting up libgnutls-deb0-28:armhf (3.3.18-1) ...
Setting up libkeyutils1:armhf (1.5.9-8) ...
Setting up libkrb5support0:armhf (1.13.2+dfsg-2) ...
Setting up libk5crypto3:armhf (1.13.2+dfsg-2) ...
Setting up libkrb5-3:armhf (1.13.2+dfsg-2) ...
Setting up libgssapi-krb5-2:armhf (1.13.2+dfsg-2) ...
Setting up libsasl2-modules-db:armhf (2.1.26.dfsg1-14) ...
Setting up libsasl2-2:armhf (2.1.26.dfsg1-14) ...
Setting up libldap-2.4-2:armhf (2.4.42+dfsg-2+rpi1) ...
Setting up libpython2.7:armhf (2.7.10-5) ...
Setting up libargtable2-0 (12-1.1) ...
Setting up clustalo (1.2.1-1) ...
Setting up clustalw (2.1+lgpl-4) ...
Setting up gettext (0.19.6-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.18) ...
Setting up libarchive-zip-perl (1.53-1) ...
Setting up libfile-stripnondeterminism-perl (0.013-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up dialign (2.2.1-7) ...
Setting up libboost-program-options1.58.0:armhf (1.58.0+dfsg-3.1) ...
Setting up libboost-system1.58.0:armhf (1.58.0+dfsg-3.1) ...
Setting up libboost-thread1.58.0:armhf (1.58.0+dfsg-3.1) ...
Setting up dssp (2.2.1-2+b1) ...
Setting up libjpeg62-turbo:armhf (1:1.4.1-2) ...
Setting up libtiff5:armhf (4.0.5-1) ...
Setting up libvpx2:armhf (1.4.0-4+rpi1) ...
Setting up libxpm4:armhf (1:3.5.11-1+b1) ...
Setting up libgd3:armhf (2.1.1-4) ...
Setting up libhpdf-2.2.1 (2.2.1-1.1) ...
Setting up mysql-common (5.6.25-4) ...
update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode
Setting up libmysqlclient18:armhf (5.6.25-4) ...
Setting up libpq5:armhf (9.4.5-1) ...
Setting up emboss-lib (6.6.0+dfsg-1) ...
Setting up emboss-data (6.6.0+dfsg-1) ...
Setting up emboss (6.6.0+dfsg-1) ...
Setting up fasttree (2.1.8-2) ...
Setting up fonts-lyx (2.1.4-2) ...
Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ...
Setting up libatk1.0-data (2.18.0-1) ...
Setting up libatk1.0-0:armhf (2.18.0-1) ...
Setting up libblas-common (1.2.20110419-10) ...
Setting up libgfortran3:armhf (5.2.1-22+rpi1) ...
Setting up libblas3 (1.2.20110419-10) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libpixman-1-0:armhf (0.33.2-2) ...
Setting up libxcb-render0:armhf (1.10-3+b1) ...
Setting up libxcb-shm0:armhf (1.10-3+b1) ...
Setting up libcairo2:armhf (1.14.2-2) ...
Setting up libcups2:armhf (2.1.0-4) ...
Setting up libdatrie1:armhf (0.2.10-1) ...
Setting up libexpat1-dev:armhf (2.1.0-7) ...
Setting up libgdk-pixbuf2.0-common (2.32.1-1) ...
Setting up libgdk-pixbuf2.0-0:armhf (2.32.1-1) ...
Setting up libgraphite2-3:armhf (1.3.3-1) ...
Setting up libgtk2.0-common (2.24.28-1) ...
Setting up libthai-data (0.1.22-2) ...
Setting up libthai0:armhf (0.1.22-2) ...
Setting up libpango-1.0-0:armhf (1.38.1-1) ...
Setting up libharfbuzz0b:armhf (1.0.1-1+b1) ...
Setting up libpangoft2-1.0-0:armhf (1.38.1-1) ...
Setting up libpangocairo-1.0-0:armhf (1.38.1-1) ...
Setting up libxfixes3:armhf (1:5.0.1-2+b2) ...
Setting up libxcursor1:armhf (1:1.1.14-1+b1) ...
Setting up libxdamage1:armhf (1:1.1.4-2+b1) ...
Setting up libxi6:armhf (2:1.7.5-1) ...
Setting up libxinerama1:armhf (2:1.1.3-1+b1) ...
Setting up libxrandr2:armhf (2:1.5.0-1) ...
Setting up shared-mime-info (1.5-2) ...
Setting up libgtk2.0-0:armhf (2.24.28-1) ...
Setting up libhmsbeagle1v5 (2.1.2+20150609-1.1) ...
Setting up libjs-jquery (1.11.3+dfsg-4) ...
Setting up libjs-jquery-ui (1.10.1+dfsg-1) ...
Setting up liblapack3 (3.5.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up libpython2.7-dev:armhf (2.7.10-5) ...
Setting up libpython-dev:armhf (2.7.9-1) ...
Setting up libpython-all-dev:armhf (2.7.9-1) ...
Setting up libpython3.4:armhf (3.4.3-10) ...
Setting up libpython3.4-dev:armhf (3.4.3-10) ...
Setting up libpython3-dev:armhf (3.4.3-7) ...
Setting up libpython3.5-stdlib:armhf (3.5.0-3+rpi1) ...
Setting up libpython3.5:armhf (3.5.0-3+rpi1) ...
Setting up libpython3.5-dev:armhf (3.5.0-3+rpi1) ...
Setting up libpython3-all-dev:armhf (3.4.3-7) ...
Setting up mafft (7.245-1) ...
Setting up muscle (1:3.8.31-1) ...
Setting up ncbi-data (6.1.20120620-8) ...
Setting up ncbi-blast+ (2.2.30-4+b1) ...
Setting up phylip (1:3.696+dfsg-2) ...
Setting up phyml (2:20141029+dfsg-1) ...
Setting up prank (0.0.140110-1) ...
Setting up probcons (1.12-9) ...
Setting up python-all (2.7.9-1) ...
Setting up python2.7-dev (2.7.10-5) ...
Setting up python-dev (2.7.9-1) ...
Setting up python-all-dev (2.7.9-1) ...
Setting up python-six (1.10.0-1) ...
Setting up python-cycler (0.9.0-1) ...
Setting up python-dateutil (2.2-2) ...
Setting up python-isodate (0.5.4-1) ...
Setting up python-matplotlib-data (1.5.0~rc2-1+rpi1) ...
Setting up python-pyparsing (2.0.3+dfsg1-1) ...
Setting up python-tz (2012c+dfsg-0.1) ...
Setting up python-numpy (1:1.9.2-5) ...
Setting up python-matplotlib (1.5.0~rc2-1+rpi1) ...
Setting up python-mysqldb (1.3.4-2.1) ...
Setting up python-pil:armhf (2.9.0-1) ...
Setting up python-psycopg2 (2.6.1-1) ...
Setting up python-rdflib (4.1.2-3) ...
Setting up python-renderpm:armhf (3.2.0-1) ...
Setting up python-reportlab-accel:armhf (3.2.0-1) ...
Setting up python-reportlab (3.2.0-1) ...
Setting up python3.5 (3.5.0-3+rpi1) ...
Setting up python3.4-dev (3.4.3-10) ...
Setting up python3.5-dev (3.5.0-3+rpi1) ...
Setting up t-coffee (11.00.8cbe486-1) ...
Setting up wise-data (2.4.1-17) ...
Setting up wise (2.4.1-17) ...
Setting up dh-python (2.20150826) ...
Setting up python3 (3.4.3-7) ...
Setting up debhelper (9.20151005) ...
Setting up python3-all (3.4.3-7) ...
Setting up python3-dev (3.4.3-7) ...
Setting up python3-all-dev (3.4.3-7) ...
Setting up python3-six (1.10.0-1) ...
Setting up python3-cycler (0.9.0-1) ...
Setting up python3-dateutil (2.2-2) ...
Setting up python3-isodate (0.5.4-1) ...
Setting up python3-pyparsing (2.0.3+dfsg1-1) ...
Setting up python3-tz (2012c+dfsg-0.1) ...
Setting up python3-numpy (1:1.9.2-5) ...
Setting up python3-matplotlib (1.5.0~rc2-1+rpi1) ...
Setting up python3-mysqldb (1.3.4-2.1) ...
Setting up python3-pil:armhf (2.9.0-1) ...
Setting up python3-psycopg2 (2.6.1-1) ...
Setting up python3-rdflib (4.1.2-3) ...
Setting up python3-renderpm:armhf (3.2.0-1) ...
Setting up python3-reportlab-accel:armhf (3.2.0-1) ...
Setting up python3-reportlab (3.2.0-1) ...
Setting up sbuild-build-depends-python-biopython-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.013-1) ...
Processing triggers for libc-bin (2.19-22) ...
Processing triggers for systemd (227-2) ...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment                                                            │
└──────────────────────────────────────────────────────────────────────────────┘

Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25.1-3 dpkg-dev_1.18.3 g++-5_5.2.1-22+rpi1 gcc-5_5.2.1-22+rpi1 libc6-dev_2.19-22 libstdc++-5-dev_5.2.1-22+rpi1 libstdc++6_5.2.1-22+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.113+nmu3 apt_1.0.10.2 base-files_9.4+rpi1 base-passwd_3.5.38 bash_4.3-14 binutils_2.25.1-3 bsdmainutils_9.0.6 bsdutils_1:2.27-3 build-essential_11.7 bzip2_1.0.6-8 clustalo_1.2.1-1 clustalw_2.1+lgpl-4 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:5.2.1-4+rpi2 cpp-5_5.2.1-22+rpi1 dash_0.5.7-4 debconf_1.5.57 debconf-i18n_1.5.57 debfoster_2.7-2 debhelper_9.20151005 debianutils_4.5.1 dh-python_2.20150826 dh-strip-nondeterminism_0.013-1 dialign_2.2.1-7 diffutils_1:3.3-2 dmsetup_2:1.02.104-1 dpkg_1.18.3 dpkg-dev_1.18.3 dssp_2.2.1-2+b1 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 emboss_6.6.0+dfsg-1 emboss-data_6.6.0+dfsg-1 emboss-lib_6.6.0+dfsg-1 fakeroot_1.20.2-1 fasttree_2.1.8-2 file_1:5.25-2 findutils_4.4.2-9 flex_2.5.39-8+b1 fontconfig_2.11.0-6.3 fontconfig-config_2.11.0-6.3 fonts-dejavu-core_2.35-1 fonts-lyx_2.1.4-2 g++_4:5.2.1-4+rpi2 g++-5_5.2.1-22+rpi1 gcc_4:5.2.1-4+rpi2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-1 gcc-4.9-base_4.9.3-4 gcc-5_5.2.1-22+rpi1 gcc-5-base_5.2.1-22+rpi1 gettext_0.19.6-1 gettext-base_0.19.6-1 gnupg_1.4.19-5 gpgv_1.4.19-5 grep_2.21-2 groff-base_1.22.3-1 gsfonts_1:8.11+urwcyr1.0.7~pre44-4.2 gzip_1.6-4 hostname_3.16 init_1.23 init-system-helpers_1.23 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-2+rpi1 kmod_21-1 libacl1_2.2.52-2 libapparmor1_2.10-2 libapt-pkg4.16_1.0.10.2 libarchive-zip-perl_1.53-1 libargtable2-0_12-1.1 libart-2.0-2_2.3.21-2 libasan2_5.2.1-22+rpi1 libatk1.0-0_2.18.0-1 libatk1.0-data_2.18.0-1 libatomic1_5.2.1-22+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-4 libaudit1_1:2.4.4-4 libavahi-client3_0.6.31-5 libavahi-common-data_0.6.31-5 libavahi-common3_0.6.31-5 libblas-common_1.2.20110419-10 libblas3_1.2.20110419-10 libblkid1_2.27-3 libboost-iostreams1.58.0_1.58.0+dfsg-3.1 libboost-program-options1.58.0_1.58.0+dfsg-3.1 libboost-system1.58.0_1.58.0+dfsg-3.1 libboost-thread1.58.0_1.58.0+dfsg-3.1 libbz2-1.0_1.0.6-8 libc-bin_2.19-22 libc-dev-bin_2.19-22 libc6_2.19-22 libc6-dev_2.19-22 libcairo2_1.14.2-2 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.2.1-22+rpi1 libcomerr2_1.42.13-1 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5 libcups2_2.1.0-4 libdatrie1_0.2.10-1 libdb5.3_5.3.28-11 libdbus-1-3_1.10.0-3 libdebconfclient0_0.195 libdevmapper1.02.1_2:1.02.104-1 libdpkg-perl_1.18.3 libdrm2_2.4.64-1 libexpat1_2.1.0-7 libexpat1-dev_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.27-3 libffi6_3.2.1-3 libfile-stripnondeterminism-perl_0.013-1 libfl-dev_2.5.39-8+b1 libfontconfig1_2.11.0-6.3 libfreetype6_2.6-2 libgc1c2_1:7.4.2-7 libgcc-5-dev_5.2.1-22+rpi1 libgcc1_1:5.2.1-22+rpi1 libgcrypt20_1.6.3-2 libgd3_2.1.1-4 libgdbm3_1.8.3-13.1 libgdk-pixbuf2.0-0_2.32.1-1 libgdk-pixbuf2.0-common_2.32.1-1 libgfortran3_5.2.1-22+rpi1 libglib2.0-0_2.46.1-1 libgmp10_2:6.0.0+dfsg-7+rpi1 libgnutls-deb0-28_3.3.18-1 libgomp1_5.2.1-22+rpi1 libgpg-error0_1.20-1 libgraphite2-3_1.3.3-1 libgssapi-krb5-2_1.13.2+dfsg-2 libgtk2.0-0_2.24.28-1 libgtk2.0-common_2.24.28-1 libharfbuzz0b_1.0.1-1+b1 libhmsbeagle1v5_2.1.2+20150609-1.1 libhogweed4_3.1.1-4 libhpdf-2.2.1_2.2.1-1.1 libicu55_55.1-5 libisl13_0.14-2 libjbig0_2.1-3.1 libjpeg62-turbo_1:1.4.1-2 libjs-jquery_1.11.3+dfsg-4 libjs-jquery-ui_1.10.1+dfsg-1 libk5crypto3_1.13.2+dfsg-2 libkeyutils1_1.5.9-8 libklibc_2.0.4-2+rpi1 libkmod2_21-1 libkrb5-3_1.13.2+dfsg-2 libkrb5support0_1.13.2+dfsg-2 liblapack3_3.5.0-4 liblcms2-2_2.6-3 libldap-2.4-2_2.4.42+dfsg-2+rpi1 liblocale-gettext-perl_1.07-1 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.27-3 libmpc3_1.0.3-1 libmpdec2_2.4.1-1 libmpfr4_3.1.3-1 libmysqlclient18_5.6.25-4 libncurses5_6.0+20150810-1 libncursesw5_6.0+20150810-1 libnettle6_3.1.1-4 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libp11-kit0_0.23.1-3 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpango-1.0-0_1.38.1-1 libpangocairo-1.0-0_1.38.1-1 libpangoft2-1.0-0_1.38.1-1 libpcre3_2:8.35-7.2 libpipeline1_1.4.1-1 libpixman-1-0_0.33.2-2 libpng12-0_1.2.50-2+b2 libpq5_9.4.5-1 libprocps4_2:3.3.10-2 libpython-all-dev_2.7.9-1 libpython-dev_2.7.9-1 libpython-stdlib_2.7.9-1 libpython2.7_2.7.10-5 libpython2.7-dev_2.7.10-5 libpython2.7-minimal_2.7.10-5 libpython2.7-stdlib_2.7.10-5 libpython3-all-dev_3.4.3-7 libpython3-dev_3.4.3-7 libpython3-stdlib_3.4.3-7 libpython3.4_3.4.3-10 libpython3.4-dev_3.4.3-10 libpython3.4-minimal_3.4.3-10 libpython3.4-stdlib_3.4.3-10 libpython3.5_3.5.0-3+rpi1 libpython3.5-dev_3.5.0-3+rpi1 libpython3.5-minimal_3.5.0-3+rpi1 libpython3.5-stdlib_3.5.0-3+rpi1 libqhull6_2012.1-5 libreadline6_6.3-8+b3 libsasl2-2_2.1.26.dfsg1-14 libsasl2-modules-db_2.1.26.dfsg1-14 libseccomp2_2.2.3-2 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libsigsegv2_2.10-4 libsmartcols1_2.27-3 libsqlite3-0_3.8.11.1-1 libss2_1.42.13-1 libssl1.0.0_1.0.2d-1 libstdc++-5-dev_5.2.1-22+rpi1 libstdc++6_5.2.1-22+rpi1 libsystemd0_227-2 libtasn1-6_4.7-2 libtcl8.6_8.6.4+dfsg-2 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7.1 libthai-data_0.1.22-2 libthai0_0.1.22-2 libtiff5_4.0.5-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20150810-1 libtk8.6_8.6.4+dfsg-2 libubsan0_5.2.1-22+rpi1 libudev1_227-2 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27-3 libvpx2_1.4.0-4+rpi1 libwebp5_0.4.3-1.3 libwebpdemux1_0.4.3-1.3 libwebpmux1_0.4.3-1.3 libx11-6_2:1.6.3-1 libx11-data_2:1.6.3-1 libxau6_1:1.0.8-1 libxcb-render0_1.10-3+b1 libxcb-shm0_1.10-3+b1 libxcb1_1.10-3+b1 libxcomposite1_1:0.4.4-1 libxcursor1_1:1.1.14-1+b1 libxdamage1_1:1.1.4-2+b1 libxdmcp6_1:1.1.2-1 libxext6_2:1.3.3-1 libxfixes3_1:5.0.1-2+b2 libxft2_2.3.2-1 libxi6_2:1.7.5-1 libxinerama1_2:1.1.3-1+b1 libxml2_2.9.2+zdfsg1-4 libxpm4_1:3.5.11-1+b1 libxrandr2_2:1.5.0-1 libxrender1_1:0.9.8-1+b1 libxss1_1:1.2.2-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3 lsb-base_4.1+Debian13+rpi1+nmu1 m4_1.4.17-4 mafft_7.245-1 make_4.0-8.2 makedev_2.3.1-93 man-db_2.7.4-1 mawk_1.3.3-17 mime-support_3.59 mount_2.27-3 multiarch-support_2.19-22 muscle_1:3.8.31-1 mysql-common_5.6.25-4 nano_2.4.2-1 ncbi-blast+_2.2.30-4+b1 ncbi-data_6.1.20120620-8 ncurses-base_6.0+20150810-1 ncurses-bin_6.0+20150810-1 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 phylip_1:3.696+dfsg-2 phyml_2:20141029+dfsg-1 po-debconf_1.0.18 prank_0.0.140110-1 probcons_1.12-9 procps_2:3.3.10-2 python_2.7.9-1 python-all_2.7.9-1 python-all-dev_2.7.9-1 python-cycler_0.9.0-1 python-dateutil_2.2-2 python-dev_2.7.9-1 python-isodate_0.5.4-1 python-matplotlib_1.5.0~rc2-1+rpi1 python-matplotlib-data_1.5.0~rc2-1+rpi1 python-minimal_2.7.9-1 python-mysqldb_1.3.4-2.1 python-numpy_1:1.9.2-5 python-pil_2.9.0-1 python-psycopg2_2.6.1-1 python-pyparsing_2.0.3+dfsg1-1 python-rdflib_4.1.2-3 python-renderpm_3.2.0-1 python-reportlab_3.2.0-1 python-reportlab-accel_3.2.0-1 python-six_1.10.0-1 python-tz_2012c+dfsg-0.1 python2.7_2.7.10-5 python2.7-dev_2.7.10-5 python2.7-minimal_2.7.10-5 python3_3.4.3-7 python3-all_3.4.3-7 python3-all-dev_3.4.3-7 python3-cycler_0.9.0-1 python3-dateutil_2.2-2 python3-dev_3.4.3-7 python3-isodate_0.5.4-1 python3-matplotlib_1.5.0~rc2-1+rpi1 python3-minimal_3.4.3-7 python3-mysqldb_1.3.4-2.1 python3-numpy_1:1.9.2-5 python3-pil_2.9.0-1 python3-psycopg2_2.6.1-1 python3-pyparsing_2.0.3+dfsg1-1 python3-rdflib_4.1.2-3 python3-renderpm_3.2.0-1 python3-reportlab_3.2.0-1 python3-reportlab-accel_3.2.0-1 python3-six_1.10.0-1 python3-tz_2012c+dfsg-0.1 python3.4_3.4.3-10 python3.4-dev_3.4.3-10 python3.4-minimal_3.4.3-10 python3.5_3.5.0-3+rpi1 python3.5-dev_3.5.0-3+rpi1 python3.5-minimal_3.5.0-3+rpi1 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-biopython-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 shared-mime-info_1.5-2 startpar_0.59-3 systemd_227-2 systemd-sysv_227-2 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 t-coffee_11.00.8cbe486-1 tar_1.28-1 tzdata_2015g-1 ucf_3.0030 udev_227-2 util-linux_2.27-3 wise_2.4.1-17 wise-data_2.4.1-17 x11-common_1:7.7+12 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build                                                                        │
└──────────────────────────────────────────────────────────────────────────────┘


Unpack source
─────────────

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Tue Oct  6 15:04:06 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./python-biopython_1.65+dfsg-3.dsc
dpkg-source: info: extracting python-biopython in python-biopython-1.65+dfsg
dpkg-source: info: unpacking python-biopython_1.65+dfsg.orig.tar.xz
dpkg-source: info: unpacking python-biopython_1.65+dfsg-3.debian.tar.xz
dpkg-source: info: applying remove_mathml-qname.patch
dpkg-source: info: applying fix_broken_test.patch
dpkg-source: info: applying privacy_breach.patch
dpkg-source: info: applying fix_test_phyml_tool.patch
dpkg-source: info: applying fix_test_mafft_tool.patch

Check disc space
────────────────

Sufficient free space for build

User Environment
────────────────

DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-b84b16a6-7029-493b-baab-b40788de09da
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd

dpkg-buildpackage
─────────────────

dpkg-buildpackage: source package python-biopython
dpkg-buildpackage: source version 1.65+dfsg-3
dpkg-buildpackage: source distribution unstable
 dpkg-source --before-build python-biopython-1.65+dfsg
dpkg-buildpackage: host architecture armhf
 fakeroot debian/rules clean
dh clean --with python2,python3 --buildsystem=pybuild
   dh_testdir -O--buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/«BUILDDIR»/python-biopython-1.65+dfsg'
dh_auto_clean
	pybuild --clean -i python{version} -p 2.7 --dir .
I: pybuild base:170: python2.7 setup.py clean 
running clean
removing '/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
	pybuild --clean -i python{version} -p "3.5 3.4" --dir .
I: pybuild base:170: python3.5 setup.py clean 
running clean
removing '/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-3.5' does not exist -- can't clean it
I: pybuild base:170: python3.4 setup.py clean 
running clean
removing '/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-3.4' does not exist -- can't clean it
	rm -rf .pybuild/
	find . -name \*.pyc -exec rm {} \;
if [ -d Tests_avoid ] ; then \
    mv Tests_avoid/* Tests ; \
    rmdir Tests_avoid ; \
fi
rm -rf debian/tmp_tests
make[1]: Leaving directory '/«BUILDDIR»/python-biopython-1.65+dfsg'
   dh_clean -O--buildsystem=pybuild
	rm -f debian/python-biopython.substvars
	rm -f debian/python-biopython.*.debhelper
	rm -rf debian/python-biopython/
	rm -f debian/python3-biopython.substvars
	rm -f debian/python3-biopython.*.debhelper
	rm -rf debian/python3-biopython/
	rm -f debian/python-biopython-doc.substvars
	rm -f debian/python-biopython-doc.*.debhelper
	rm -rf debian/python-biopython-doc/
	rm -f debian/python-biopython-sql.substvars
	rm -f debian/python-biopython-sql.*.debhelper
	rm -rf debian/python-biopython-sql/
	rm -f debian/python3-biopython-sql.substvars
	rm -f debian/python3-biopython-sql.*.debhelper
	rm -rf debian/python3-biopython-sql/
	rm -rf debian/.debhelper/
	rm -f debian/*.debhelper.log
	rm -f -- Tests/TreeConstruction/bootstrap_consensus.tre Tests/TreeConstruction/pars1.tre Tests/TreeConstruction/pars2.tre debian/tmp_tests
	rm -f debian/files
	find .  \( \( \
		\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \
	        \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
		\) -exec rm -f {} + \) -o \
		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
	rm -f *-stamp
 debian/rules build-arch
dh build-arch --with python2,python3 --buildsystem=pybuild
   dh_testdir -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
	pybuild --configure -i python{version} -p 2.7 --dir .
I: pybuild base:170: python2.7 setup.py config 
running config
	pybuild --configure -i python{version} -p "3.5 3.4" --dir .
I: pybuild base:170: python3.5 setup.py config 
running config
I: pybuild base:170: python3.4 setup.py config 
running config
   dh_auto_build -a -O--buildsystem=pybuild
	pybuild --build -i python{version} -p 2.7 --dir .
I: pybuild base:170: /usr/bin/python setup.py build 
running build
running build_py
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/kNN.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/bgzf.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/Index.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/MarkovModel.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/ParserSupport.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/_utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/NaiveBayes.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/LogisticRegression.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/File.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/SeqFeature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/MaxEntropy.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/DocSQL.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/pairwise2.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/triefind.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/SeqRecord.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
copying Bio/Seq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align
copying Bio/Align/Generic.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align
copying Bio/Align/AlignInfo.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align
copying Bio/Align/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications
copying Bio/Align/Applications/_Mafft.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications
copying Bio/Align/Applications/_ClustalOmega.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications
copying Bio/Align/Applications/_Prank.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications
copying Bio/Align/Applications/_MSAProbs.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications
copying Bio/Align/Applications/_Probcons.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications
copying Bio/Align/Applications/_TCoffee.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications
copying Bio/Align/Applications/_Muscle.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications
copying Bio/Align/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications
copying Bio/Align/Applications/_Clustalw.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications
copying Bio/Align/Applications/_Dialign.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO
copying Bio/AlignIO/ClustalIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO
copying Bio/AlignIO/Interfaces.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO
copying Bio/AlignIO/EmbossIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO
copying Bio/AlignIO/FastaIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO
copying Bio/AlignIO/StockholmIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO
copying Bio/AlignIO/NexusIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO
copying Bio/AlignIO/PhylipIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO
copying Bio/AlignIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Alphabet
copying Bio/Alphabet/IUPAC.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Alphabet
copying Bio/Alphabet/Reduced.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Alphabet
copying Bio/Alphabet/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Alphabet
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Application
copying Bio/Application/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Application
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast
copying Bio/Blast/NCBIWWW.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast
copying Bio/Blast/NCBIXML.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast
copying Bio/Blast/NCBIStandalone.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast
copying Bio/Blast/ParseBlastTable.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast
copying Bio/Blast/Record.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast
copying Bio/Blast/Applications.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast
copying Bio/Blast/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/CAPS
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copying Bio/codonalign/chisq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/codonalign
copying Bio/codonalign/codonseq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/codonalign
copying Bio/codonalign/codonalphabet.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/codonalign
copying Bio/codonalign/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/codonalign
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copying Bio/ExPASy/ScanProsite.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/ExPASy
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copying Bio/ExPASy/Enzyme.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/ExPASy
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copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/archivearticle.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isonum.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/mathmlsetup.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/mmlextra.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isopub.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/display.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isolat2.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isomfrk.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isoamsc.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/archivecustom-models.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/default-classes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/mmlalias.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/common.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isoamsn.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isoamsb.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/format.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/list.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/articlemeta.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/link.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/section.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isolat1.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isocyr2.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isotech.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isodia.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/backmatter.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isomopf.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/chars.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/notat.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isogrk4.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/references.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isoamsa.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isobox.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/default-mixes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isomscr.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isocyr1.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/journalmeta.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isogrk1.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isogrk3.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/para.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isoamsr.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/xmlspecchars.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isoamso.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/phrase.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/math.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isogrk2.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/modules.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data
copying Bio/PopGen/SimCoal/data/ssm_1d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data
copying Bio/PopGen/SimCoal/data/split_island.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data
copying Bio/PopGen/SimCoal/data/split_ssm_1d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data
copying Bio/PopGen/SimCoal/data/decline_split.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data
copying Bio/PopGen/SimCoal/data/simple.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data
copying Bio/PopGen/SimCoal/data/ssm_2d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data
copying Bio/PopGen/SimCoal/data/bottle.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data
copying Bio/PopGen/SimCoal/data/island.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data
copying Bio/PopGen/SimCoal/data/decline_lambda.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data
copying Bio/PopGen/SimCoal/data/split_ssm_2d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data
running build_ext
building 'Bio.cpairwise2' extension
creating build
creating build/temp.linux-armv7l-2.7
creating build/temp.linux-armv7l-2.7/Bio
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/cpairwise2module.c -o build/temp.linux-armv7l-2.7/Bio/cpairwise2module.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/Bio/cpairwise2module.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/cpairwise2.so
building 'Bio.trie' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python2.7 -c Bio/triemodule.c -o build/temp.linux-armv7l-2.7/Bio/triemodule.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python2.7 -c Bio/trie.c -o build/temp.linux-armv7l-2.7/Bio/trie.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/Bio/triemodule.o build/temp.linux-armv7l-2.7/Bio/trie.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/trie.so
building 'Bio.Nexus.cnexus' extension
creating build/temp.linux-armv7l-2.7/Bio/Nexus
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/Nexus/cnexus.c -o build/temp.linux-armv7l-2.7/Bio/Nexus/cnexus.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/Bio/Nexus/cnexus.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Nexus/cnexus.so
building 'Bio.Cluster.cluster' extension
creating build/temp.linux-armv7l-2.7/Bio/Cluster
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/Cluster/clustermodule.c -o build/temp.linux-armv7l-2.7/Bio/Cluster/clustermodule.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/Cluster/cluster.c -o build/temp.linux-armv7l-2.7/Bio/Cluster/cluster.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/Bio/Cluster/clustermodule.o build/temp.linux-armv7l-2.7/Bio/Cluster/cluster.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Cluster/cluster.so
building 'Bio.KDTree._CKDTree' extension
creating build/temp.linux-armv7l-2.7/Bio/KDTree
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/KDTree/KDTree.c -o build/temp.linux-armv7l-2.7/Bio/KDTree/KDTree.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/KDTree/KDTreemodule.c -o build/temp.linux-armv7l-2.7/Bio/KDTree/KDTreemodule.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/Bio/KDTree/KDTree.o build/temp.linux-armv7l-2.7/Bio/KDTree/KDTreemodule.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KDTree/_CKDTree.so
building 'Bio.Motif._pwm' extension
creating build/temp.linux-armv7l-2.7/Bio/Motif
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/Motif/_pwm.c -o build/temp.linux-armv7l-2.7/Bio/Motif/_pwm.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/Bio/Motif/_pwm.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif/_pwm.so
building 'Bio.motifs._pwm' extension
creating build/temp.linux-armv7l-2.7/Bio/motifs
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/motifs/_pwm.c -o build/temp.linux-armv7l-2.7/Bio/motifs/_pwm.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/Bio/motifs/_pwm.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/_pwm.so
	pybuild --build -i python{version} -p "3.5 3.4" --dir .
I: pybuild base:170: /usr/bin/python3.5 setup.py build 
running build
running build_py
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio
copying Bio/kNN.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio
copying Bio/bgzf.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio
copying Bio/Index.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio
copying Bio/MarkovModel.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio
copying Bio/ParserSupport.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio
copying Bio/_utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio
copying Bio/NaiveBayes.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio
copying Bio/LogisticRegression.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio
copying Bio/File.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio
copying Bio/SeqFeature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio
copying Bio/MaxEntropy.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio
copying Bio/DocSQL.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio
copying Bio/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio
copying Bio/pairwise2.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio
copying Bio/triefind.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio
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copying Bio/Motif/Parsers/MEME.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif/Parsers
copying Bio/Motif/Parsers/MAST.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif/Parsers
copying Bio/Motif/Parsers/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif/Parsers
copying Bio/Motif/Parsers/AlignAce.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif/Parsers
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif/Applications
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copying Bio/motifs/matrix.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs
copying Bio/motifs/alignace.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs
copying Bio/motifs/thresholds.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs
copying Bio/motifs/meme.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs
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copying Bio/motifs/applications/_alignace.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/applications
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creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/jaspar
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copying Bio/motifs/jaspar/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/jaspar
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creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/BackPropagation
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copying Bio/NeuralNetwork/BackPropagation/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/BackPropagation
copying Bio/NeuralNetwork/BackPropagation/Layer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/BackPropagation
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copying Bio/NeuralNetwork/Gene/Motif.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/Gene
copying Bio/NeuralNetwork/Gene/Signature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/Gene
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copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/PRF_General.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_100101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_090101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/MMDB.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_130501.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/eSpell.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/EMBL_General.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/MMDB.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/archivearticle.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isonum.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/mathmlsetup.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/mmlextra.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isopub.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/display.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isolat2.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isomfrk.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isoamsc.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/archivecustom-models.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/default-classes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/mmlalias.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/common.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isoamsn.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isoamsb.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/format.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/list.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/articlemeta.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/link.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/section.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isolat1.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isocyr2.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isotech.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isodia.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/backmatter.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isomopf.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/chars.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/notat.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isogrk4.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/references.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isoamsa.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isobox.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/default-mixes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isomscr.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isocyr1.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/journalmeta.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isogrk1.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isogrk3.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/para.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isoamsr.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/xmlspecchars.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isoamso.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/phrase.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/math.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isogrk2.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/modules.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data
copying Bio/PopGen/SimCoal/data/ssm_1d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data
copying Bio/PopGen/SimCoal/data/split_island.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data
copying Bio/PopGen/SimCoal/data/split_ssm_1d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data
copying Bio/PopGen/SimCoal/data/decline_split.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data
copying Bio/PopGen/SimCoal/data/simple.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data
copying Bio/PopGen/SimCoal/data/ssm_2d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data
copying Bio/PopGen/SimCoal/data/bottle.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data
copying Bio/PopGen/SimCoal/data/island.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data
copying Bio/PopGen/SimCoal/data/decline_lambda.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data
copying Bio/PopGen/SimCoal/data/split_ssm_2d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data
running build_ext
building 'Bio.cpairwise2' extension
creating build/temp.linux-armv7l-3.5
creating build/temp.linux-armv7l-3.5/Bio
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c Bio/cpairwise2module.c -o build/temp.linux-armv7l-3.5/Bio/cpairwise2module.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/Bio/cpairwise2module.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/cpairwise2.cpython-35m-arm-linux-gnueabihf.so
building 'Bio.trie' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python3.5m -c Bio/triemodule.c -o build/temp.linux-armv7l-3.5/Bio/triemodule.o
Bio/triemodule.c:568:5: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types]
     trie_nohash,        /*tp_hash */
     ^
Bio/triemodule.c:568:5: note: (near initialization for ‘Trie_Type.tp_hash’)
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python3.5m -c Bio/trie.c -o build/temp.linux-armv7l-3.5/Bio/trie.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/Bio/triemodule.o build/temp.linux-armv7l-3.5/Bio/trie.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/trie.cpython-35m-arm-linux-gnueabihf.so
building 'Bio.Nexus.cnexus' extension
creating build/temp.linux-armv7l-3.5/Bio/Nexus
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c Bio/Nexus/cnexus.c -o build/temp.linux-armv7l-3.5/Bio/Nexus/cnexus.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/Bio/Nexus/cnexus.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Nexus/cnexus.cpython-35m-arm-linux-gnueabihf.so
building 'Bio.Cluster.cluster' extension
creating build/temp.linux-armv7l-3.5/Bio/Cluster
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c Bio/Cluster/clustermodule.c -o build/temp.linux-armv7l-3.5/Bio/Cluster/clustermodule.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c Bio/Cluster/cluster.c -o build/temp.linux-armv7l-3.5/Bio/Cluster/cluster.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/Bio/Cluster/clustermodule.o build/temp.linux-armv7l-3.5/Bio/Cluster/cluster.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Cluster/cluster.cpython-35m-arm-linux-gnueabihf.so
building 'Bio.KDTree._CKDTree' extension
creating build/temp.linux-armv7l-3.5/Bio/KDTree
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c Bio/KDTree/KDTree.c -o build/temp.linux-armv7l-3.5/Bio/KDTree/KDTree.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c Bio/KDTree/KDTreemodule.c -o build/temp.linux-armv7l-3.5/Bio/KDTree/KDTreemodule.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/Bio/KDTree/KDTree.o build/temp.linux-armv7l-3.5/Bio/KDTree/KDTreemodule.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KDTree/_CKDTree.cpython-35m-arm-linux-gnueabihf.so
building 'Bio.Motif._pwm' extension
creating build/temp.linux-armv7l-3.5/Bio/Motif
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c Bio/Motif/_pwm.c -o build/temp.linux-armv7l-3.5/Bio/Motif/_pwm.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/Bio/Motif/_pwm.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif/_pwm.cpython-35m-arm-linux-gnueabihf.so
building 'Bio.motifs._pwm' extension
creating build/temp.linux-armv7l-3.5/Bio/motifs
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c Bio/motifs/_pwm.c -o build/temp.linux-armv7l-3.5/Bio/motifs/_pwm.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/Bio/motifs/_pwm.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/_pwm.cpython-35m-arm-linux-gnueabihf.so
I: pybuild base:170: /usr/bin/python3 setup.py build 
running build
running build_py
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio
copying Bio/kNN.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio
copying Bio/bgzf.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio
copying Bio/Index.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio
copying Bio/MarkovModel.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio
copying Bio/ParserSupport.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio
copying Bio/_utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio
copying Bio/NaiveBayes.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio
copying Bio/LogisticRegression.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio
copying Bio/File.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio
copying Bio/SeqFeature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio
copying Bio/MaxEntropy.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio
copying Bio/DocSQL.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio
copying Bio/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio
copying Bio/pairwise2.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio
copying Bio/triefind.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio
copying Bio/SeqRecord.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio
copying Bio/Seq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align
copying Bio/Align/Generic.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align
copying Bio/Align/AlignInfo.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align
copying Bio/Align/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications
copying Bio/Align/Applications/_Mafft.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications
copying Bio/Align/Applications/_ClustalOmega.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications
copying Bio/Align/Applications/_Prank.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications
copying Bio/Align/Applications/_MSAProbs.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications
copying Bio/Align/Applications/_Probcons.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications
copying Bio/Align/Applications/_TCoffee.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications
copying Bio/Align/Applications/_Muscle.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications
copying Bio/Align/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications
copying Bio/Align/Applications/_Clustalw.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications
copying Bio/Align/Applications/_Dialign.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO
copying Bio/AlignIO/ClustalIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO
copying Bio/AlignIO/Interfaces.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO
copying Bio/AlignIO/EmbossIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO
copying Bio/AlignIO/FastaIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO
copying Bio/AlignIO/StockholmIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO
copying Bio/AlignIO/NexusIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO
copying Bio/AlignIO/PhylipIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO
copying Bio/AlignIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Alphabet
copying Bio/Alphabet/IUPAC.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Alphabet
copying Bio/Alphabet/Reduced.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Alphabet
copying Bio/Alphabet/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Alphabet
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Application
copying Bio/Application/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Application
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast
copying Bio/Blast/NCBIWWW.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast
copying Bio/Blast/NCBIXML.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast
copying Bio/Blast/NCBIStandalone.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast
copying Bio/Blast/ParseBlastTable.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast
copying Bio/Blast/Record.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast
copying Bio/Blast/Applications.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast
copying Bio/Blast/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/CAPS
copying Bio/CAPS/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/CAPS
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/codonalign
copying Bio/codonalign/chisq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/codonalign
copying Bio/codonalign/codonseq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/codonalign
copying Bio/codonalign/codonalphabet.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/codonalign
copying Bio/codonalign/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/codonalign
copying Bio/codonalign/codonalignment.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/codonalign
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Compass
copying Bio/Compass/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Compass
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Crystal
copying Bio/Crystal/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Crystal
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Data
copying Bio/Data/SCOPData.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Data
copying Bio/Data/IUPACData.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Data
copying Bio/Data/CodonTable.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Data
copying Bio/Data/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Data
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Emboss
copying Bio/Emboss/Primer3.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Emboss
copying Bio/Emboss/Applications.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Emboss
copying Bio/Emboss/PrimerSearch.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Emboss
copying Bio/Emboss/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Emboss
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez
copying Bio/Entrez/Parser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez
copying Bio/Entrez/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/ExPASy
copying Bio/ExPASy/Prodoc.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/ExPASy
copying Bio/ExPASy/ScanProsite.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/ExPASy
copying Bio/ExPASy/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/ExPASy
copying Bio/ExPASy/Enzyme.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/ExPASy
copying Bio/ExPASy/Prosite.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/ExPASy
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/FSSP
copying Bio/FSSP/FSSPTools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/FSSP
copying Bio/FSSP/fssp_rec.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/FSSP
copying Bio/FSSP/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/FSSP
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA
copying Bio/GA/Organism.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA
copying Bio/GA/Evolver.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA
copying Bio/GA/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Crossover
copying Bio/GA/Crossover/General.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Crossover
copying Bio/GA/Crossover/TwoPoint.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Crossover
copying Bio/GA/Crossover/GeneralPoint.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Crossover
copying Bio/GA/Crossover/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Crossover
copying Bio/GA/Crossover/Uniform.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Crossover
copying Bio/GA/Crossover/Point.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Crossover
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Mutation
copying Bio/GA/Mutation/General.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Mutation
copying Bio/GA/Mutation/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Mutation
copying Bio/GA/Mutation/Simple.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Mutation
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Repair
copying Bio/GA/Repair/Stabilizing.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Repair
copying Bio/GA/Repair/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Repair
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Selection
copying Bio/GA/Selection/Tournament.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Selection
copying Bio/GA/Selection/RouletteWheel.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Selection
copying Bio/GA/Selection/Abstract.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Selection
copying Bio/GA/Selection/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Selection
copying Bio/GA/Selection/Diversity.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Selection
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GenBank
copying Bio/GenBank/utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GenBank
copying Bio/GenBank/Record.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GenBank
copying Bio/GenBank/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GenBank
copying Bio/GenBank/Scanner.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GenBank
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Geo
copying Bio/Geo/Record.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Geo
copying Bio/Geo/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Geo
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics
copying Bio/Graphics/BasicChromosome.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics
copying Bio/Graphics/ColorSpiral.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics
copying Bio/Graphics/KGML_vis.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics
copying Bio/Graphics/Distribution.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics
copying Bio/Graphics/Comparative.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics
copying Bio/Graphics/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics
copying Bio/Graphics/DisplayRepresentation.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics
creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram
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copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_Colors.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_Feature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram
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copying Bio/HMM/Trainer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/HMM
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copying Bio/motifs/thresholds.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs
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creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs/jaspar
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creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork/BackPropagation
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creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Restriction
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creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KDTree
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copying Bio/PopGen/SimCoal/data/decline_lambda.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data
copying Bio/PopGen/SimCoal/data/split_ssm_2d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data
running build_ext
building 'Bio.cpairwise2' extension
creating build/temp.linux-armv7l-3.4
creating build/temp.linux-armv7l-3.4/Bio
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.4m -c Bio/cpairwise2module.c -o build/temp.linux-armv7l-3.4/Bio/cpairwise2module.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/Bio/cpairwise2module.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/cpairwise2.cpython-34m.so
building 'Bio.trie' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python3.4m -c Bio/triemodule.c -o build/temp.linux-armv7l-3.4/Bio/triemodule.o
Bio/triemodule.c:568:5: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types]
     trie_nohash,        /*tp_hash */
     ^
Bio/triemodule.c:568:5: note: (near initialization for ‘Trie_Type.tp_hash’)
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python3.4m -c Bio/trie.c -o build/temp.linux-armv7l-3.4/Bio/trie.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/Bio/triemodule.o build/temp.linux-armv7l-3.4/Bio/trie.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/trie.cpython-34m.so
building 'Bio.Nexus.cnexus' extension
creating build/temp.linux-armv7l-3.4/Bio/Nexus
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.4m -c Bio/Nexus/cnexus.c -o build/temp.linux-armv7l-3.4/Bio/Nexus/cnexus.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/Bio/Nexus/cnexus.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Nexus/cnexus.cpython-34m.so
building 'Bio.Cluster.cluster' extension
creating build/temp.linux-armv7l-3.4/Bio/Cluster
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.4m -c Bio/Cluster/clustermodule.c -o build/temp.linux-armv7l-3.4/Bio/Cluster/clustermodule.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.4m -c Bio/Cluster/cluster.c -o build/temp.linux-armv7l-3.4/Bio/Cluster/cluster.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/Bio/Cluster/clustermodule.o build/temp.linux-armv7l-3.4/Bio/Cluster/cluster.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Cluster/cluster.cpython-34m.so
building 'Bio.KDTree._CKDTree' extension
creating build/temp.linux-armv7l-3.4/Bio/KDTree
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.4m -c Bio/KDTree/KDTree.c -o build/temp.linux-armv7l-3.4/Bio/KDTree/KDTree.o
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.4m -c Bio/KDTree/KDTreemodule.c -o build/temp.linux-armv7l-3.4/Bio/KDTree/KDTreemodule.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/Bio/KDTree/KDTree.o build/temp.linux-armv7l-3.4/Bio/KDTree/KDTreemodule.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KDTree/_CKDTree.cpython-34m.so
building 'Bio.Motif._pwm' extension
creating build/temp.linux-armv7l-3.4/Bio/Motif
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.4m -c Bio/Motif/_pwm.c -o build/temp.linux-armv7l-3.4/Bio/Motif/_pwm.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/Bio/Motif/_pwm.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif/_pwm.cpython-34m.so
building 'Bio.motifs._pwm' extension
creating build/temp.linux-armv7l-3.4/Bio/motifs
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.4m -c Bio/motifs/_pwm.c -o build/temp.linux-armv7l-3.4/Bio/motifs/_pwm.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/Bio/motifs/_pwm.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs/_pwm.cpython-34m.so
   debian/rules override_dh_auto_test
make[1]: Entering directory '/«BUILDDIR»/python-biopython-1.65+dfsg'
mkdir -p Tests_avoid
for avoid in  PAML_tools EmbossPhylipNew MSAProbs_tool NACCESS_tool PopGen_DFDist PopGen_FDist PopGen_GenePop PopGen_GenePop_EasyController PopGen_SimCoal XXmotif_tool BWA_tool raxml_tool BioSQL_MySQLdb BioSQL_psycopg2  samtools_tool \
	    ; do \
    mv Tests/test_${avoid}.py Tests_avoid ; \
done
# For the doc package we need a clean testsuite without all the remaining files.  So keep a clean copy here
mkdir -p debian/tmp_tests
cp -a Tests debian/tmp_tests
# remove duplicated file
rm -f debian/tmp_tests/Tests/Quality/example.fastq.gz
# We also keep the tests we need to avoid for later inspection
cp -a Tests_avoid debian/tmp_tests
# in the Debian package dialign it is not needed to set DIALIGN2_DIR but the test is verifying this dir 
# to run the EMBOSS test test_Emboss also requires to have the environment variable EMBOSS_ROOT set
LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \
	--test-args='set -e; \
                             mkdir -p {build_dir}/home; \
                             mkdir -p {build_dir}/Doc/examples; \
                             cp -a Doc/Tutorial.tex {build_dir}/Doc; \
                             cp -a Doc/Tutorial {build_dir}/Doc; \
                             cp -a Doc/examples {build_dir}/Doc; \
                             cp -a Tests {build_dir}; \
                             cd {build_dir}/Tests; \
                             env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline'
	pybuild --test -i python{version} -p 2.7 --test --system=custom "--test-args=set -e; \\\
                             mkdir -p {build_dir}/home; \\\
                             mkdir -p {build_dir}/Doc/examples; \\\
                             cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\
                             cp -a Doc/Tutorial {build_dir}/Doc; \\\
                             cp -a Doc/examples {build_dir}/Doc; \\\
                             cp -a Tests {build_dir}; \\\
                             cd {build_dir}/Tests; \\\
                             env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline" --dir .
I: pybuild base:170: set -e; \
                             mkdir -p /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/home; \
                             mkdir -p /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Doc/examples; \
                             cp -a Doc/Tutorial.tex /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Doc; \
                             cp -a Doc/Tutorial /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Doc; \
                             cp -a Doc/examples /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Doc; \
                             cp -a Tests /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build; \
                             cd /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Tests; \
                             env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/home python2.7 run_tests.py --offline
test_Ace ... ok
test_AlignIO ... ok
test_AlignIO_ClustalIO ... ok
test_AlignIO_EmbossIO ... ok
test_AlignIO_FastaIO ... ok
test_AlignIO_PhylipIO ... ok
test_AlignIO_convert ... ok
test_Application ... ok
test_BioSQL_mysql_connector ... skipping. Install mysql.connector if you want to use mysql with BioSQL 
test_BioSQL_sqlite3 ... ok
test_CAPS ... ok
test_CelFile ... ok
test_Chi2 ... ok
test_ClustalOmega_tool ... ok
test_Clustalw_tool ... ok
test_Cluster ... ok
test_CodonTable ... ok
test_CodonUsage ... ok
test_ColorSpiral ... ok
test_Compass ... ok
test_Consensus ... ok
test_Crystal ... ok
test_DSSP_tool ... ok
test_Dialign_tool ... ok
test_DocSQL ... ok
test_Emboss ... ok
test_EmbossPrimer ... ok
test_Entrez ... ok
test_Entrez_online ... skipping. internet not available
test_Enzyme ... ok
test_FSSP ... ok
test_Fasttree_tool ... ok
test_File ... ok
test_GACrossover ... ok
test_GAMutation ... ok
test_GAOrganism ... ok
test_GAQueens ... ok
test_GARepair ... ok
test_GASelection ... ok
test_GenBank ... ok
test_GenBank_unittest ... ok
test_GenomeDiagram ... ok
test_GraphicsBitmaps ... ok
test_GraphicsChromosome ... ok
test_GraphicsDistribution ... ok
test_GraphicsGeneral ... ok
test_HMMCasino ... ok
test_HMMGeneral ... ok
test_KDTree ... ok
test_KEGG ... ok
test_KEGG_online ... skipping. internet not available
test_KGML_graphics ... ok
test_KGML_nographics ... ok
test_KeyWList ... ok
test_Location ... ok
test_LogisticRegression ... ok
test_MMCIF ... ok
test_Mafft_tool ... ok
test_MarkovModel ... ok
test_Medline ... ok
test_Motif ... ok
test_Muscle_tool ... ok
test_NCBITextParser ... ok
test_NCBIXML ... ok
test_NCBI_BLAST_tools ... ok
test_NCBI_qblast ... skipping. internet not available
test_NNExclusiveOr ... ok
test_NNGene ... ok
test_NNGeneral ... ok
test_Nexus ... ok
test_PAML_baseml ... ok
test_PAML_codeml ... ok
test_PAML_yn00 ... ok
test_PDB ... ok
test_PDB_KDTree ... ok
test_ParserSupport ... ok
test_Pathway ... ok
test_Phd ... ok
test_Phylo ... ok
test_PhyloXML ... ok
test_Phylo_CDAO ... ok
test_Phylo_NeXML ... ok
test_Phylo_depend ... ok
test_PopGen_FDist_nodepend ... ok
test_PopGen_FastSimCoal ... skipping. Install fastsimcoal if you want to use Bio.PopGen.SimCoal.Controller.FastSimCoalController.
test_PopGen_GenePop_nodepend ... ok
test_PopGen_SimCoal_nodepend ... ok
test_Prank_tool ... ok
test_Probcons_tool ... ok
test_ProtParam ... ok
test_Restriction ... ok
test_SCOP_Astral ... ok
test_SCOP_Cla ... ok
test_SCOP_Des ... ok
test_SCOP_Dom ... ok
test_SCOP_Hie ... ok
test_SCOP_Raf ... ok
test_SCOP_Residues ... ok
test_SCOP_Scop ... ok
test_SCOP_online ... skipping. internet not available
test_SVDSuperimposer ... ok
test_SearchIO_blast_tab ... ok
test_SearchIO_blast_tab_index ... ok
test_SearchIO_blast_text ... ok
test_SearchIO_blast_xml ... ok
test_SearchIO_blast_xml_index ... ok
test_SearchIO_blat_psl ... ok
test_SearchIO_blat_psl_index ... ok
test_SearchIO_exonerate ... ok
test_SearchIO_exonerate_text_index ... ok
test_SearchIO_exonerate_vulgar_index ... ok
test_SearchIO_fasta_m10 ... ok
test_SearchIO_fasta_m10_index ... ok
test_SearchIO_hmmer2_text ... ok
test_SearchIO_hmmer2_text_index ... ok
test_SearchIO_hmmer3_domtab ... ok
test_SearchIO_hmmer3_domtab_index ... ok
test_SearchIO_hmmer3_tab ... ok
test_SearchIO_hmmer3_tab_index ... ok
test_SearchIO_hmmer3_text ... ok
test_SearchIO_hmmer3_text_index ... ok
test_SearchIO_model ... ok
test_SearchIO_write ... ok
test_SeqIO ... ok
test_SeqIO_AbiIO ... ok
test_SeqIO_FastaIO ... ok
test_SeqIO_Insdc ... ok
test_SeqIO_PdbIO ... ok
test_SeqIO_QualityIO ... ok
test_SeqIO_SeqXML ... ok
test_SeqIO_convert ... ok
test_SeqIO_features ... ok
test_SeqIO_index ... ok
test_SeqIO_online ... skipping. internet not available
test_SeqIO_write ... ok
test_SeqRecord ... ok
test_SeqUtils ... ok
test_Seq_objs ... ok
test_SffIO ... ok
test_SubsMat ... ok
test_SwissProt ... ok
test_TCoffee_tool ... ok
test_TogoWS ... skipping. internet not available
test_TreeConstruction ... ok
test_Tutorial ... ok
test_UniGene ... ok
test_Uniprot ... ok
test_Wise ... ok
test_align ... ok
test_bgzf ... ok
test_codonalign ... ok
test_geo ... ok
test_kNN ... ok
test_lowess ... ok
test_motifs ... ok
test_pairwise2 ... ok
test_phyml_tool ... ok
test_prodoc ... ok
test_prosite1 ... ok
test_prosite2 ... ok
test_psw ... ok
test_py3k ... ok
test_seq ... ok
test_translate ... ok
test_trie ... ok
Bio.Align docstring test ... ok
Bio.Align.Generic docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Generic.py:55: BiopythonDeprecationWarning: With the introduction of the MultipleSeqAlignment class in Bio.Align, this base class is deprecated and is likely to be removed in a future release of Biopython.
  warnings.warn("With the introduction of the MultipleSeqAlignment class in Bio.Align, this base class is deprecated and is likely to be removed in a future release of Biopython.", Bio.BiopythonDeprecationWarning)
ok
Bio.Align.Applications._Clustalw docstring test ... ok
Bio.Align.Applications._ClustalOmega docstring test ... ok
Bio.Align.Applications._MSAProbs docstring test ... ok
Bio.Align.Applications._Mafft docstring test ... ok
Bio.Align.Applications._Muscle docstring test ... ok
Bio.Align.Applications._Probcons docstring test ... ok
Bio.Align.Applications._Prank docstring test ... ok
Bio.Align.Applications._TCoffee docstring test ... ok
Bio.AlignIO docstring test ... ok
Bio.AlignIO.StockholmIO docstring test ... ok
Bio.Alphabet docstring test ... ok
Bio.Application docstring test ... ok
Bio.bgzf docstring test ... ok
Bio.codonalign docstring test ... ok
Bio.Blast.Applications docstring test ... ok
Bio.Emboss.Applications docstring test ... ok
Bio.GenBank docstring test ... ok
Bio.KEGG.Compound docstring test ... ok
Bio.KEGG.Enzyme docstring test ... ok
Bio.NMR.xpktools docstring test ... ok
Bio.Motif docstring test ... ok
Bio.motifs docstring test ... ok
Bio.motifs.applications._alignace docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/applications/_alignace.py:54: BiopythonDeprecationWarning: The AlignACE application wrapper is deprecated and
                      is likely to be removed in a future release of Biopython,
                      since an up to date version of the AlignACE software
                      cannot be obtained anymore. If you have a copy of
                      AlignACE 4, please consider contacting the Biopython
                      developers.
  developers.""", BiopythonDeprecationWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/applications/_alignace.py:122: BiopythonDeprecationWarning: The CompareACE application wrapper is deprecated and
                      is likely to be removed in a future release of Biopython,
                      since an up to date version of the AlignACE software
                      cannot be obtained anymore. If you have a copy of
                      AlignACE 4, please consider contacting the Biopython
                      developers.
  developers.""", BiopythonDeprecationWarning)
ok
Bio.motifs.applications._xxmotif docstring test ... ok
Bio.pairwise2 docstring test ... ok
Bio.Phylo.Applications._Raxml docstring test ... ok
Bio.SearchIO docstring test ... ok
Bio.SearchIO._model docstring test ... ok
Bio.SearchIO._model.query docstring test ... ok
Bio.SearchIO._model.hit docstring test ... ok
Bio.SearchIO._model.hsp docstring test ... ok
Bio.SearchIO.BlastIO docstring test ... ok
Bio.SearchIO.HmmerIO docstring test ... ok
Bio.SearchIO.FastaIO docstring test ... ok
Bio.SearchIO.BlatIO docstring test ... ok
Bio.SearchIO.ExonerateIO docstring test ... ok
Bio.Seq docstring test ... ok
Bio.SeqIO docstring test ... ok
Bio.SeqIO.FastaIO docstring test ... ok
Bio.SeqIO.AceIO docstring test ... ok
Bio.SeqIO.PhdIO docstring test ... ok
Bio.SeqIO.QualityIO docstring test ... ok
Bio.SeqIO.SffIO docstring test ... ok
Bio.SeqFeature docstring test ... ok
Bio.SeqRecord docstring test ... ok
Bio.SeqUtils docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils/__init__.py:560: BiopythonDeprecationWarning: The quick_FASTA_reader has been deprecated and will be removed in a future release of Biopython. Please try function SimpleFastaParser from Bio.SeqIO.FastaIO instead.
  "instead.", BiopythonDeprecationWarning)
ok
Bio.SeqUtils.MeltingTemp docstring test ... ok
Bio.Sequencing.Applications._Novoalign docstring test ... ok
Bio.Sequencing.Applications._bwa docstring test ... ok
Bio.Sequencing.Applications._samtools docstring test ... ok
Bio.Wise docstring test ... ok
Bio.Wise.psw docstring test ... ok
Bio.Affy.CelFile docstring test ... ok
Bio.Statistics.lowess docstring test ... ok
Bio.PDB.Polypeptide docstring test ... ok
Bio.PDB.Selection docstring test ... ok
----------------------------------------------------------------------
Ran 223 tests in 1464.364 seconds

Skipping any tests requiring internet access
Python version: 2.7.10+ (default, Oct 10 2015, 09:11:24) 
[GCC 5.2.1 20151003]
Operating system: posix linux2
	pybuild --test -i python{version} -p "3.5 3.4" --test --system=custom "--test-args=set -e; \\\
                             mkdir -p {build_dir}/home; \\\
                             mkdir -p {build_dir}/Doc/examples; \\\
                             cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\
                             cp -a Doc/Tutorial {build_dir}/Doc; \\\
                             cp -a Doc/examples {build_dir}/Doc; \\\
                             cp -a Tests {build_dir}; \\\
                             cd {build_dir}/Tests; \\\
                             env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline" --dir .
I: pybuild base:170: set -e; \
                             mkdir -p /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/home; \
                             mkdir -p /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Doc/examples; \
                             cp -a Doc/Tutorial.tex /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Doc; \
                             cp -a Doc/Tutorial /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Doc; \
                             cp -a Doc/examples /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Doc; \
                             cp -a Tests /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build; \
                             cd /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Tests; \
                             env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/home python3.5 run_tests.py --offline
test_Ace ... ok
test_AlignIO ... ok
test_AlignIO_ClustalIO ... ok
test_AlignIO_EmbossIO ... ok
test_AlignIO_FastaIO ... ok
test_AlignIO_PhylipIO ... ok
test_AlignIO_convert ... ok
test_Application ... ok
test_BioSQL_mysql_connector ... skipping. Install mysql.connector if you want to use mysql with BioSQL 
test_BioSQL_sqlite3 ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/BioSQL/Loader.py:810: BiopythonWarning: order location operators are not fully supported
  % feature.location_operator, BiopythonWarning)
ok
test_CAPS ... ok
test_CelFile ... ok
test_Chi2 ... ok
test_ClustalOmega_tool ... ok
test_Clustalw_tool ... ok
test_Cluster ... ok
test_CodonTable ... ok
test_CodonUsage ... ok
test_ColorSpiral ... ok
test_Compass ... ok
test_Consensus ... ok
test_Crystal ... ok
test_DSSP_tool ... ok
test_Dialign_tool ... ok
test_DocSQL ... ok
test_Emboss ... ok
test_EmbossPrimer ... ok
test_Entrez ... ok
test_Entrez_online ... skipping. internet not available
test_Enzyme ... ok
test_FSSP ... ok
test_Fasttree_tool ... ok
test_File ... ok
test_GACrossover ... ok
test_GAMutation ... ok
test_GAOrganism ... ok
test_GAQueens ... ok
test_GARepair ... ok
test_GASelection ... ok
test_GenBank ... ok
test_GenBank_unittest ... ok
test_GenomeDiagram ... ok
test_GraphicsBitmaps ... FAIL
test_GraphicsChromosome ... ok
test_GraphicsDistribution ... ok
test_GraphicsGeneral ... ok
test_HMMCasino ... ok
test_HMMGeneral ... ok
test_KDTree ... ok
test_KEGG ... ok
test_KEGG_online ... skipping. internet not available
test_KGML_graphics ... skipping. Install Pillow or its predecessorPIL (Python Imaging Library) if you want to use bitmaps from KGML.
test_KGML_nographics ... ok
test_KeyWList ... ok
test_Location ... ok
test_LogisticRegression ... ok
test_MMCIF ... ok
test_Mafft_tool ... ok
test_MarkovModel ... ok
test_Medline ... ok
test_Motif ... ok
test_Muscle_tool ... ok
test_NCBITextParser ... ok
test_NCBIXML ... ok
test_NCBI_BLAST_tools ... ok
test_NCBI_qblast ... skipping. internet not available
test_NNExclusiveOr ... ok
test_NNGene ... ok
test_NNGeneral ... ok
test_Nexus ... ok
test_PAML_baseml ... ok
test_PAML_codeml ... ok
test_PAML_yn00 ... ok
test_PDB ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element ''
  warnings.warn(msg, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element ''
  warnings.warn(msg, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA  ' differ only in spaces at line 17.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA  ) with given element ''
  warnings.warn(msg, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue <Residue ARG het=  resseq=2 icode= > at line 21.
Exception ignored.
Some atoms or residues may be missing in the data structure.
  % message, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33.

  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43.
Exception ignored.
Some atoms or residues may be missing in the data structure.
  % message, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue <Residue HOH het=W resseq=67 icode= > at line 822.
Exception ignored.
Some atoms or residues may be missing in the data structure.
  % message, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element ''
  warnings.warn(msg, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element ''
  warnings.warn(msg, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA  ' differ only in spaces at line 17.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA  ) with given element ''
  warnings.warn(msg, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue <Residue ARG het=  resseq=2 icode= > at line 21.
Exception ignored.
Some atoms or residues may be missing in the data structure.
  % message, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33.

  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43.
Exception ignored.
Some atoms or residues may be missing in the data structure.
  % message, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue <Residue HOH het=W resseq=67 icode= > at line 822.
Exception ignored.
Some atoms or residues may be missing in the data structure.
  % message, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element ''
  warnings.warn(msg, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element ''
  warnings.warn(msg, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA  ' differ only in spaces at line 17.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA  ) with given element ''
  warnings.warn(msg, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue <Residue ARG het=  resseq=2 icode= > at line 21.
Exception ignored.
Some atoms or residues may be missing in the data structure.
  % message, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33.

  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43.
Exception ignored.
Some atoms or residues may be missing in the data structure.
  % message, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue <Residue HOH het=W resseq=67 icode= > at line 822.
Exception ignored.
Some atoms or residues may be missing in the data structure.
  % message, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element ''
  warnings.warn(msg, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element ''
  warnings.warn(msg, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA  ' differ only in spaces at line 17.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA  ) with given element ''
  warnings.warn(msg, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue <Residue ARG het=  resseq=2 icode= > at line 21.
Exception ignored.
Some atoms or residues may be missing in the data structure.
  % message, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33.

  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43.
Exception ignored.
Some atoms or residues may be missing in the data structure.
  % message, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue <Residue HOH het=W resseq=67 icode= > at line 822.
Exception ignored.
Some atoms or residues may be missing in the data structure.
  % message, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element ''
  warnings.warn(msg, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element ''
  warnings.warn(msg, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA  ' differ only in spaces at line 17.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA  ) with given element ''
  warnings.warn(msg, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue <Residue ARG het=  resseq=2 icode= > at line 21.
Exception ignored.
Some atoms or residues may be missing in the data structure.
  % message, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33.

  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43.
Exception ignored.
Some atoms or residues may be missing in the data structure.
  % message, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue <Residue HOH het=W resseq=67 icode= > at line 822.
Exception ignored.
Some atoms or residues may be missing in the data structure.
  % message, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element ''
  warnings.warn(msg, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element ''
  warnings.warn(msg, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA  ' differ only in spaces at line 17.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA  ) with given element ''
  warnings.warn(msg, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue <Residue ARG het=  resseq=2 icode= > at line 21.
Exception ignored.
Some atoms or residues may be missing in the data structure.
  % message, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33.

  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43.
Exception ignored.
Some atoms or residues may be missing in the data structure.
  % message, PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646.
  PDBConstructionWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue <Residue HOH het=W resseq=67 icode= > at line 822.
Exception ignored.
Some atoms or residues may be missing in the data structure.
  % message, PDBConstructionWarning)
ok
test_PDB_KDTree ... ok
test_ParserSupport ... ok
test_Pathway ... ok
test_Phd ... ok
test_Phylo ... ok
test_PhyloXML ... ok
test_Phylo_CDAO ... ok
test_Phylo_NeXML ... ok
test_Phylo_depend ... ok
test_PopGen_FDist_nodepend ... ok
test_PopGen_FastSimCoal ... skipping. Install fastsimcoal if you want to use Bio.PopGen.SimCoal.Controller.FastSimCoalController.
test_PopGen_GenePop_nodepend ... ok
test_PopGen_SimCoal_nodepend ... ok
test_Prank_tool ... ok
test_Probcons_tool ... ok
test_ProtParam ... ok
test_Restriction ... ok
test_SCOP_Astral ... ok
test_SCOP_Cla ... ok
test_SCOP_Des ... ok
test_SCOP_Dom ... ok
test_SCOP_Hie ... ok
test_SCOP_Raf ... ok
test_SCOP_Residues ... ok
test_SCOP_Scop ... ok
test_SCOP_online ... skipping. internet not available
test_SVDSuperimposer ... ok
test_SearchIO_blast_tab ... ok
test_SearchIO_blast_tab_index ... ok
test_SearchIO_blast_text ... ok
test_SearchIO_blast_xml ... ok
test_SearchIO_blast_xml_index ... ok
test_SearchIO_blat_psl ... ok
test_SearchIO_blat_psl_index ... ok
test_SearchIO_exonerate ... ok
test_SearchIO_exonerate_text_index ... ok
test_SearchIO_exonerate_vulgar_index ... ok
test_SearchIO_fasta_m10 ... ok
test_SearchIO_fasta_m10_index ... ok
test_SearchIO_hmmer2_text ... ok
test_SearchIO_hmmer2_text_index ... ok
test_SearchIO_hmmer3_domtab ... ok
test_SearchIO_hmmer3_domtab_index ... ok
test_SearchIO_hmmer3_tab ... ok
test_SearchIO_hmmer3_tab_index ... ok
test_SearchIO_hmmer3_text ... ok
test_SearchIO_hmmer3_text_index ... ok
test_SearchIO_model ... ok
test_SearchIO_write ... ok
test_SeqIO ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GenBank/__init__.py:1017: BiopythonParserWarning: Dropping bond qualifier in feature location
  warnings.warn("Dropping bond qualifier in feature location", BiopythonParserWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/InsdcIO.py:438: BiopythonWarning: Annotation 'flavin-adenine-dinucleotide-dependent-d-erythronate-4-phosphate-dehydrogena' too long for '' line
  BiopythonWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/QualityIO.py:699: BiopythonWarning: Data loss - max PHRED quality 62 in Illumina FASTQ
  BiopythonWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/QualityIO.py:793: BiopythonWarning: Data loss - max Solexa quality 62 in Solexa FASTQ
  BiopythonWarning)
ok
test_SeqIO_AbiIO ... ok
test_SeqIO_FastaIO ... ok
test_SeqIO_Insdc ... ok
test_SeqIO_PdbIO ... ok
test_SeqIO_QualityIO ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/QualityIO.py:793: BiopythonWarning: Data loss - max Solexa quality 62 in Solexa FASTQ
  BiopythonWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/QualityIO.py:699: BiopythonWarning: Data loss - max PHRED quality 62 in Illumina FASTQ
  BiopythonWarning)
ok
test_SeqIO_SeqXML ... ok
test_SeqIO_convert ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/QualityIO.py:699: BiopythonWarning: Data loss - max PHRED quality 62 in Illumina FASTQ
  BiopythonWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/QualityIO.py:793: BiopythonWarning: Data loss - max Solexa quality 62 in Solexa FASTQ
  BiopythonWarning)
ok
test_SeqIO_features ... ok
test_SeqIO_index ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/_index.py:111: BiopythonParserWarning: Could not parse the SFF index: Unknown magic number b'.diy' in SFF index header:
b'.diy1.00'
  BiopythonParserWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/_index.py:111: BiopythonParserWarning: Could not parse the SFF index: Unknown magic number b'.diy' in SFF index header:
b'.diy1.00'
  BiopythonParserWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/_index.py:111: BiopythonParserWarning: Could not parse the SFF index: Unknown magic number b'.diy' in SFF index header:
b'.diy1.00'
  BiopythonParserWarning)
ok
test_SeqIO_online ... skipping. internet not available
test_SeqIO_write ... ok
test_SeqRecord ... ok
test_SeqUtils ... ok
test_Seq_objs ... ok
test_SffIO ... ok
test_SubsMat ... ok
test_SwissProt ... ok
test_TCoffee_tool ... ok
test_TogoWS ... skipping. internet not available
test_TreeConstruction ... ok
test_Tutorial ... ok
test_UniGene ... ok
test_Uniprot ... ok
test_Wise ... ok
test_align ... ok
test_bgzf ... ok
test_codonalign ... ok
test_geo ... ok
test_kNN ... ok
test_lowess ... ok
test_motifs ... ok
test_pairwise2 ... ok
test_phyml_tool ... ok
test_prodoc ... ok
test_prosite1 ... ok
test_prosite2 ... ok
test_psw ... ok
test_py3k ... ok
test_seq ... ok
test_translate ... ok
test_trie ... ok
Bio.Align docstring test ... ok
Bio.Align.Generic docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Generic.py:55: BiopythonDeprecationWarning: With the introduction of the MultipleSeqAlignment class in Bio.Align, this base class is deprecated and is likely to be removed in a future release of Biopython.
  warnings.warn("With the introduction of the MultipleSeqAlignment class in Bio.Align, this base class is deprecated and is likely to be removed in a future release of Biopython.", Bio.BiopythonDeprecationWarning)
ok
Bio.Align.Applications._Clustalw docstring test ... ok
Bio.Align.Applications._ClustalOmega docstring test ... ok
Bio.Align.Applications._MSAProbs docstring test ... ok
Bio.Align.Applications._Mafft docstring test ... ok
Bio.Align.Applications._Muscle docstring test ... ok
Bio.Align.Applications._Probcons docstring test ... ok
Bio.Align.Applications._Prank docstring test ... ok
Bio.Align.Applications._TCoffee docstring test ... ok
Bio.AlignIO docstring test ... ok
Bio.AlignIO.StockholmIO docstring test ... ok
Bio.Alphabet docstring test ... ok
Bio.Application docstring test ... ok
Bio.bgzf docstring test ... ok
Bio.codonalign docstring test ... ok
Bio.Blast.Applications docstring test ... ok
Bio.Emboss.Applications docstring test ... ok
Bio.GenBank docstring test ... ok
Bio.KEGG.Compound docstring test ... ok
Bio.KEGG.Enzyme docstring test ... ok
Bio.NMR.xpktools docstring test ... ok
Bio.Motif docstring test ... ok
Bio.motifs docstring test ... ok
Bio.motifs.applications._alignace docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/applications/_alignace.py:54: BiopythonDeprecationWarning: The AlignACE application wrapper is deprecated and
                      is likely to be removed in a future release of Biopython,
                      since an up to date version of the AlignACE software
                      cannot be obtained anymore. If you have a copy of
                      AlignACE 4, please consider contacting the Biopython
                      developers.
  developers.""", BiopythonDeprecationWarning)
/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/applications/_alignace.py:122: BiopythonDeprecationWarning: The CompareACE application wrapper is deprecated and
                      is likely to be removed in a future release of Biopython,
                      since an up to date version of the AlignACE software
                      cannot be obtained anymore. If you have a copy of
                      AlignACE 4, please consider contacting the Biopython
                      developers.
  developers.""", BiopythonDeprecationWarning)
ok
Bio.motifs.applications._xxmotif docstring test ... ok
Bio.pairwise2 docstring test ... ok
Bio.Phylo.Applications._Raxml docstring test ... ok
Bio.SearchIO docstring test ... ok
Bio.SearchIO._model docstring test ... ok
Bio.SearchIO._model.query docstring test ... ok
Bio.SearchIO._model.hit docstring test ... ok
Bio.SearchIO._model.hsp docstring test ... ok
Bio.SearchIO.BlastIO docstring test ... ok
Bio.SearchIO.HmmerIO docstring test ... ok
Bio.SearchIO.FastaIO docstring test ... ok
Bio.SearchIO.BlatIO docstring test ... ok
Bio.SearchIO.ExonerateIO docstring test ... ok
Bio.SeqIO docstring test ... ok
Bio.SeqIO.FastaIO docstring test ... ok
Bio.SeqIO.AceIO docstring test ... ok
Bio.SeqIO.PhdIO docstring test ... ok
Bio.SeqIO.QualityIO docstring test ... ok
Bio.SeqIO.SffIO docstring test ... ok
Bio.SeqFeature docstring test ... ok
Bio.SeqRecord docstring test ... ok
Bio.SeqUtils docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils/__init__.py:560: BiopythonDeprecationWarning: The quick_FASTA_reader has been deprecated and will be removed in a future release of Biopython. Please try function SimpleFastaParser from Bio.SeqIO.FastaIO instead.
  "instead.", BiopythonDeprecationWarning)
ok
Bio.SeqUtils.MeltingTemp docstring test ... ok
Bio.Sequencing.Applications._Novoalign docstring test ... ok
Bio.Sequencing.Applications._bwa docstring test ... ok
Bio.Sequencing.Applications._samtools docstring test ... ok
Bio.Wise docstring test ... ok
Bio.Wise.psw docstring test ... ok
Bio.Affy.CelFile docstring test ... ok
Bio.Statistics.lowess docstring test ... ok
Bio.PDB.Polypeptide docstring test ... ok
Bio.PDB.Selection docstring test ... ok
======================================================================
ERROR: test_GraphicsBitmaps (unittest.loader._FailedTest)
----------------------------------------------------------------------
ImportError: Failed to import test module: test_GraphicsBitmaps
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/reportlab/graphics/renderPM.py", line 28, in <module>
    from reportlab.graphics import _renderPM
ImportError: cannot import name '_renderPM'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Tests/test_GraphicsBitmaps.py", line 31, in <module>
    from reportlab.graphics import renderPM
  File "/usr/lib/python3/dist-packages/reportlab/graphics/renderPM.py", line 32, in <module>
    "see https://www.reportlab.com/software/opensource/rl-addons/"))
ImportError: No module named _renderPM
it may be the wrong version or badly installed!

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/lib/python3.5/unittest/loader.py", line 153, in loadTestsFromName
    module = __import__(module_name)
  File "/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Tests/test_GraphicsBitmaps.py", line 34, in <module>
    "Install ReportLab's renderPM module if you want to create "
Bio.MissingPythonDependencyError: Install ReportLab's renderPM module if you want to create bitmaps with Bio.Graphics.


----------------------------------------------------------------------
Ran 222 tests in 1634.989 seconds

FAILED (failures = 1)
Skipping any tests requiring internet access
Python version: 3.5.0+ (default, Oct 20 2015, 02:21:13) 
[GCC 5.2.1 20151010]
Operating system: posix linux
E: pybuild pybuild:262: test: plugin custom failed with: exit code=1: set -e; \
                             mkdir -p /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/home; \
                             mkdir -p /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Doc/examples; \
                             cp -a Doc/Tutorial.tex /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Doc; \
                             cp -a Doc/Tutorial /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Doc; \
                             cp -a Doc/examples /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Doc; \
                             cp -a Tests /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build; \
                             cd /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Tests; \
                             env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/home python3.5 run_tests.py --offline
dh_auto_test: pybuild --test -i python{version} -p 3.5 3.4 --test --system=custom --test-args=set -e; \
                             mkdir -p {build_dir}/home; \
                             mkdir -p {build_dir}/Doc/examples; \
                             cp -a Doc/Tutorial.tex {build_dir}/Doc; \
                             cp -a Doc/Tutorial {build_dir}/Doc; \
                             cp -a Doc/examples {build_dir}/Doc; \
                             cp -a Tests {build_dir}; \
                             cd {build_dir}/Tests; \
                             env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline --dir . returned exit code 13
make[1]: *** [override_dh_auto_test] Error 25
debian/rules:67: recipe for target 'override_dh_auto_test' failed
make[1]: Leaving directory '/«BUILDDIR»/python-biopython-1.65+dfsg'
make: *** [build-arch] Error 2
debian/rules:49: recipe for target 'build-arch' failed
dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2
────────────────────────────────────────────────────────────────────────────────
Build finished at 20151027-1204

Finished
────────

E: Build failure (dpkg-buildpackage died)

┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use

┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Build Architecture: armhf
Build-Space: 193020
Build-Time: 3275
Distribution: stretch-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 1306
Job: python-biopython_1.65+dfsg-3
Machine Architecture: armhf
Package: python-biopython
Package-Time: 4648
Source-Version: 1.65+dfsg-3
Space: 193020
Status: attempted
Version: 1.65+dfsg-3
────────────────────────────────────────────────────────────────────────────────
Finished at 20151027-1204
Build needed 01:17:28, 193020k disc space
Raspbian Package Auto-Building

Build log for python-biopython (1.65+dfsg-3) on armhf
