python-biom-format →
2.1.10-3 →
armhf → 2021-12-06 05:16:57
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard
+==============================================================================+
| python-biom-format 2.1.10-3 (armhf) Mon, 06 Dec 2021 04:47:59 +0000 |
+==============================================================================+
Package: python-biom-format
Version: 2.1.10-3
Source Version: 2.1.10-3
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-f388f876-2db6-45cd-9c6d-e31f4e7454e9' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
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Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [12.6 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.5 MB]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
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Check APT
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Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-biom-format' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-biom-format.git
Please use:
git clone https://salsa.debian.org/med-team/python-biom-format.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 8562 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main python-biom-format 2.1.10-3 (dsc) [2571 B]
Get:2 http://172.17.4.1/private bookworm-staging/main python-biom-format 2.1.10-3 (tar) [8532 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main python-biom-format 2.1.10-3 (diff) [26.9 kB]
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I: NOTICE: Log filtering will replace 'build/python-biom-format-1FI7jC/python-biom-format-2.1.10' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-biom-format-1FI7jC' with '<<BUILDDIR>>'
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| Install build-essential |
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Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-jLYSA6/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-jLYSA6/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-jLYSA6/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-jLYSA6/apt_archive ./ InRelease
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Get:3 copy:/<<BUILDDIR>>/resolver-jLYSA6/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-jLYSA6/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-jLYSA6/apt_archive ./ Packages [431 B]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 11 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-jLYSA6/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12559 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
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| Check architectures |
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Arch check ok (armhf included in any-amd64 any-arm64 any-i386 any-mips64el any-ppc64el armel armhf mipsel all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest, python3-pytest-cov
Filtered Build-Depends: debhelper-compat (= 13), dh-python, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest, python3-pytest-cov
dpkg-deb: building package 'sbuild-build-depends-python-biom-format-dummy' in '/<<BUILDDIR>>/resolver-jLYSA6/apt_archive/sbuild-build-depends-python-biom-format-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-biom-format-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-jLYSA6/apt_archive ./ InRelease
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Get:3 copy:/<<BUILDDIR>>/resolver-jLYSA6/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-jLYSA6/apt_archive ./ Sources [611 B]
Get:5 copy:/<<BUILDDIR>>/resolver-jLYSA6/apt_archive ./ Packages [679 B]
Fetched 2623 B in 1s (3470 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install python-biom-format build dependencies (apt-based resolver)
------------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bash-completion bsdextrautils
ca-certificates cython3 debhelper dh-autoreconf dh-python
dh-strip-nondeterminism docutils-common dwz file fonts-lyx gettext
gettext-base groff-base help2man intltool-debian libaec0 libarchive-zip-perl
libblas3 libbrotli1 libbsd0 libcurl4 libdebhelper-perl libdeflate0 libelf1
libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfreetype6
libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhdf5-103-1 libhdf5-hl-100 libicu67 libimagequant0 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-hotkeys libjs-jquery-isonscreen
libjs-jquery-metadata libjs-jquery-tablesorter
libjs-jquery-throttle-debounce libjs-jquery-ui libjs-sphinxdoc
libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblzf1 libmagic-mgc
libmagic1 libmd0 libmpdec3 libnghttp2-14 libopenjp2-7 libpipeline1
libpng16-16 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib
libraqm0 librtmp1 libsigsegv2 libssh2-1 libsub-override-perl libsz2 libtiff5
libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxau6 libxcb1
libxdmcp6 libxml2 m4 mailcap man-db media-types mime-support openssl
po-debconf python-babel-localedata python-matplotlib-data python3
python3-alabaster python3-all python3-all-dev python3-attr python3-babel
python3-certifi python3-chardet python3-click python3-colorama
python3-cov-core python3-coverage python3-cycler python3-dateutil
python3-decorator python3-dev python3-distutils python3-docutils
python3-future python3-h5py python3-h5py-serial python3-idna
python3-imagesize python3-importlib-metadata python3-iniconfig
python3-jinja2 python3-kiwisolver python3-lib2to3 python3-markupsafe
python3-matplotlib python3-minimal python3-more-itertools python3-nose
python3-nose2 python3-numpy python3-packaging python3-pandas
python3-pandas-lib python3-pil python3-pkg-resources python3-pluggy
python3-py python3-pygments python3-pyparsing python3-pytest
python3-pytest-cov python3-requests python3-roman python3-scipy
python3-setuptools python3-six python3-snowballstemmer python3-sphinx
python3-toml python3-tz python3-urllib3 python3-zipp python3.9 python3.9-dev
python3.9-minimal sgml-base sphinx-common ttf-bitstream-vera xml-core
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cython-doc dh-make flit
gettext-doc libasprintf-dev libgettextpo-dev groff libjs-jquery-ui-docs
liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
apparmor less www-browser libmail-box-perl python3-doc python3-tk
python3-venv python-attr-doc python-coverage-doc python-cycler-doc
docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french
texlive-latex-base texlive-latex-recommended python-future-doc
python-h5py-doc python-jinja2-doc dvipng ffmpeg ghostscript gir1.2-gtk-3.0
inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi
python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip
python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft
python-nose-doc python-nose2-doc gfortran python-numpy-doc python-pandas-doc
python3-statsmodels python-pil-doc subversion python-pygments-doc
python-pyparsing-doc python3-cryptography python3-openssl python3-socks
python-requests-doc python-scipy-doc python-setuptools-doc python3-stemmer
fonts-freefont-otf imagemagick-6.q16 latexmk libjs-mathjax
python3-sphinx-rtd-theme sphinx-doc tex-gyre texlive-fonts-recommended
texlive-plain-generic python3.9-venv python3.9-doc binfmt-support
sgml-base-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common publicsuffix libltdl-dev
libmail-sendmail-perl libpaper-utils python3-tk python3-bottleneck
python3-numexpr python3-odf python3-openpyxl python3-xlwt python3-bs4
python3-html5lib python3-lxml python3-tables python3-olefile
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bash-completion bsdextrautils
ca-certificates cython3 debhelper dh-autoreconf dh-python
dh-strip-nondeterminism docutils-common dwz file fonts-lyx gettext
gettext-base groff-base help2man intltool-debian libaec0 libarchive-zip-perl
libblas3 libbrotli1 libbsd0 libcurl4 libdebhelper-perl libdeflate0 libelf1
libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfreetype6
libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhdf5-103-1 libhdf5-hl-100 libicu67 libimagequant0 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-hotkeys libjs-jquery-isonscreen
libjs-jquery-metadata libjs-jquery-tablesorter
libjs-jquery-throttle-debounce libjs-jquery-ui libjs-sphinxdoc
libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblzf1 libmagic-mgc
libmagic1 libmd0 libmpdec3 libnghttp2-14 libopenjp2-7 libpipeline1
libpng16-16 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib
libraqm0 librtmp1 libsigsegv2 libssh2-1 libsub-override-perl libsz2 libtiff5
libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxau6 libxcb1
libxdmcp6 libxml2 m4 mailcap man-db media-types mime-support openssl
po-debconf python-babel-localedata python-matplotlib-data python3
python3-alabaster python3-all python3-all-dev python3-attr python3-babel
python3-certifi python3-chardet python3-click python3-colorama
python3-cov-core python3-coverage python3-cycler python3-dateutil
python3-decorator python3-dev python3-distutils python3-docutils
python3-future python3-h5py python3-h5py-serial python3-idna
python3-imagesize python3-importlib-metadata python3-iniconfig
python3-jinja2 python3-kiwisolver python3-lib2to3 python3-markupsafe
python3-matplotlib python3-minimal python3-more-itertools python3-nose
python3-nose2 python3-numpy python3-packaging python3-pandas
python3-pandas-lib python3-pil python3-pkg-resources python3-pluggy
python3-py python3-pygments python3-pyparsing python3-pytest
python3-pytest-cov python3-requests python3-roman python3-scipy
python3-setuptools python3-six python3-snowballstemmer python3-sphinx
python3-toml python3-tz python3-urllib3 python3-zipp python3.9 python3.9-dev
python3.9-minimal sbuild-build-depends-python-biom-format-dummy sgml-base
sphinx-common ttf-bitstream-vera xml-core zlib1g-dev
0 upgraded, 165 newly installed, 0 to remove and 11 not upgraded.
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Get:2 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-4 [135 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.4-1 [31.6 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-8 [315 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.9-1+rpi1 [795 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-3 [80.1 kB]
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Get:16 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
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Get:20 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.9.7-1 [38.0 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf sgml-base all 1.30 [15.1 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf bash-completion all 1:2.11-5 [234 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
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Get:25 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
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Get:28 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
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Get:35 http://172.17.4.1/private bookworm-staging/main armhf cython3 armhf 0.29.24-1 [1233 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
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Get:45 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
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Get:51 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.9-2 [79.5 kB]
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Get:55 http://172.17.4.1/private bookworm-staging/main armhf docutils-common all 0.17.1+dfsg-2 [127 kB]
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Get:57 http://172.17.4.1/private bookworm-staging/main armhf help2man armhf 1.48.5 [143 kB]
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Get:64 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
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Get:69 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.1-3 [135 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.11.0+dfsg-1 [386 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-10+rpi1 [234 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.70.1-1 [1210 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libsz2 armhf 1.0.6-1 [7452 B]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-103-1 armhf 1.10.7+repack-4+rpi1 [1246 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-100 armhf 1.10.7+repack-4+rpi1 [82.1 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-metadata all 12-3 [7660 B]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [184 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-throttle-debounce all 1.1+dfsg.1-1.1 [6412 B]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.13.0+dfsg-1 [250 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.9.1~dfsg-4 [100 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.3.1-1 [139 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.0-1 [1594 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-9 [24.6 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.12~rc1-2 [121 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf liblzf1 armhf 3.6-3 [9268 B]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libopenjp2-7 armhf 2.4.0-3 [150 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.9-1+rpi1 [1411 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-dev armhf 3.9.9-1+rpi1 [2996 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.9.7-1 [21.8 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.9.7-1 [1068 B]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libraqm0 armhf 0.7.0-4 [9388 B]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libwebp6 armhf 0.6.1-2.1 [225 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.3.0-2 [272 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libwebpdemux2 armhf 0.6.1-2.1 [86.8 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libwebpmux3 armhf 0.6.1-2.1 [94.4 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf python-babel-localedata all 2.8.0+dfsg.1-7 [4997 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf ttf-bitstream-vera all 1.10-8.1 [223 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf python-matplotlib-data all 3.3.4-2 [4154 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf python3-alabaster all 0.7.12-1 [20.8 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.9.7-1 [1052 B]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf python3.9-dev armhf 3.9.9-1+rpi1 [501 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.9.7-1 [25.3 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf python3-all-dev armhf 3.9.7-1 [1064 B]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf python3-attr all 20.3.0-1 [52.9 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 58.2.0-1 [192 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf python3-tz all 2021.3-1 [34.9 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf python3-babel all 2.8.0+dfsg.1-7 [100 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf python3-certifi all 2020.6.20-1 [151 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf python3-chardet all 4.0.0-1 [99.0 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf python3-colorama all 0.4.4-1 [28.5 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf python3-click all 8.0.2-1 [91.8 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf python3-coverage armhf 5.1+dfsg.1-2.1 [167 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf python3-six all 1.16.0-2 [17.5 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf python3-nose2 all 0.9.2-1 [94.1 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf python3-cov-core all 1.15.0-3 [7528 B]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf python3-cycler all 0.11.0-1 [8020 B]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf python3-dateutil all 2.8.1-6 [79.2 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf python3-decorator all 4.4.2-2 [15.8 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf python3-roman all 3.3-1 [10.7 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf python3-docutils all 0.17.1+dfsg-2 [393 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf python3-future all 0.18.2-5 [349 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.21.4-2 [3438 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf python3-h5py-serial armhf 3.5.0-2 [688 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf python3-h5py all 3.5.0-2 [13.0 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf python3-idna all 2.10-1 [37.4 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf python3-imagesize all 1.3.0-1 [6360 B]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf python3-more-itertools all 8.10.0-2 [53.0 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf python3-zipp all 1.0.0-3 [6060 B]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf python3-importlib-metadata all 4.6.4-1 [22.5 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf python3-iniconfig all 1.1.1-1 [6308 B]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf python3-markupsafe armhf 2.0.1-2 [13.1 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf python3-jinja2 all 3.0.1-2 [121 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf python3-kiwisolver armhf 1.3.2-1 [45.8 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf python3-pyparsing all 2.4.7-1 [109 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf python3-pil armhf 8.4.0-1 [419 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf python3-matplotlib armhf 3.3.4-2 [6035 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf python3-nose all 1.3.7-8 [133 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf python3-packaging all 21.3-1 [34.1 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas-lib armhf 1.1.5+dfsg-2 [2863 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas all 1.1.5+dfsg-2 [2096 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf python3-pluggy all 0.13.0-7.1 [22.3 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf python3-py all 1.10.0-1 [94.2 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf python3-pygments all 2.7.1+dfsg-2.1 [657 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf python3-toml all 0.10.2-1 [16.2 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest all 6.2.5-1 [218 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest-cov all 3.0.0-1 [25.7 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf python3-urllib3 all 1.26.5-1~exp1 [114 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf python3-requests all 2.25.1+dfsg-2 [69.3 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf python3-scipy armhf 1.7.1-2 [11.7 MB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 58.2.0-1 [396 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf python3-snowballstemmer all 2.2.0-1 [58.5 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf sphinx-common all 4.3.1-1 [629 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf python3-sphinx all 4.3.1-1 [533 kB]
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Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libblas3:armhf (3.10.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libexpat1-dev:armhf (2.4.1-3) ...
Setting up libjpeg62-turbo:armhf (1:2.1.2-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up bash-completion (1:2.11-5) ...
Setting up liblzf1:armhf (3.6-3) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up libfribidi0:armhf (1.0.8-2) ...
Setting up libimagequant0:armhf (2.12.2-1.1) ...
Setting up libpng16-16:armhf (1.6.37-3) ...
Setting up autopoint (0.21-4) ...
Setting up libwebp6:armhf (0.6.1-2.1) ...
Setting up libgfortran5:armhf (11.2.0-10+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up libmd0:armhf (1.0.4-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libmpdec3:armhf (2.5.1-2+rpi1) ...
Setting up libopenjp2-7:armhf (2.4.0-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.10.0-2) ...
Setting up sgml-base (1.30) ...
Setting up libtiff5:armhf (4.3.0-2) ...
Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-8) ...
Setting up libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ...
Setting up python-matplotlib-data (3.3.4-2) ...
Setting up openssl (1.1.1l-1) ...
Setting up libwebpmux3:armhf (0.6.1-2.1) ...
Setting up libbsd0:armhf (0.11.3-1) ...
Setting up mailcap (3.70+nmu1) ...
Setting up libelf1:armhf (0.186-1) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up libsz2:armhf (1.0.6-1) ...
Setting up libpython3.9-stdlib:armhf (3.9.9-1+rpi1) ...
Setting up libpython3-stdlib:armhf (3.9.7-1) ...
Setting up libjs-underscore (1.9.1~dfsg-4) ...
Setting up libfile-stripnondeterminism-perl (1.12.1-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.10.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.14-3) ...
Setting up gettext (0.21-4) ...
Setting up mime-support (3.66) ...
Setting up libtool (2.4.6-15) ...
Setting up libwebpdemux2:armhf (0.6.1-2.1) ...
Setting up m4 (1.4.18-5) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
129 added, 0 removed; done.
Setting up libpython3.9:armhf (3.9.9-1+rpi1) ...
Setting up libjs-jquery-ui (1.13.0+dfsg-1) ...
Setting up libfreetype6:armhf (2.11.0+dfsg-1) ...
Setting up libjs-jquery-metadata (12-3) ...
Setting up libjs-jquery-isonscreen (1.2.0-1.1) ...
Setting up libjs-sphinxdoc (4.3.1-1) ...
Setting up autoconf (2.71-2) ...
Setting up dh-strip-nondeterminism (1.12.1-1) ...
Setting up dwz (0.14-1) ...
Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-3) ...
Setting up groff-base (1.22.4-7) ...
Setting up xml-core (0.18+nmu1) ...
Setting up libcurl4:armhf (7.79.1-2) ...
Setting up libharfbuzz0b:armhf (2.7.4-1) ...
Setting up python3.9 (3.9.9-1+rpi1) ...
Setting up liblbfgsb0:armhf (3.0+dfsg.3-9) ...
Setting up automake (1:1.16.5-1.1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libpython3.9-dev:armhf (3.9.9-1+rpi1) ...
Setting up python3 (3.9.7-1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-markupsafe (2.0.1-2) ...
Setting up python3-tz (2021.3-1) ...
Setting up python3-six (1.16.0-2) ...
Setting up dh-autoreconf (20) ...
Setting up python3-roman (3.3-1) ...
Setting up python3-decorator (4.4.2-2) ...
Setting up python3-pyparsing (2.4.7-1) ...
Setting up python3-certifi (2020.6.20-1) ...
Setting up python3-snowballstemmer (2.2.0-1) ...
Setting up libraqm0:armhf (0.7.0-4) ...
Setting up sphinx-common (4.3.1-1) ...
Setting up python3-cycler (0.11.0-1) ...
Setting up python3-kiwisolver (1.3.2-1) ...
Setting up python3-idna (2.10-1) ...
Setting up cython3 (0.29.24-1) ...
Setting up python3-toml (0.10.2-1) ...
Setting up python3-urllib3 (1.26.5-1~exp1) ...
Setting up libhdf5-103-1:armhf (1.10.7+repack-4+rpi1) ...
Setting up python3.9-dev (3.9.9-1+rpi1) ...
Setting up python3-dateutil (2.8.1-6) ...
Setting up python3-lib2to3 (3.9.9-2) ...
Setting up python3-imagesize (1.3.0-1) ...
Setting up libhdf5-hl-100:armhf (1.10.7+repack-4+rpi1) ...
Setting up python3-pkg-resources (58.2.0-1) ...
Setting up python3-distutils (3.9.9-2) ...
Setting up dh-python (5.20211114) ...
Setting up python3-more-itertools (8.10.0-2) ...
Setting up python3-iniconfig (1.1.1-1) ...
Setting up python3-attr (20.3.0-1) ...
Setting up libpython3-dev:armhf (3.9.7-1) ...
Setting up python3-setuptools (58.2.0-1) ...
Setting up python3-py (1.10.0-1) ...
Setting up python3-babel (2.8.0+dfsg.1-7) ...
update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
Setting up python3-colorama (0.4.4-1) ...
Setting up python3-alabaster (0.7.12-1) ...
Setting up python3-all (3.9.7-1) ...
Setting up python3-coverage (5.1+dfsg.1-2.1) ...
Setting up debhelper (13.5.2) ...
Setting up python3-nose2 (0.9.2-1) ...
Setting up python3-zipp (1.0.0-3) ...
Setting up python3-click (8.0.2-1) ...
Setting up python3-nose (1.3.7-8) ...
Setting up python3-pil:armhf (8.4.0-1) ...
Setting up python3-jinja2 (3.0.1-2) ...
Setting up python3-pygments (2.7.1+dfsg-2.1) ...
Setting up python3-packaging (21.3-1) ...
Setting up python3-chardet (4.0.0-1) ...
Setting up libpython3-all-dev:armhf (3.9.7-1) ...
Setting up python3-dev (3.9.7-1) ...
Setting up python3-requests (2.25.1+dfsg-2) ...
Setting up python3-numpy (1:1.21.4-2) ...
Setting up python3-future (0.18.2-5) ...
update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode
update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode
Setting up python3-all-dev (3.9.7-1) ...
Setting up python3-matplotlib (3.3.4-2) ...
Setting up python3-scipy (1.7.1-2) ...
Setting up python3-importlib-metadata (4.6.4-1) ...
Setting up python3-cov-core (1.15.0-3) ...
Setting up python3-pandas-lib:armhf (1.1.5+dfsg-2) ...
Setting up python3-h5py-serial (3.5.0-2) ...
Setting up python3-pandas (1.1.5+dfsg-2) ...
Setting up python3-h5py (3.5.0-2) ...
Setting up python3-pluggy (0.13.0-7.1) ...
Setting up python3-pytest (6.2.5-1) ...
Setting up python3-pytest-cov (3.0.0-1) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
Processing triggers for sgml-base (1.30) ...
Setting up docutils-common (0.17.1+dfsg-2) ...
Processing triggers for sgml-base (1.30) ...
Setting up python3-docutils (0.17.1+dfsg-2) ...
Setting up python3-sphinx (4.3.1-1) ...
Setting up sbuild-build-depends-python-biom-format-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-11_11.2.0-10+rpi1 gcc-11_11.2.0-10+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-11-dev_11.2.0-10+rpi1 libstdc++6_11.2.0-10+rpi1 linux-libc-dev_5.14.16-1+rpi1
Package versions: adduser_3.118 apt_2.3.12 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-3.1 bash-completion_1:2.11-5 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-4 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 ca-certificates_20210119 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-10+rpi1 cython3_0.29.24-1 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-python_5.20211114 dh-strip-nondeterminism_1.12.1-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 docutils-common_0.17.1+dfsg-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.41-2 findutils_4.8.0-1 fonts-lyx_2.3.6-1 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-10+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-10+rpi1 gcc-11-base_11.2.0-10+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 help2man_1.48.5 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libaec0_1.0.6-1 libapt-pkg6.0_2.3.12 libarchive-zip-perl_1.68-1 libasan6_11.2.0-10+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-10+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37-5+rpi1 libblas3_3.10.0-1 libblkid1_2.37.2-4 libbrotli1_1.0.9-2+b1 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-10+rpi1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.26-1 libcrypt1_1:4.4.26-1 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libcurl4_7.79.1-2 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.261 libdebhelper-perl_13.5.2 libdeflate0_1.8-1 libdpkg-perl_1.20.9+rpi1 libelf1_0.186-1 libexpat1_2.4.1-3 libexpat1-dev_2.4.1-3 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi8_3.4.2-3 libfile-stripnondeterminism-perl_1.12.1-1 libfreetype6_2.11.0+dfsg-1 libfribidi0_1.0.8-2 libgcc-11-dev_11.2.0-10+rpi1 libgcc-s1_11.2.0-10+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgfortran5_11.2.0-10+rpi1 libglib2.0-0_2.70.1-1 libgmp10_2:6.2.1+dfsg-3 libgnutls30_3.7.2-2 libgomp1_11.2.0-10+rpi1 libgpg-error0_1.42-3 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.18.3-7 libharfbuzz0b_2.7.4-1 libhdf5-103-1_1.10.7+repack-4+rpi1 libhdf5-hl-100_1.10.7+repack-4+rpi1 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libimagequant0_2.12.2-1.1 libisl23_0.24-2 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.1.2-1 libjs-jquery_3.5.1+dfsg+~3.5.5-8 libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1 libjs-jquery-isonscreen_1.2.0-1.1 libjs-jquery-metadata_12-3 libjs-jquery-tablesorter_1:2.31.3+dfsg1-3 libjs-jquery-throttle-debounce_1.1+dfsg.1-1.1 libjs-jquery-ui_1.13.0+dfsg-1 libjs-sphinxdoc_4.3.1-1 libjs-underscore_1.9.1~dfsg-4 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 liblapack3_3.10.0-1 liblbfgsb0_3.0+dfsg.3-9 liblcms2-2_2.12~rc1-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzf1_3.6-3 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmd0_1.0.4-1 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.3-1 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libopenjp2-7_2.4.0-3 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.4-1 libpng16-16_1.6.37-3 libpsl5_0.21.0-1.2 libpython3-all-dev_3.9.7-1 libpython3-dev_3.9.7-1 libpython3-stdlib_3.9.7-1 libpython3.9_3.9.9-1+rpi1 libpython3.9-dev_3.9.9-1+rpi1 libpython3.9-minimal_3.9.9-1+rpi1 libpython3.9-stdlib_3.9.9-1+rpi1 libraqm0_0.7.0-4 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg2-2 libsasl2-modules-db_2.1.27+dfsg2-2 libseccomp2_2.5.3-2+rpi1 libselinux1_3.3-1 libsemanage-common_3.3-1 libsemanage2_3.3-1 libsepol1_3.1-1 libsepol2_3.3-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-4 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssh2-1_1.10.0-2 libssl1.1_1.1.1l-1 libstdc++-11-dev_11.2.0-10+rpi1 libstdc++6_11.2.0-10+rpi1 libsub-override-perl_0.09-2 libsystemd0_249.7-1+rpi1 libsz2_1.0.6-1 libtasn1-6_4.18.0-4 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtiff5_4.3.0-2 libtinfo6_6.3-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-10+rpi1 libuchardet0_0.0.7-1 libudev1_249.7-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-4 libwebp6_0.6.1-2.1 libwebpdemux2_0.6.1-2.1 libwebpmux3_0.6.1-2.1 libxau6_1:1.0.9-1 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.14.16-1+rpi1 login_1:4.8.1-2 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 mailcap_3.70+nmu1 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 mime-support_3.66 mount_2.37.2-4 ncurses-base_6.3-1 ncurses-bin_6.3-1 netbase_6.3 openssl_1.1.1l-1 passwd_1:4.8.1-2 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python-babel-localedata_2.8.0+dfsg.1-7 python-matplotlib-data_3.3.4-2 python3_3.9.7-1 python3-alabaster_0.7.12-1 python3-all_3.9.7-1 python3-all-dev_3.9.7-1 python3-attr_20.3.0-1 python3-babel_2.8.0+dfsg.1-7 python3-certifi_2020.6.20-1 python3-chardet_4.0.0-1 python3-click_8.0.2-1 python3-colorama_0.4.4-1 python3-cov-core_1.15.0-3 python3-coverage_5.1+dfsg.1-2.1 python3-cycler_0.11.0-1 python3-dateutil_2.8.1-6 python3-decorator_4.4.2-2 python3-dev_3.9.7-1 python3-distutils_3.9.9-2 python3-docutils_0.17.1+dfsg-2 python3-future_0.18.2-5 python3-h5py_3.5.0-2 python3-h5py-serial_3.5.0-2 python3-idna_2.10-1 python3-imagesize_1.3.0-1 python3-importlib-metadata_4.6.4-1 python3-iniconfig_1.1.1-1 python3-jinja2_3.0.1-2 python3-kiwisolver_1.3.2-1 python3-lib2to3_3.9.9-2 python3-markupsafe_2.0.1-2 python3-matplotlib_3.3.4-2 python3-minimal_3.9.7-1 python3-more-itertools_8.10.0-2 python3-nose_1.3.7-8 python3-nose2_0.9.2-1 python3-numpy_1:1.21.4-2 python3-packaging_21.3-1 python3-pandas_1.1.5+dfsg-2 python3-pandas-lib_1.1.5+dfsg-2 python3-pil_8.4.0-1 python3-pkg-resources_58.2.0-1 python3-pluggy_0.13.0-7.1 python3-py_1.10.0-1 python3-pygments_2.7.1+dfsg-2.1 python3-pyparsing_2.4.7-1 python3-pytest_6.2.5-1 python3-pytest-cov_3.0.0-1 python3-requests_2.25.1+dfsg-2 python3-roman_3.3-1 python3-scipy_1.7.1-2 python3-setuptools_58.2.0-1 python3-six_1.16.0-2 python3-snowballstemmer_2.2.0-1 python3-sphinx_4.3.1-1 python3-toml_0.10.2-1 python3-tz_2021.3-1 python3-urllib3_1.26.5-1~exp1 python3-zipp_1.0.0-3 python3.9_3.9.9-1+rpi1 python3.9-dev_3.9.9-1+rpi1 python3.9-minimal_3.9.9-1+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-biom-format-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 sphinx-common_4.3.1-1 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 ttf-bitstream-vera_1.10-8.1 tzdata_2021e-1 util-linux_2.37.2-4 xml-core_0.18+nmu1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.tXRyJY3N/trustedkeys.kbx': General error
gpgv: Signature made Fri Dec 3 16:30:46 2021 UTC
gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-biom-format_2.1.10-3.dsc
dpkg-source: info: extracting python-biom-format in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-biom-format_2.1.10.orig.tar.xz
dpkg-source: info: unpacking python-biom-format_2.1.10-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying ignore_local_dist-packages.patch
dpkg-source: info: applying no-web-adds.patch
dpkg-source: info: applying fix_future_import.patch
dpkg-source: info: applying enable_sloppy_sphinx_build.patch
dpkg-source: info: applying sphinx_1.6.patch
dpkg-source: info: applying sphinx.ext.pngmath.patch
dpkg-source: info: applying posix_shell.patch
dpkg-source: info: applying sphinx_add_javascript.patch
dpkg-source: info: applying fix_test.patch
dpkg-source: info: applying ignore_failing_hdf5_test.patch
dpkg-source: info: applying python3.10.patch
dpkg-source: info: applying ignore_one_failing_hdf5_test.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-f388f876-2db6-45cd-9c6d-e31f4e7454e9
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-biom-format
dpkg-buildpackage: info: source version 2.1.10-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3,bash-completion,sphinxdoc --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
install -d /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/home
pybuild --clean -i python{version} -p 3.9
I: pybuild base:237: python3.9 setup.py clean
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_filter.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_subsample.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_transform.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
[2/3] Cythonizing biom/_subsample.pyx
[3/3] Cythonizing biom/_transform.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
rm -rf .pybuild/
find . -name \*.pyc -exec rm {} \;
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars ./biom/_filter.c ./biom/_subsample.c ./biom/_transform.c debian/files
rm -fr -- debian/python3-biom-format/ debian/tmp/ debian/python-biom-format-doc/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules binary-arch
dh binary-arch --with python3,bash-completion,sphinxdoc --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
install -d /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/home
pybuild --configure -i python{version} -p 3.9
I: pybuild base:237: python3.9 setup.py config
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_filter.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_subsample.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_transform.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
[2/3] Cythonizing biom/_subsample.pyx
[3/3] Cythonizing biom/_transform.pyx
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# arch
USE_CYTHON=true dh_auto_build
pybuild --build -i python{version} -p 3.9
I: pybuild base:237: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/err.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/exception.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/parse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/metadata_exporter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_ids.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/installation_informer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/metadata_adder.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_converter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_head.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_normalizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_subsetter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_summarizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_validator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/uc_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/long_lines.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/test_err.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/test_parse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/test_util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/test_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_add_metadata.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_show_install_info.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_summarize_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_normalizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_uc_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_subset_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_converter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_validate_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
running egg_info
creating biom_format.egg-info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
writing manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
adding license file 'COPYING.txt'
writing manifest file 'biom_format.egg-info/SOURCES.txt'
copying biom/_filter.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/_subsample.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/_transform.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/assets
copying biom/assets/exercise_api.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/assets
copying biom/assets/exercise_cli.sh -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/assets
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_data/bad_table.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/bad_table.txt.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/empty.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/no-contents.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
running build_ext
building 'biom._filter' extension
creating build
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/biom
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_filter.c -o build/temp.linux-armhf-3.9/biom/_filter.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_filter.c:642:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/biom/_filter.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_filter.cpython-39-arm-linux-gnueabihf.so
building 'biom._transform' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_transform.c -o build/temp.linux-armhf-3.9/biom/_transform.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_transform.c:642:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/biom/_transform.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_transform.cpython-39-arm-linux-gnueabihf.so
building 'biom._subsample' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_subsample.c -o build/temp.linux-armhf-3.9/biom/_subsample.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_subsample.c:642:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/biom/_subsample.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_subsample.cpython-39-arm-linux-gnueabihf.so
# indep:
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html
Running Sphinx v4.3.1
making output directory... done
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
Failed to import 'biom': no module named biom
Failed to import 'biom.table': no module named biom.table
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 12 source files that are out of date
updating environment: [new config] 12 added, 0 changed, 0 removed
reading sources... [ 8%] BIOM_LICENSE
reading sources... [ 16%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 41%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 66%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 91%] documentation/table_objects
reading sources... [100%] index
WARNING: autodoc: failed to import module 'biom'; the following exception was raised:
No module named 'biom._filter'
WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised:
No module named 'biom._filter'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 8%] BIOM_LICENSE
writing output... [ 16%] documentation/adding_metadata
writing output... [ 25%] documentation/biom_conversion
writing output... [ 33%] documentation/biom_format
writing output... [ 41%] documentation/format_versions/biom-1.0
writing output... [ 50%] documentation/format_versions/biom-2.0
writing output... [ 58%] documentation/format_versions/biom-2.1
writing output... [ 66%] documentation/index
writing output... [ 75%] documentation/quick_usage_examples
writing output... [ 83%] documentation/summarizing_biom_tables
writing output... [ 91%] documentation/table_objects
writing output... [100%] index
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated
generating indices... done
writing additional pages... search done
copying images... [100%] _static/biom-format.png
copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 6 warnings.
The HTML pages are in build/html.
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b man doc build/man
Running Sphinx v4.3.1
making output directory... done
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
Failed to import 'biom': no module named biom
Failed to import 'biom.table': no module named biom.table
building [mo]: targets for 0 po files that are out of date
building [man]: all manpages
updating environment: [new config] 12 added, 0 changed, 0 removed
reading sources... [ 8%] BIOM_LICENSE
reading sources... [ 16%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 41%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 66%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 91%] documentation/table_objects
reading sources... [100%] index
WARNING: autodoc: failed to import module 'biom'; the following exception was raised:
No module named 'biom._filter'
WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised:
No module named 'biom._filter'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
writing... biom.1 { documentation/index documentation/biom_format documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 documentation/format_versions/biom-2.1 documentation/quick_usage_examples documentation/table_objects documentation/biom_conversion documentation/adding_metadata documentation/summarizing_biom_tables BIOM_LICENSE } done
build succeeded, 2 warnings.
The manual pages are in build/man.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a -O--buildsystem=pybuild
pybuild --test --test-pytest -i python{version} -p 3.9
I: pybuild pybuild:285: cp -r /<<PKGBUILDDIR>>/examples /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build
I: pybuild base:237: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build; python3.9 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.9.9, pytest-6.2.5, py-1.10.0, pluggy-0.13.0
rootdir: /<<PKGBUILDDIR>>, configfile: pytest.ini
plugins: cov-3.0.0
collected 356 items
biom/tests/test_err.py ..................... [ 5%]
biom/tests/test_parse.py ......................... [ 12%]
biom/tests/test_table.py ............................................... [ 26%]
.................s..................................................sss. [ 46%]
...........s............................................................ [ 66%]
..................................................... [ 81%]
biom/tests/test_util.py ..s................ [ 86%]
biom/tests/test_cli/test_add_metadata.py .... [ 87%]
biom/tests/test_cli/test_show_install_info.py . [ 88%]
biom/tests/test_cli/test_subset_table.py ..... [ 89%]
biom/tests/test_cli/test_summarize_table.py .. [ 90%]
biom/tests/test_cli/test_table_converter.py ...... [ 91%]
biom/tests/test_cli/test_table_normalizer.py . [ 92%]
biom/tests/test_cli/test_uc_processor.py ...... [ 93%]
biom/tests/test_cli/test_validate_table.py ...................... [100%]
=============================== warnings summary ===============================
biom/tests/test_table.py:19
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py:19: FutureWarning: pandas.util.testing is deprecated. Use the functions in the public API at pandas.testing instead.
import pandas.util.testing as pdt
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_both
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_obs
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_sample
/usr/lib/python3/dist-packages/scipy/sparse/_index.py:125: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
self._set_arrayXarray(i, j, x)
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_observation_subset
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_sample_subset
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_observations_hdf5
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_samples_hdf5
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/table.py:4059: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
data = np.hstack(h5_data[start:end]
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_observation_subset
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_sample_subset
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_observations_hdf5
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_samples_hdf5
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/table.py:4061: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
indices = np.hstack(h5_indices[start:end]
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::TableTests::test_nnz_issue_727
/usr/lib/python3/dist-packages/scipy/sparse/_index.py:82: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
self._set_intXint(row, col, x.flat[0])
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:88: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('Num samples: ' + locale.format('%d', num_samples,
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:90: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('Num observations: ' + locale.format('%d',
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:95: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('Total count: ' + locale.format('%d', total_count,
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:110: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Min: ' + locale.format('%1.3f', min_counts, grouping=True))
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:111: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Max: ' + locale.format('%1.3f', max_counts, grouping=True))
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:112: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Median: ' + locale.format('%1.3f', median_counts,
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:114: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Mean: ' + locale.format('%1.3f', mean_counts,
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:116: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Std. dev.: ' + locale.format('%1.3f',
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py: 18 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:143: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('%s: ' % k + locale.format('%1.3f', v, grouping=True))
-- Docs: https://docs.pytest.org/en/stable/warnings.html
----------- coverage: platform linux, python 3.9.9-final-0 -----------
Name Stmts Miss Cover
-------------------------------------------------------------------
biom/__init__.py 16 0 100%
biom/cli/__init__.py 23 4 83%
biom/cli/installation_informer.py 57 11 81%
biom/cli/metadata_adder.py 78 29 63%
biom/cli/metadata_exporter.py 19 10 47%
biom/cli/table_converter.py 84 19 77%
biom/cli/table_head.py 14 5 64%
biom/cli/table_ids.py 10 3 70%
biom/cli/table_normalizer.py 24 5 79%
biom/cli/table_subsetter.py 73 19 74%
biom/cli/table_summarizer.py 67 15 78%
biom/cli/table_validator.py 318 65 80%
biom/cli/uc_processor.py 36 7 81%
biom/cli/util.py 17 5 71%
biom/err.py 122 1 99%
biom/exception.py 26 0 100%
biom/parse.py 304 66 78%
biom/table.py 1608 148 91%
biom/tests/__init__.py 0 0 100%
biom/tests/long_lines.py 8 0 100%
biom/tests/test_cli/__init__.py 0 0 100%
biom/tests/test_cli/test_add_metadata.py 40 1 98%
biom/tests/test_cli/test_show_install_info.py 8 1 88%
biom/tests/test_cli/test_subset_table.py 59 1 98%
biom/tests/test_cli/test_summarize_table.py 21 1 95%
biom/tests/test_cli/test_table_converter.py 80 1 99%
biom/tests/test_cli/test_table_normalizer.py 22 1 95%
biom/tests/test_cli/test_uc_processor.py 38 1 97%
biom/tests/test_cli/test_validate_table.py 306 1 99%
biom/tests/test_data/__init__.py 0 0 100%
biom/tests/test_err.py 162 4 98%
biom/tests/test_parse.py 229 1 99%
biom/tests/test_table.py 2413 34 99%
biom/tests/test_util.py 145 6 96%
biom/util.py 184 30 84%
-------------------------------------------------------------------
TOTAL 6611 495 93%
============ 350 passed, 6 skipped, 46 warnings in 90.67s (0:01:30) ============
rm -fr -- /tmp/dh-xdg-rundir-s1gg3X3J
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
rm -f -- debian/python3-biom-format.substvars
rm -fr -- debian/.debhelper/generated/python3-biom-format/ debian/python3-biom-format/ debian/tmp/
rm -f debian/python3-biom-format.debhelper.log
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install
install -d /<<PKGBUILDDIR>>/debian/tmp
pybuild --install -i python{version} -p 3.9 --dest-dir /<<PKGBUILDDIR>>/debian/tmp
I: pybuild base:237: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-biom-format
running install
running build
running build_py
running egg_info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
adding license file 'COPYING.txt'
writing manifest file 'biom_format.egg-info/SOURCES.txt'
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-biom-format
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/err.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/exception.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/parse.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/util.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/metadata_exporter.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_ids.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/installation_informer.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/metadata_adder.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_converter.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_head.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_normalizer.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_subsetter.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_validator.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/uc_processor.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/util.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/table_summarizer.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/metadata_adder.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/util.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/metadata_exporter.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/table_converter.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/installation_informer.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/table_subsetter.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/table_normalizer.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/table_head.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/table_ids.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/table_validator.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/uc_processor.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/long_lines.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_err.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_parse.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_util.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_add_metadata.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_show_install_info.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_table_normalizer.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_uc_processor.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_subset_table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_table_converter.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_validate_table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data/test.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data/test.json -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_data
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/__pycache__/test_add_metadata.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/__pycache__/test_show_install_info.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/__pycache__/test_subset_table.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/__pycache__/test_summarize_table.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/__pycache__/test_table_converter.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/__pycache__/test_table_normalizer.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/__pycache__/test_uc_processor.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/__pycache__/test_validate_table.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data/bad_table.txt -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data/bad_table.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data/empty.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data/no-contents.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data/test.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data/test.json -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data/test.json.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_data
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/__pycache__/test_err.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/__pycache__/test_parse.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/__pycache__/long_lines.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/__pycache__/test_table.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/__pycache__/test_util.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_filter.pyx -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_subsample.pyx -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_transform.pyx -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/assets
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/assets/exercise_api.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/assets
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/assets/exercise_cli.sh -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/assets
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_filter.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_transform.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_subsample.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/__pycache__/table.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/__pycache__/exception.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/__pycache__/util.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/__pycache__/err.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/__pycache__/parse.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/examples/min_sparse_otu_table.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/examples/min_sparse_otu_table_hdf5.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/examples/obs_md.txt -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/examples/rich_sparse_otu_table.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/examples/rich_sparse_otu_table_hdf5.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/examples/sam_md.txt -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/.coverage -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/err.py to err.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/exception.py to exception.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/parse.py to parse.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/table.py to table.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/util.py to util.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/metadata_exporter.py to metadata_exporter.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/table_ids.py to table_ids.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/installation_informer.py to installation_informer.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/metadata_adder.py to metadata_adder.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/table_converter.py to table_converter.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/table_head.py to table_head.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/table_normalizer.py to table_normalizer.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/table_subsetter.py to table_subsetter.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/table_summarizer.py to table_summarizer.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/table_validator.py to table_validator.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/uc_processor.py to uc_processor.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/util.py to util.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/long_lines.py to long_lines.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_err.py to test_err.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_parse.py to test_parse.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_util.py to test_util.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_table.py to test_table.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_data/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/assets/exercise_api.py to exercise_api.cpython-39.pyc
running install_egg_info
Copying biom_format.egg-info to /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom_format-2.1.10.egg-info
Skipping SOURCES.txt
running install_scripts
Installing biom script to /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/bin
I: pybuild pybuild:311: dh_numpy3
(grep -a -s -v python3:Depends debian/python3-biom-format.substvars; echo "python3:Depends=python3-numpy (>= 1:1.20.0), python3-numpy-abi9") > debian/python3-biom-format.substvars.new
mv debian/python3-biom-format.substvars.new debian/python3-biom-format.substvars
find debian/python3-biom-format -name .coverage -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
install -d debian/python3-biom-format/usr/share/doc/python3-biom-format
install -d debian/.debhelper/generated/python3-biom-format
cp --reflink=auto -a ./debian/README.test debian/python3-biom-format/usr/share/doc/python3-biom-format
cp --reflink=auto -a ./debian/tests/run-unit-test debian/python3-biom-format/usr/share/doc/python3-biom-format
chmod -R u\+rw,go=rX debian/python3-biom-format/usr/share/doc
install -p -m0644 debian/copyright debian/python3-biom-format/usr/share/doc/python3-biom-format/copyright
install -d debian/.debhelper/generated/python-biom-format-doc
dh_sphinxdoc -a -O--buildsystem=pybuild
dh_sphinxdoc: warning: Sphinx documentation not found
dh_installchangelogs -a -O--buildsystem=pybuild
install -p -m0644 debian/changelog debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog.Debian
install -p -m0644 ./ChangeLog.md debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog
rm -f debian/python3-biom-format.debhelper.log
debian/rules override_dh_installexamples
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installexamples
install -d debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/min_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/min_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/obs_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/rich_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/rich_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/sam_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
find debian -name "*.c" -delete
find debian -name "*.pyx" -delete
# move tests from Python3 package to examples package
if [ ! -d biom/tests ] ; then \
mv `find debian/python*biom-format -name tests -type d` biom ; \
else \
find debian/python*biom-format -name tests -type d | xargs rm -rf ; \
fi
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installman -a -O--buildsystem=pybuild
install -d debian/python3-biom-format/usr/share/man/man1/
install -p -m0644 ./debian/biom.1 debian/python3-biom-format/usr/share/man/man1/biom.1
man-recode --to-code UTF-8 --suffix .dh-new debian/python3-biom-format/usr/share/man/man1/biom.1
mv debian/python3-biom-format/usr/share/man/man1/biom.1.dh-new debian/python3-biom-format/usr/share/man/man1/biom.1
chmod 0644 -- debian/python3-biom-format/usr/share/man/man1/biom.1
dh_python3 -a -O--buildsystem=pybuild
D: dh_python3 dh_python3:161: version: 5.20211114
D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild']
D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': True, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'}
D: dh_python3 dh_python3:164: args: []
D: dh_python3 dh_python3:165: supported Python versions: 3.9 (default=3.9)
D: dh_python3 debhelper:129: skipping package: python-biom-format-doc
D: dh_python3 debhelper:157: source=python-biom-format, binary packages=['python3-biom-format']
D: dh_python3 dh_python3:183: processing package python3-biom-format...
D: dh_python3 fs:49: moving files from debian/python3-biom-format/usr/lib/python3.9/dist-packages to debian/python3-biom-format/usr/lib/python3/dist-packages/
D: dh_python3 fs:265: package python3-biom-format details = {'requires.txt': {'debian/python3-biom-format/usr/lib/python3/dist-packages/biom_format-2.1.10.egg-info/requires.txt'}, 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.9')}, 'ext_no_version': set()}
D: dh_python3 depends:118: generating dependencies for package python3-biom-format
D: dh_python3 pydist:142: trying to find dependency for click (python=None)
D: dh_python3 pydist:142: trying to find dependency for cython (python=None)
D: dh_python3 pydist:142: trying to find dependency for cython>=0.29 (python=None)
D: dh_python3 pydist:142: trying to find dependency for h5py (python=None)
D: dh_python3 pydist:142: trying to find dependency for numpy>=1.9.2 (python=None)
D: dh_python3 pydist:142: trying to find dependency for pandas>=0.20.0 (python=None)
D: dh_python3 pydist:142: trying to find dependency for scipy>=1.3.1 (python=None)
D: dh_python3 depends:282: D={'python3:any', 'python3-scipy', 'python3-h5py-serial', 'python3-pandas', 'cython3', 'python3 (<< 3.10)', 'python3 (>= 3.9~)', 'python3-numpy', 'python3-click'}; R=[]; S=[]; E=[], B=[]; RT=[]
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
cd debian/python3-biom-format
chmod a-x usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1
gzip -9nf usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1
cd '/<<PKGBUILDDIR>>'
rm -f debian/python3-biom-format.debhelper.log
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_fixperms
find debian/python3-biom-format ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/python3-biom-format/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biom-format/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-biom-format/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/python3-biom-format/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-biom-format -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-biom-format/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
find debian/python3-biom-format/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
find debian -name exercise_cli.sh -exec chmod +x \{\} \;
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
install -d debian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf
dwz -mdebian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug -- debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-39-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-39-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-39-arm-linux-gnueabihf.so
objcopy --compress-debug-sections debian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug
dh_strip -a -O--buildsystem=pybuild
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/5f
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-39-arm-linux-gnueabihf.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/5f/76c7f685943197eec5a8f012a5f0fb3808f1d8.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/5f/76c7f685943197eec5a8f012a5f0fb3808f1d8.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-39-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/5f/76c7f685943197eec5a8f012a5f0fb3808f1d8.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-39-arm-linux-gnueabihf.so
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/2a
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-39-arm-linux-gnueabihf.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/2a/95e6e8d3068ee6a02b5fa1648de95f9f4bc9a3.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/2a/95e6e8d3068ee6a02b5fa1648de95f9f4bc9a3.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-39-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/2a/95e6e8d3068ee6a02b5fa1648de95f9f4bc9a3.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-39-arm-linux-gnueabihf.so
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/65
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-39-arm-linux-gnueabihf.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/65/23ed08b6b306d22464ce04c8e40335b4a8101e.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/65/23ed08b6b306d22464ce04c8e40335b4a8101e.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-39-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/65/23ed08b6b306d22464ce04c8e40335b4a8101e.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-39-arm-linux-gnueabihf.so
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz
cp --reflink=auto -a debian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz
rm -fr debian/python3-biom-format/usr/lib/debug/.dwz
rmdir -p --ignore-fail-on-non-empty debian/python3-biom-format/usr/lib/debug
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc
ln -s python3-biom-format debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc/python3-biom-format-dbgsym
dh_makeshlibs -a -O--buildsystem=pybuild
rm -f debian/python3-biom-format/DEBIAN/shlibs
dh_shlibdeps -a -O--buildsystem=pybuild
install -d debian/python3-biom-format/DEBIAN
dpkg-shlibdeps -Tdebian/python3-biom-format.substvars debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-39-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-39-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-39-arm-linux-gnueabihf.so
dh_installdeb -a -O--buildsystem=pybuild
printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/postinst
cat debian/python3-biom-format.postinst.debhelper >> debian/python3-biom-format/DEBIAN/postinst
chmod 0755 -- debian/python3-biom-format/DEBIAN/postinst
printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/prerm
cat debian/python3-biom-format.prerm.debhelper >> debian/python3-biom-format/DEBIAN/prerm
chmod 0755 -- debian/python3-biom-format/DEBIAN/prerm
dh_gencontrol -a -O--buildsystem=pybuild
echo misc:Depends= >> debian/python3-biom-format.substvars
echo misc:Pre-Depends= >> debian/python3-biom-format.substvars
install -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN
dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -Pdebian/.debhelper/python3-biom-format/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=python3-biom-format-dbgsym "-DDepends=python3-biom-format (= \${binary:Version})" "-DDescription=debug symbols for python3-biom-format" "-DBuild-Ids=2a95e6e8d3068ee6a02b5fa1648de95f9f4bc9a3 5f76c7f685943197eec5a8f012a5f0fb3808f1d8 6523ed08b6b306d22464ce04c8e40335b4a8101e" -DSection=debug -UMulti-Arch -UReplaces -UBreaks
dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Versions} unused, but is defined
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/control
dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -Pdebian/python3-biom-format
dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Versions} unused, but is defined
chmod 0644 -- debian/python3-biom-format/DEBIAN/control
dh_md5sums -a -O--buildsystem=pybuild
cd debian/python3-biom-format >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/python3-biom-format/DEBIAN/md5sums
cd debian/.debhelper/python3-biom-format/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/md5sums
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb --root-owner-group --build debian/python3-biom-format ..
dpkg-deb --root-owner-group --build debian/.debhelper/python3-biom-format/dbgsym-root ..
dpkg-deb: building package 'python3-biom-format-dbgsym' in '../python3-biom-format-dbgsym_2.1.10-3_armhf.deb'.
dpkg-deb: building package 'python3-biom-format' in '../python3-biom-format_2.1.10-3_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../python-biom-format_2.1.10-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-12-06T05:16:50Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-biom-format_2.1.10-3_armhf.changes:
------------------------------------------
Format: 1.8
Date: Fri, 03 Dec 2021 16:21:56 +0000
Source: python-biom-format
Binary: python3-biom-format python3-biom-format-dbgsym
Architecture: armhf
Version: 2.1.10-3
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Graham Inggs <ginggs@debian.org>
Description:
python3-biom-format - Biological Observation Matrix (BIOM) format (Python 3)
Closes: 1000423
Changes:
python-biom-format (2.1.10-3) unstable; urgency=medium
.
* Team upload
.
[ Stefano Rivera ]
* Patch: Python 3.10 support. (Closes: #1000423)
.
[ Andreas Tille ]
* Ignore one failing test
Checksums-Sha1:
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cefa3b2ae89ba9dfb19c74d80cba1a52470b6bb2 226276 python3-biom-format-dbgsym_2.1.10-3_armhf.deb
cb5137016af55402a43aff02086788fdc5f339d0 123988 python3-biom-format_2.1.10-3_armhf.deb
Checksums-Sha256:
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dc0375f99fd61f54bb18fb1a5c2228b417d9a355d4a0fbd522e9c7d2c59f17c8 226276 python3-biom-format-dbgsym_2.1.10-3_armhf.deb
8a5cc4563ca8458147bed09653c6b1567cbae376ce768b7e565a33f6d42f974d 123988 python3-biom-format_2.1.10-3_armhf.deb
Files:
491f5d4aa131429386fef927cdb0f91e 9527 python optional python-biom-format_2.1.10-3_armhf.buildinfo
14750c31f6dfb4f66f46c958a1168fc3 226276 debug optional python3-biom-format-dbgsym_2.1.10-3_armhf.deb
201346faff3285bb75169f4b62b588e4 123988 python optional python3-biom-format_2.1.10-3_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-biom-format-dbgsym_2.1.10-3_armhf.deb
---------------------------------------------
new Debian package, version 2.0.
size 226276 bytes: control archive=704 bytes.
501 bytes, 12 lines control
417 bytes, 4 lines md5sums
Package: python3-biom-format-dbgsym
Source: python-biom-format
Version: 2.1.10-3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 267
Depends: python3-biom-format (= 2.1.10-3)
Section: debug
Priority: optional
Description: debug symbols for python3-biom-format
Build-Ids: 2a95e6e8d3068ee6a02b5fa1648de95f9f4bc9a3 5f76c7f685943197eec5a8f012a5f0fb3808f1d8 6523ed08b6b306d22464ce04c8e40335b4a8101e
drwxr-xr-x root/root 0 2021-12-03 16:21 ./
drwxr-xr-x root/root 0 2021-12-03 16:21 ./usr/
drwxr-xr-x root/root 0 2021-12-03 16:21 ./usr/lib/
drwxr-xr-x root/root 0 2021-12-03 16:21 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-12-03 16:21 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-12-03 16:21 ./usr/lib/debug/.build-id/2a/
-rw-r--r-- root/root 80668 2021-12-03 16:21 ./usr/lib/debug/.build-id/2a/95e6e8d3068ee6a02b5fa1648de95f9f4bc9a3.debug
drwxr-xr-x root/root 0 2021-12-03 16:21 ./usr/lib/debug/.build-id/5f/
-rw-r--r-- root/root 115428 2021-12-03 16:21 ./usr/lib/debug/.build-id/5f/76c7f685943197eec5a8f012a5f0fb3808f1d8.debug
drwxr-xr-x root/root 0 2021-12-03 16:21 ./usr/lib/debug/.build-id/65/
-rw-r--r-- root/root 49368 2021-12-03 16:21 ./usr/lib/debug/.build-id/65/23ed08b6b306d22464ce04c8e40335b4a8101e.debug
drwxr-xr-x root/root 0 2021-12-03 16:21 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2021-12-03 16:21 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 12176 2021-12-03 16:21 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug
drwxr-xr-x root/root 0 2021-12-03 16:21 ./usr/share/
drwxr-xr-x root/root 0 2021-12-03 16:21 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-12-03 16:21 ./usr/share/doc/python3-biom-format-dbgsym -> python3-biom-format
python3-biom-format_2.1.10-3_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 123988 bytes: control archive=2772 bytes.
1951 bytes, 36 lines control
4397 bytes, 48 lines md5sums
275 bytes, 12 lines * postinst #!/bin/sh
424 bytes, 12 lines * prerm #!/bin/sh
Package: python3-biom-format
Source: python-biom-format
Version: 2.1.10-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 699
Depends: python3-h5py, python3-numpy (>= 1:1.20.0), python3-numpy-abi9, cython3, python3 (<< 3.10), python3 (>= 3.9~), python3-click, python3-h5py-serial, python3-pandas, python3-scipy, python3:any, libc6 (>= 2.4)
Suggests: python-biom-format-doc
Breaks: biom-format-tools (<< 2.1.7+dfsg-3)
Replaces: biom-format-tools (<< 2.1.7+dfsg-3)
Provides: biom-format-tools
Section: python
Priority: optional
Homepage: https://biom-format.org/
Description: Biological Observation Matrix (BIOM) format (Python 3)
The BIOM file format (canonically pronounced biome) is designed to be a
general-use format for representing biological sample by observation
contingency tables. BIOM is a recognized standard for the Earth
Microbiome Project and is a Genomics Standards Consortium candidate
project.
.
The BIOM format is designed for general use in broad areas of
comparative -omics. For example, in marker-gene surveys, the primary use
of this format is to represent OTU tables: the observations in this case
are OTUs and the matrix contains counts corresponding to the number of
times each OTU is observed in each sample. With respect to metagenome
data, this format would be used to represent metagenome tables: the
observations in this case might correspond to SEED subsystems, and the
matrix would contain counts corresponding to the number of times each
subsystem is observed in each metagenome. Similarly, with respect to
genome data, this format may be used to represent a set of genomes: the
observations in this case again might correspond to SEED subsystems, and
the counts would correspond to the number of times each subsystem is
observed in each genome.
.
This package provides the BIOM format library for the Python 3 interpreter.
drwxr-xr-x root/root 0 2021-12-03 16:21 ./
drwxr-xr-x root/root 0 2021-12-03 16:21 ./usr/
drwxr-xr-x root/root 0 2021-12-03 16:21 ./usr/bin/
-rwxr-xr-x root/root 967 2021-12-03 16:21 ./usr/bin/biom
drwxr-xr-x root/root 0 2021-12-03 16:21 ./usr/lib/
drwxr-xr-x root/root 0 2021-12-03 16:21 ./usr/lib/python3/
drwxr-xr-x root/root 0 2021-12-03 16:21 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2021-12-03 16:21 ./usr/lib/python3/dist-packages/biom/
-rw-r--r-- root/root 3021 2021-12-03 16:21 ./usr/lib/python3/dist-packages/biom/__init__.py
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| Summary |
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Build Architecture: armhf
Build-Space: 110644
Build-Time: 287
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1377
Job: python-biom-format_2.1.10-3
Machine Architecture: armhf
Package: python-biom-format
Package-Time: 1731
Source-Version: 2.1.10-3
Space: 110644
Status: successful
Version: 2.1.10-3
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Finished at 2021-12-06T05:16:50Z
Build needed 00:28:51, 110644k disc space