python-biom-format →
2.1+dfsg-1 →
armhf → 2014-08-18 06:23:39
sbuild (Debian sbuild) 0.64.1 (13 Oct 2013) on testbuildd.raspbian.org
╔══════════════════════════════════════════════════════════════════════════════╗
║ python-biom-format 2.1+dfsg-1 (armhf) 18 Aug 2014 06:08 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: python-biom-format
Version: 2.1+dfsg-1
Source Version: 2.1+dfsg-1
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/python-biom-format-c50mTT/python-biom-format-2.1+dfsg' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/python-biom-format-c50mTT' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-6407dc5e-4201-4ec1-9f65-98860d2fb8de' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 jessie-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 jessie-staging/main Sources [7471 kB]
Get:3 http://172.17.0.1 jessie-staging/main armhf Packages [8520 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
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Checking available source versions...
Download source files with APT
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Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'python-biom-format' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/python-biom-format/trunk/
Need to get 127 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main python-biom-format 2.1+dfsg-1 (dsc) [2264 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main python-biom-format 2.1+dfsg-1 (tar) [118 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main python-biom-format 2.1+dfsg-1 (diff) [7128 B]
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-35od9g/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
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Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 60 not upgraded.
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12519 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), dh-python, dh-linktree, cython, python-dev, python-numpy, python-scipy, python-h5py, help2man, python-cogent, pyqi (>= 0.3.2), python-nose, python-tox, python-sphinx, python-setuptools, bash-completion
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), dh-python, dh-linktree, cython, python-dev, python-numpy, python-scipy, python-h5py, help2man, python-cogent, pyqi (>= 0.3.2), python-nose, python-tox, python-sphinx, python-setuptools, bash-completion
dpkg-deb: building package `sbuild-build-depends-python-biom-format-dummy' in `/«BUILDDIR»/resolver-8G1vMw/apt_archive/sbuild-build-depends-python-biom-format-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install python-biom-format build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bash-completion bsdmainutils ca-certificates cpp-4.9 cython debhelper
dh-linktree dh-python docutils-common file g++-4.9 gcc-4.9 gcc-4.9-base
gettext gettext-base groff-base help2man intltool-debian libamd2.3.1
libasan1 libasprintf0c2 libatomic1 libblas3 libcamd2.3.1 libccolamd2.8.0
libcholmod2.1.2 libcolamd2.8.0 libcroco3 libexpat1 libexpat1-dev libffi6
libgcc-4.9-dev libgcc1 libgfortran3 libglib2.0-0 libgomp1 libhdf5-7
libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3
liblocale-gettext-perl libmagic1 libmpdec2 libpipeline1 libpython-dev
libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-stdlib libpython3.4-minimal
libpython3.4-stdlib libsqlite3-0 libssl1.0.0 libstdc++-4.9-dev libstdc++6
libubsan0 libumfpack5.6.2 libunistring0 libxml2 man-db mime-support openssl
po-debconf pyqi python python-chardet-whl python-cogent python-colorama-whl
python-decorator python-dev python-distlib-whl python-docutils python-h5py
python-html5lib-whl python-jinja2 python-markupsafe python-minimal
python-nose python-numpy python-pip-whl python-pkg-resources python-pygments
python-requests-whl python-roman python-scipy python-setuptools
python-setuptools-whl python-six python-six-whl python-sphinx python-tox
python-urllib3-whl python2.7 python2.7-dev python2.7-minimal python3
python3-minimal python3-pkg-resources python3-py python3-virtualenv
python3.4 python3.4-minimal sgml-base sphinx-common virtualenv xml-core
Suggested packages:
wamerican wordlist whois vacation gcc-4.9-locales dh-make gcc-4.9-doc
libstdc++6-4.9-dbg libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg
libasan1-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libvtv0-dbg
libcilkrts5-dbg libquadmath-dbg gettext-doc groff libstdc++-4.9-doc less
www-browser libmail-box-perl python-doc python-tk python-cogent-doc
texlive-latex-recommended texlive-latex-base texlive-lang-french
fonts-linuxlibertine ttf-linux-libertine python-jinja2-doc python-coverage
python-nose-doc gfortran python-numpy-dbg python-numpy-doc python-distribute
python-distribute-doc ttf-bitstream-vera jsmath libjs-mathjax dvipng
texlive-latex-extra texlive-fonts-recommended python2.7-doc binfmt-support
python3-doc python3-tk python3-venv python3-setuptools subversion
python3-pytest python3.4-venv python3.4-doc sgml-base-doc
Recommended packages:
curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
libglib2.0-data shared-mime-info javascript-common libmail-sendmail-perl
python-pil libpaper-utils docutils-doc python-chardet python-imaging
sphinx-doc
The following NEW packages will be installed:
bash-completion bsdmainutils ca-certificates cython debhelper dh-linktree
dh-python docutils-common file gettext gettext-base groff-base help2man
intltool-debian libamd2.3.1 libasprintf0c2 libblas3 libcamd2.3.1
libccolamd2.8.0 libcholmod2.1.2 libcolamd2.8.0 libcroco3 libexpat1
libexpat1-dev libffi6 libgfortran3 libglib2.0-0 libhdf5-7 libjs-jquery
libjs-sphinxdoc libjs-underscore liblapack3 liblocale-gettext-perl libmagic1
libmpdec2 libpipeline1 libpython-dev libpython-stdlib libpython2.7
libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib
libpython3.4-minimal libpython3.4-stdlib libsqlite3-0 libssl1.0.0
libumfpack5.6.2 libunistring0 libxml2 man-db mime-support openssl po-debconf
pyqi python python-chardet-whl python-cogent python-colorama-whl
python-decorator python-dev python-distlib-whl python-docutils python-h5py
python-html5lib-whl python-jinja2 python-markupsafe python-minimal
python-nose python-numpy python-pip-whl python-pkg-resources python-pygments
python-requests-whl python-roman python-scipy python-setuptools
python-setuptools-whl python-six python-six-whl python-sphinx python-tox
python-urllib3-whl python2.7 python2.7-dev python2.7-minimal python3
python3-minimal python3-pkg-resources python3-py python3-virtualenv
python3.4 python3.4-minimal sbuild-build-depends-python-biom-format-dummy
sgml-base sphinx-common virtualenv xml-core
The following packages will be upgraded:
cpp-4.9 g++-4.9 gcc-4.9 gcc-4.9-base libasan1 libatomic1 libgcc-4.9-dev
libgcc1 libgomp1 libstdc++-4.9-dev libstdc++6 libubsan0
12 upgraded, 98 newly installed, 0 to remove and 48 not upgraded.
Need to get 87.0 MB/87.0 MB of archives.
After this operation, 177 MB of additional disk space will be used.
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Get:50 http://172.17.0.1/private/ jessie-staging/main sgml-base all 1.26+nmu4 [14.6 kB]
Get:51 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.19-1 [57.7 kB]
Get:52 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.19.2-1 [116 kB]
Get:53 http://172.17.0.1/private/ jessie-staging/main python2.7 armhf 2.7.8-4 [243 kB]
Get:54 http://172.17.0.1/private/ jessie-staging/main python-minimal armhf 2.7.8-1 [39.8 kB]
Get:55 http://172.17.0.1/private/ jessie-staging/main libpython-stdlib armhf 2.7.8-1 [19.2 kB]
Get:56 http://172.17.0.1/private/ jessie-staging/main python armhf 2.7.8-1 [150 kB]
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Get:59 http://172.17.0.1/private/ jessie-staging/main cython armhf 0.20.1+git90-g0e6e38e-1 [1287 kB]
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Get:108 http://172.17.0.1/private/ jessie-staging/main python-cogent armhf 1.5.3-2 [1255 kB]
Get:109 http://172.17.0.1/private/ jessie-staging/main python-scipy armhf 0.13.3-2 [7180 kB]
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update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libcolamd2.8.0:armhf (1:4.2.1-3) ...
Setting up liblapack3 (3.5.0-3) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up libcholmod2.1.2:armhf (1:4.2.1-3) ...
Setting up libglib2.0-0:armhf (2.40.0-4) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.8-2) ...
Setting up libhdf5-7:armhf (1.8.12+docs-1.1+b1) ...
Setting up libmpdec2:armhf (2.4.0-6) ...
Setting up libexpat1-dev:armhf (2.1.0-6) ...
Setting up libpython2.7-dev:armhf (2.7.8-4) ...
Setting up libpython3.4-minimal:armhf (3.4.1-9) ...
Setting up libpython3.4-stdlib:armhf (3.4.1-9) ...
Setting up libumfpack5.6.2:armhf (1:4.2.1-3) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up python3.4-minimal (3.4.1-9) ...
Setting up sgml-base (1.26+nmu4) ...
Setting up file (1:5.19-1) ...
Setting up gettext-base (0.19.2-1) ...
Setting up python2.7 (2.7.8-4) ...
Setting up python-minimal (2.7.8-1) ...
Setting up libpython-stdlib:armhf (2.7.8-1) ...
Setting up python (2.7.8-1) ...
Setting up openssl (1.0.1i-2) ...
Setting up ca-certificates (20140325) ...
Setting up cython (0.20.1+git90-g0e6e38e-1) ...
Setting up gettext (0.19.2-1) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu3) ...
Setting up debhelper (9.20140809) ...
Setting up dh-linktree (0.4) ...
Setting up python3.4 (3.4.1-9) ...
Setting up python3-minimal (3.4.1-1) ...
Setting up libpython3-stdlib:armhf (3.4.1-1) ...
Setting up xml-core (0.13+nmu2) ...
Setting up help2man (1.46.1) ...
Setting up libjs-jquery (1.7.2+dfsg-3) ...
Setting up libjs-underscore (1.4.4-2) ...
Setting up libjs-sphinxdoc (1.2.2+dfsg-2) ...
Setting up libpython-dev:armhf (2.7.8-1) ...
Setting up sphinx-common (1.2.2+dfsg-2) ...
Setting up pyqi (0.3.2+dfsg-1) ...
Setting up python-colorama-whl (0.3.1-0.1) ...
Setting up python-decorator (3.4.0-2) ...
Setting up python2.7-dev (2.7.8-4) ...
Setting up python-dev (2.7.8-1) ...
Setting up python-distlib-whl (0.1.9-1) ...
Setting up python-roman (2.0.0-1) ...
Setting up python-numpy (1:1.8.1-1) ...
Setting up python-h5py (2.2.1-1.1) ...
Setting up python-html5lib-whl (0.999-3) ...
Setting up python-markupsafe (0.23-1) ...
Setting up python-jinja2 (2.7.3-1) ...
Setting up python-pkg-resources (5.5.1-1) ...
Setting up python-nose (1.3.3-1) ...
Setting up python-six-whl (1.7.3-1) ...
Setting up python-urllib3-whl (1.8.3-1) ...
Setting up python-requests-whl (2.3.0-1) ...
Setting up python-setuptools-whl (5.5.1-1) ...
Setting up python-pygments (1.6+dfsg-1) ...
Setting up python-setuptools (5.5.1-1) ...
Setting up python-six (1.7.3-1) ...
Setting up python-cogent (1.5.3-2) ...
Setting up python-scipy (0.13.3-2) ...
Processing triggers for sgml-base (1.26+nmu4) ...
Setting up docutils-common (0.12+dfsg-1) ...
Processing triggers for sgml-base (1.26+nmu4) ...
Setting up python-docutils (0.12+dfsg-1) ...
update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python-sphinx (1.2.2+dfsg-2) ...
Setting up python3 (3.4.1-1) ...
Setting up dh-python (1.20140511-1) ...
Setting up python3-pkg-resources (5.5.1-1) ...
Setting up python-chardet-whl (2.2.1-2) ...
Setting up python-pip-whl (1.5.6-2) ...
Setting up python3-py (1.4.23-1) ...
Setting up python3-virtualenv (1.11.6-2) ...
Setting up virtualenv (1.11.6-2) ...
Setting up python-tox (1.7.1-3) ...
Setting up sbuild-build-depends-python-biom-format-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.19-7) ...
Processing triggers for ca-certificates (20140325) ...
Updating certificates in /etc/ssl/certs... 168 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d....done.
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.15-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.24.51.20140617-1 dpkg-dev_1.17.10 g++-4.6_4.6.4-5+rpi1 g++-4.9_4.9.1-4 gcc-4.6_4.6.4-5+rpi1 gcc-4.8_4.8.3-4 gcc-4.9_4.9.1-4 libc6-dev_2.19-7 libstdc++-4.9-dev_4.9.1-4 libstdc++6_4.9.1-4 libstdc++6-4.6-dev_4.6.4-5+rpi1 linux-libc-dev_3.14.4-1+rpi1
Package versions: apt_1.0.6 base-files_7.3+rpi1 base-passwd_3.5.28 bash_4.3-7 bash-completion_1:2.1-4 binutils_2.24.51.20140617-1 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.8 build-essential_11.6 bzip2_1.0.6-5 ca-certificates_20140325 coreutils_8.21-1.2 cpio_2.11+dfsg-2 cpp_4:4.9.0-4 cpp-4.6_4.6.4-5+rpi1 cpp-4.8_4.8.3-4 cpp-4.9_4.9.1-4 cython_0.20.1+git90-g0e6e38e-1 dash_0.5.7-4 debconf_1.5.53 debfoster_2.7-1.2 debhelper_9.20140809 debianutils_4.4 dh-linktree_0.4 dh-python_1.20140511-1 diffutils_1:3.3-1 docutils-common_0.12+dfsg-1 dpkg_1.17.10 dpkg-dev_1.17.10 e2fslibs_1.42.10-1.1 e2fsprogs_1.42.10-1.1 fakeroot_1.18.4-2 file_1:5.19-1 findutils_4.4.2-9 g++_4:4.9.0-4 g++-4.6_4.6.4-5+rpi1 g++-4.9_4.9.1-4 gcc_4:4.9.0-4 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.4-5+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8_4.8.3-4 gcc-4.8-base_4.8.3-4 gcc-4.9_4.9.1-4 gcc-4.9-base_4.9.1-4 gettext_0.19.2-1 gettext-base_0.19.2-1 gnupg_1.4.18-2 gpgv_1.4.18-2 grep_2.18-2 groff-base_1.22.2-6 gzip_1.6-3 help2man_1.46.1 hostname_3.15 init-system-helpers_1.19 initramfs-tools_0.115 initscripts_2.88dsf-53.2 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.3-1+rpi1 kmod_16-2 libacl1_2.2.52-1 libamd2.3.1_1:4.2.1-3 libapt-pkg4.12_1.0.6 libarchive-extract-perl_0.72-1 libasan0_4.8.3-4 libasan1_4.9.1-4 libasprintf0c2_0.19.2-1 libatomic1_4.9.1-4 libattr1_1:2.4.47-1 libaudit-common_1:2.3.7-1 libaudit1_1:2.3.7-1 libblas3_1.2.20110419-7 libblkid1_2.20.1-5.8 libbz2-1.0_1.0.6-5 libc-bin_2.19-7 libc-dev-bin_2.19-7 libc6_2.19-7 libc6-dev_2.19-7 libcamd2.3.1_1:4.2.1-3 libcap2_1:2.22-1.2 libccolamd2.8.0_1:4.2.1-3 libcholmod2.1.2_1:4.2.1-3 libclass-isa-perl_0.36-5 libcloog-isl4_0.18.2-1 libcolamd2.8.0_1:4.2.1-3 libcomerr2_1.42.10-1.1 libcroco3_0.6.8-2 libdb5.1_5.1.29-6 libdb5.3_5.3.28-5 libdbus-1-3_1.8.6-1 libdpkg-perl_1.17.10 libexpat1_2.1.0-6 libexpat1-dev_2.1.0-6 libffi6_3.1-2 libgc1c2_1:7.2d-6 libgcc-4.8-dev_4.8.3-4 libgcc-4.9-dev_4.9.1-4 libgcc1_1:4.9.1-4 libgdbm3_1.8.3-12 libgfortran3_4.9.1-4 libglib2.0-0_2.40.0-4 libgmp10_2:6.0.0+dfsg-4+rpi1 libgomp1_4.9.1-4 libhdf5-7_1.8.12+docs-1.1+b1 libisl10_0.12.2-2 libjs-jquery_1.7.2+dfsg-3 libjs-sphinxdoc_1.2.2+dfsg-2 libjs-underscore_1.4.4-2 libklibc_2.0.3-1+rpi1 libkmod2_16-2 liblapack3_3.5.0-3 liblocale-gettext-perl_1.05-8 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.19-1 libmodule-pluggable-perl_5.1-1 libmount1_2.20.1-5.8 libmpc2_0.9-4 libmpc3_1.0.2-1 libmpdec2_2.4.0-6 libmpfr4_3.1.2-1 libncurses5_5.9+20140118-1 libncursesw5_5.9+20140118-1 libpam-modules_1.1.8-3 libpam-modules-bin_1.1.8-3 libpam-runtime_1.1.8-3 libpam0g_1.1.8-3 libpcre3_1:8.31-5 libpipeline1_1.3.0-1 libpod-latex-perl_0.61-1 libprocps0_1:3.3.4-2 libprocps3_1:3.3.9-5 libpython-dev_2.7.8-1 libpython-stdlib_2.7.8-1 libpython2.7_2.7.8-4 libpython2.7-dev_2.7.8-4 libpython2.7-minimal_2.7.8-4 libpython2.7-stdlib_2.7.8-4 libpython3-stdlib_3.4.1-1 libpython3.4-minimal_3.4.1-9 libpython3.4-stdlib_3.4.1-9 libreadline6_6.3-6 libselinux1_2.3-1 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-1 libslang2_2.2.4-17 libsqlite3-0_3.8.5-2 libss2_1.42.10-1.1 libssl1.0.0_1.0.1i-2 libstdc++-4.9-dev_4.9.1-4 libstdc++6_4.9.1-4 libstdc++6-4.6-dev_4.6.4-5+rpi1 libswitch-perl_2.17-1 libtimedate-perl_2.3000-2 libtinfo5_5.9+20140118-1 libubsan0_4.9.1-4 libudev0_175-7.2 libudev1_204-14 libumfpack5.6.2_1:4.2.1-3 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-24 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.8 libxml2_2.9.1+dfsg1-4 linux-libc-dev_3.14.4-1+rpi1 login_1:4.2-2 lsb-base_4.1+Debian13+rpi1 make_4.0-8 makedev_2.3.1-93 man-db_2.6.7.1-1 mawk_1.3.3-17 mime-support_3.56 mount_2.20.1-5.8 multiarch-support_2.19-7 nano_2.2.6-1.1 ncurses-base_5.9+20140118-1 ncurses-bin_5.9+20140118-1 openssl_1.0.1i-2 passwd_1:4.2-2 patch_2.7.1-5 perl_5.18.2-6 perl-base_5.18.2-6 perl-modules_5.18.2-6 plymouth_0.9.0-4 po-debconf_1.0.16+nmu3 procps_1:3.3.9-5 pyqi_0.3.2+dfsg-1 python_2.7.8-1 python-chardet-whl_2.2.1-2 python-cogent_1.5.3-2 python-colorama-whl_0.3.1-0.1 python-decorator_3.4.0-2 python-dev_2.7.8-1 python-distlib-whl_0.1.9-1 python-docutils_0.12+dfsg-1 python-h5py_2.2.1-1.1 python-html5lib-whl_0.999-3 python-jinja2_2.7.3-1 python-markupsafe_0.23-1 python-minimal_2.7.8-1 python-nose_1.3.3-1 python-numpy_1:1.8.1-1 python-pip-whl_1.5.6-2 python-pkg-resources_5.5.1-1 python-pygments_1.6+dfsg-1 python-requests-whl_2.3.0-1 python-roman_2.0.0-1 python-scipy_0.13.3-2 python-setuptools_5.5.1-1 python-setuptools-whl_5.5.1-1 python-six_1.7.3-1 python-six-whl_1.7.3-1 python-sphinx_1.2.2+dfsg-2 python-tox_1.7.1-3 python-urllib3-whl_1.8.3-1 python2.7_2.7.8-4 python2.7-dev_2.7.8-4 python2.7-minimal_2.7.8-4 python3_3.4.1-1 python3-minimal_3.4.1-1 python3-pkg-resources_5.5.1-1 python3-py_1.4.23-1 python3-virtualenv_1.11.6-2 python3.4_3.4.1-9 python3.4-minimal_3.4.1-9 raspbian-archive-keyring_20120528.2 readline-common_6.3-6 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-biom-format-dummy_0.invalid.0 sed_4.2.2-4 sensible-utils_0.0.9 sgml-base_1.26+nmu4 sphinx-common_1.2.2+dfsg-2 startpar_0.59-3 sysv-rc_2.88dsf-53.2 sysvinit_2.88dsf-53.2 sysvinit-core_2.88dsf-53.2 sysvinit-utils_2.88dsf-53.2 tar_1.27.1-2 tzdata_2014e-1 udev_204-14 util-linux_2.20.1-5.8 virtualenv_1.11.6-2 xml-core_0.13+nmu2 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1+rpi1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Tue Aug 12 12:51:59 2014 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./python-biom-format_2.1+dfsg-1.dsc
dpkg-source: info: extracting python-biom-format in python-biom-format-2.1+dfsg
dpkg-source: info: unpacking python-biom-format_2.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking python-biom-format_2.1+dfsg-1.debian.tar.xz
dpkg-source: info: applying ignore_local_dist-packages.patch
dpkg-source: info: applying no-web-adds.patch
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=111
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-6407dc5e-4201-4ec1-9f65-98860d2fb8de
SCHROOT_UID=106
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package python-biom-format
dpkg-buildpackage: source version 2.1+dfsg-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build python-biom-format-2.1+dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2 --buildsystem=pybuild --with linktree
dh_testdir -O--buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/«BUILDDIR»/python-biom-format-2.1+dfsg'
rm -rf build/tests
dh_auto_clean
I: pybuild base:170: python2.7 setup.py clean
running clean
removing '/«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
find -name "._*" -delete #Remove any Mac metadata files
make --directory=doc clean
make[2]: Entering directory '/«BUILDDIR»/python-biom-format-2.1+dfsg/doc'
rm -rf _build/* documentation/generated
make[2]: Leaving directory '/«BUILDDIR»/python-biom-format-2.1+dfsg/doc'
rm -f debian/bash-completion
rm -f python-code/support-code/_*.cpp
make[1]: Leaving directory '/«BUILDDIR»/python-biom-format-2.1+dfsg'
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch --with python2 --buildsystem=pybuild --with linktree
dh_testdir -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:170: python2.7 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/«BUILDDIR»/python-biom-format-2.1+dfsg'
USE_CYTHON=true dh_auto_build
I: pybuild base:170: /usr/bin/python setup.py build
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
Cythonizing biom/_filter.pyx
Cythonizing biom/_subsample.pyx
Cythonizing biom/_transform.pyx
running build
running build_py
creating /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/err.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/exception.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/parse.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/table.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/util.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/__init__.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom
creating /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands
copying biom/commands/__init__.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands
copying biom/commands/installation_informer.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands
copying biom/commands/metadata_adder.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands
copying biom/commands/table_converter.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands
copying biom/commands/table_subsetter.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands
copying biom/commands/table_summarizer.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands
copying biom/commands/table_validator.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands
creating /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces
copying biom/interfaces/__init__.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces
creating /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse
copying biom/interfaces/optparse/__init__.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse
copying biom/interfaces/optparse/input_handler.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse
copying biom/interfaces/optparse/output_handler.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse
creating /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config
copying biom/interfaces/optparse/config/__init__.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config
copying biom/interfaces/optparse/config/add_metadata.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config
copying biom/interfaces/optparse/config/convert.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config
copying biom/interfaces/optparse/config/show_install_info.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config
copying biom/interfaces/optparse/config/subset_table.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config
copying biom/interfaces/optparse/config/summarize_table.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config
copying biom/interfaces/optparse/config/validate_table.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config
creating /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html
copying biom/interfaces/html/__init__.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html
copying biom/interfaces/html/input_handler.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html
copying biom/interfaces/html/output_handler.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html
creating /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config
copying biom/interfaces/html/config/__init__.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config
copying biom/interfaces/html/config/add_metadata.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config
copying biom/interfaces/html/config/convert.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config
copying biom/interfaces/html/config/show_install_info.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config
copying biom/interfaces/html/config/summarize_table.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config
copying biom/interfaces/html/config/validate_table.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config
running build_ext
building 'biom._filter' extension
creating build
creating build/temp.linux-armv7l-2.7
creating build/temp.linux-armv7l-2.7/biom
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c biom/_filter.c -o build/temp.linux-armv7l-2.7/biom/_filter.o
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_filter.c:352:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_filter.c:352:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:327:0,
from biom/_filter.c:353:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/biom/_filter.o -o /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/_filter.so
building 'biom._transform' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c biom/_transform.c -o build/temp.linux-armv7l-2.7/biom/_transform.o
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_transform.c:352:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_transform.c:352:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:327:0,
from biom/_transform.c:353:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/biom/_transform.o -o /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/_transform.so
building 'biom._subsample' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c biom/_subsample.c -o build/temp.linux-armv7l-2.7/biom/_subsample.o
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_subsample.c:352:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_subsample.c:352:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:327:0,
from biom/_subsample.c:353:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/biom/_subsample.o -o /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/_subsample.so
running build_scripts
creating build/scripts-2.7
copying scripts/serve-biom -> build/scripts-2.7
copying scripts/biom -> build/scripts-2.7
changing mode of build/scripts-2.7/serve-biom from 644 to 755
DEB_BUILD_OPTIONS= pybuild -s custom -p 2.7 --test --test-args 'make --directory=doc singlehtml'
I: pybuild base:170: make --directory=doc singlehtml
make[2]: Entering directory '/«BUILDDIR»/python-biom-format-2.1+dfsg/doc'
sphinx-build -b singlehtml -d _build/doctrees -W . _build/singlehtml
Making output directory...
Running Sphinx v1.2.2
loading pickled environment... not yet created
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
[autosummary] generating autosummary for: /«BUILDDIR»/python-biom-format-2.1+dfsg/doc/documentation/generated/biom.load_table.rst, /«BUILDDIR»/python-biom-format-2.1+dfsg/doc/documentation/generated/biom.table.Table.rst
[autosummary] generating autosummary for: /«BUILDDIR»/python-biom-format-2.1+dfsg/doc/documentation/generated/biom.table.Table.__eq__.rst, /«BUILDDIR»/python-biom-format-2.1+dfsg/doc/documentation/generated/biom.table.Table.__format__.rst, /«BUILDDIR»/python-biom-format-2.1+dfsg/doc/documentation/generated/biom.table.Table.__getitem__.rst, /«BUILDDIR»/python-biom-format-2.1+dfsg/doc/documentation/generated/biom.table.Table.__init__.rst, /«BUILDDIR»/python-biom-format-2.1+dfsg/doc/documentation/generated/biom.table.Table.__iter__.rst, /«BUILDDIR»/python-biom-format-2.1+dfsg/doc/documentation/generated/biom.table.Table.__ne__.rst, /«BUILDDIR»/python-biom-format-2.1+dfsg/doc/documentation/generated/biom.table.Table.__new__.rst, /«BUILDDIR»/python-biom-format-2.1+dfsg/doc/documentation/generated/biom.table.Table.__reduce__.rst, /«BUILDDIR»/python-biom-format-2.1+dfsg/doc/documentation/generated/biom.table.Table.__reduce_ex__.rst, /«BUILDDIR»/python-biom-format-2.1+dfsg/doc/documentation/generated/biom.table.Table.__repr__.rst, ..., /«BUILDDIR»/python-biom-format-2.1+dfsg/doc/documentation/generated/biom.table.Table.shape.rst, /«BUILDDIR»/python-biom-format-2.1+dfsg/doc/documentation/generated/biom.table.Table.sort.rst, /«BUILDDIR»/python-biom-format-2.1+dfsg/doc/documentation/generated/biom.table.Table.sort_order.rst, /«BUILDDIR»/python-biom-format-2.1+dfsg/doc/documentation/generated/biom.table.Table.subsample.rst, /«BUILDDIR»/python-biom-format-2.1+dfsg/doc/documentation/generated/biom.table.Table.sum.rst, /«BUILDDIR»/python-biom-format-2.1+dfsg/doc/documentation/generated/biom.table.Table.to_hdf5.rst, /«BUILDDIR»/python-biom-format-2.1+dfsg/doc/documentation/generated/biom.table.Table.to_json.rst, /«BUILDDIR»/python-biom-format-2.1+dfsg/doc/documentation/generated/biom.table.Table.to_tsv.rst, /«BUILDDIR»/python-biom-format-2.1+dfsg/doc/documentation/generated/biom.table.Table.transform.rst, /«BUILDDIR»/python-biom-format-2.1+dfsg/doc/documentation/generated/biom.table.Table.transpose.rst
building [singlehtml]: all documents
updating environment: 88 added, 0 changed, 0 removed
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reading sources... [ 2%] documentation/adding_metadata
reading sources... [ 3%] documentation/biom_conversion
reading sources... [ 4%] documentation/biom_format
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looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
assembling single document... documentation/index documentation/biom_format documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 documentation/format_versions/biom-2.1 documentation/quick_usage_examples documentation/generated/biom.load_table documentation/table_objects documentation/generated/biom.table.Table documentation/generated/biom.table.Table.dtype documentation/generated/biom.table.Table.matrix_data documentation/generated/biom.table.Table.nnz documentation/generated/biom.table.Table.shape documentation/generated/biom.table.Table.__getitem__ documentation/generated/biom.table.Table._extract_data_from_tsv documentation/generated/biom.table.Table.add_group_metadata documentation/generated/biom.table.Table.add_metadata documentation/generated/biom.table.Table.collapse documentation/generated/biom.table.Table.copy documentation/generated/biom.table.Table.data documentation/generated/biom.table.Table.delimited_self documentation/generated/biom.table.Table.descriptive_equality documentation/generated/biom.table.Table.exists documentation/generated/biom.table.Table.filter documentation/generated/biom.table.Table.from_hdf5 documentation/generated/biom.table.Table.from_json documentation/generated/biom.table.Table.from_tsv documentation/generated/biom.table.Table.get_table_density documentation/generated/biom.table.Table.get_value_by_ids documentation/generated/biom.table.Table.group_metadata documentation/generated/biom.table.Table.ids documentation/generated/biom.table.Table.index documentation/generated/biom.table.Table.is_empty documentation/generated/biom.table.Table.iter documentation/generated/biom.table.Table.iter_data documentation/generated/biom.table.Table.iter_pairwise documentation/generated/biom.table.Table.max documentation/generated/biom.table.Table.merge documentation/generated/biom.table.Table.metadata documentation/generated/biom.table.Table.min documentation/generated/biom.table.Table.nonzero documentation/generated/biom.table.Table.nonzero_counts documentation/generated/biom.table.Table.norm documentation/generated/biom.table.Table.pa documentation/generated/biom.table.Table.partition documentation/generated/biom.table.Table.reduce documentation/generated/biom.table.Table.sort documentation/generated/biom.table.Table.sort_order documentation/generated/biom.table.Table.subsample documentation/generated/biom.table.Table.sum documentation/generated/biom.table.Table.to_hdf5 documentation/generated/biom.table.Table.to_json documentation/generated/biom.table.Table.to_tsv documentation/generated/biom.table.Table.transform documentation/generated/biom.table.Table.transpose documentation/biom_conversion documentation/adding_metadata documentation/summarizing_biom_tables BIOM_LICENSE
writing... done
writing additional files...
copying images... [100%] _static/biom-format.png
copying static files... done
copying extra files... done
dumping object inventory... done
build succeeded.
Build finished. The HTML page is in _build/singlehtml.
make[2]: Leaving directory '/«BUILDDIR»/python-biom-format-2.1+dfsg/doc'
DEB_BUILD_OPTIONS= pybuild -s custom -p 2.7 --test --test-args 'pyqi make-bash-completion \
--command-config-module biom.interfaces.optparse.config \
--driver-name biom -o debian/bash-completion'
I: pybuild base:170: pyqi make-bash-completion \
--command-config-module biom.interfaces.optparse.config \
--driver-name biom -o debian/bash-completion
make[1]: Leaving directory '/«BUILDDIR»/python-biom-format-2.1+dfsg'
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:170: cd /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build; python2.7 -m nose --with-doctest
.....................................
----------------------------------------------------------------------
Ran 37 tests in 2.662s
OK
fakeroot debian/rules binary-arch
dh binary-arch --with python2 --buildsystem=pybuild --with linktree
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:170: /usr/bin/python setup.py install --root /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format
running install
running build
running build_py
running build_ext
running build_scripts
running install_lib
creating /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr
creating /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib
creating /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7
creating /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages
creating /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/err.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/exception.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/parse.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/table.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/util.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/__init__.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
creating /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/__init__.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/installation_informer.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/metadata_adder.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/table_converter.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/table_subsetter.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/table_summarizer.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/table_validator.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/__init__.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/metadata_adder.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/table_converter.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/installation_informer.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/table_subsetter.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/table_summarizer.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/table_validator.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
creating /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/__init__.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces
creating /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/__init__.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/input_handler.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/output_handler.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse
creating /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/__init__.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/add_metadata.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/convert.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/show_install_info.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/subset_table.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/summarize_table.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/validate_table.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/__init__.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/add_metadata.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/convert.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/show_install_info.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/subset_table.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/summarize_table.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/validate_table.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/__init__.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/input_handler.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/output_handler.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse
creating /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/__init__.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/input_handler.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/output_handler.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html
creating /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config/__init__.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config/add_metadata.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config/convert.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config/show_install_info.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config/summarize_table.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config/validate_table.py -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config/__init__.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config/add_metadata.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config/convert.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config/show_install_info.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config/summarize_table.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config/validate_table.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/__init__.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/input_handler.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/output_handler.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/__init__.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/_filter.so -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/_transform.so -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/_subsample.so -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/__init__.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/table.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/exception.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/util.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/err.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1+dfsg/.pybuild/pythonX.Y_2.7/build/biom/parse.pyc -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
running install_egg_info
running egg_info
creating biom_format.egg-info
writing requirements to biom_format.egg-info/requires.txt
writing biom_format.egg-info/PKG-INFO
writing top-level names to biom_format.egg-info/top_level.txt
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
writing manifest file 'biom_format.egg-info/SOURCES.txt'
Copying biom_format.egg-info to /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom_format-2.1.egg-info
running install_scripts
creating /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/bin
copying build/scripts-2.7/serve-biom -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/bin
copying build/scripts-2.7/biom -> /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/bin
changing mode of /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/bin/serve-biom to 755
changing mode of /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/bin/biom to 755
debian/rules override_dh_install
make[1]: Entering directory '/«BUILDDIR»/python-biom-format-2.1+dfsg'
dh_install
dh_bash-completion
dh_bash-completion: file-list parsing failed, installing as proper snippet
# All *.py scripts simply say
# "This script no longer exists. ..."
rm -f /«BUILDDIR»/python-biom-format-2.1+dfsg/debian/python-biom-format/usr/bin/*.py
make[1]: Leaving directory '/«BUILDDIR»/python-biom-format-2.1+dfsg'
dh_installdocs -a -O--buildsystem=pybuild
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[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
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python-biom-format_2.1+dfsg-1_armhf.changes:
────────────────────────────────────────────
Format: 1.8
Date: Tue, 12 Aug 2014 14:43:54 +0200
Source: python-biom-format
Binary: python-biom-format
Architecture: armhf
Version: 2.1+dfsg-1
Distribution: jessie-staging
Urgency: medium
Maintainer: Raspbian nitrogen6x test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
python-biom-format - Biological Observation Matrix (BIOM) format
Changes:
python-biom-format (2.1+dfsg-1) unstable; urgency=medium
.
* New upstream version
Checksums-Sha1:
af406676ad94a314796396538caa361eb52eaa37 205308 python-biom-format_2.1+dfsg-1_armhf.deb
Checksums-Sha256:
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Files:
4b5e1ed75a1a473caae46f91d9f5ac95 205308 python optional python-biom-format_2.1+dfsg-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
python-biom-format_2.1+dfsg-1_armhf.deb
───────────────────────────────────────
new debian package, version 2.0.
size 205308 bytes: control archive=4208 bytes.
42 bytes, 1 lines conffiles
1657 bytes, 29 lines control
8886 bytes, 94 lines md5sums
166 bytes, 9 lines * postinst #!/bin/sh
271 bytes, 14 lines * prerm #!/bin/sh
Package: python-biom-format
Version: 2.1+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 805
Depends: pyqi (>= 0.3.2), python-scipy, python-numpy, python (<< 2.8), python:any (>= 2.7.5-5~), python (>= 2.7~), sphinx-common (>= 1.2.2+dfsg), libc6 (>= 2.4), python-cogent, python-h5py
Section: python
Priority: optional
Homepage: http://biom-format.org/
Description: Biological Observation Matrix (BIOM) format
The BIOM file format (canonically pronounced biome) is designed to be a
general-use format for representing biological sample by observation
contingency tables. BIOM is a recognized standard for the Earth
Microbiome Project and is a Genomics Standards Consortium candidate
project.
.
The BIOM format is designed for general use in broad areas of
comparative -omics. For example, in marker-gene surveys, the primary use
of this format is to represent OTU tables: the observations in this case
are OTUs and the matrix contains counts corresponding to the number of
times each OTU is observed in each sample. With respect to metagenome
data, this format would be used to represent metagenome tables: the
observations in this case might correspond to SEED subsystems, and the
matrix would contain counts corresponding to the number of times each
subsystem is observed in each metagenome. Similarly, with respect to
genome data, this format may be used to represent a set of genomes: the
observations in this case again might correspond to SEED subsystems, and
the counts would correspond to the number of times each subsystem is
observed in each genome.
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lrwxrwxrwx root/root 0 2014-08-18 06:23 ./usr/share/doc/python-biom-format/html/_static/websupport.js -> ../../../../sphinx/themes/basic/static/websupport.js
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│ Post Build │
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
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Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
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│ Summary │
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Build Architecture: armhf
Build-Space: 8520
Build-Time: 192
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 647
Job: python-biom-format_2.1+dfsg-1
Machine Architecture: armhf
Package: python-biom-format
Package-Time: 895
Source-Version: 2.1+dfsg-1
Space: 8520
Status: successful
Version: 2.1+dfsg-1
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Finished at 20140818-0623
Build needed 00:14:55, 8520k disc space