python-biom-format →
2.1.12-3 →
armhf → 2022-12-06 19:38:49
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| python-biom-format 2.1.12-3 (armhf) Tue, 06 Dec 2022 19:06:38 +0000 |
+==============================================================================+
Package: python-biom-format
Version: 2.1.12-3
Source Version: 2.1.12-3
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-4526197d-379d-46bd-b2f4-2175ca7e7c15' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/python-biom-format-dN0DUt/resolver-wuDT95' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.5 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.3 MB]
Fetched 27.8 MB in 13s (2085 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-biom-format' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-biom-format.git
Please use:
git clone https://salsa.debian.org/med-team/python-biom-format.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 8567 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main python-biom-format 2.1.12-3 (dsc) [2452 B]
Get:2 http://172.17.4.1/private bookworm-staging/main python-biom-format 2.1.12-3 (tar) [8554 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main python-biom-format 2.1.12-3 (diff) [10.9 kB]
Fetched 8567 kB in 1s (7884 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-biom-format-dN0DUt/python-biom-format-2.1.12' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-biom-format-dN0DUt' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest, python3-pytest-cov, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-python, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest, python3-pytest-cov, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [475 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [549 B]
Fetched 1981 B in 0s (37.0 kB/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap libperl5.34 perl-modules-5.34
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bash-completion blt bsdextrautils
bsdutils ca-certificates cpp-12 cython3 debhelper dh-autoreconf dh-python
dh-strip-nondeterminism docutils-common dwz file fontconfig-config
fonts-dejavu-core fonts-lyx g++-12 gcc-12 gcc-12-base gettext gettext-base
groff-base help2man intltool-debian libaec0 libarchive-zip-perl libasan8
libatomic1 libblas3 libblkid1 libbrotli1 libbsd0 libcc1-0 libcurl4
libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
libgcc-12-dev libgcc-s1 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3
libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libicu72 libimagequant0 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-hotkeys libjs-jquery-isonscreen
libjs-jquery-metadata libjs-jquery-tablesorter
libjs-jquery-throttle-debounce libjs-jquery-ui libjs-sphinxdoc
libjs-underscore libjson-perl liblapack3 liblbfgsb0 liblcms2-2 liblerc4
liblocale-gettext-perl liblzf1 libmagic-mgc libmagic1 libmd0 libmount1
libmpdec3 libnghttp2-14 libopenjp2-7 libpipeline1 libpng16-16 libpsl5
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10
libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libqhull-r8.0
libraqm0 librtmp1 libsmartcols1 libssh2-1 libssl3 libstdc++-12-dev
libstdc++6 libsub-override-perl libsz2 libtcl8.6 libtiff5 libtk8.6 libtool
libubsan1 libuchardet0 libuuid1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6
libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1
libxslt1.1 libxss1 m4 man-db media-types mount openssl po-debconf
python-babel-localedata python-matplotlib-data python3 python3-alabaster
python3-all python3-all-dev python3-appdirs python3-attr python3-babel
python3-brotli python3-certifi python3-chardet python3-charset-normalizer
python3-click python3-colorama python3-coverage python3-cycler
python3-dateutil python3-decorator python3-dev python3-distutils
python3-docutils python3-fonttools python3-fs python3-future python3-h5py
python3-h5py-serial python3-idna python3-imagesize
python3-importlib-metadata python3-iniconfig python3-jinja2
python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4
python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools
python3-mpmath python3-numpy python3-packaging python3-pandas
python3-pandas-lib python3-pil python3-pil.imagetk python3-pkg-resources
python3-pluggy python3-py python3-pygments python3-pyparsing python3-pytest
python3-pytest-cov python3-requests python3-roman python3-scipy
python3-setuptools python3-six python3-snowballstemmer python3-sphinx
python3-sympy python3-tk python3-tomli python3-tz python3-ufolib2
python3-unicodedata2 python3-urllib3 python3-zipp python3.10 python3.10-dev
python3.10-minimal sphinx-common tk8.6-blt2.5 ucf unicode-data util-linux
util-linux-extra x11-common xml-core zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc blt-demo gcc-12-locales
cpp-12-doc cython-doc dh-make flit python3-build python3-installer
gcc-12-doc gettext-doc libasprintf-dev libgettextpo-dev groff
low-memory-monitor libjs-jquery-ui-docs liblcms2-utils cryptsetup-bin
libstdc++-12-doc tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler
gcj-jdk m4-doc apparmor less www-browser nfs-common libmail-box-perl
python3-doc python3-venv python-attr-doc python-coverage-doc
python-cycler-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine
texlive-lang-french texlive-latex-base texlive-latex-recommended
python-future-doc python-h5py-doc python-jinja2-doc python-lxml-doc
cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0
inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi
python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip
python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc
python3-gmpy2 gfortran python-numpy-doc python-pandas-doc
python3-statsmodels python-pil-doc subversion python-pygments-doc
ttf-bitstream-vera python-pyparsing-doc python3-cryptography python3-openssl
python3-socks python-requests-doc python-scipy-doc python-setuptools-doc
python3-stemmer fonts-freefont-otf imagemagick-6.q16 latexmk libjs-mathjax
python3-sphinx-rtd-theme sphinx-doc tex-gyre texlive-fonts-recommended
texlive-plain-generic texlive-fonts-extra python-sympy-doc tix
python3-tk-dbg python3.10-venv python3.10-doc binfmt-support dosfstools kbd
util-linux-locales
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common libjson-xs-perl publicsuffix libltdl-dev
uuid-runtime libmail-sendmail-perl libpaper-utils python3-bs4
python3-html5lib python3-bottleneck python3-numexpr python3-odf
python3-openpyxl python3-xlwt python3-tables python3-olefile isympy-common
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bash-completion blt bsdextrautils
ca-certificates cython3 debhelper dh-autoreconf dh-python
dh-strip-nondeterminism docutils-common dwz file fontconfig-config
fonts-dejavu-core fonts-lyx gettext gettext-base groff-base help2man
intltool-debian libaec0 libarchive-zip-perl libblas3 libbrotli1 libbsd0
libcurl4 libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-103-1
libhdf5-hl-100 libicu72 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery
libjs-jquery-hotkeys libjs-jquery-isonscreen libjs-jquery-metadata
libjs-jquery-tablesorter libjs-jquery-throttle-debounce libjs-jquery-ui
libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblbfgsb0
liblcms2-2 liblerc4 liblocale-gettext-perl liblzf1 libmagic-mgc libmagic1
libmd0 libmpdec3 libnghttp2-14 libopenjp2-7 libpipeline1 libpng16-16 libpsl5
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10
libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libqhull-r8.0
libraqm0 librtmp1 libssh2-1 libsub-override-perl libsz2 libtcl8.6 libtiff5
libtk8.6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6
libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1
libxslt1.1 libxss1 m4 man-db media-types openssl po-debconf
python-babel-localedata python-matplotlib-data python3 python3-alabaster
python3-all python3-all-dev python3-appdirs python3-attr python3-babel
python3-brotli python3-certifi python3-chardet python3-charset-normalizer
python3-click python3-colorama python3-coverage python3-cycler
python3-dateutil python3-decorator python3-dev python3-distutils
python3-docutils python3-fonttools python3-fs python3-future python3-h5py
python3-h5py-serial python3-idna python3-imagesize
python3-importlib-metadata python3-iniconfig python3-jinja2
python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4
python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools
python3-mpmath python3-numpy python3-packaging python3-pandas
python3-pandas-lib python3-pil python3-pil.imagetk python3-pkg-resources
python3-pluggy python3-py python3-pygments python3-pyparsing python3-pytest
python3-pytest-cov python3-requests python3-roman python3-scipy
python3-setuptools python3-six python3-snowballstemmer python3-sphinx
python3-sympy python3-tk python3-tomli python3-tz python3-ufolib2
python3-unicodedata2 python3-urllib3 python3-zipp python3.10 python3.10-dev
python3.10-minimal sbuild-build-depends-main-dummy sphinx-common
tk8.6-blt2.5 ucf unicode-data x11-common xml-core zlib1g-dev
The following packages will be upgraded:
bsdutils cpp-12 g++-12 gcc-12 gcc-12-base libasan8 libatomic1 libblkid1
libcc1-0 libgcc-12-dev libgcc-s1 libgomp1 libmount1 libsmartcols1 libssl3
libstdc++-12-dev libstdc++6 libubsan1 libuuid1 mount util-linux
util-linux-extra
22 upgraded, 191 newly installed, 0 to remove and 58 not upgraded.
Need to get 146 MB of archives.
After this operation, 469 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [968 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf bsdutils armhf 1:2.38.1-4 [83.9 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libsmartcols1 armhf 2.38.1-4 [91.6 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf util-linux-extra armhf 2.38.1-4 [98.1 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf util-linux armhf 2.38.1-4 [1062 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf liblocale-gettext-perl armhf 1.07-4+b3 [14.6 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf mount armhf 2.38.1-4 [126 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 12.2.0-9+rpi1 [32.2 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 12.2.0-9+rpi1 [95.4 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 12.2.0-9+rpi1 [8224 B]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libasan8 armhf 12.2.0-9+rpi1 [2089 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 12.2.0-9+rpi1 [861 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12.2.0-9+rpi1 [37.2 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 12.2.0-9+rpi1 [504 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf g++-12 armhf 12.2.0-9+rpi1 [7913 kB]
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Get:20 http://172.17.4.1/private bookworm-staging/main armhf gcc-12 armhf 12.2.0-9+rpi1 [14.2 MB]
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Get:26 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.8-3 [1478 kB]
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Get:31 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.8-3 [1597 kB]
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Get:35 http://172.17.4.1/private bookworm-staging/main armhf libblkid1 armhf 2.38.1-4 [131 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libmount1 armhf 2.38.1-4 [144 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-4 [78.8 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
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Get:47 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
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Get:50 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-10 [495 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-1 [906 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.39-2 [258 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [352 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config armhf 2.13.1-4.5 [281 kB]
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Get:68 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.8.1-2 [704 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
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Get:76 http://172.17.4.1/private bookworm-staging/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf cython3 armhf 0.29.32-2 [1218 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.1 [80.8 kB]
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Get:80 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-2 [19.4 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-2 [8556 B]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14+20220924-2 [93.1 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1 [570 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-10 [1203 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.1 [941 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.10.8-1 [77.3 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.10.8-1 [139 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220819+rpi1 [114 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf docutils-common all 0.17.1+dfsg-3 [113 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf fonts-lyx all 2.3.6.1-1 [206 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf help2man armhf 1.49.2 [202 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libaec0 armhf 1.0.6-1 [19.3 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-2 [109 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.50.0-1 [65.0 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.86.0-2 [322 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.5.0-1 [130 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-9+rpi1 [238 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.74.1-2 [1214 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 5.2.0-2+b1 [1832 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libsz2 armhf 1.0.6-1 [7452 B]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-103-1 armhf 1.10.8+repack-4 [1221 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-100 armhf 1.10.8+repack-4 [64.5 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libimagequant0 armhf 2.17.0-1 [28.0 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-metadata all 12-3 [7660 B]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [184 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-2 [116 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.5.0-4 [142 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libjson-perl all 4.10000-1 [87.5 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-2 [1587 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-11 [24.3 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.13.1-1 [125 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-2 [133 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf liblzf1 armhf 3.6-3 [9268 B]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libopenjp2-7 armhf 2.5.0-1 [165 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10 armhf 3.10.8-3 [1458 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4.1 [183 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-dev armhf 3.10.8-3 [2935 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.10.6-1 [22.0 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.10.6-1 [1068 B]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libqhull-r8.0 armhf 2020.2-5 [221 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf libraqm0 armhf 0.7.0-4 [9388 B]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2+b1 [237 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-6 [278 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libwebpdemux2 armhf 1.2.2-2+b1 [95.5 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf libwebpmux3 armhf 1.2.2-2+b1 [103 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libxslt1.1 armhf 1.1.35-1 [221 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf python-babel-localedata all 2.10.3-1 [5615 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf python-matplotlib-data all 3.5.2-4 [2725 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf python3-alabaster all 0.7.12-1 [20.8 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.10.6-1 [1060 B]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf python3.10-dev armhf 3.10.8-3 [509 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.10.6-1 [25.4 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf python3-all-dev armhf 3.10.6-1 [1068 B]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf python3-appdirs all 1.4.4-3 [13.0 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf python3-attr all 22.1.0-1 [64.1 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 65.5.0-1 [278 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf python3-tz all 2022.6-1 [31.8 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf python3-babel all 2.10.3-1 [103 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf python3-brotli armhf 1.0.9-2+b2 [278 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf python3-certifi all 2022.9.24-1 [153 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf python3-chardet all 4.0.0-2 [99.1 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf python3-charset-normalizer all 3.0.1-2 [49.3 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf python3-colorama all 0.4.5-3 [28.5 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf python3-more-itertools all 8.10.0-2 [53.0 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf python3-zipp all 1.0.0-5 [6264 B]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf python3-importlib-metadata all 4.12.0-1 [24.9 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf python3-click all 8.0.3-1 [91.9 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf python3-coverage armhf 6.2+dfsg1-2+b2 [151 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf python3-cycler all 0.11.0-1 [8020 B]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf python3-six all 1.16.0-4 [17.5 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf python3-dateutil all 2.8.2-1 [78.2 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf python3-decorator all 5.1.1-2 [16.5 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf python3-roman all 3.3-2 [9808 B]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf python3-docutils all 0.17.1+dfsg-3 [380 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.21.5-2 [3409 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf python3-scipy armhf 1.8.1-14+rpi1 [12.9 MB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf python3-ufolib2 all 0.13.1+dfsg1-1 [32.0 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf python3-mpmath all 1.2.1-2 [418 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf python3-sympy all 1.11.1-1 [4358 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf python3-fs all 2.4.16-2 [95.2 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf python3-lxml armhf 4.9.1-1 [959 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf python3-lz4 armhf 4.0.2+dfsg-1 [23.9 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf python3-unicodedata2 armhf 14.0.0+ds2-1 [298 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf unicode-data all 15.0.0-1 [7984 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf python3-fonttools armhf 4.37.4-1 [983 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf python3-future all 0.18.2-6 [348 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf python3-h5py-serial armhf 3.7.0-3 [710 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf python3-h5py all 3.7.0-3 [9900 B]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf python3-idna all 3.3-1 [39.4 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf python3-imagesize all 1.4.1-1 [6688 B]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf python3-markupsafe armhf 2.1.1-1 [13.6 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf python3-jinja2 all 3.0.3-2 [121 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf python3-kiwisolver armhf 1.3.2-1+b1 [52.1 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf python3-pil armhf 9.2.0-1.1 [427 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf python3-tk armhf 3.10.8-1 [101 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf python3-pil.imagetk armhf 9.2.0-1.1 [71.8 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf python3-pyparsing all 3.0.7-3 [136 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf python3-packaging all 21.3-1.1 [34.2 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf python3-matplotlib armhf 3.5.2-4 [6479 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas-lib armhf 1.3.5+dfsg-6 [2906 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas all 1.3.5+dfsg-6 [2646 kB]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf python3-pluggy all 1.0.0+repack-1 [19.7 kB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf python3-py all 1.11.0-1 [89.2 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf python3-pygments all 2.13.0+dfsg-1 [767 kB]
Get:205 http://172.17.4.1/private bookworm-staging/main armhf python3-tomli all 2.0.1-2 [17.9 kB]
Get:206 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest all 7.1.2-4 [218 kB]
Get:207 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest-cov all 4.0.0-1 [26.1 kB]
Get:208 http://172.17.4.1/private bookworm-staging/main armhf python3-urllib3 all 1.26.12-1 [117 kB]
Get:209 http://172.17.4.1/private bookworm-staging/main armhf python3-requests all 2.28.1+dfsg-1 [67.9 kB]
Get:210 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 65.5.0-1 [519 kB]
Get:211 http://172.17.4.1/private bookworm-staging/main armhf python3-snowballstemmer all 2.2.0-2 [57.8 kB]
Get:212 http://172.17.4.1/private bookworm-staging/main armhf sphinx-common all 4.5.0-4 [638 kB]
Get:213 http://172.17.4.1/private bookworm-staging/main armhf python3-sphinx all 4.5.0-4 [540 kB]
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No schema files found: doing nothing.
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invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of restart.
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
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Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
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Setting up python3 (3.10.6-1) ...
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Not building database; man-db/auto-update is not 'true'.
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update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.39-6+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-9+rpi1 gcc-12_12.2.0-9+rpi1 libc6-dev_2.35-2+rpi1 libstdc++-12-dev_12.2.0-9+rpi1 libstdc++6_12.2.0-9+rpi1 linux-libc-dev_5.19.6-1+rpi1
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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
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Hash: SHA512
Format: 3.0 (quilt)
Source: python-biom-format
Binary: python3-biom-format, python-biom-format-doc
Architecture: any all
Version: 2.1.12-3
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://biom-format.org/
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/python-biom-format
Vcs-Git: https://salsa.debian.org/med-team/python-biom-format.git
Testsuite: autopkgtest, autopkgtest-pkg-python
Build-Depends: debhelper-compat (= 13), dh-python, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest <!nocheck>, python3-pytest-cov <!nocheck>
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python3-biom-format deb python optional arch=any
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dpkg-source: info: extracting python-biom-format in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-biom-format_2.1.12.orig.tar.xz
dpkg-source: info: unpacking python-biom-format_2.1.12-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying ignore_local_dist-packages.patch
dpkg-source: info: applying no-web-adds.patch
dpkg-source: info: applying fix_future_import.patch
dpkg-source: info: applying enable_sloppy_sphinx_build.patch
dpkg-source: info: applying sphinx_1.6.patch
dpkg-source: info: applying sphinx.ext.pngmath.patch
dpkg-source: info: applying posix_shell.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=f89ee6850c51463faed427366eb0b008
JOURNAL_STREAM=8:31299
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-4526197d-379d-46bd-b2f4-2175ca7e7c15
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c40970
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package python-biom-format
dpkg-buildpackage: info: source version 2.1.12-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3,bash-completion,sphinxdoc --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
install -m0755 -d /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/home
pybuild --clean -i python{version} -p 3.10
I: pybuild base:240: python3.10 setup.py clean
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_filter.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_subsample.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_transform.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
[2/3] Cythonizing biom/_subsample.pyx
[3/3] Cythonizing biom/_transform.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.10' does not exist -- can't clean it
rm -rf .pybuild/
find . -name \*.pyc -exec rm {} \;
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars ./biom/_filter.c ./biom/_subsample.c ./biom/_transform.c debian/files
rm -fr -- debian/python3-biom-format/ debian/tmp/ debian/python-biom-format-doc/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules binary-arch
dh binary-arch --with python3,bash-completion,sphinxdoc --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
install -m0755 -d /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/home
pybuild --configure -i python{version} -p 3.10
I: pybuild base:240: python3.10 setup.py config
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_filter.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_subsample.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_transform.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
[2/3] Cythonizing biom/_subsample.pyx
[3/3] Cythonizing biom/_transform.pyx
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# arch
USE_CYTHON=true dh_auto_build
pybuild --build -i python{version} -p 3.10
I: pybuild base:240: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/err.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/exception.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/parse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/test_err.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/test_util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/long_lines.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/test_parse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/test_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_subsetter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_ids.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_summarizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/installation_informer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_converter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/metadata_exporter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/metadata_adder.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_validator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_head.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_normalizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/uc_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_add_metadata.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_converter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_uc_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_summarize_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_subset_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_validate_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_normalizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_show_install_info.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
running egg_info
creating biom_format.egg-info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
writing manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
adding license file 'COPYING.txt'
writing manifest file 'biom_format.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biom.assets' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'biom.assets' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'biom.assets' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'biom.assets' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biom.tests.bench_tables' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'biom.tests.bench_tables' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'biom.tests.bench_tables' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'biom.tests.bench_tables' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biom.tests.test_cli.test_data' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'biom.tests.test_cli.test_data' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'biom.tests.test_cli.test_data' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'biom.tests.test_cli.test_data' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
copying biom/_filter.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/_subsample.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/_transform.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/assets
copying biom/assets/exercise_api.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/assets
copying biom/assets/exercise_cli.sh -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/assets
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/test_data/bad_table.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/bad_table.txt.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/empty.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/no-contents.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data
running build_ext
building 'biom._filter' extension
creating build
creating build/temp.linux-armhf-cpython-310
creating build/temp.linux-armhf-cpython-310/biom
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c biom/_filter.c -o build/temp.linux-armhf-cpython-310/biom/_filter.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_filter.c:768:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-310/biom/_filter.o -L/usr/lib/arm-linux-gnueabihf -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_filter.cpython-310-arm-linux-gnueabihf.so
building 'biom._transform' extension
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c biom/_transform.c -o build/temp.linux-armhf-cpython-310/biom/_transform.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_transform.c:768:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-310/biom/_transform.o -L/usr/lib/arm-linux-gnueabihf -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_transform.cpython-310-arm-linux-gnueabihf.so
building 'biom._subsample' extension
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c biom/_subsample.c -o build/temp.linux-armhf-cpython-310/biom/_subsample.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_subsample.c:768:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-310/biom/_subsample.o -L/usr/lib/arm-linux-gnueabihf -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_subsample.cpython-310-arm-linux-gnueabihf.so
# indep:
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html
Running Sphinx v4.5.0
making output directory... done
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
Failed to import biom.table.
Possible hints:
* ModuleNotFoundError: No module named 'biom._filter'
* KeyError: 'biom'
Failed to import biom.
Possible hints:
* ModuleNotFoundError: No module named 'biom._filter'
* KeyError: 'biom'
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 12 source files that are out of date
updating environment: [new config] 12 added, 0 changed, 0 removed
reading sources... [ 8%] BIOM_LICENSE
reading sources... [ 16%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 41%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 66%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 91%] documentation/table_objects
reading sources... [100%] index
WARNING: autodoc: failed to import module 'biom'; the following exception was raised:
No module named 'biom._filter'
WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised:
No module named 'biom._filter'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 8%] BIOM_LICENSE
writing output... [ 16%] documentation/adding_metadata
writing output... [ 25%] documentation/biom_conversion
writing output... [ 33%] documentation/biom_format
writing output... [ 41%] documentation/format_versions/biom-1.0
writing output... [ 50%] documentation/format_versions/biom-2.0
writing output... [ 58%] documentation/format_versions/biom-2.1
writing output... [ 66%] documentation/index
writing output... [ 75%] documentation/quick_usage_examples
writing output... [ 83%] documentation/summarizing_biom_tables
writing output... [ 91%] documentation/table_objects
writing output... [100%] index
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated
generating indices... done
writing additional pages... search done
copying images... [100%] _static/biom-format.png
copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 6 warnings.
The HTML pages are in build/html.
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b man doc build/man
Running Sphinx v4.5.0
making output directory... done
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
Failed to import biom.table.
Possible hints:
* ModuleNotFoundError: No module named 'biom._filter'
* KeyError: 'biom'
Failed to import biom.
Possible hints:
* ModuleNotFoundError: No module named 'biom._filter'
* KeyError: 'biom'
building [mo]: targets for 0 po files that are out of date
building [man]: all manpages
updating environment: [new config] 12 added, 0 changed, 0 removed
reading sources... [ 8%] BIOM_LICENSE
reading sources... [ 16%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 41%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 66%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 91%] documentation/table_objects
reading sources... [100%] index
WARNING: autodoc: failed to import module 'biom'; the following exception was raised:
No module named 'biom._filter'
WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised:
No module named 'biom._filter'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
writing... biom.1 { documentation/index documentation/biom_format documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 documentation/format_versions/biom-2.1 documentation/quick_usage_examples documentation/table_objects documentation/biom_conversion documentation/adding_metadata documentation/summarizing_biom_tables BIOM_LICENSE } done
build succeeded, 2 warnings.
The manual pages are in build/man.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a -O--buildsystem=pybuild
pybuild --test --test-pytest -i python{version} -p 3.10
I: pybuild pybuild:300: cp -r /<<PKGBUILDDIR>>/examples /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build
I: pybuild base:240: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build; python3.10 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.10.8, pytest-7.1.2, pluggy-1.0.0+repack
rootdir: /<<PKGBUILDDIR>>, configfile: pytest.ini
plugins: cov-4.0.0
collected 366 items
biom/tests/test_err.py ..................... [ 5%]
biom/tests/test_parse.py .......................... [ 12%]
biom/tests/test_table.py ............................................... [ 25%]
..sss................................................................... [ 45%]
....sss................................................................. [ 65%]
.............................................................. [ 81%]
biom/tests/test_util.py ..s................ [ 87%]
biom/tests/test_cli/test_add_metadata.py .... [ 88%]
biom/tests/test_cli/test_show_install_info.py . [ 88%]
biom/tests/test_cli/test_subset_table.py ..... [ 89%]
biom/tests/test_cli/test_summarize_table.py .. [ 90%]
biom/tests/test_cli/test_table_converter.py ...... [ 92%]
biom/tests/test_cli/test_table_normalizer.py . [ 92%]
biom/tests/test_cli/test_uc_processor.py ...... [ 93%]
biom/tests/test_cli/test_validate_table.py ...................... [100%]
=============================== warnings summary ===============================
biom/tests/test_table.py:19
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py:19: FutureWarning: pandas.util.testing is deprecated. Use the functions in the public API at pandas.testing instead.
import pandas.util.testing as pdt
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_both
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_obs
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_sample
/usr/lib/python3/dist-packages/scipy/sparse/_index.py:146: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
self._set_arrayXarray(i, j, x)
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_observation_subset
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_sample_subset
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_observations_hdf5
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_samples_hdf5
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/table.py:4196: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
data = np.hstack(h5_data[start:end]
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_observation_subset
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_sample_subset
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_observations_hdf5
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_samples_hdf5
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/table.py:4198: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
indices = np.hstack(h5_indices[start:end]
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::TableTests::test_nnz_issue_727
/usr/lib/python3/dist-packages/scipy/sparse/_index.py:103: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
self._set_intXint(row, col, x.flat[0])
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:88: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('Num samples: ' + locale.format('%d', num_samples,
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:90: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('Num observations: ' + locale.format('%d',
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:95: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('Total count: ' + locale.format('%d', total_count,
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:110: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Min: ' + locale.format('%1.3f', min_counts, grouping=True))
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:111: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Max: ' + locale.format('%1.3f', max_counts, grouping=True))
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:112: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Median: ' + locale.format('%1.3f', median_counts,
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:114: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Mean: ' + locale.format('%1.3f', mean_counts,
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:116: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Std. dev.: ' + locale.format('%1.3f',
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py: 18 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:143: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('%s: ' % k + locale.format('%1.3f', v, grouping=True))
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================= 359 passed, 7 skipped, 46 warnings in 20.46s =================
rm -fr -- /tmp/dh-xdg-rundir-0yOupdsu
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
rm -f -- debian/python3-biom-format.substvars
rm -fr -- debian/.debhelper/generated/python3-biom-format/ debian/python3-biom-format/ debian/tmp/
rm -f debian/python3-biom-format.debhelper.log
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install
pybuild --install -i python{version} -p 3.10 --dest-dir /<<PKGBUILDDIR>>/debian/tmp
I: pybuild base:240: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-biom-format
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running egg_info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
adding license file 'COPYING.txt'
writing manifest file 'biom_format.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biom.assets' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'biom.assets' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'biom.assets' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'biom.assets' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biom.tests.bench_tables' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'biom.tests.bench_tables' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'biom.tests.bench_tables' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'biom.tests.bench_tables' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biom.tests.test_cli.test_data' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'biom.tests.test_cli.test_data' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'biom.tests.test_cli.test_data' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'biom.tests.test_cli.test_data' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-biom-format
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/util.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/err.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/exception.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/parse.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_err.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_util.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/long_lines.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_parse.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/bad_table.txt -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/bad_table.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/empty.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/no-contents.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/test.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/test.json -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/test.json.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_add_metadata.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_table_converter.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_uc_processor.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_subset_table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_validate_table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_table_normalizer.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_show_install_info.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data/test.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data/test.json -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_data
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/__init__.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_add_metadata.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_show_install_info.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_subset_table.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_summarize_table.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_table_converter.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_table_normalizer.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_uc_processor.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_validate_table.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/__pycache__/__init__.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/__pycache__/test_err.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/__pycache__/test_parse.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/__pycache__/long_lines.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/__pycache__/test_table.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/__pycache__/test_util.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_subsetter.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_ids.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/util.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/installation_informer.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_converter.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/metadata_exporter.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/metadata_adder.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_validator.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_head.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_normalizer.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/uc_processor.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/__init__.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/table_summarizer.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/metadata_adder.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/util.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/metadata_exporter.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/table_converter.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/installation_informer.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/table_subsetter.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/table_normalizer.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/table_head.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/table_ids.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/table_validator.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/uc_processor.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_filter.pyx -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_subsample.pyx -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_transform.pyx -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/assets
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/assets/exercise_api.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/assets
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/assets/exercise_cli.sh -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/assets
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_filter.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_transform.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_subsample.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/__pycache__/__init__.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/__pycache__/table.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/__pycache__/exception.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/__pycache__/util.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/__pycache__/err.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/__pycache__/parse.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/examples/min_sparse_otu_table_hdf5.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/examples/rich_sparse_otu_table_hdf5.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/examples/rich_sparse_otu_table.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/examples/obs_md.txt -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/examples/sam_md.txt -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/examples/min_sparse_otu_table.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/examples
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/util.py to util.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/err.py to err.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/table.py to table.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/exception.py to exception.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/parse.py to parse.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_err.py to test_err.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_util.py to test_util.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/long_lines.py to long_lines.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_parse.py to test_parse.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_table.py to test_table.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/table_subsetter.py to table_subsetter.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/table_ids.py to table_ids.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/util.py to util.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/table_summarizer.py to table_summarizer.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/installation_informer.py to installation_informer.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/table_converter.py to table_converter.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/metadata_exporter.py to metadata_exporter.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/metadata_adder.py to metadata_adder.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/table_validator.py to table_validator.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/table_head.py to table_head.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/table_normalizer.py to table_normalizer.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/uc_processor.py to uc_processor.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/assets/exercise_api.py to exercise_api.cpython-310.pyc
running install_egg_info
Copying biom_format.egg-info to /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom_format-2.1.12.egg-info
Skipping SOURCES.txt
running install_scripts
Installing biom script to /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/bin
I: pybuild pybuild:326: dh_numpy3
mv debian/python3-biom-format.substvars.new debian/python3-biom-format.substvars
find debian/python3-biom-format -name .coverage -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
install -m0755 -d debian/.debhelper/generated/python3-biom-format
cp --reflink=auto -a ./debian/README.test debian/python3-biom-format/usr/share/doc/python3-biom-format
cp --reflink=auto -a ./debian/tests/run-unit-test debian/python3-biom-format/usr/share/doc/python3-biom-format
chmod -R u\+rw,go=rX debian/python3-biom-format/usr/share/doc
install -p -m0644 debian/copyright debian/python3-biom-format/usr/share/doc/python3-biom-format/copyright
install -m0755 -d debian/.debhelper/generated/python-biom-format-doc
dh_sphinxdoc -a -O--buildsystem=pybuild
dh_sphinxdoc: warning: Sphinx documentation not found
dh_installchangelogs -a -O--buildsystem=pybuild
install -p -m0644 debian/.debhelper/generated/python3-biom-format/dh_installchangelogs.dch.trimmed debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog.Debian
install -p -m0644 ./ChangeLog.md debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog
rm -f debian/python3-biom-format.debhelper.log
debian/rules override_dh_installexamples
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installexamples
cp --reflink=auto -a ./examples/min_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/min_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/obs_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/rich_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/rich_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/sam_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
find debian -name "*.c" -delete
find debian -name "*.pyx" -delete
# move tests from Python3 package to examples package
if [ ! -d biom/tests ] ; then \
mv `find debian/python*biom-format -name tests -type d` biom ; \
else \
find debian/python*biom-format -name tests -type d | xargs rm -rf ; \
fi
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installman -a -O--buildsystem=pybuild
install -p -m0644 ./debian/biom.1 debian/python3-biom-format/usr/share/man/man1/biom.1
man-recode --to-code UTF-8 --suffix .dh-new debian/python3-biom-format/usr/share/man/man1/biom.1
mv debian/python3-biom-format/usr/share/man/man1/biom.1.dh-new debian/python3-biom-format/usr/share/man/man1/biom.1
chmod 0644 -- debian/python3-biom-format/usr/share/man/man1/biom.1
dh_python3 -a -O--buildsystem=pybuild
D: dh_python3 dh_python3:175: version: 5.20220819+rpi1
D: dh_python3 dh_python3:176: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild']
D: dh_python3 dh_python3:177: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=True, package=None, no_package=None, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild'])
D: dh_python3 dh_python3:178: supported Python versions: 3.10 (default=3.10)
D: dh_python3 debhelper:141: skipping package: python-biom-format-doc
D: dh_python3 debhelper:172: source=python-biom-format, binary packages=['python3-biom-format']
D: dh_python3 dh_python3:196: processing package python3-biom-format...
D: dh_python3 fs:52: moving files from debian/python3-biom-format/usr/lib/python3.10/dist-packages to debian/python3-biom-format/usr/lib/python3/dist-packages/
D: dh_python3 fs:399: package python3-biom-format details = {'requires.txt': {'debian/python3-biom-format/usr/lib/python3/dist-packages/biom_format-2.1.12.egg-info/requires.txt'}, 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.10')}, 'ext_no_version': set()}
D: dh_python3 depends:117: generating dependencies for package python3-biom-format
D: dh_python3 pydist:172: trying to find dependency for click (python=None)
D: dh_python3 pydist:172: trying to find dependency for cython (python=None)
D: dh_python3 pydist:172: trying to find dependency for cython>=0.29 (python=None)
D: dh_python3 pydist:172: trying to find dependency for h5py (python=None)
D: dh_python3 pydist:172: trying to find dependency for numpy>=1.9.2 (python=None)
D: dh_python3 pydist:172: trying to find dependency for pandas>=0.20.0 (python=None)
D: dh_python3 pydist:172: trying to find dependency for scipy>=1.3.1 (python=None)
D: dh_python3 depends:281: D={'python3-h5py-serial', 'cython3', 'python3:any', 'python3-click', 'python3-numpy', 'python3-pandas', 'python3 (>= 3.10~)', 'python3-scipy', 'python3 (<< 3.11)'}; R=[]; S=[]; E=[], B=[]; RT=[]
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
cd debian/python3-biom-format
chmod a-x usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1
gzip -9nf usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1
cd '/<<PKGBUILDDIR>>'
rm -f debian/python3-biom-format.debhelper.log
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_fixperms
find debian/python3-biom-format ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/python3-biom-format/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biom-format/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-biom-format/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/python3-biom-format/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-biom-format -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-biom-format/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
find debian/python3-biom-format/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
find debian -name exercise_cli.sh -exec chmod +x \{\} \;
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dwz -mdebian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug -- debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-310-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-310-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-310-arm-linux-gnueabihf.so
objcopy --compress-debug-sections debian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug
chmod 0644 -- debian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug
dh_strip -a -O--buildsystem=pybuild
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-310-arm-linux-gnueabihf.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/73/86f7b79e12af8f0c42731e9b9180b2962eed31.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/73/86f7b79e12af8f0c42731e9b9180b2962eed31.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-310-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/73/86f7b79e12af8f0c42731e9b9180b2962eed31.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-310-arm-linux-gnueabihf.so
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-310-arm-linux-gnueabihf.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/00/f6bafc2d448dfa4721eb12d293601d983e5617.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/00/f6bafc2d448dfa4721eb12d293601d983e5617.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-310-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/00/f6bafc2d448dfa4721eb12d293601d983e5617.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-310-arm-linux-gnueabihf.so
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-310-arm-linux-gnueabihf.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/93/17b2b778e745b29ecd8185170403b1e9b67c54.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/93/17b2b778e745b29ecd8185170403b1e9b67c54.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-310-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/93/17b2b778e745b29ecd8185170403b1e9b67c54.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-310-arm-linux-gnueabihf.so
cp --reflink=auto -a debian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz
rm -fr debian/python3-biom-format/usr/lib/debug/.dwz
rmdir -p --ignore-fail-on-non-empty debian/python3-biom-format/usr/lib/debug
ln -s python3-biom-format debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc/python3-biom-format-dbgsym
dh_makeshlibs -a -O--buildsystem=pybuild
rm -f debian/python3-biom-format/DEBIAN/shlibs
dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps -Tdebian/python3-biom-format.substvars debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-310-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-310-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-310-arm-linux-gnueabihf.so
dh_installdeb -a -O--buildsystem=pybuild
printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/postinst
cat debian/python3-biom-format.postinst.debhelper >> debian/python3-biom-format/DEBIAN/postinst
chmod 0755 -- debian/python3-biom-format/DEBIAN/postinst
printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/prerm
cat debian/python3-biom-format.prerm.debhelper >> debian/python3-biom-format/DEBIAN/prerm
chmod 0755 -- debian/python3-biom-format/DEBIAN/prerm
dh_gencontrol -a -O--buildsystem=pybuild
echo misc:Depends= >> debian/python3-biom-format.substvars
echo misc:Pre-Depends= >> debian/python3-biom-format.substvars
dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -Pdebian/.debhelper/python3-biom-format/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=python3-biom-format-dbgsym "-DDepends=python3-biom-format (= \${binary:Version})" "-DDescription=debug symbols for python3-biom-format" "-DBuild-Ids=00f6bafc2d448dfa4721eb12d293601d983e5617 7386f7b79e12af8f0c42731e9b9180b2962eed31 9317b2b778e745b29ecd8185170403b1e9b67c54" -DSection=debug -UMulti-Arch -UReplaces -UBreaks
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/control
dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -Pdebian/python3-biom-format
chmod 0644 -- debian/python3-biom-format/DEBIAN/control
dh_md5sums -a -O--buildsystem=pybuild
cd debian/python3-biom-format >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/python3-biom-format/DEBIAN/md5sums
cd debian/.debhelper/python3-biom-format/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/md5sums
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb --root-owner-group --build debian/python3-biom-format ..
dpkg-deb --root-owner-group --build debian/.debhelper/python3-biom-format/dbgsym-root ..
dpkg-deb: building package 'python3-biom-format' in '../python3-biom-format_2.1.12-3_armhf.deb'.
dpkg-deb: building package 'python3-biom-format-dbgsym' in '../python3-biom-format-dbgsym_2.1.12-3_armhf.deb'.
dpkg-genbuildinfo --build=any -O../python-biom-format_2.1.12-3_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> -O../python-biom-format_2.1.12-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-12-06T19:38:40Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-biom-format_2.1.12-3_armhf.changes:
------------------------------------------
Format: 1.8
Date: Sat, 03 Dec 2022 23:45:03 +0530
Source: python-biom-format
Binary: python3-biom-format python3-biom-format-dbgsym
Architecture: armhf
Version: 2.1.12-3
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Mohammed Bilal <mdbilal@disroot.org>
Description:
python3-biom-format - Biological Observation Matrix (BIOM) format (Python 3)
Closes: 1018464
Changes:
python-biom-format (2.1.12-3) unstable; urgency=medium
.
* Team upload.
* d/control: remove python3-nose (Closes: #1018464)
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Files:
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486262a171881610bf2a91f03ff22603 214992 debug optional python3-biom-format-dbgsym_2.1.12-3_armhf.deb
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: python-biom-format
Binary: python3-biom-format python3-biom-format-dbgsym
Architecture: armhf
Version: 2.1.12-3
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Tue, 06 Dec 2022 19:38:39 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.71-2),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-10),
autotools-dev (= 20220109.1),
base-files (= 12.3+rpi1),
base-passwd (= 3.6.1),
bash (= 5.2~rc2-2),
bash-completion (= 1:2.11-6),
binutils (= 2.39-6+rpi1),
binutils-arm-linux-gnueabihf (= 2.39-6+rpi1),
binutils-common (= 2.39-6+rpi1),
blt (= 2.5.3+dfsg-4.1),
bsdextrautils (= 2.38.1-4),
bsdutils (= 1:2.38.1-4),
build-essential (= 12.9),
bzip2 (= 1.0.8-5+b2),
ca-certificates (= 20211016),
coreutils (= 9.1-1),
cpp (= 4:12.2.0-1+rpi1),
cpp-12 (= 12.2.0-9+rpi1),
cython3 (= 0.29.32-2),
dash (= 0.5.11+git20210903+057cd650a4ed-9),
debconf (= 1.5.79),
debhelper (= 13.11.1),
debianutils (= 5.7-0.3),
dh-autoreconf (= 20),
dh-python (= 5.20220819+rpi1),
dh-strip-nondeterminism (= 1.13.0-2),
diffutils (= 1:3.8-1),
docutils-common (= 0.17.1+dfsg-3),
dpkg (= 1.21.9+rpi1),
dpkg-dev (= 1.21.9+rpi1),
dwz (= 0.14+20220924-2),
file (= 1:5.41-4),
findutils (= 4.9.0-3),
fontconfig-config (= 2.13.1-4.5),
fonts-dejavu-core (= 2.37-2),
fonts-lyx (= 2.3.6.1-1),
g++ (= 4:12.2.0-1+rpi1),
g++-12 (= 12.2.0-9+rpi1),
gcc (= 4:12.2.0-1+rpi1),
gcc-12 (= 12.2.0-9+rpi1),
gcc-12-base (= 12.2.0-9+rpi1),
gettext (= 0.21-10),
gettext-base (= 0.21-10),
grep (= 3.7-1),
groff-base (= 1.22.4-9),
gzip (= 1.12-1),
help2man (= 1.49.2),
hostname (= 3.23),
init-system-helpers (= 1.64),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.1-1),
libaec0 (= 1.0.6-1),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 12.2.0-9+rpi1),
libatomic1 (= 12.2.0-9+rpi1),
libattr1 (= 1:2.5.1-1),
libaudit-common (= 1:3.0.7-1.1),
libaudit1 (= 1:3.0.7-1.1),
libbinutils (= 2.39-6+rpi1),
libblas3 (= 3.10.1-2),
libblkid1 (= 2.38.1-4),
libbrotli1 (= 1.0.9-2+b2),
libbsd0 (= 0.11.7-1),
libbz2-1.0 (= 1.0.8-5+b2),
libc-bin (= 2.35-2+rpi1),
libc-dev-bin (= 2.35-2+rpi1),
libc6 (= 2.35-2+rpi1),
libc6-dev (= 2.35-2+rpi1),
libcap-ng0 (= 0.8.3-1),
libcap2 (= 1:2.44-1),
libcc1-0 (= 12.2.0-9+rpi1),
libcom-err2 (= 1.46.6~rc1-1),
libcrypt-dev (= 1:4.4.28-2),
libcrypt1 (= 1:4.4.28-2),
libctf-nobfd0 (= 2.39-6+rpi1),
libctf0 (= 2.39-6+rpi1),
libcurl4 (= 7.86.0-2),
libdb5.3 (= 5.3.28+dfsg1-0.10),
libdebconfclient0 (= 0.264),
libdebhelper-perl (= 13.11.1),
libdeflate0 (= 1.14-1),
libdpkg-perl (= 1.21.9+rpi1),
libelf1 (= 0.187-2+rpi2),
libexpat1 (= 2.5.0-1),
libexpat1-dev (= 2.5.0-1),
libffi8 (= 3.4.2-4),
libfile-stripnondeterminism-perl (= 1.13.0-2),
libfontconfig1 (= 2.13.1-4.5),
libfreetype6 (= 2.12.1+dfsg-3),
libfribidi0 (= 1.0.8-2.1),
libgcc-12-dev (= 12.2.0-9+rpi1),
libgcc-s1 (= 12.2.0-9+rpi1),
libgcrypt20 (= 1.10.1-2+b2),
libgdbm-compat4 (= 1.23-3),
libgdbm6 (= 1.23-3),
libgfortran5 (= 12.2.0-9+rpi1),
libglib2.0-0 (= 2.74.1-2),
libgmp10 (= 2:6.2.1+dfsg1-1.1),
libgnutls30 (= 3.7.8-2),
libgomp1 (= 12.2.0-9+rpi1),
libgpg-error0 (= 1.45-2),
libgraphite2-3 (= 1.3.14-1),
libgssapi-krb5-2 (= 1.20-1),
libharfbuzz0b (= 5.2.0-2+b1),
libhdf5-103-1 (= 1.10.8+repack-4),
libhdf5-hl-100 (= 1.10.8+repack-4),
libhogweed6 (= 3.8.1-2),
libicu72 (= 72.1-3),
libidn2-0 (= 2.3.3-1),
libimagequant0 (= 2.17.0-1),
libisl23 (= 0.25-1),
libjbig0 (= 2.1-3.1+b2),
libjpeg62-turbo (= 1:2.1.2-1),
libjs-jquery (= 3.6.1+dfsg+~3.5.14-1),
libjs-jquery-hotkeys (= 0~20130707+git2d51e3a9+dfsg-2.1),
libjs-jquery-isonscreen (= 1.2.0-1.1),
libjs-jquery-metadata (= 12-3),
libjs-jquery-tablesorter (= 1:2.31.3+dfsg1-3),
libjs-jquery-throttle-debounce (= 1.1+dfsg.1-2),
libjs-jquery-ui (= 1.13.2+dfsg-1),
libjs-sphinxdoc (= 4.5.0-4),
libjs-underscore (= 1.13.4~dfsg+~1.11.4-2),
libjson-perl (= 4.10000-1),
libk5crypto3 (= 1.20-1),
libkeyutils1 (= 1.6.3-1),
libkrb5-3 (= 1.20-1),
libkrb5support0 (= 1.20-1),
liblapack3 (= 3.10.1-2),
liblbfgsb0 (= 3.0+dfsg.3-11),
liblcms2-2 (= 2.13.1-1),
libldap-2.5-0 (= 2.5.13+dfsg-2+rpi1),
liblerc4 (= 4.0.0+ds-2),
liblocale-gettext-perl (= 1.07-4+b3),
liblz4-1 (= 1.9.4-1+rpi1),
liblzf1 (= 3.6-3),
liblzma5 (= 5.2.5-2.1),
libmagic-mgc (= 1:5.41-4),
libmagic1 (= 1:5.41-4),
libmd0 (= 1.0.4-2),
libmount1 (= 2.38.1-4),
libmpc3 (= 1.2.1-2),
libmpdec3 (= 2.5.1-2+rpi1),
libmpfr6 (= 4.1.0-3),
libncursesw6 (= 6.3+20220423-2),
libnettle8 (= 3.8.1-2),
libnghttp2-14 (= 1.50.0-1),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libopenjp2-7 (= 2.5.0-1),
libp11-kit0 (= 0.24.1-1),
libpam-modules (= 1.5.2-5),
libpam-modules-bin (= 1.5.2-5),
libpam-runtime (= 1.5.2-5),
libpam0g (= 1.5.2-5),
libpcre2-8-0 (= 10.40-1+b2),
libpcre3 (= 2:8.39-14),
libperl5.36 (= 5.36.0-4),
libpipeline1 (= 1.5.7-1),
libpng16-16 (= 1.6.39-2),
libpsl5 (= 0.21.0-1.2),
libpython3-all-dev (= 3.10.6-1),
libpython3-dev (= 3.10.6-1),
libpython3-stdlib (= 3.10.6-1),
libpython3.10 (= 3.10.8-3),
libpython3.10-dev (= 3.10.8-3),
libpython3.10-minimal (= 3.10.8-3),
libpython3.10-stdlib (= 3.10.8-3),
libqhull-r8.0 (= 2020.2-5),
libraqm0 (= 0.7.0-4),
libreadline8 (= 8.2-1),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
libsasl2-2 (= 2.1.28+dfsg-8),
libsasl2-modules-db (= 2.1.28+dfsg-8),
libseccomp2 (= 2.5.4-1+rpi1),
libselinux1 (= 3.4-1),
libsmartcols1 (= 2.38.1-4),
libsqlite3-0 (= 3.39.4-1),
libssh2-1 (= 1.10.0-3+b1),
libssl3 (= 3.0.7-1),
libstdc++-12-dev (= 12.2.0-9+rpi1),
libstdc++6 (= 12.2.0-9+rpi1),
libsub-override-perl (= 0.09-4),
libsystemd0 (= 251.5-1+rpi1),
libsz2 (= 1.0.6-1),
libtasn1-6 (= 4.19.0-2),
libtcl8.6 (= 8.6.13+dfsg-1),
libtiff5 (= 4.4.0-6),
libtinfo6 (= 6.3+20220423-2),
libtirpc-common (= 1.3.3+ds-1),
libtirpc-dev (= 1.3.3+ds-1),
libtirpc3 (= 1.3.3+ds-1),
libtk8.6 (= 8.6.13-1),
libtool (= 2.4.7-5),
libubsan1 (= 12.2.0-9+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 251.5-1+rpi1),
libunistring2 (= 1.0-2),
libuuid1 (= 2.38.1-4),
libwebp7 (= 1.2.2-2+b1),
libwebpdemux2 (= 1.2.2-2+b1),
libwebpmux3 (= 1.2.2-2+b1),
libx11-6 (= 2:1.8.1-2),
libx11-data (= 2:1.8.1-2),
libxau6 (= 1:1.0.9-1),
libxcb1 (= 1.15-1),
libxdmcp6 (= 1:1.1.2-3),
libxext6 (= 2:1.3.4-1),
libxft2 (= 2.3.6-1),
libxml2 (= 2.9.14+dfsg-1.1),
libxrender1 (= 1:0.9.10-1.1),
libxslt1.1 (= 1.1.35-1),
libxss1 (= 1:1.2.3-1),
libzstd1 (= 1.5.2+dfsg-1),
linux-libc-dev (= 5.19.6-1+rpi1),
login (= 1:4.12.3+dfsg1-1),
lsb-base (= 11.4+rpi1),
m4 (= 1.4.19-1),
make (= 4.3-4.1),
man-db (= 2.11.1-1),
mawk (= 1.3.4.20200120-3.1),
media-types (= 8.0.0),
ncurses-base (= 6.3+20220423-2),
ncurses-bin (= 6.3+20220423-2),
openssl (= 3.0.7-1),
patch (= 2.7.6-7),
perl (= 5.36.0-4),
perl-base (= 5.36.0-4),
perl-modules-5.36 (= 5.36.0-4),
po-debconf (= 1.0.21+nmu1),
python-babel-localedata (= 2.10.3-1),
python-matplotlib-data (= 3.5.2-4),
python3 (= 3.10.6-1),
python3-alabaster (= 0.7.12-1),
python3-all (= 3.10.6-1),
python3-all-dev (= 3.10.6-1),
python3-appdirs (= 1.4.4-3),
python3-attr (= 22.1.0-1),
python3-babel (= 2.10.3-1),
python3-brotli (= 1.0.9-2+b2),
python3-certifi (= 2022.9.24-1),
python3-chardet (= 4.0.0-2),
python3-charset-normalizer (= 3.0.1-2),
python3-click (= 8.0.3-1),
python3-colorama (= 0.4.5-3),
python3-coverage (= 6.2+dfsg1-2+b2),
python3-cycler (= 0.11.0-1),
python3-dateutil (= 2.8.2-1),
python3-decorator (= 5.1.1-2),
python3-dev (= 3.10.6-1),
python3-distutils (= 3.10.8-1),
python3-docutils (= 0.17.1+dfsg-3),
python3-fonttools (= 4.37.4-1),
python3-fs (= 2.4.16-2),
python3-future (= 0.18.2-6),
python3-h5py (= 3.7.0-3),
python3-h5py-serial (= 3.7.0-3),
python3-idna (= 3.3-1),
python3-imagesize (= 1.4.1-1),
python3-importlib-metadata (= 4.12.0-1),
python3-iniconfig (= 1.1.1-2),
python3-jinja2 (= 3.0.3-2),
python3-kiwisolver (= 1.3.2-1+b1),
python3-lib2to3 (= 3.10.8-1),
python3-lxml (= 4.9.1-1),
python3-lz4 (= 4.0.2+dfsg-1),
python3-markupsafe (= 2.1.1-1),
python3-matplotlib (= 3.5.2-4),
python3-minimal (= 3.10.6-1),
python3-more-itertools (= 8.10.0-2),
python3-mpmath (= 1.2.1-2),
python3-numpy (= 1:1.21.5-2),
python3-packaging (= 21.3-1.1),
python3-pandas (= 1.3.5+dfsg-6),
python3-pandas-lib (= 1.3.5+dfsg-6),
python3-pil (= 9.2.0-1.1),
python3-pil.imagetk (= 9.2.0-1.1),
python3-pkg-resources (= 65.5.0-1),
python3-pluggy (= 1.0.0+repack-1),
python3-py (= 1.11.0-1),
python3-pygments (= 2.13.0+dfsg-1),
python3-pyparsing (= 3.0.7-3),
python3-pytest (= 7.1.2-4),
python3-pytest-cov (= 4.0.0-1),
python3-requests (= 2.28.1+dfsg-1),
python3-roman (= 3.3-2),
python3-scipy (= 1.8.1-14+rpi1),
python3-setuptools (= 65.5.0-1),
python3-six (= 1.16.0-4),
python3-snowballstemmer (= 2.2.0-2),
python3-sphinx (= 4.5.0-4),
python3-sympy (= 1.11.1-1),
python3-tk (= 3.10.8-1),
python3-tomli (= 2.0.1-2),
python3-tz (= 2022.6-1),
python3-ufolib2 (= 0.13.1+dfsg1-1),
python3-unicodedata2 (= 14.0.0+ds2-1),
python3-urllib3 (= 1.26.12-1),
python3-zipp (= 1.0.0-5),
python3.10 (= 3.10.8-3),
python3.10-dev (= 3.10.8-3),
python3.10-minimal (= 3.10.8-3),
readline-common (= 8.2-1),
rpcsvc-proto (= 1.4.2-4),
sed (= 4.8-1),
sensible-utils (= 0.0.17),
sgml-base (= 1.31),
sphinx-common (= 4.5.0-4),
sysvinit-utils (= 3.05-6),
tar (= 1.34+dfsg-1),
tk8.6-blt2.5 (= 2.5.3+dfsg-4.1),
tzdata (= 2022d-1),
ucf (= 3.0043),
unicode-data (= 15.0.0-1),
util-linux (= 2.38.1-4),
util-linux-extra (= 2.38.1-4),
x11-common (= 1:7.7+23),
xml-core (= 0.18+nmu1),
xz-utils (= 5.2.5-2.1),
zlib1g (= 1:1.2.11.dfsg-4.1),
zlib1g-dev (= 1:1.2.11.dfsg-4.1)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1670091303"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-biom-format-dbgsym_2.1.12-3_armhf.deb
---------------------------------------------
new Debian package, version 2.0.
size 214992 bytes: control archive=704 bytes.
501 bytes, 12 lines control
417 bytes, 4 lines md5sums
Package: python3-biom-format-dbgsym
Source: python-biom-format
Version: 2.1.12-3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 255
Depends: python3-biom-format (= 2.1.12-3)
Section: debug
Priority: optional
Description: debug symbols for python3-biom-format
Build-Ids: 00f6bafc2d448dfa4721eb12d293601d983e5617 7386f7b79e12af8f0c42731e9b9180b2962eed31 9317b2b778e745b29ecd8185170403b1e9b67c54
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drwxr-xr-x root/root 0 2022-12-03 18:15 ./usr/lib/debug/
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drwxr-xr-x root/root 0 2022-12-03 18:15 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2022-12-03 18:15 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 12088 2022-12-03 18:15 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug
drwxr-xr-x root/root 0 2022-12-03 18:15 ./usr/share/
drwxr-xr-x root/root 0 2022-12-03 18:15 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-12-03 18:15 ./usr/share/doc/python3-biom-format-dbgsym -> python3-biom-format
python3-biom-format_2.1.12-3_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 121184 bytes: control archive=2760 bytes.
1952 bytes, 36 lines control
4400 bytes, 48 lines md5sums
285 bytes, 12 lines * postinst #!/bin/sh
398 bytes, 12 lines * prerm #!/bin/sh
Package: python3-biom-format
Source: python-biom-format
Version: 2.1.12-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 747
Depends: python3-h5py, python3-numpy (>= 1:1.20.0), python3-numpy-abi9, cython3, python3 (<< 3.11), python3 (>= 3.10~), python3-click, python3-h5py-serial, python3-pandas, python3-scipy, python3:any, libc6 (>= 2.4)
Suggests: python-biom-format-doc
Breaks: biom-format-tools (<< 2.1.7+dfsg-3)
Replaces: biom-format-tools (<< 2.1.7+dfsg-3)
Provides: biom-format-tools
Section: python
Priority: optional
Homepage: https://biom-format.org/
Description: Biological Observation Matrix (BIOM) format (Python 3)
The BIOM file format (canonically pronounced biome) is designed to be a
general-use format for representing biological sample by observation
contingency tables. BIOM is a recognized standard for the Earth
Microbiome Project and is a Genomics Standards Consortium candidate
project.
.
The BIOM format is designed for general use in broad areas of
comparative -omics. For example, in marker-gene surveys, the primary use
of this format is to represent OTU tables: the observations in this case
are OTUs and the matrix contains counts corresponding to the number of
times each OTU is observed in each sample. With respect to metagenome
data, this format would be used to represent metagenome tables: the
observations in this case might correspond to SEED subsystems, and the
matrix would contain counts corresponding to the number of times each
subsystem is observed in each metagenome. Similarly, with respect to
genome data, this format may be used to represent a set of genomes: the
observations in this case again might correspond to SEED subsystems, and
the counts would correspond to the number of times each subsystem is
observed in each genome.
.
This package provides the BIOM format library for the Python 3 interpreter.
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-rw-r--r-- root/root 8810 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/cli/table_converter.py
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-rw-r--r-- root/root 5350 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/cli/table_summarizer.py
-rw-r--r-- root/root 20209 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/cli/table_validator.py
-rw-r--r-- root/root 2908 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/cli/uc_processor.py
-rw-r--r-- root/root 1030 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/cli/util.py
-rw-r--r-- root/root 14322 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/err.py
-rw-r--r-- root/root 1408 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/exception.py
-rw-r--r-- root/root 22454 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/parse.py
-rw-r--r-- root/root 194581 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/table.py
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-rw-r--r-- root/root 39 2022-12-03 18:15 ./usr/lib/python3/dist-packages/biom_format-2.1.12.egg-info/requires.txt
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 109292
Build-Time: 98
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1786
Job: python-biom-format_2.1.12-3
Machine Architecture: armhf
Package: python-biom-format
Package-Time: 1922
Source-Version: 2.1.12-3
Space: 109292
Status: successful
Version: 2.1.12-3
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Finished at 2022-12-06T19:38:40Z
Build needed 00:32:02, 109292k disk space