pymol →
2.5.0+dfsg-1 →
armhf → 2021-12-21 06:17:41
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| pymol 2.5.0+dfsg-1 (armhf) Tue, 21 Dec 2021 05:53:06 +0000 |
+==============================================================================+
Package: pymol
Version: 2.5.0+dfsg-1
Source Version: 2.5.0+dfsg-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-831a7dbc-e015-4b0b-9c4f-5d2fdb779d1f' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [12.6 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.5 MB]
Fetched 26.2 MB in 11s (2492 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'pymol' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/debichem-team/pymol.git
Please use:
git clone https://salsa.debian.org/debichem-team/pymol.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 6957 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main pymol 2.5.0+dfsg-1 (dsc) [2293 B]
Get:2 http://172.17.4.1/private bookworm-staging/main pymol 2.5.0+dfsg-1 (tar) [6897 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main pymol 2.5.0+dfsg-1 (diff) [57.3 kB]
Fetched 6957 kB in 1s (4733 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pymol-wN4QPF/pymol-2.5.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pymol-wN4QPF' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-1FryUA/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-1FryUA/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-1FryUA/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-1FryUA/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-1FryUA/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-1FryUA/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-1FryUA/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-1FryUA/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (10.2 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 37 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-1FryUA/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (68.2 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12559 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, freeglut3-dev, libfreetype6-dev, libglew-dev, libglm-dev, libnetcdf-dev, libpng-dev, python3-all, python3-all-dev, python3-numpy, python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, texlive-latex-base, libxml2-dev
Filtered Build-Depends: debhelper-compat (= 13), dh-python, freeglut3-dev, libfreetype6-dev, libglew-dev, libglm-dev, libnetcdf-dev, libpng-dev, python3-all, python3-all-dev, python3-numpy, python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, texlive-latex-base, libxml2-dev
dpkg-deb: building package 'sbuild-build-depends-pymol-dummy' in '/<<BUILDDIR>>/resolver-1FryUA/apt_archive/sbuild-build-depends-pymol-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-pymol-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-1FryUA/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-1FryUA/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-1FryUA/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-1FryUA/apt_archive ./ Sources [589 B]
Get:5 copy:/<<BUILDDIR>>/resolver-1FryUA/apt_archive ./ Packages [673 B]
Fetched 2595 B in 0s (12.4 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install pymol build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cpp-11 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core fonts-lmodern freeglut3 freeglut3-dev
g++-11 gcc-11 gcc-11-base gettext gettext-base groff-base hdf5-helpers
icu-devtools intltool-debian libaec-dev libaec0 libarchive-zip-perl libasan6
libatomic1 libavahi-client3 libavahi-common-data libavahi-common3 libblas3
libbrotli-dev libbrotli1 libbsd0 libcairo2 libcc1-0 libcups2 libcurl3-gnutls
libcurl4 libcurl4-openssl-dev libdbus-1-3 libdebhelper-perl
libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-nouveau2
libdrm-radeon1 libdrm2 libedit2 libegl-dev libegl-mesa0 libegl1 libelf1
libevdev2 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libfontconfig1 libfreetype-dev libfreetype6 libfreetype6-dev libgbm1
libgcc-11-dev libgcc-s1 libgfortran5 libgl-dev libgl1 libgl1-mesa-dev
libgl1-mesa-dri libglapi-mesa libgles-dev libgles1 libgles2 libglew-dev
libglew2.2 libglib2.0-0 libglm-dev libglu1-mesa libglu1-mesa-dev
libglvnd-core-dev libglvnd-dev libglvnd0 libglx-dev libglx-mesa0 libglx0
libgomp1 libgraphite2-3 libgudev-1.0-0 libharfbuzz0b libhdf5-103-1
libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100
libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libice-dev libice6 libicu-dev
libicu67 libinput-bin libinput10 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjs-jquery libjs-sphinxdoc libjs-underscore
libkpathsea6 liblapack3 libllvm12 libmagic-mgc libmagic1 libmd0 libmd4c0
libmpdec3 libmtdev1 libnetcdf-dev libnetcdf19 libnghttp2-14 libopengl-dev
libopengl0 libpaper-utils libpaper1 libpcre2-16-0 libpipeline1 libpixman-1-0
libpng-dev libpng16-16 libpsl5 libptexenc1 libpthread-stubs0-dev
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.9
libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libqt5core5a
libqt5dbus5 libqt5designer5 libqt5gui5 libqt5help5 libqt5network5
libqt5opengl5 libqt5printsupport5 libqt5sql5 libqt5test5 libqt5widgets5
libqt5xml5 librtmp1 libsensors-config libsensors5 libsigsegv2 libsm-dev
libsm6 libssh2-1 libssl-dev libstdc++-11-dev libstdc++6 libsub-override-perl
libsynctex2 libsz2 libteckit0 libtexlua53 libtexluajit2 libtool libubsan1
libuchardet0 libvulkan1 libwacom-common libwacom2 libwayland-client0
libwayland-server0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev
libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4
libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0
libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1
libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1
libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3
libxi6 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxml2-dev libxmu6 libxpm4
libxrender1 libxshmfence1 libxt-dev libxt6 libxxf86vm1 libz3-4 libzzip-0-13
m4 man-db media-types po-debconf python3 python3-all python3-all-dev
python3-dev python3-distutils python3-lib2to3 python3-minimal python3-numpy
python3-opengl python3-pkg-resources python3-pyqt5 python3-pyqt5.qtopengl
python3-pyqt5.sip python3.9 python3.9-dev python3.9-minimal shared-mime-info
t1utils tex-common texlive-base texlive-binaries texlive-latex-base ucf
x11-common x11proto-dev xdg-utils xkb-data xorg-sgml-doctools xtrans-dev
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc gcc-11-locales dh-make flit
python3-build python3-tomli python3-installer gcc-11-doc gettext-doc
libasprintf-dev libgettextpo-dev groff cups-common libcurl4-doc libidn11-dev
libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config freetype2-doc
glew-utils libhdf5-doc libice-doc icu-doc netcdf-bin netcdf-doc libthai0
qt5-image-formats-plugins qtwayland5 lm-sensors libsm-doc libssl-doc
libstdc++-11-doc libtool-doc gfortran | fortran95-compiler gcj-jdk
libx11-doc libxcb-doc libxext-doc libxt-doc m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv gfortran
python-numpy-doc python3-pytest libgle3 python3-setuptools python3.9-venv
python3.9-doc binfmt-support ghostscript gv | postscript-viewer perl-tk xpdf
| pdf-viewer xzdec texlive-latex-base-doc
Recommended packages:
curl | wget | lynx ca-certificates dbus libarchive-cpio-perl libglib2.0-data
xdg-user-dirs javascript-common pkg-config libpng-tools publicsuffix
qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme libqt5sql5-sqlite
| libqt5sql5-mysql | libqt5sql5-odbc | libqt5sql5-psql | libqt5sql5-tds
| libqt5sql5-ibase libltdl-dev mesa-vulkan-drivers | vulkan-icd libwacom-bin
libmail-sendmail-perl lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core fonts-lmodern freeglut3 freeglut3-dev
gettext gettext-base groff-base hdf5-helpers icu-devtools intltool-debian
libaec-dev libaec0 libarchive-zip-perl libavahi-client3 libavahi-common-data
libavahi-common3 libblas3 libbrotli-dev libbrotli1 libbsd0 libcairo2
libcups2 libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdbus-1-3
libdebhelper-perl libdouble-conversion3 libdrm-amdgpu1 libdrm-common
libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-dev libegl-mesa0
libegl1 libelf1 libevdev2 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfontconfig1 libfreetype-dev libfreetype6
libfreetype6-dev libgbm1 libgfortran5 libgl-dev libgl1 libgl1-mesa-dev
libgl1-mesa-dri libglapi-mesa libgles-dev libgles1 libgles2 libglew-dev
libglew2.2 libglib2.0-0 libglm-dev libglu1-mesa libglu1-mesa-dev
libglvnd-core-dev libglvnd-dev libglvnd0 libglx-dev libglx-mesa0 libglx0
libgraphite2-3 libgudev-1.0-0 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1
libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100
libhdf5-hl-fortran-100 libice-dev libice6 libicu-dev libicu67 libinput-bin
libinput10 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery
libjs-sphinxdoc libjs-underscore libkpathsea6 liblapack3 libllvm12
libmagic-mgc libmagic1 libmd0 libmd4c0 libmpdec3 libmtdev1 libnetcdf-dev
libnetcdf19 libnghttp2-14 libopengl-dev libopengl0 libpaper-utils libpaper1
libpcre2-16-0 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libptexenc1 libpthread-stubs0-dev libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
libpython3.9-stdlib libqt5core5a libqt5dbus5 libqt5designer5 libqt5gui5
libqt5help5 libqt5network5 libqt5opengl5 libqt5printsupport5 libqt5sql5
libqt5test5 libqt5widgets5 libqt5xml5 librtmp1 libsensors-config libsensors5
libsigsegv2 libsm-dev libsm6 libssh2-1 libssl-dev libsub-override-perl
libsynctex2 libsz2 libteckit0 libtexlua53 libtexluajit2 libtool libuchardet0
libvulkan1 libwacom-common libwacom2 libwayland-client0 libwayland-server0
libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7
libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0
libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0
libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1
libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1
libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxi6
libxkbcommon-x11-0 libxkbcommon0 libxml2 libxml2-dev libxmu6 libxpm4
libxrender1 libxshmfence1 libxt-dev libxt6 libxxf86vm1 libz3-4 libzzip-0-13
m4 man-db media-types po-debconf python3 python3-all python3-all-dev
python3-dev python3-distutils python3-lib2to3 python3-minimal python3-numpy
python3-opengl python3-pkg-resources python3-pyqt5 python3-pyqt5.qtopengl
python3-pyqt5.sip python3.9 python3.9-dev python3.9-minimal
sbuild-build-depends-pymol-dummy shared-mime-info t1utils tex-common
texlive-base texlive-binaries texlive-latex-base ucf x11-common x11proto-dev
xdg-utils xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev
The following packages will be upgraded:
cpp-11 g++-11 gcc-11 gcc-11-base libasan6 libatomic1 libcc1-0 libgcc-11-dev
libgcc-s1 libgomp1 libstdc++-11-dev libstdc++6 libubsan1
13 upgraded, 248 newly installed, 0 to remove and 24 not upgraded.
Need to get 184 MB of archives.
After this operation, 241 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-1FryUA/apt_archive ./ sbuild-build-depends-pymol-dummy 0.invalid.0 [956 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-4 [135 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 11.2.0-12+rpi1 [37.9 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf gcc-11-base armhf 11.2.0-12+rpi1 [206 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 11.2.0-12+rpi1 [36.3 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 11.2.0-12+rpi1 [88.1 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 11.2.0-12+rpi1 [8184 B]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libasan6 armhf 11.2.0-12+rpi1 [1947 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 11.2.0-12+rpi1 [798 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf g++-11 armhf 11.2.0-12+rpi1 [7905 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-11-dev armhf 11.2.0-12+rpi1 [1957 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libgcc-11-dev armhf 11.2.0-12+rpi1 [698 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf gcc-11 armhf 11.2.0-12+rpi1 [14.0 MB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf cpp-11 armhf 11.2.0-12+rpi1 [7070 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 11.2.0-12+rpi1 [466 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.4-1 [31.6 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.9-1+rpi1 [795 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-3 [80.1 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.9-1+rpi1 [1582 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.9.7-1 [38.4 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf media-types all 4.0.0 [30.3 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.9-1+rpi1 [1609 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf python3.9 armhf 3.9.9-1+rpi1 [484 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.9.7-1 [21.6 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.9.7-1 [38.0 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf tex-common all 6.17 [53.6 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.1 [823 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.1-1 [26.5 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.1-1 [15.6 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.9-3 [79.5 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.9.9-3 [146 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20211217 [109 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.11.0+dfsg-1 [386 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf fonts-lmodern all 2.004.5-6.1 [4540 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libglvnd0 armhf 1.3.4-2 [54.8 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libdrm-common all 2.4.108-1+rpi1 [15.4 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libdrm2 armhf 2.4.108-1+rpi1 [40.5 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libglapi-mesa armhf 21.2.6-1+rpi1 [83.6 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libx11-xcb1 armhf 2:1.7.2-2 [203 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libxcb-dri2-0 armhf 1.14-3 [103 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libxcb-dri3-0 armhf 1.14-3 [102 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libxcb-glx0 armhf 1.14-3 [117 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libxcb-present0 armhf 1.14-3 [101 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libxcb-sync1 armhf 1.14-3 [104 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libxcb-xfixes0 armhf 1.14-3 [105 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libxfixes3 armhf 1:5.0.3-2 [20.7 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libxshmfence1 armhf 1.3-1 [8636 B]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.1 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libdrm-amdgpu1 armhf 2.4.108-1+rpi1 [27.9 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libdrm-nouveau2 armhf 2.4.108-1+rpi1 [25.5 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libdrm-radeon1 armhf 2.4.108-1+rpi1 [29.6 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libedit2 armhf 3.1-20210910-1 [81.2 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libz3-4 armhf 4.8.12-1 [5758 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libllvm12 armhf 1:12.0.1-17+rpi1 [17.2 MB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libsensors-config all 1:3.6.0-7 [32.3 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libsensors5 armhf 1:3.6.0-7 [49.6 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libvulkan1 armhf 1.2.189.0-2 [84.3 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libgl1-mesa-dri armhf 21.2.6-1+rpi1 [6394 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libglx-mesa0 armhf 21.2.6-1+rpi1 [169 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libglx0 armhf 1.3.4-2 [26.6 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libgl1 armhf 1.3.4-2 [105 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libxi6 armhf 2:1.8-1 [78.1 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf freeglut3 armhf 2.8.1-6 [112 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf x11proto-dev all 2021.5-1 [599 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libxau-dev armhf 1:1.0.9-1 [22.3 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf xtrans-dev all 1.4.0-1 [98.7 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libxcb1-dev armhf 1.14-3 [171 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libx11-dev armhf 2:1.7.2-2 [780 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libglx-dev armhf 1.3.4-2 [16.6 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libgl-dev armhf 1.3.4-2 [100 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libglvnd-core-dev armhf 1.3.4-2 [14.1 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libwayland-server0 armhf 1.19.0-2+b1 [28.3 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libgbm1 armhf 21.2.6-1+rpi1 [73.6 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libwayland-client0 armhf 1.19.0-2+b1 [22.4 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libegl-mesa0 armhf 21.2.6-1+rpi1 [125 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libegl1 armhf 1.3.4-2 [29.8 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libegl-dev armhf 1.3.4-2 [20.1 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libgles1 armhf 1.3.4-2 [13.4 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libgles2 armhf 1.3.4-2 [20.3 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libgles-dev armhf 1.3.4-2 [50.6 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libopengl0 armhf 1.3.4-2 [38.9 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libopengl-dev armhf 1.3.4-2 [6156 B]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libglvnd-dev armhf 1.3.4-2 [5916 B]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libgl1-mesa-dev armhf 21.2.6-1+rpi1 [54.2 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libglu1-mesa armhf 9.0.1-1 [127 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libglu1-mesa-dev armhf 9.0.1-1 [166 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libxext-dev armhf 2:1.3.4-1 [102 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.0-1 [159 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libice-dev armhf 2:1.0.10-1 [58.7 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libsm-dev armhf 2:1.2.3-1 [35.4 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libxt-dev armhf 1:1.2.0-1 [372 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf freeglut3-dev armhf 2.8.1-6 [165 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf hdf5-helpers armhf 1.10.7+repack-4+rpi1 [42.9 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 67.1-7 [172 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libaec0 armhf 1.0.6-1 [19.3 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf libsz2 armhf 1.0.6-1 [7452 B]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libaec-dev armhf 1.0.6-1 [17.6 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libavahi-common-data armhf 0.8-5 [123 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf libavahi-common3 armhf 0.8-5 [55.3 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libdbus-1-3 armhf 1.12.20-3 [195 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf libavahi-client3 armhf 0.8-5 [57.9 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.0-1 [108 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf libbrotli-dev armhf 1.0.9-2+b1 [272 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.14-3 [110 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-5 [602 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libcups2 armhf 2.3.3op2-7+b1 [311 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.79.1-2 [317 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.79.1-2 [320 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libcurl4-openssl-dev armhf 7.79.1-2 [396 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf libdouble-conversion3 armhf 3.1.5-7 [38.1 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf libevdev2 armhf 1.12.0+dfsg-1 [27.8 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.1-3 [135 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.37-3 [277 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf libfreetype-dev armhf 2.11.0+dfsg-1 [544 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6-dev armhf 2.11.0+dfsg-1 [109 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-12+rpi1 [235 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf libglew2.2 armhf 2.2.0-4 [158 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf libglew-dev armhf 2.2.0-4 [251 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.70.2-1 [1210 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf libglm-dev all 0.9.9.8+ds-2 [183 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf libgudev-1.0-0 armhf 237-2 [13.2 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-103-1 armhf 1.10.7+repack-4+rpi1 [1246 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.7+repack-4+rpi1 [133 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-fortran-102 armhf 1.10.7+repack-4+rpi1 [97.0 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-100 armhf 1.10.7+repack-4+rpi1 [82.1 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.7+repack-4+rpi1 [53.9 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.7+repack-4+rpi1 [40.1 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.2-1 [261 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.2-1 [74.7 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf libssl-dev armhf 1.1.1l-1 [1581 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-dev armhf 1.10.7+repack-4+rpi1 [2211 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 67.1-7 [9228 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf libwacom-common all 1.12-1 [52.9 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf libwacom2 armhf 1.12-1 [19.5 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf libinput-bin armhf 1.19.2-1 [24.4 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf libmtdev1 armhf 1.1.6-1 [22.0 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf libinput10 armhf 1.19.2-1 [106 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-8 [315 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.9.1~dfsg-4 [100 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.3.1-2 [139 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf libkpathsea6 armhf 2021.20210626.59705-1 [164 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.0-1 [1594 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf libmd4c0 armhf 0.4.8-1 [39.4 kB]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf libnetcdf19 armhf 1:4.8.1-1 [397 kB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf libnetcdf-dev armhf 1:4.8.1-1 [99.5 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:205 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:206 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.39-3 [200 kB]
Get:207 http://172.17.4.1/private bookworm-staging/main armhf libptexenc1 armhf 2021.20210626.59705-1 [61.5 kB]
Get:208 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.9-1+rpi1 [1411 kB]
Get:209 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-dev armhf 3.9.9-1+rpi1 [2996 kB]
Get:210 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.9.7-1 [21.8 kB]
Get:211 http://172.17.4.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.9.7-1 [1068 B]
Get:212 http://172.17.4.1/private bookworm-staging/main armhf shared-mime-info armhf 2.0-1 [697 kB]
Get:213 http://172.17.4.1/private bookworm-staging/main armhf libqt5core5a armhf 5.15.2+dfsg-13+rpi1 [1526 kB]
Get:214 http://172.17.4.1/private bookworm-staging/main armhf libqt5dbus5 armhf 5.15.2+dfsg-13+rpi1 [212 kB]
Get:215 http://172.17.4.1/private bookworm-staging/main armhf libqt5network5 armhf 5.15.2+dfsg-13+rpi1 [597 kB]
Get:216 http://172.17.4.1/private bookworm-staging/main armhf libxcb-icccm4 armhf 0.4.1-1.1 [26.3 kB]
Get:217 http://172.17.4.1/private bookworm-staging/main armhf libxcb-util1 armhf 0.4.0-1 [22.1 kB]
Get:218 http://172.17.4.1/private bookworm-staging/main armhf libxcb-image0 armhf 0.4.0-1+b3 [23.4 kB]
Get:219 http://172.17.4.1/private bookworm-staging/main armhf libxcb-keysyms1 armhf 0.4.0-1+b2 [15.9 kB]
Get:220 http://172.17.4.1/private bookworm-staging/main armhf libxcb-randr0 armhf 1.14-3 [112 kB]
Get:221 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render-util0 armhf 0.3.9-1+b1 [17.3 kB]
Get:222 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shape0 armhf 1.14-3 [102 kB]
Get:223 http://172.17.4.1/private bookworm-staging/main armhf libxcb-xinerama0 armhf 1.14-3 [101 kB]
Get:224 http://172.17.4.1/private bookworm-staging/main armhf libxcb-xinput0 armhf 1.14-3 [123 kB]
Get:225 http://172.17.4.1/private bookworm-staging/main armhf libxcb-xkb1 armhf 1.14-3 [122 kB]
Get:226 http://172.17.4.1/private bookworm-staging/main armhf xkb-data all 2.33-1 [748 kB]
Get:227 http://172.17.4.1/private bookworm-staging/main armhf libxkbcommon0 armhf 1.3.1-1 [95.7 kB]
Get:228 http://172.17.4.1/private bookworm-staging/main armhf libxkbcommon-x11-0 armhf 1.3.1-1 [15.7 kB]
Get:229 http://172.17.4.1/private bookworm-staging/main armhf libqt5gui5 armhf 5.15.2+dfsg-13+rpi1 [2556 kB]
Get:230 http://172.17.4.1/private bookworm-staging/main armhf libqt5widgets5 armhf 5.15.2+dfsg-13+rpi1 [2060 kB]
Get:231 http://172.17.4.1/private bookworm-staging/main armhf libqt5xml5 armhf 5.15.2+dfsg-13+rpi1 [137 kB]
Get:232 http://172.17.4.1/private bookworm-staging/main armhf libqt5designer5 armhf 5.15.2-5 [2617 kB]
Get:233 http://172.17.4.1/private bookworm-staging/main armhf libqt5sql5 armhf 5.15.2+dfsg-13+rpi1 [135 kB]
Get:234 http://172.17.4.1/private bookworm-staging/main armhf libqt5help5 armhf 5.15.2-5 [132 kB]
Get:235 http://172.17.4.1/private bookworm-staging/main armhf libqt5opengl5 armhf 5.15.2+dfsg-13+rpi1 [154 kB]
Get:236 http://172.17.4.1/private bookworm-staging/main armhf libqt5printsupport5 armhf 5.15.2+dfsg-13+rpi1 [211 kB]
Get:237 http://172.17.4.1/private bookworm-staging/main armhf libqt5test5 armhf 5.15.2+dfsg-13+rpi1 [157 kB]
Get:238 http://172.17.4.1/private bookworm-staging/main armhf libsynctex2 armhf 2021.20210626.59705-1 [67.4 kB]
Get:239 http://172.17.4.1/private bookworm-staging/main armhf libteckit0 armhf 2.5.11+ds1-1 [256 kB]
Get:240 http://172.17.4.1/private bookworm-staging/main armhf libtexlua53 armhf 2021.20210626.59705-1 [102 kB]
Get:241 http://172.17.4.1/private bookworm-staging/main armhf libtexluajit2 armhf 2021.20210626.59705-1 [208 kB]
Get:242 http://172.17.4.1/private bookworm-staging/main armhf libxmu6 armhf 2:1.1.2-2+b3 [52.1 kB]
Get:243 http://172.17.4.1/private bookworm-staging/main armhf libxpm4 armhf 1:3.5.12-1 [43.6 kB]
Get:244 http://172.17.4.1/private bookworm-staging/main armhf libxaw7 armhf 2:1.0.13-1.1 [166 kB]
Get:245 http://172.17.4.1/private bookworm-staging/main armhf libxml2-dev armhf 2.9.12+dfsg-5 [648 kB]
Get:246 http://172.17.4.1/private bookworm-staging/main armhf libzzip-0-13 armhf 0.13.72+dfsg.1-1.1 [54.3 kB]
Get:247 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.9.7-1 [1052 B]
Get:248 http://172.17.4.1/private bookworm-staging/main armhf python3.9-dev armhf 3.9.9-1+rpi1 [501 kB]
Get:249 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.9.7-1 [25.3 kB]
Get:250 http://172.17.4.1/private bookworm-staging/main armhf python3-all-dev armhf 3.9.7-1 [1064 B]
Get:251 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 58.2.0-1 [192 kB]
Get:252 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.21.4-2 [3438 kB]
Get:253 http://172.17.4.1/private bookworm-staging/main armhf python3-opengl all 3.1.5+dfsg-1 [610 kB]
Get:254 http://172.17.4.1/private bookworm-staging/main armhf python3-pyqt5.sip armhf 12.9.0-3 [44.0 kB]
Get:255 http://172.17.4.1/private bookworm-staging/main armhf python3-pyqt5 armhf 5.15.6+dfsg-1 [1959 kB]
Get:256 http://172.17.4.1/private bookworm-staging/main armhf python3-pyqt5.qtopengl armhf 5.15.6+dfsg-1 [139 kB]
Get:257 http://172.17.4.1/private bookworm-staging/main armhf t1utils armhf 1.41-4 [52.3 kB]
Get:258 http://172.17.4.1/private bookworm-staging/main armhf texlive-binaries armhf 2021.20210626.59705-1 [6847 kB]
Get:259 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:260 http://172.17.4.1/private bookworm-staging/main armhf texlive-base all 2021.20211217-1 [21.1 MB]
Get:261 http://172.17.4.1/private bookworm-staging/main armhf texlive-latex-base all 2021.20211217-1 [1159 kB]
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invoke-rc.d: could not determine current runlevel
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update-language: texlive-base not installed and configured, doing nothing!
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Setting up shared-mime-info (2.0-1) ...
Setting up libxkbcommon-x11-0:armhf (1.3.1-1) ...
Setting up libqt5core5a:armhf (5.15.2+dfsg-13+rpi1) ...
Setting up libjs-sphinxdoc (4.3.1-2) ...
Setting up autoconf (2.71-2) ...
Setting up libstdc++-11-dev:armhf (11.2.0-12+rpi1) ...
Setting up libxcb-dri2-0:armhf (1.14-3) ...
Setting up dh-strip-nondeterminism (1.12.1-1) ...
Setting up libdrm2:armhf (2.4.108-1+rpi1) ...
Setting up dwz (0.14-1) ...
Setting up gcc-11 (11.2.0-12+rpi1) ...
Setting up groff-base (1.22.4-7) ...
Setting up libqt5dbus5:armhf (5.15.2+dfsg-13+rpi1) ...
Setting up libxcb-randr0:armhf (1.14-3) ...
Setting up libcurl4:armhf (7.79.1-2) ...
Setting up libx11-6:armhf (2:1.7.2-2) ...
Setting up libharfbuzz0b:armhf (2.7.4-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up libqt5test5:armhf (5.15.2+dfsg-13+rpi1) ...
Setting up libwacom2:armhf (1.12-1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libavahi-client3:armhf (0.8-5) ...
Setting up python3.9 (3.9.9-1+rpi1) ...
Setting up libdrm-amdgpu1:armhf (2.4.108-1+rpi1) ...
Setting up automake (1:1.16.5-1.1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libxcb-dri3-0:armhf (1.14-3) ...
Setting up libx11-xcb1:armhf (2:1.7.2-2) ...
Setting up fontconfig (2.13.1-4.2) ...
Regenerating fonts cache... done.
Setting up libdrm-nouveau2:armhf (2.4.108-1+rpi1) ...
Setting up libxcb1-dev:armhf (1.14-3) ...
Setting up libxpm4:armhf (1:3.5.12-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libgbm1:armhf (21.2.6-1+rpi1) ...
Setting up g++-11 (11.2.0-12+rpi1) ...
Setting up libsm-dev:armhf (2:1.2.3-1) ...
Setting up libdrm-radeon1:armhf (2.4.108-1+rpi1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libgl1-mesa-dri:armhf (21.2.6-1+rpi1) ...
Setting up libx11-dev:armhf (2:1.7.2-2) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libpython3.9-dev:armhf (3.9.9-1+rpi1) ...
Setting up python3 (3.9.7-1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libcairo2:armhf (1.16.0-5) ...
Setting up libqt5network5:armhf (5.15.2+dfsg-13+rpi1) ...
Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ...
Setting up libinput-bin (1.19.2-1) ...
Setting up libfreetype-dev:armhf (2.11.0+dfsg-1) ...
Setting up libqt5sql5:armhf (5.15.2+dfsg-13+rpi1) ...
Setting up dh-autoreconf (20) ...
Setting up libqt5xml5:armhf (5.15.2+dfsg-13+rpi1) ...
Setting up libegl-mesa0:armhf (21.2.6-1+rpi1) ...
Setting up libxfixes3:armhf (1:5.0.3-2) ...
Setting up libcurl4-openssl-dev:armhf (7.79.1-2) ...
Setting up libxt6:armhf (1:1.2.0-1) ...
Setting up libxext-dev:armhf (2:1.3.4-1) ...
Setting up libcups2:armhf (2.3.3op2-7+b1) ...
Setting up python3-pyqt5.sip (12.9.0-3) ...
Setting up libhdf5-103-1:armhf (1.10.7+repack-4+rpi1) ...
Setting up python3.9-dev (3.9.9-1+rpi1) ...
Setting up libhdf5-cpp-103-1:armhf (1.10.7+repack-4+rpi1) ...
Setting up libegl1:armhf (1.3.4-2) ...
Setting up python3-lib2to3 (3.9.9-3) ...
Setting up libhdf5-hl-100:armhf (1.10.7+repack-4+rpi1) ...
Setting up python3-pkg-resources (58.2.0-1) ...
Setting up python3-distutils (3.9.9-3) ...
Setting up dh-python (5.20211217) ...
Setting up libinput10:armhf (1.19.2-1) ...
Setting up libxmu6:armhf (2:1.1.2-2+b3) ...
Setting up libglx-mesa0:armhf (21.2.6-1+rpi1) ...
Setting up libpython3-dev:armhf (3.9.7-1) ...
Setting up libxi6:armhf (2:1.8-1) ...
Setting up libglx0:armhf (1.3.4-2) ...
Setting up libqt5gui5:armhf (5.15.2+dfsg-13+rpi1) ...
Setting up python3-all (3.9.7-1) ...
Setting up debhelper (13.5.2) ...
Setting up libqt5widgets5:armhf (5.15.2+dfsg-13+rpi1) ...
Setting up libxaw7:armhf (2:1.0.13-1.1) ...
Setting up libqt5help5:armhf (5.15.2-5) ...
Setting up libfreetype6-dev:armhf (2.11.0+dfsg-1) ...
Setting up libqt5printsupport5:armhf (5.15.2+dfsg-13+rpi1) ...
Setting up libhdf5-hl-cpp-100:armhf (1.10.7+repack-4+rpi1) ...
Setting up libgl1:armhf (1.3.4-2) ...
Setting up libxt-dev:armhf (1:1.2.0-1) ...
Setting up libpython3-all-dev:armhf (3.9.7-1) ...
Setting up python3-dev (3.9.7-1) ...
Setting up libhdf5-fortran-102:armhf (1.10.7+repack-4+rpi1) ...
Setting up python3-numpy (1:1.21.4-2) ...
Setting up libglew2.2:armhf (2.2.0-4) ...
Setting up libnetcdf19:armhf (1:4.8.1-1) ...
Setting up libqt5opengl5:armhf (5.15.2+dfsg-13+rpi1) ...
Setting up texlive-binaries (2021.20210626.59705-1) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up libhdf5-hl-fortran-100:armhf (1.10.7+repack-4+rpi1) ...
Setting up libglx-dev:armhf (1.3.4-2) ...
Setting up libglu1-mesa:armhf (9.0.1-1) ...
Setting up texlive-base (2021.20211217-1) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
Setting up libgl-dev:armhf (1.3.4-2) ...
Setting up python3-all-dev (3.9.7-1) ...
Setting up freeglut3:armhf (2.8.1-6) ...
Setting up libqt5designer5:armhf (5.15.2-5) ...
Setting up libegl-dev:armhf (1.3.4-2) ...
Setting up python3-opengl (3.1.5+dfsg-1) ...
Setting up texlive-latex-base (2021.20211217-1) ...
Setting up libhdf5-dev (1.10.7+repack-4+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libglu1-mesa-dev:armhf (9.0.1-1) ...
Setting up libnetcdf-dev (1:4.8.1-1) ...
Setting up libgles-dev:armhf (1.3.4-2) ...
Setting up python3-pyqt5 (5.15.6+dfsg-1) ...
Setting up python3-pyqt5.qtopengl (5.15.6+dfsg-1) ...
Setting up libglvnd-dev:armhf (1.3.4-2) ...
Setting up libglew-dev:armhf (2.2.0-4) ...
Setting up libgl1-mesa-dev:armhf (21.2.6-1+rpi1) ...
Setting up freeglut3-dev:armhf (2.8.1-6) ...
Setting up sbuild-build-depends-pymol-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
Processing triggers for tex-common (6.17) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
This may take some time... done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-163-generic armhf (armv8l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-11_11.2.0-12+rpi1 gcc-11_11.2.0-12+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-11-dev_11.2.0-12+rpi1 libstdc++6_11.2.0-12+rpi1 linux-libc-dev_5.14.16-1+rpi1
Package versions: adduser_3.118 apt_2.3.12 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-3.1 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-4 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-12+rpi1 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-python_5.20211217 dh-strip-nondeterminism_1.12.1-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.41-2 findutils_4.8.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 fonts-lmodern_2.004.5-6.1 freeglut3_2.8.1-6 freeglut3-dev_2.8.1-6 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-12+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-12+rpi1 gcc-11-base_11.2.0-12+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hdf5-helpers_1.10.7+repack-4+rpi1 hostname_3.23 icu-devtools_67.1-7 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libaec-dev_1.0.6-1 libaec0_1.0.6-1 libapt-pkg6.0_2.3.12 libarchive-zip-perl_1.68-1 libasan6_11.2.0-12+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-12+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libavahi-client3_0.8-5 libavahi-common-data_0.8-5 libavahi-common3_0.8-5 libbinutils_2.37-5+rpi1 libblas3_3.10.0-1 libblkid1_2.37.2-4 libbrotli-dev_1.0.9-2+b1 libbrotli1_1.0.9-2+b1 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcairo2_1.16.0-5 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-12+rpi1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.26-1 libcrypt1_1:4.4.26-1 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libcups2_2.3.3op2-7+b1 libcurl3-gnutls_7.79.1-2 libcurl4_7.79.1-2 libcurl4-openssl-dev_7.79.1-2 libdb5.3_5.3.28+dfsg1-0.8 libdbus-1-3_1.12.20-3 libdebconfclient0_0.261 libdebhelper-perl_13.5.2 libdouble-conversion3_3.1.5-7 libdpkg-perl_1.20.9+rpi1 libdrm-amdgpu1_2.4.108-1+rpi1 libdrm-common_2.4.108-1+rpi1 libdrm-nouveau2_2.4.108-1+rpi1 libdrm-radeon1_2.4.108-1+rpi1 libdrm2_2.4.108-1+rpi1 libedit2_3.1-20210910-1 libegl-dev_1.3.4-2 libegl-mesa0_21.2.6-1+rpi1 libegl1_1.3.4-2 libelf1_0.186-1 libevdev2_1.12.0+dfsg-1 libexpat1_2.4.1-3 libexpat1-dev_2.4.1-3 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi8_3.4.2-3 libfile-stripnondeterminism-perl_1.12.1-1 libfontconfig1_2.13.1-4.2 libfreetype-dev_2.11.0+dfsg-1 libfreetype6_2.11.0+dfsg-1 libfreetype6-dev_2.11.0+dfsg-1 libgbm1_21.2.6-1+rpi1 libgcc-11-dev_11.2.0-12+rpi1 libgcc-s1_11.2.0-12+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgfortran5_11.2.0-12+rpi1 libgl-dev_1.3.4-2 libgl1_1.3.4-2 libgl1-mesa-dev_21.2.6-1+rpi1 libgl1-mesa-dri_21.2.6-1+rpi1 libglapi-mesa_21.2.6-1+rpi1 libgles-dev_1.3.4-2 libgles1_1.3.4-2 libgles2_1.3.4-2 libglew-dev_2.2.0-4 libglew2.2_2.2.0-4 libglib2.0-0_2.70.2-1 libglm-dev_0.9.9.8+ds-2 libglu1-mesa_9.0.1-1 libglu1-mesa-dev_9.0.1-1 libglvnd-core-dev_1.3.4-2 libglvnd-dev_1.3.4-2 libglvnd0_1.3.4-2 libglx-dev_1.3.4-2 libglx-mesa0_21.2.6-1+rpi1 libglx0_1.3.4-2 libgmp10_2:6.2.1+dfsg-3 libgnutls30_3.7.2-2 libgomp1_11.2.0-12+rpi1 libgpg-error0_1.42-3 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.18.3-7 libgudev-1.0-0_237-2 libharfbuzz0b_2.7.4-1 libhdf5-103-1_1.10.7+repack-4+rpi1 libhdf5-cpp-103-1_1.10.7+repack-4+rpi1 libhdf5-dev_1.10.7+repack-4+rpi1 libhdf5-fortran-102_1.10.7+repack-4+rpi1 libhdf5-hl-100_1.10.7+repack-4+rpi1 libhdf5-hl-cpp-100_1.10.7+repack-4+rpi1 libhdf5-hl-fortran-100_1.10.7+repack-4+rpi1 libhogweed6_3.7.3-1 libice-dev_2:1.0.10-1 libice6_2:1.0.10-1 libicu-dev_67.1-7 libicu67_67.1-7 libidn2-0_2.3.2-2 libinput-bin_1.19.2-1 libinput10_1.19.2-1 libisl23_0.24-2 libjpeg-dev_1:2.1.2-1 libjpeg62-turbo_1:2.1.2-1 libjpeg62-turbo-dev_1:2.1.2-1 libjs-jquery_3.5.1+dfsg+~3.5.5-8 libjs-sphinxdoc_4.3.1-2 libjs-underscore_1.9.1~dfsg-4 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkpathsea6_2021.20210626.59705-1 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 liblapack3_3.10.0-1 libldap-2.4-2_2.4.59+dfsg-1 libllvm12_1:12.0.1-17+rpi1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmd0_1.0.4-1 libmd4c0_0.4.8-1 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libmtdev1_1.1.6-1 libncursesw6_6.3-1 libnetcdf-dev_1:4.8.1-1 libnetcdf19_1:4.8.1-1 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libopengl-dev_1.3.4-2 libopengl0_1.3.4-2 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpaper-utils_1.1.28 libpaper1_1.1.28 libpcre2-16-0_10.39-3 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.4-1 libpixman-1-0_0.40.0-1 libpng-dev_1.6.37-3 libpng16-16_1.6.37-3 libpsl5_0.21.0-1.2 libptexenc1_2021.20210626.59705-1 libpthread-stubs0-dev_0.4-1 libpython3-all-dev_3.9.7-1 libpython3-dev_3.9.7-1 libpython3-stdlib_3.9.7-1 libpython3.9_3.9.9-1+rpi1 libpython3.9-dev_3.9.9-1+rpi1 libpython3.9-minimal_3.9.9-1+rpi1 libpython3.9-stdlib_3.9.9-1+rpi1 libqt5core5a_5.15.2+dfsg-13+rpi1 libqt5dbus5_5.15.2+dfsg-13+rpi1 libqt5designer5_5.15.2-5 libqt5gui5_5.15.2+dfsg-13+rpi1 libqt5help5_5.15.2-5 libqt5network5_5.15.2+dfsg-13+rpi1 libqt5opengl5_5.15.2+dfsg-13+rpi1 libqt5printsupport5_5.15.2+dfsg-13+rpi1 libqt5sql5_5.15.2+dfsg-13+rpi1 libqt5test5_5.15.2+dfsg-13+rpi1 libqt5widgets5_5.15.2+dfsg-13+rpi1 libqt5xml5_5.15.2+dfsg-13+rpi1 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg2-2 libsasl2-modules-db_2.1.27+dfsg2-2 libseccomp2_2.5.3-2+rpi1 libselinux1_3.3-1 libsemanage-common_3.3-1 libsemanage2_3.3-1 libsensors-config_1:3.6.0-7 libsensors5_1:3.6.0-7 libsepol1_3.1-1 libsepol2_3.3-1 libsigsegv2_2.13-1 libsm-dev_2:1.2.3-1 libsm6_2:1.2.3-1 libsmartcols1_2.37.2-4 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssh2-1_1.10.0-2 libssl-dev_1.1.1l-1 libssl1.1_1.1.1l-1 libstdc++-11-dev_11.2.0-12+rpi1 libstdc++6_11.2.0-12+rpi1 libsub-override-perl_0.09-2 libsynctex2_2021.20210626.59705-1 libsystemd0_249.7-1+rpi1 libsz2_1.0.6-1 libtasn1-6_4.18.0-4 libteckit0_2.5.11+ds1-1 libtexlua53_2021.20210626.59705-1 libtexluajit2_2021.20210626.59705-1 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.3-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-12+rpi1 libuchardet0_0.0.7-1 libudev1_249.7-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-4 libvulkan1_1.2.189.0-2 libwacom-common_1.12-1 libwacom2_1.12-1 libwayland-client0_1.19.0-2+b1 libwayland-server0_1.19.0-2+b1 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libx11-dev_2:1.7.2-2 libx11-xcb1_2:1.7.2-2 libxau-dev_1:1.0.9-1 libxau6_1:1.0.9-1 libxaw7_2:1.0.13-1.1 libxcb-dri2-0_1.14-3 libxcb-dri3-0_1.14-3 libxcb-glx0_1.14-3 libxcb-icccm4_0.4.1-1.1 libxcb-image0_0.4.0-1+b3 libxcb-keysyms1_0.4.0-1+b2 libxcb-present0_1.14-3 libxcb-randr0_1.14-3 libxcb-render-util0_0.3.9-1+b1 libxcb-render0_1.14-3 libxcb-shape0_1.14-3 libxcb-shm0_1.14-3 libxcb-sync1_1.14-3 libxcb-util1_0.4.0-1 libxcb-xfixes0_1.14-3 libxcb-xinerama0_1.14-3 libxcb-xinput0_1.14-3 libxcb-xkb1_1.14-3 libxcb1_1.14-3 libxcb1-dev_1.14-3 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.4-1 libxext6_2:1.3.4-1 libxfixes3_1:5.0.3-2 libxi6_2:1.8-1 libxkbcommon-x11-0_1.3.1-1 libxkbcommon0_1.3.1-1 libxml2_2.9.12+dfsg-5 libxml2-dev_2.9.12+dfsg-5 libxmu6_2:1.1.2-2+b3 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxshmfence1_1.3-1 libxt-dev_1:1.2.0-1 libxt6_1:1.2.0-1 libxxf86vm1_1:1.1.4-1+b2 libxxhash0_0.8.0-2+rpi1 libz3-4_4.8.12-1 libzstd1_1.4.8+dfsg-3+rpi1 libzzip-0-13_0.13.72+dfsg.1-1.1 linux-libc-dev_5.14.16-1+rpi1 login_1:4.8.1-2 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 mount_2.37.2-4 ncurses-base_6.3-1 ncurses-bin_6.3-1 netbase_6.3 passwd_1:4.8.1-2 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python3_3.9.7-1 python3-all_3.9.7-1 python3-all-dev_3.9.7-1 python3-dev_3.9.7-1 python3-distutils_3.9.9-3 python3-lib2to3_3.9.9-3 python3-minimal_3.9.7-1 python3-numpy_1:1.21.4-2 python3-opengl_3.1.5+dfsg-1 python3-pkg-resources_58.2.0-1 python3-pyqt5_5.15.6+dfsg-1 python3-pyqt5.qtopengl_5.15.6+dfsg-1 python3-pyqt5.sip_12.9.0-3 python3.9_3.9.9-1+rpi1 python3.9-dev_3.9.9-1+rpi1 python3.9-minimal_3.9.9-1+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pymol-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 shared-mime-info_2.0-1 sysvinit-utils_3.00-1 t1utils_1.41-4 tar_1.34+dfsg-1 tex-common_6.17 texlive-base_2021.20211217-1 texlive-binaries_2021.20210626.59705-1 texlive-latex-base_2021.20211217-1 tzdata_2021e-1 ucf_3.0043 util-linux_2.37.2-4 x11-common_1:7.7+23 x11proto-dev_2021.5-1 xdg-utils_1.1.3-4.1 xkb-data_2.33-1 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.7k3kxovA/trustedkeys.kbx': General error
gpgv: Signature made Wed Dec 15 16:13:49 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./pymol_2.5.0+dfsg-1.dsc
dpkg-source: info: extracting pymol in /<<BUILDDIR>>/pymol-2.5.0+dfsg
dpkg-source: info: unpacking pymol_2.5.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking pymol_2.5.0+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 03_povray.patch
dpkg-source: info: applying 22_fix_pymol_import.patch
dpkg-source: info: applying 27_fix_pymol_path_in_setup.patch
dpkg-source: info: applying 28_no_data_install_in_python_path.patch
dpkg-source: info: applying 31_fix_format-security.patch
dpkg-source: info: applying 32_fix_spelling_lintian_warnings.patch
dpkg-source: info: applying 33_fix_relative_paths_in_example_scripts.patch
dpkg-source: info: applying 34_fix_examples_add_fetch_instead_of_load.patch
dpkg-source: info: applying 40_mstop_movies.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-831a7dbc-e015-4b0b-9c4f-5d2fdb779d1f
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package pymol
dpkg-buildpackage: info: source version 2.5.0+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:237: python3.9 setup.py clean
running clean
removing '/<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
debian/rules override_dh_clean
make[1]: Entering directory '/<<BUILDDIR>>/pymol-2.5.0+dfsg'
rm -f -r build test/tmp test/cmp generated
dh_clean debian/pymol-ref-card.* \
Rules.make create_shadertext.pyc
make[1]: Leaving directory '/<<BUILDDIR>>/pymol-2.5.0+dfsg'
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:237: python3.9 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:237: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/arc.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/bond_amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/bond_mmff.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/bonds.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/brick.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/cc1.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/charge.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/cif.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/cpv.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/dictdb.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/gamess1.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/gms.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/hetatm.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/io.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/lst.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/mae.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/map.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/mass.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/mmd.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/models.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/mol.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/mol2.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/neighbor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/pdb.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/pkl.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/place.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/protein.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/protein_amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/protein_amber99.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/protein_mmff.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/protein_residues.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/sdf.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/solvate.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/water_amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/water_residues.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/xyz.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
copying modules/chempy/bmin/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
copying modules/chempy/bmin/commands.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
copying modules/chempy/bmin/realtime.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
copying modules/chempy/bmin/state.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
copying modules/chempy/bmin/util.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ
copying modules/chempy/champ/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ
copying modules/chempy/champ/amber99.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ
copying modules/chempy/champ/assign.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ
copying modules/chempy/champ/formal_charges.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fast
copying modules/chempy/fast/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fast
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fragments
copying modules/chempy/fragments/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fragments
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf
copying modules/chempy/mmtf/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf
copying modules/chempy/mmtf/io.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
copying modules/chempy/tinker/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
copying modules/chempy/tinker/amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
copying modules/chempy/tinker/keyword.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
copying modules/chempy/tinker/realtime.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
copying modules/chempy/tinker/state.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/TextEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/advanced_settings_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/builder.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/file_dialogs.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/keymapping.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/mimic_pmg_tk.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/mimic_tk.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/properties_dialog.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/pymol_gl_widget.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/pymol_qt_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/shortcut_menu_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/volume.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax
copying modules/pmg_qt/syntax/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax
copying modules/pmg_qt/syntax/pml.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax
copying modules/pmg_qt/syntax/pmlparser.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax
copying modules/pmg_qt/syntax/python.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/ColorEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/Demo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/PMGApp.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/PyMOLMapLoad.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/SetEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/Setting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/TextEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/volume.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins
copying modules/pmg_tk/skins/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/demo
copying modules/pmg_tk/skins/demo/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/demo
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/ModalWindow.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/builder.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup
copying modules/pmg_tk/startup/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/__main__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/api.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/callback.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/cgo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/checking.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/cmd.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/colorprinting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/colorramping.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/commanding.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/completing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/computing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/constants.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/constants_palette.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/controlling.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/creating.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/diagnosing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/editing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/editor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/experimenting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/exporting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/externing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/feedingback.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/fitting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/headering.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/helping.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/importing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/internal.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/invocation.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/keyboard.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/keywords.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/lazyio.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/locking.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/menu.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/monitoring.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/morphing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/movie.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/moving.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/mpeg_encode.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/parser.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/parsing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/preset.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/pymolhttpd.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/querying.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/rpc.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/save_shortcut.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/selecting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/selector.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/seqalign.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/setting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/shortcut.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/shortcut_dict.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/shortcut_manager.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/util.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/vfont.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/viewing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/wizarding.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/xray.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/xwin.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/povray.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt
copying modules/pymol/Qt/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt
copying modules/pymol/Qt/utils.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/installation.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/legacysupport.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/managergui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/managergui_qt.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/repository.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/stereochemistry
copying modules/pymol/stereochemistry/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/stereochemistry
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/annotation.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/appearance.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/benchmark.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/box.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/charge.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/cleanup.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/command.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/demo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/density.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/distance.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/dragging.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/filter.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/label.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/measurement.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/message.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/mutagenesis.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/nucmutagenesis.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/openvr.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/pair_fit.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/pseudoatom.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/renaming.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/sculpting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/security.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/stereodemo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/toggle.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2
copying modules/pymol2/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2
copying modules/pymol2/cmd2.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2
copying modules/pmg_qt/forms/askpartial.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/change_confirm.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/colors.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/create_shortcut.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/fetch.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/help_shortcut.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_aln.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_mae.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_map.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_mtz.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_traj.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/movieexport.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/pluginitem.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/pluginmanager.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/png.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/props.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/render.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/save_molecule.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/save_object.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/shortcut_menu.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
running build_ext
building 'pymol._cmd' extension
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/build
creating build/temp.linux-armhf-3.9/build/generated
creating build/temp.linux-armhf-3.9/contrib
creating build/temp.linux-armhf-3.9/contrib/uiuc
creating build/temp.linux-armhf-3.9/contrib/uiuc/plugins
creating build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin
creating build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src
creating build/temp.linux-armhf-3.9/layer0
creating build/temp.linux-armhf-3.9/layer1
creating build/temp.linux-armhf-3.9/layer2
creating build/temp.linux-armhf-3.9/layer3
creating build/temp.linux-armhf-3.9/layer4
creating build/temp.linux-armhf-3.9/layer5
creating build/temp.linux-armhf-3.9/ov
creating build/temp.linux-armhf-3.9/ov/src
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD build/generated/ShaderText.cpp -o build/temp.linux-armhf-3.9/build/generated/ShaderText.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerInitAll':
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:271:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
271 | if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:273:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
273 | if(ok) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerFreeAll':
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:411:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
411 | if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:413:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
413 | return ok;
| ^~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function 'write_psf_structure':
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:782:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
782 | if (strlen(atoms[i].type) > fw) {
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: 'fortread_4' defined but not used [-Wunused-function]
103 | static int fortread_4(void *dest, int n, int swap, FILE *fd) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: 'fort_get_endian_reclen' defined but not used [-Wunused-function]
55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: 'fort_eat_recmark' defined but not used [-Wunused-function]
36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28,
from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'swap8_aligned' defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'swap2_aligned' defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'swap8_unaligned' defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'swap4_unaligned' defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function 'void* open_grid_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
84 | fread(&dataBegin, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_timestep(void*, int, molfile_timestep_t*)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
275 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
289 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_bonds_aux(void*, int*, int**, int**, float**)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
199 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
209 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
127 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
138 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'void* open_mol2_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
74 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
81 | fgets(line, LINESIZE, fd); // Read and ignore the mol_name
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
82 | fgets(line, LINESIZE, fd); // Read the molecule info
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
91 | fgets(line, LINESIZE, fd); // Read and ignore the mol_type
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
92 | fgets(line, LINESIZE, fd); // Read the charge_type
| ~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'int read_brix_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
247 | fread(brick, sizeof(char), 512, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'void* open_brix_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
79 | fscanf(fd, "%3s", keyWord);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
86 | fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
93 | fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
100 | fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
109 | fscanf(fd, " %s %f %f %f %f %f %f", keyWord,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
110 | &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
123 | fscanf(fd, " %s %f", keyWord, &prod);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
128 | fscanf(fd, " %s %f", keyWord, &plus);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
135 | fscanf(fd, " %s %f", keyWord, &sigma);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'int read_dsn6_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
233 | fread(brick, sizeof(char), 512, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'void* open_dsn6_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
91 | fread(fileHeader, sizeof(short), 19, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'abinit_readline':
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:279:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
279 | for (i = 0; i < strlen(line); ++i) {
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:70:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function 'int {anonymous}::ReadPARM::readparm(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
435 | fscanf(file, " " DBLFMT, &prm->Charges[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
444 | fscanf(file, " " DBLFMT, &prm->Masses[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
510 | fscanf(file, " " DBLFMT, &prm->Rk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
517 | fscanf(file, " " DBLFMT, &prm->Req[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
524 | fscanf(file, " " DBLFMT, &prm->Tk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
531 | fscanf(file, " " DBLFMT, &prm->Teq[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
538 | fscanf(file, " " DBLFMT, &prm->Pk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
545 | fscanf(file, " " DBLFMT, &prm->Pn[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
552 | fscanf(file, " " DBLFMT, &prm->Phase[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
559 | fscanf(file, " " DBLFMT, &prm->Solty[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
567 | fscanf(file, " " DBLFMT, &prm->Cn1[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
575 | fscanf(file, " " DBLFMT, &prm->Cn2[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
756 | fscanf(file, " " DBLFMT, &prm->HB12[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
763 | fscanf(file, " " DBLFMT, &prm->HB6[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
771 | fscanf(file, " " DBLFMT, &H[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:23: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
853 | fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
854 | &prm->Box[0], &prm->Box[1], &prm->Box[2]);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:23: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
867 | fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
868 | &prm->Natcap, &prm->Cutcap,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
869 | &prm->Xcap, &prm->Ycap, &prm->Zcap);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function 'int mdio_readline(md_file*, char*, int, int)':
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
426 | fgets(buf, n, mf->f);
| ~~~~~^~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: 'vasp_timestep_unitcell' defined but not used [-Wunused-function]
111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
| ^~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'angular_momentum_expon':
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'read_molden_rundata':
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable 'hessian_data' set but not used [-Wunused-but-set-variable]
596 | molfile_qm_hessian_t *hessian_data;
| ^~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: 'whereami' defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: 'thisline' defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: 'have_keyline' defined but not used [-Wunused-function]
1006 | static int have_keyline(FILE *file, const char *keystring1,
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: 'symmetry_expand' defined but not used [-Wunused-function]
711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: 'print_matrix4' defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: 'del_wavefunction' defined but not used [-Wunused-function]
507 | static void del_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: 'replace_wavefunction' defined but not used [-Wunused-function]
490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
| ^~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:48:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: 'get_pte_vdw_radius' defined but not used [-Wunused-function]
109 | static float get_pte_vdw_radius(const int idx)
| ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: 'get_pte_mass' defined but not used [-Wunused-function]
102 | static float get_pte_mass(const int idx)
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'get_pte_label' defined but not used [-Wunused-function]
95 | static const char *get_pte_label(const int idx)
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure':
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=]
127 | sprintf(atom->resname, "%d", resid);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999]
127 | sprintf(atom->resname, "%d", resid);
| ^~~~
In file included from /usr/include/stdio.h:866,
from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 8
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:34:
In function 'strncpy',
inlined from 'read_molden_structure' at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:350:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_molden_structure' at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:351:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_molden_structure' at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:317:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_molden_structure' at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:326:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 11 bytes from a string of length 1023 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'void* open_ccp4_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
304 | fgets(symData, 81, fd);
| ~~~~~^~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: 'vasp_timestep_unitcell' defined but not used [-Wunused-function]
111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
| ^~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'write_vaspposcar_timestep':
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to 'sizeof' in 'strncpy' call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess]
360 | strncpy(tmptype, atom->type, sizeof(atom->type));
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:40:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function 'open_rst_read':
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable 'timesteprst' set but not used [-Wunused-but-set-variable]
48 | double timesteprst;
| ^~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:32:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void* open_cube_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
175 | fgets(readbuf, 1023, cube->fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
181 | fgets(readbuf, 1023, cube->fd); // skip second header line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
326 | fgets(readbuf, 1023, cube->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
337 | fgets(readbuf, 1023, cube->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
339 | fscanf(cube->fd, "%d", &cube->nsets);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
344 | fscanf(cube->fd, "%d", &orb);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
349 | fgets(readbuf, 1023, cube->fd); // gobble up rest of line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:23,
from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:31:
In function 'strncpy',
inlined from 'get_pdb_cryst1' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:119:3,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:277:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 80 bytes from a string of length 82 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:144:5,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 8 bytes from a string of length 52 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:149:5,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 8 bytes from a string of length 44 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:154:5,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 8 bytes from a string of length 36 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'angular_momentum_expon':
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: 'whereami' defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: 'thisline' defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: 'fpexpftoc' defined but not used [-Wunused-function]
1028 | static int fpexpftoc(char *ftocstr) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: 'have_keyline' defined but not used [-Wunused-function]
1006 | static int have_keyline(FILE *file, const char *keystring1,
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:962:12: warning: 'goto_keyline' defined but not used [-Wunused-function]
962 | static int goto_keyline(FILE *file, ...) {
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: 'strtoupper' defined but not used [-Wunused-function]
901 | static char *strtoupper(char *s) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: 'iswhiteline' defined but not used [-Wunused-function]
895 | static int iswhiteline(char *s) {
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:846:13: warning: 'eatwhitelines' defined but not used [-Wunused-function]
846 | static void eatwhitelines(FILE *file) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:13: warning: 'eatline' defined but not used [-Wunused-function]
835 | static void eatline(FILE * fd, int n)
| ^~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: 'symmetry_expand' defined but not used [-Wunused-function]
711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: 'print_matrix4' defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:540:13: warning: 'angular_momentum_expon' defined but not used [-Wunused-function]
540 | static void angular_momentum_expon(int *ang_mom_expon,
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: 'del_wavefunction' defined but not used [-Wunused-function]
507 | static void del_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: 'replace_wavefunction' defined but not used [-Wunused-function]
490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
| ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:471:27: warning: 'add_wavefunction' defined but not used [-Wunused-function]
471 | static qm_wavefunction_t* add_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: 'init_qmdata' defined but not used [-Wunused-function]
437 | static qmdata_t* init_qmdata() {
| ^~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:299:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 70 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:304:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 1 byte from a string of length 66 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:308:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 65 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:317:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 60 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5,
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:326:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5,
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:326:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:330:5,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 10 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:339:5,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 2 bytes from a string of length 6 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In function 'strncpy',
inlined from 'get_pdb_header' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:190:5,
inlined from 'open_pdb_read' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:79:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 9 bytes from a string of length 32 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_header' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:200:5,
inlined from 'open_pdb_read' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:79:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 20 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
| ~~^ ~~
| | |
| long int fio_size_t {aka long long int}
| %lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
| ~~^ ~~~~
| | |
| long int fio_size_t {aka long long int}
| %lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~~~~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function 'int read_spider_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
286 | fread(datablock, total * sizeof(float), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
| ~~^ ~~
| | |
| long int fio_size_t {aka long long int}
| %lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
| ~~^ ~~~~
| | |
| long int fio_size_t {aka long long int}
| %lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~~~~~
| |
| fio_size_t {aka long long int}
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:47:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdheader':
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:191:57: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
191 | } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:204:54: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
204 | if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:222:26: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
222 | if (input_integer[0] != dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:399:45: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
399 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:416:45: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
416 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdstep':
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:621:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
621 | if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT;
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:625:43: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
625 | if ((tmpbuf[2*i]+tmpbuf[2*i+1]) != sizeof(float)*N) return DCD_BADFORMAT;
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable 'readlen' set but not used [-Wunused-but-set-variable]
546 | fio_size_t readlen; /* number of bytes actually read */
| ^~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:89:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'swap8_unaligned' defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'swap4_unaligned' defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: 'fio_readv' defined but not used [-Wunused-function]
459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
| ^~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'swap2_aligned' defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:609:12: warning: 'fio_write_str' defined but not used [-Wunused-function]
609 | static int fio_write_str(fio_fd fd, const char *str) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:605:12: warning: 'fio_read_int32' defined but not used [-Wunused-function]
605 | static int fio_read_int32(fio_fd fd, int *i) {
| ^~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: 'fio_readv' defined but not used [-Wunused-function]
459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_timestep(void*, int, molfile_timestep_t*)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
243 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
252 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_bonds_aux(void*, int*, int**, int**, float**)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
328 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
346 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
355 | fgets(nextline, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
419 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
194 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
203 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'void* open_bgf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
59 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'int getUniqueResID(char*, int)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable 'i' [-Wunused-variable]
443 | int i, uid;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable 'j' [-Wunused-variable]
484 | int i, count, atomdata, pos, idx, xyzcount, j;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable 'oldChain' [-Wunused-variable]
503 | char oldChain[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readAngleBonds(molfile_atom_t*, pdbxParser*)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable 'bondTable' [-Wunused-variable]
803 | int bondTable[32];
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable 'j' [-Wunused-variable]
807 | int i, pos, j, k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable 'modelNum' [-Wunused-variable]
811 | char modelNum[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable 'atom' [-Wunused-variable]
822 | molfile_atom_t * atom;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable 'test' [-Wunused-variable]
884 | int test = parser->nbonds + bnum;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readRMSDBonds(molfile_atom_t*, pdbxParser*)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable 'bondTable' [-Wunused-variable]
984 | int bondTable[32];
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable 'j' [-Wunused-variable]
988 | int i, pos, j, k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable 'modelNum' [-Wunused-variable]
991 | char modelNum[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable 'atom' [-Wunused-variable]
1002 | molfile_atom_t * atom;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'void* open_file_write(const char*, const char*, int)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable 'fd' [-Wunused-variable]
1409 | FILE* fd;
| ^~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)':
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
96 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
104 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
119 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
131 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
153 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
162 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
171 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:41:
In function 'strncpy',
inlined from 'read_tinker_structure' at contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:103:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:866,
from contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:29:
In function 'sprintf',
inlined from 'vtf_error' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:3,
inlined from 'vtf_read_bonds' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1203:5,
inlined from 'vtf_read_bonds' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1193:12:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:10: warning: '%s' directive argument is null [-Wformat-overflow=]
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:32:
In function 'strncat',
inlined from 'vtf_parse_atom' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:538:9,
inlined from 'vtf_parse_structure' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:812:24,
inlined from '_vtf_open_file_read' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:944:5,
inlined from 'vtf_open_file_read' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:970:10:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:122:10: warning: '__builtin___strncat_chk' output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncat',
inlined from 'vtf_parse_atom' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:629:7,
inlined from 'vtf_parse_structure' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:812:24,
inlined from '_vtf_open_file_read' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:944:5,
inlined from 'vtf_open_file_read' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:970:10:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:122:10: warning: '__builtin___strncat_chk' output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
102 | fread(&headersize, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)':
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
91 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
116 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
132 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
149 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
155 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
161 | fgets(line, 80, infile); //one more read to keep us in sync
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
170 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
217 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
237 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
256 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)':
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
371 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
306 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Deferred.cpp -o build/temp.linux-armhf-3.9/layer0/Deferred.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Map.cpp -o build/temp.linux-armhf-3.9/layer0/Map.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_structure':
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
292 | if (NULL == fgets(fbuffer, 1024, data->file))
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
295 | if (NULL == fgets(fbuffer, 1024, data->file))
| ^~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'read_next_timestep':
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable 'numatoms' set but not used [-Wunused-but-set-variable]
103 | int i, numatoms;
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'write_timestep':
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:206:55: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
206 | if (fwrite(tmp, sizeof(double), 3*n, namdbin->fd) != 3*n) {
| ^~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Err.cpp -o build/temp.linux-armhf-3.9/layer0/Err.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:34:
In function 'strncpy',
inlined from 'read_dlpoly_config_structure' at contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:362:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_timestep(void*, int, molfile_timestep_t*)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
288 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
297 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
365 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
387 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
395 | fgets(nextline, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
455 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
241 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
250 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'void* open_xbgf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
72 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/map:60,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:58:
/usr/include/c++/11/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >]':
/usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator' changed in GCC 7.1
2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'void* open_plt_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
69 | fread(intHeader, sizeof(int), 5, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
82 | fread(floatHeader, sizeof(float), 6, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/map:61,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:58:
/usr/include/c++/11/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = {anonymous}::Blob; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >]':
/usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_dlpoly_structure' at contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:267:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function 'read_mmtk_cdf_structure':
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:730:15: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
730 | if (len > sizeof(name)) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function 'read_mmtk_cdf_timestep':
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:1060:16: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
1060 | for (i=0; i<(3 * mmtk->atom_numberdim); i++) {
| ^
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/PostProcess.cpp -o build/temp.linux-armhf-3.9/layer0/PostProcess.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void put_element_ply(PlyFile*, void*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable 'i' [-Wunused-variable]
459 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void ascii_get_element(PlyFile*, char*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable 'i' [-Wunused-variable]
1407 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable 'i' [-Wunused-variable]
1541 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
1629 | fread (&len, sizeof(int), 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
1631 | fread (str, len, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void get_binary_item(FILE*, int, int*, unsigned int*, double*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2057 | fread (ptr, 1, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2063 | fread (ptr, 1, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2069 | fread (ptr, 2, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2075 | fread (ptr, 2, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2081 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2087 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2093 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2099 | fread (ptr, 8, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'void DDmkdir(const string&, mode_t, int, int)':
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:23: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
714 | sprintf(sub, "%03x/", i);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:22: note: directive argument in the range [0, 2147483646]
714 | sprintf(sub, "%03x/", i);
| ^~~~~~~
In file included from /usr/include/stdio.h:866,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 6
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:30: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
722 | sprintf(subsub, "%03x", j);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:29: note: directive argument in the range [0, 2147483646]
722 | sprintf(subsub, "%03x", j);
| ^~~~~~
In file included from /usr/include/stdio.h:866,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 4 and 9 bytes into a destination of size 6
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'char* recreate_command_line(int, char**)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
1334 | line[0] = '\0';
| ~~~~~~~~^~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by 'malloc'
1333 | line = (char *) malloc (sizeof(char) * len);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'std::string framefile(const string&, size_t, size_t, int, int)':
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:35: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
675 | sprintf(answer, "%03x/", d1);
| ^
In file included from /usr/include/stdio.h:866,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 9
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:35: warning: '%03x' directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=]
673 | sprintf(answer, "%03x/%03x/", d1, d2);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:29: note: directive argument in the range [0, 2147483646]
673 | sprintf(answer, "%03x/%03x/", d1, d2);
| ^~~~~~~~~~~~
In file included from /usr/include/stdio.h:866,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 9 and 19 bytes into a destination of size 9
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Feedback.cpp -o build/temp.linux-armhf-3.9/layer0/Feedback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void eatline(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
238 | fgets(readbuf, 1024, fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void* open_xsf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
408 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
442 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
444 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
446 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
448 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
450 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
473 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
508 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function 'int read_parm7_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
78 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
204 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
257 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_resnames(const char*, int, char*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
275 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
289 | fscanf(file, " %d", &cur);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'parmstruct* read_parm7_header(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
368 | fgets(sdum, 512, file);
| ~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
371 | fscanf(file, "%s\n", sdum); // "%FLAG"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
378 | fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
385 | fscanf(file, "%s\n", sdum); // "FORMAT (20a4)"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
399 | fgets(prm->title, sizeof(prm->title), file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
427 | fgets(sdum, sizeof(sdum), file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
439 | fscanf(file,parm7,
| ~~~~~~^~~~~~~~~~~~
440 | &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
441 | &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
442 | &prm->Jparm, &prm->Nparm);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
443 | fscanf(file, parm7,
| ~~~~~~^~~~~~~~~~~~~
444 | &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
445 | &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
446 | &prm->Natyp, &prm->Nphb);
| ~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
447 | fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
448 | &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
449 | &prm->IfBox, &prm->Nmxrs, &prm->IfCap);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
451 | fscanf(file,"%8d",&prm->Numextra); //BB
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int read_parm7_flag(FILE*, const char*, const char*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
79 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
87 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
97 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function 'int {anonymous}::write_structure(void*, int, const molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable 'last_ctnumber' [-Wunused-variable]
1904 | int last_ctnumber = -1;
| ^~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:53:
In function 'strncpy',
inlined from 'read_xyz_structure' at contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:133:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Util.cpp -o build/temp.linux-armhf-3.9/layer0/Util.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Block.cpp -o build/temp.linux-armhf-3.9/layer0/Block.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/ShaderMgr.cpp -o build/temp.linux-armhf-3.9/layer0/ShaderMgr.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'get_atom_radius':
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable 'type' set but not used [-Wunused-but-set-variable]
166 | char *name, *type;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable 'name' set but not used [-Wunused-but-set-variable]
166 | char *name, *type;
| ^~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Match.cpp -o build/temp.linux-armhf-3.9/layer0/Match.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Field.cpp -o build/temp.linux-armhf-3.9/layer0/Field.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:34:
In function 'strncpy',
inlined from 'get_pqr_cryst1' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:109:3,
inlined from 'read_pqr_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:319:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pqr_fields' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:137:3,
inlined from 'read_pqr_structure' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 68 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pqr_fields' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:138:3,
inlined from 'read_pqr_structure' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 63 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pqr_fields' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:139:3,
inlined from 'read_pqr_structure' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 1 byte from a string of length 59 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pqr_fields' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:140:3,
inlined from 'read_pqr_structure' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 58 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/ButMode.cpp -o build/temp.linux-armhf-3.9/layer1/ButMode.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/c++/11/map:61,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:58:
/usr/include/c++/11/bits/stl_map.h: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const':
/usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Util2.cpp -o build/temp.linux-armhf-3.9/layer0/Util2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Matrix.cpp -o build/temp.linux-armhf-3.9/layer0/Matrix.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/CarveHelper.cpp -o build/temp.linux-armhf-3.9/layer0/CarveHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/ContourSurf.cpp -o build/temp.linux-armhf-3.9/layer0/ContourSurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Vector.cpp -o build/temp.linux-armhf-3.9/layer0/Vector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/File.cpp -o build/temp.linux-armhf-3.9/layer0/File.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/CGO.cpp -o build/temp.linux-armhf-3.9/layer1/CGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Crystal.cpp -o build/temp.linux-armhf-3.9/layer0/Crystal.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/GenericBuffer.cpp -o build/temp.linux-armhf-3.9/layer0/GenericBuffer.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Word.cpp -o build/temp.linux-armhf-3.9/layer0/Word.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'int read_edm_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
240 | fgets(readbuf, 13, edm->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'void eatline(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
44 | fgets(readbuf, 1024, fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/MemoryDebug.cpp -o build/temp.linux-armhf-3.9/layer0/MemoryDebug.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function 'void* open_fs4_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
79 | fread(&dataBegin, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/GraphicsUtil.cpp -o build/temp.linux-armhf-3.9/layer0/GraphicsUtil.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'angular_momentum_expon':
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'have_gamess':
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable 'word' set but not used [-Wunused-but-set-variable]
1106 | char word[3][BUFSIZ];
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_stats':
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable 'word' set but not used [-Wunused-but-set-variable]
2264 | char word[7][BUFSIZ];
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_wavefunction':
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable 'word' set but not used [-Wunused-but-set-variable]
3573 | char word[6][BUFSIZ];
| ^~~~
At top level:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1002:13: warning: 'print_input_data' defined but not used [-Wunused-function]
1002 | static void print_input_data(qmdata_t *data) {
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: 'get_pte_vdw_radius' defined but not used [-Wunused-function]
109 | static float get_pte_vdw_radius(const int idx)
| ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: 'get_pte_mass' defined but not used [-Wunused-function]
102 | static float get_pte_mass(const int idx)
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'get_pte_label' defined but not used [-Wunused-function]
95 | static const char *get_pte_label(const int idx)
| ^~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: 'whereami' defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: 'thisline' defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: 'fpexpftoc' defined but not used [-Wunused-function]
1028 | static int fpexpftoc(char *ftocstr) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: 'strtoupper' defined but not used [-Wunused-function]
901 | static char *strtoupper(char *s) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: 'iswhiteline' defined but not used [-Wunused-function]
895 | static int iswhiteline(char *s) {
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: 'print_matrix4' defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/MemoryUsage.cpp -o build/temp.linux-armhf-3.9/layer0/MemoryUsage.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUT.cpp -o build/temp.linux-armhf-3.9/layer1/FontGLUT.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:155:
In function 'strncpy',
inlined from 'read_gamess_rundata' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:615:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_gamess_rundata' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:620:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4096 bytes from a string of length 8191 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_gamess_rundata' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:621:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_gamess_rundata' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:622:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1618:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Isosurf.cpp -o build/temp.linux-armhf-3.9/layer0/Isosurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer0/MemoryUsage.cpp: In function 'size_t pymol::memory_usage()':
layer0/MemoryUsage.cpp:38:21: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=]
38 | std::fscanf(fp, "%*zu%zu", &vmRSS);
| ^~~~~~~~~
layer0/MemoryUsage.cpp:38:16: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
38 | std::fscanf(fp, "%*zu%zu", &vmRSS);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/MyPNG.cpp -o build/temp.linux-armhf-3.9/layer0/MyPNG.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/ccealignmodule.cpp -o build/temp.linux-armhf-3.9/layer0/ccealignmodule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In function 'strncat',
inlined from 'get_basis_options' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1422:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:122:10: warning: '__builtin___strncat_chk' output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncat',
inlined from 'get_basis_options' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1411:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:122:10: warning: '__builtin___strncat_chk' output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_fmoxyz' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1682:5,
inlined from 'get_input_structure' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1537:12:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_proc_mem.isra' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1279:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 256 bytes from a string of length 8191 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_proc_mem.isra' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1272:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' specified bound 256 equals destination size [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_contrl' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1981:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' specified bound 8192 equals destination size [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_contrl_firefly' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1818:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' specified bound 8192 equals destination size [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Parse.cpp -o build/temp.linux-armhf-3.9/layer0/Parse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In function 'strncpy',
inlined from 'symmetry_expand' at contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:819:5,
inlined from 'get_traj_frame.constprop' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2931:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 10 bytes from a string of length 10 [-Wstringop-truncation]
91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Pixmap.cpp -o build/temp.linux-armhf-3.9/layer0/Pixmap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUT8x13.cpp -o build/temp.linux-armhf-3.9/layer1/FontGLUT8x13.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUT9x15.cpp -o build/temp.linux-armhf-3.9/layer1/FontGLUT9x15.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Ortho.cpp -o build/temp.linux-armhf-3.9/layer1/Ortho.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'void line3(FILE*, GRASSP*)':
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
186 | fread(line3, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)':
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro 'TRASH'
284 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
285 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro 'TRASH'
291 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro 'TRASH'
305 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
306 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro 'TRASH'
307 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro 'TRASH'
311 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro 'TRASH'
313 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro 'TRASH'
318 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
319 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro 'TRASH'
320 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro 'TRASH'
328 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
329 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro 'TRASH'
330 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro 'TRASH'
354 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
355 | fread(vertex, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro 'TRASH'
356 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro 'TRASH'
357 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
358 | fread(access, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro 'TRASH'
359 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro 'TRASH'
360 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
361 | fread(normal, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro 'TRASH'
362 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro 'TRASH'
371 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
372 | fread(triangle, 3 * sizeof(int), ntriangles, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro 'TRASH'
373 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro 'TRASH'
374 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
375 | fread(properties, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro 'TRASH'
394 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
395 | fread(striangle, sizeof(short), 3 * ntriangles, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro 'TRASH'
396 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro 'TRASH'
397 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
398 | fread(properties, sizeof(float), 3 * nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUTHel10.cpp -o build/temp.linux-armhf-3.9/layer1/FontGLUTHel10.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)':
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
278 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
297 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
319 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
357 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
223 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
241 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'void* open_mdf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
164 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
176 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
183 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Scene.cpp -o build/temp.linux-armhf-3.9/layer1/Scene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUTHel12.cpp -o build/temp.linux-armhf-3.9/layer1/FontGLUTHel12.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Shaker.cpp -o build/temp.linux-armhf-3.9/layer1/Shaker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUTHel18.cpp -o build/temp.linux-armhf-3.9/layer1/FontGLUTHel18.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/marching_cubes.cpp -o build/temp.linux-armhf-3.9/layer0/marching_cubes.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontType.cpp -o build/temp.linux-armhf-3.9/layer1/FontType.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SymOp.cpp -o build/temp.linux-armhf-3.9/layer1/SymOp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer1/SymOp.cpp: In member function 'std::string pymol::SymOp::to_string() const':
layer1/SymOp.cpp:37:32: warning: '%d' directive output may be truncated writing between 1 and 4 bytes into a region of size between 0 and 5 [-Wformat-truncation=]
37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5);
| ^~
layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5);
| ^~~~~~~~~~~
layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
In file included from /usr/include/stdio.h:866,
from /usr/include/c++/11/cstdio:42,
from /usr/include/c++/11/ext/string_conversions.h:43,
from /usr/include/c++/11/bits/basic_string.h:6606,
from /usr/include/c++/11/string:55,
from layer1/SymOp.h:9,
from layer1/SymOp.cpp:7:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 6 and 17 bytes into a destination of size 8
70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
71 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SymOpPConv.cpp -o build/temp.linux-armhf-3.9/layer1/SymOpPConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Wizard.cpp -o build/temp.linux-armhf-3.9/layer1/Wizard.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/ShaderPrg.cpp -o build/temp.linux-armhf-3.9/layer0/ShaderPrg.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SymOpTools.cpp -o build/temp.linux-armhf-3.9/layer1/SymOpTools.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/os_gl.cpp -o build/temp.linux-armhf-3.9/layer0/os_gl.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Movie.cpp -o build/temp.linux-armhf-3.9/layer1/Movie.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Basis.cpp -o build/temp.linux-armhf-3.9/layer1/Basis.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer1/Wizard.cpp: In member function 'virtual int CWizard::release(int, int, int, int)':
layer1/Wizard.cpp:571:18: warning: unused variable 'wiz' [-Wunused-variable]
571 | if (auto wiz = WizardGet(G)) {
| ^~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/P.cpp -o build/temp.linux-armhf-3.9/layer1/P.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Symmetry.cpp -o build/temp.linux-armhf-3.9/layer1/Symmetry.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Sphere.cpp -o build/temp.linux-armhf-3.9/layer0/Sphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/AssemblyHelpers.cpp -o build/temp.linux-armhf-3.9/layer2/AssemblyHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Tetsurf.cpp -o build/temp.linux-armhf-3.9/layer0/Tetsurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Text.cpp -o build/temp.linux-armhf-3.9/layer1/Text.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/DistSet.cpp -o build/temp.linux-armhf-3.9/layer2/DistSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/AtomInfo.cpp -o build/temp.linux-armhf-3.9/layer2/AtomInfo.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SceneMouse.cpp -o build/temp.linux-armhf-3.9/layer1/SceneMouse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/PConv.cpp -o build/temp.linux-armhf-3.9/layer1/PConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectCGO.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectCGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Texture.cpp -o build/temp.linux-armhf-3.9/layer0/Texture.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/GadgetSet.cpp -o build/temp.linux-armhf-3.9/layer2/GadgetSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer1/SceneMouse.cpp: In function 'void SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, const NamedPicking&, int, bool)':
layer1/SceneMouse.cpp:455:32: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 237 [-Wformat-truncation=]
455 | " You clicked %s -> (%s)\n", buffer.c_str(), name ENDFB(G);
| ^~ ~~~~
In file included from /usr/include/stdio.h:866,
from /usr/include/c++/11/cstdio:42,
from /usr/include/c++/11/ext/string_conversions.h:43,
from /usr/include/c++/11/bits/basic_string.h:6606,
from /usr/include/c++/11/string:55,
from /usr/include/c++/11/bits/locale_classes.h:40,
from /usr/include/c++/11/bits/ios_base.h:41,
from /usr/include/c++/11/ios:42,
from /usr/include/c++/11/ostream:38,
from include/pymol/zstring_view.h:12,
from layer1/SceneMouse.h:4,
from layer1/SceneMouse.cpp:1:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output 21 or more bytes (assuming 276) into a destination of size 255
70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
71 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Picking.cpp -o build/temp.linux-armhf-3.9/layer1/Picking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/AtomInfoHistory.cpp -o build/temp.linux-armhf-3.9/layer2/AtomInfoHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Pop.cpp -o build/temp.linux-armhf-3.9/layer1/Pop.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/PyMOLObject.cpp -o build/temp.linux-armhf-3.9/layer1/PyMOLObject.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Tracker.cpp -o build/temp.linux-armhf-3.9/layer0/Tracker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/ScenePicking.cpp -o build/temp.linux-armhf-3.9/layer1/ScenePicking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectCallback.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectCallback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/HydrogenAdder.cpp -o build/temp.linux-armhf-3.9/layer2/HydrogenAdder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Triangle.cpp -o build/temp.linux-armhf-3.9/layer0/Triangle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectDist.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectDist.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/MmodTyping.cpp -o build/temp.linux-armhf-3.9/layer2/MmodTyping.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SceneRay.cpp -o build/temp.linux-armhf-3.9/layer1/SceneRay.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/c++/11/vector:72,
from layer1/Picking.h:9,
from layer0/Base.h:23,
from layer1/PyMOLObject.h:23,
from layer1/PyMOLObject.cpp:24:
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:67,
from layer1/Picking.h:9,
from layer0/Base.h:23,
from layer1/PyMOLObject.h:23,
from layer1/PyMOLObject.cpp:24:
/usr/include/c++/11/bits/stl_vector.h: In function 'int ObjectStateFromPyList(PyMOLGlobals*, PyObject*, CObjectState*)':
/usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/MmtfMoleculeReader.cpp -o build/temp.linux-armhf-3.9/layer2/MmtfMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Ray.cpp -o build/temp.linux-armhf-3.9/layer1/Ray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/BondTypeHistory.cpp -o build/temp.linux-armhf-3.9/layer2/BondTypeHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/Mol2Typing.cpp -o build/temp.linux-armhf-3.9/layer2/Mol2Typing.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/CifFile.cpp -o build/temp.linux-armhf-3.9/layer2/CifFile.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMolecule.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectMolecule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/MolV3000.cpp -o build/temp.linux-armhf-3.9/layer2/MolV3000.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SceneRender.cpp -o build/temp.linux-armhf-3.9/layer1/SceneRender.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer1/Ray.cpp: In function 'void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)':
layer1/Ray.cpp:1535:20: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=]
1535 | "%s"
| ^~
......
1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
| ~~~~~~~~
layer1/Ray.cpp:1530:18: note: 'sprintf' output between 116 and 3302 bytes into a destination of size 1024
1530 | sprintf(buffer,
| ~~~~~~~^~~~~~~~
1531 | "Transform {\n"
| ~~~~~~~~~~~~~~~
1532 | " translation %8.6f %8.6f %8.6f\n"
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1533 | " rotation %8.6f %8.6f %8.6f %8.6f\n"
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1534 | " children [\n"
| ~~~~~~~~~~~~~~~
1535 | "%s"
| ~~~~
1536 | " ]\n"
| ~~~~~~
1537 | "}\n",
| ~~~~~~
1538 | vert2[0] - mid[0],
| ~~~~~~~~~~~~~~~~~~
1539 | vert2[1] - mid[1],
| ~~~~~~~~~~~~~~~~~~
1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectGadget.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectGadget.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectAlignment.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectAlignment.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/CifMoleculeReader.cpp -o build/temp.linux-armhf-3.9/layer2/CifMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectGadgetRamp.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectGadgetRamp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/ScrollBar.cpp -o build/temp.linux-armhf-3.9/layer1/ScrollBar.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/COLLADA.cpp -o build/temp.linux-armhf-3.9/layer1/COLLADA.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMolecule.cpp: In function 'CoordSet* ObjectMoleculeMOLStr2CoordSet.constprop(PyMOLGlobals*, const char*, AtomInfoType**, const char**)':
layer2/ObjectMolecule.cpp:7579:37: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=]
7579 | " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G)
| ^~ ~~~~~~~
In file included from layer1/Ortho.h:32,
from layer2/ObjectMolecule.cpp:31:
layer0/Feedback.h:274:15: note: 'snprintf' output between 34 and 289 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMolecule.cpp:7578:3: note: in expansion of macro 'PRINTFB'
7578 | PRINTFB(G, FB_ObjectMolecule, FB_Blather)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Seq.cpp -o build/temp.linux-armhf-3.9/layer1/Seq.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/TypeFace.cpp -o build/temp.linux-armhf-3.9/layer1/TypeFace.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectGroup.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectGroup.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepCylBond.cpp -o build/temp.linux-armhf-3.9/layer2/RepCylBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Rep.cpp -o build/temp.linux-armhf-3.9/layer1/Rep.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/View.cpp -o build/temp.linux-armhf-3.9/layer1/View.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMolecule.cpp: In member function 'virtual void ObjectMolecule::update()':
layer2/ObjectMolecule.cpp:10605:82: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=]
10605 | " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer2/ObjectMolecule.cpp:31:
layer0/Feedback.h:274:15: note: 'snprintf' output between 68 and 333 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMolecule.cpp:10604:13: note: in expansion of macro 'PRINTFB'
10604 | PRINTFB(G, FB_ObjectMolecule, FB_Blather)
| ^~~~~~~
layer2/ObjectMolecule.cpp: In function 'int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, const float*, int, int)':
layer2/ObjectMolecule.cpp:10731:43: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=]
10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ^~
10732 | buffer, v[0], v[1], v[2], state + 1, mode, 0);
| ~~~~~~
layer2/ObjectMolecule.cpp:10731:21: note: directive argument in the range [-2147483647, 2147483647]
10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp:10731:14: note: 'sprintf' output between 78 and 2036 bytes into a destination of size 1024
10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
10732 | buffer, v[0], v[1], v[2], state + 1, mode, 0);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Character.cpp -o build/temp.linux-armhf-3.9/layer1/Character.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMap.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectMap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Setting.cpp -o build/temp.linux-armhf-3.9/layer1/Setting.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepNonbonded.cpp -o build/temp.linux-armhf-3.9/layer2/RepNonbonded.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/Sculpt.cpp -o build/temp.linux-armhf-3.9/layer2/Sculpt.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Color.cpp -o build/temp.linux-armhf-3.9/layer1/Color.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDihedral.cpp -o build/temp.linux-armhf-3.9/layer2/RepDihedral.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepNonbondedSphere.cpp -o build/temp.linux-armhf-3.9/layer2/RepNonbondedSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMap.cpp: In function 'void ObjectMapDump(const ObjectMap*, const char*, int, int)':
layer2/ObjectMap.cpp:5982:24: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 239 [-Wformat-truncation=]
5982 | " ObjectMapDump: %s written to %s\n", om->Name, fname ENDFB(om->G);
| ^~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.9/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output 30 or more bytes (assuming 285) into a destination of size 255
70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
71 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDistDash.cpp -o build/temp.linux-armhf-3.9/layer2/RepDistDash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepRibbon.cpp -o build/temp.linux-armhf-3.9/layer2/RepRibbon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/SculptCache.cpp -o build/temp.linux-armhf-3.9/layer2/SculptCache.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMolecule2.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectMolecule2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/SideChainHelper.cpp -o build/temp.linux-armhf-3.9/layer2/SideChainHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/CoordSet.cpp -o build/temp.linux-armhf-3.9/layer2/CoordSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDistLabel.cpp -o build/temp.linux-armhf-3.9/layer2/RepDistLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSphere.cpp -o build/temp.linux-armhf-3.9/layer2/RepSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)':
layer2/ObjectMap.cpp:2961:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2961 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.9/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
71 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:2970:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2970 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.9/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
71 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:2976:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2976 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.9/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
71 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:3058:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
3058 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.9/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
71 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/VFont.cpp -o build/temp.linux-armhf-3.9/layer2/VFont.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMap.cpp: In function 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)':
layer2/ObjectMap.cpp:4290:18: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
4290 | " ObjectMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.9/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255
70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
71 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:4290:18: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
4290 | " ObjectMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.9/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255
70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
71 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDot.cpp -o build/temp.linux-armhf-3.9/layer2/RepDot.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/AtomIterators.cpp -o build/temp.linux-armhf-3.9/layer3/AtomIterators.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSphereGenerate.cpp -o build/temp.linux-armhf-3.9/layer2/RepSphereGenerate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/ExecutivePython.cpp -o build/temp.linux-armhf-3.9/layer3/ExecutivePython.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMesh.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMolecule2.cpp: In function 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, const float*, int, int, int, int)':
layer2/ObjectMolecule2.cpp:335:27: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
335 | " ObjMol: created %s/%s/%s/%s`%d%c/%s\n",
| ^~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.9/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMolecule2.cpp:24:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 26 and 291 bytes into a destination of size 255
70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
71 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/CifDataValueFormatter.cpp -o build/temp.linux-armhf-3.9/layer3/CifDataValueFormatter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepEllipsoid.cpp -o build/temp.linux-armhf-3.9/layer2/RepEllipsoid.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSphereImmediate.cpp -o build/temp.linux-armhf-3.9/layer2/RepSphereImmediate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Editor.cpp -o build/temp.linux-armhf-3.9/layer3/Editor.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMolecule3.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectMolecule3.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMesh.cpp: In member function 'virtual void ObjectMesh::update()':
layer2/ObjectMesh.cpp:502:41: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=]
502 | "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectMesh.cpp:33:
layer0/Feedback.h:274:15: note: 'snprintf' output between 50 and 305 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:501:9: note: in expansion of macro 'PRINTFB'
501 | PRINTFB(I->G, FB_ObjectMesh, FB_Errors)
| ^~~~~~~
layer2/ObjectMesh.cpp:535:40: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=]
535 | " ObjectMesh: updating \"%s\".\n", I->Name ENDFB(G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectMesh.cpp:33:
layer0/Feedback.h:274:15: note: 'snprintf' output between 27 and 282 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:534:13: note: in expansion of macro 'PRINTFB'
534 | PRINTFB(G, FB_ObjectMesh, FB_Details)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/MaeExportHelpers.cpp -o build/temp.linux-armhf-3.9/layer3/MaeExportHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Control.cpp -o build/temp.linux-armhf-3.9/layer1/Control.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMesh.cpp: In function 'void ObjectMeshDump(ObjectMesh*, const char*, int, int)':
layer2/ObjectMesh.cpp:329:27: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
329 | " ObjectMeshDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectMesh.cpp:33:
layer0/Feedback.h:274:15: note: 'snprintf' output 31 or more bytes (assuming 286) into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:328:7: note: in expansion of macro 'PRINTFB'
328 | PRINTFB(I->G, FB_ObjectMesh, FB_Actions)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepLabel.cpp -o build/temp.linux-armhf-3.9/layer2/RepLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSurface.cpp -o build/temp.linux-armhf-3.9/layer2/RepSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectSlice.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectSlice.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Editor.cpp: In function 'void EditorPrepareDrag(PyMOLGlobals*, pymol::CObject*, int, int, int, int)':
layer3/Editor.cpp:1933:29: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
1933 | " Editor: grabbing (%s).", name ENDFB(G);
| ^~ ~~~~
In file included from layer1/Ortho.h:32,
from layer1/ButMode.h:20,
from layer3/Editor.cpp:28:
layer0/Feedback.h:274:15: note: 'snprintf' output between 22 and 277 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Editor.cpp:1932:7: note: in expansion of macro 'PRINTFB'
1932 | PRINTFB(G, FB_Editor, FB_Blather)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/SelectorTmp.cpp -o build/temp.linux-armhf-3.9/layer3/SelectorTmp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/MoleculeExporter.cpp -o build/temp.linux-armhf-3.9/layer3/MoleculeExporter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Editor.cpp: In function 'void EditorDefineExtraPks(PyMOLGlobals*)':
layer3/Editor.cpp:335:29: warning: '%s' directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=]
335 | sprintf(buffer, "(byres %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:335:12: note: 'sprintf' output between 9 and 264 bytes into a destination of size 256
335 | sprintf(buffer, "(byres %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:337:31: warning: '%s' directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=]
337 | sprintf(buffer, "(bychain %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:337:12: note: 'sprintf' output between 11 and 266 bytes into a destination of size 256
337 | sprintf(buffer, "(bychain %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:339:32: warning: '%s' directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=]
339 | sprintf(buffer, "(byobject %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:339:12: note: 'sprintf' output between 12 and 267 bytes into a destination of size 256
339 | sprintf(buffer, "(byobject %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Extrude.cpp -o build/temp.linux-armhf-3.9/layer1/Extrude.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepMesh.cpp -o build/temp.linux-armhf-3.9/layer2/RepMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/SpecRec.cpp -o build/temp.linux-armhf-3.9/layer3/SpecRec.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Executive.cpp -o build/temp.linux-armhf-3.9/layer3/Executive.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectSlice.cpp: In member function 'virtual void ObjectSlice::update()':
layer2/ObjectSlice.cpp:639:42: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=]
639 | "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSlice.cpp:34:
layer0/Feedback.h:274:15: note: 'snprintf' output between 51 and 306 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSlice.cpp:638:9: note: in expansion of macro 'PRINTFB'
638 | PRINTFB(I->G, FB_ObjectSlice, FB_Errors)
| ^~~~~~~
layer2/ObjectSlice.cpp:650:39: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=]
650 | " ObjectSlice: updating \"%s\".\n", I->Name ENDFB(I->G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSlice.cpp:34:
layer0/Feedback.h:274:15: note: 'snprintf' output between 28 and 283 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSlice.cpp:649:11: note: in expansion of macro 'PRINTFB'
649 | PRINTFB(I->G, FB_ObjectSlice, FB_Blather)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/SpecRecSpecial.cpp -o build/temp.linux-armhf-3.9/layer3/SpecRecSpecial.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectSurface.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Font.cpp -o build/temp.linux-armhf-3.9/layer1/Font.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer5/main.cpp -o build/temp.linux-armhf-3.9/layer5/main.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer4/Cmd.cpp -o build/temp.linux-armhf-3.9/layer4/Cmd.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/ov_utility.cpp -o build/temp.linux-armhf-3.9/ov/src/ov_utility.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)':
layer2/ObjectSurface.cpp:268:30: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
268 | " ObjectSurfaceDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSurface.cpp:35:
layer0/Feedback.h:274:15: note: 'snprintf' output 34 or more bytes (assuming 289) into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSurface.cpp:267:7: note: in expansion of macro 'PRINTFB'
267 | PRINTFB(I->G, FB_ObjectSurface, FB_Actions)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/MovieScene.cpp -o build/temp.linux-armhf-3.9/layer3/MovieScene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVContext.cpp -o build/temp.linux-armhf-3.9/ov/src/OVContext.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVHeap.cpp -o build/temp.linux-armhf-3.9/ov/src/OVHeap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectSurface.cpp: In member function 'virtual void ObjectSurface::update()':
layer2/ObjectSurface.cpp:493:43: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
493 | " ObjectSurface: updating \"%s\".\n", I->Name ENDFB(I->G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSurface.cpp:35:
layer0/Feedback.h:274:15: note: 'snprintf' output between 30 and 285 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSurface.cpp:492:13: note: in expansion of macro 'PRINTFB'
492 | PRINTFB(I->G, FB_ObjectSurface, FB_Details)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVHeapArray.cpp -o build/temp.linux-armhf-3.9/ov/src/OVHeapArray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVLexicon.cpp -o build/temp.linux-armhf-3.9/ov/src/OVLexicon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepWireBond.cpp -o build/temp.linux-armhf-3.9/layer2/RepWireBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVOneToAny.cpp -o build/temp.linux-armhf-3.9/ov/src/OVOneToAny.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVOneToOne.cpp -o build/temp.linux-armhf-3.9/ov/src/OVOneToOne.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectVolume.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectVolume.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVRandom.cpp -o build/temp.linux-armhf-3.9/ov/src/OVRandom.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)':
layer3/Executive.cpp:9007:58: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=]
9007 | " Remove: eliminated %d atoms in model \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 42 and 307 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9006:15: note: in expansion of macro 'PRINTFB'
9006 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)':
layer3/Executive.cpp:11424:28: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11424 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~
11425 | name, nSet, obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11424:17: note: directive argument in the range [1, 2147483647]
11424 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 42 and 560 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11423:15: note: in expansion of macro 'PRINTF'
11423 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function 'PyObject* ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, const char*, int, int, int)':
layer3/Executive.cpp:11505:26: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11505 | " Getting: %s for %d bonds in object \"%s\".\n",
| ^~
11506 | name, nSet, obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11505:15: note: directive argument in the range [1, 2147483647]
11505 | " Getting: %s for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 38 and 556 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11504:13: note: in expansion of macro 'PRINTF'
11504 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)':
layer3/Executive.cpp:11605:62: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 217 [-Wformat-truncation=]
11605 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 42 or more bytes (assuming 306) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11604:17: note: in expansion of macro 'PRINTF'
11604 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function 'int ExecutiveUnsetBondSetting(PyMOLGlobals*, int, const char*, const char*, int, int, int)':
layer3/Executive.cpp:11684:26: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11684 | " Setting: %s unset for %d bonds in object \"%s\".\n",
| ^~
11685 | name, nSet, rec->obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11684:15: note: directive argument in the range [1, 2147483647]
11684 | " Setting: %s unset for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 44 and 562 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11683:13: note: in expansion of macro 'PRINTF'
11683 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, const char*, pymol::CObject*, int, int, int)':
layer3/Executive.cpp:12226:30: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12226 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
12227 | name, value2, obj->Name, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12226:19: note: directive argument in the range [1, 2147483647]
12226 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 43 and 1584 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12225:17: note: in expansion of macro 'PRINTF'
12225 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12218:30: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12218 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
12219 | name, value2, obj->Name ENDF(G);
| ~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 34 and 1566 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12217:17: note: in expansion of macro 'PRINTF'
12217 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12197:29: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12197 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~ ~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 21 and 1298 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12197:11: note: in expansion of macro 'PRINTF'
12197 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~~~~~
layer2/ObjectVolume.cpp: In function 'ObjectMapState* ObjectVolumeStateGetMapState(ObjectVolumeState*)':
layer2/ObjectVolume.cpp:74:33: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
74 | "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName
| ^~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.9/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectVolume.cpp:20:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255
70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
71 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)':
layer3/Executive.cpp:12129:36: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12129 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
12130 | name, op.i4, rec->obj->Name ENDF(G);
| ~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 42 and 561 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12128:23: note: in expansion of macro 'PRINTF'
12128 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12097:32: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12097 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~
12098 | name, value2, nObj, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12097:21: note: directive argument in the range [1, 2147483647]
12097 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12097:21: note: directive argument in the range [1, 2147483647]
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 43 and 1338 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12096:19: note: in expansion of macro 'PRINTF'
12096 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12094:32: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12094 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
| ^~ ~~~~
layer3/Executive.cpp:12094:21: note: directive argument in the range [1, 2147483647]
12094 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 34 and 1320 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12093:19: note: in expansion of macro 'PRINTF'
12093 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12161:36: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12161 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
12162 | name, value2, rec->obj->Name, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12161:25: note: directive argument in the range [1, 2147483647]
12161 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 43 and 1584 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12160:23: note: in expansion of macro 'PRINTF'
12160 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12153:36: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12153 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
12154 | name, value2, rec->obj->Name ENDF(G);
| ~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 34 and 1566 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12152:23: note: in expansion of macro 'PRINTF'
12152 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12057:29: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12057 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~ ~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 21 and 1298 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12057:11: note: in expansion of macro 'PRINTF'
12057 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepAngle.cpp -o build/temp.linux-armhf-3.9/layer2/RepAngle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Executive.cpp: In function 'bool ExecutiveSetSymmetry(PyMOLGlobals*, pymol::zstring_view, int, const CSymmetry&, bool)':
layer3/Executive.cpp:5951:43: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 202 [-Wformat-truncation=]
5951 | " %s-Details: Updated symmetry for '%s'\n", __func__, obj->Name ENDFB(G);
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 56 and 311 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5950:7: note: in expansion of macro 'PRINTFB'
5950 | PRINTFB(G, FB_Executive, FB_Details)
| ^~~~~~~
layer3/Executive.cpp:5942:46: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=]
5942 | " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__,
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 84 and 339 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5941:7: note: in expansion of macro 'PRINTFB'
5941 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/PlugIOManager.cpp -o build/temp.linux-armhf-3.9/layer3/PlugIOManager.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/c++/11/vector:72,
from layer0/MemoryDebug.h:21,
from layer4/Cmd.cpp:53:
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In function 'PyObject* CmdCifGetArray(PyObject*, PyObject*)':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int, pymol::zstring_view)':
layer3/Executive.cpp:9358:53: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=]
9358 | " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 35 and 300 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9357:17: note: in expansion of macro 'PRINTFB'
9357 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp:9371:67: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=]
9371 | " Valence: %d bond valences adjusted in model \"%s\".\n", cnt,
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 49 and 314 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9370:17: note: in expansion of macro 'PRINTFB'
9370 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp:9383:59: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=]
9383 | " Unbond: %d bonds removed from model \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 41 and 306 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9382:17: note: in expansion of macro 'PRINTFB'
9382 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepCartoon.cpp -o build/temp.linux-armhf-3.9/layer2/RepCartoon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer4/Menu.cpp -o build/temp.linux-armhf-3.9/layer4/Menu.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/PlugIOManager.cpp: In function 'pymol::CObject* PlugIOManagerLoad(PyMOLGlobals*, pymol::CObject**, const char*, int, int, const char*, int)':
layer3/PlugIOManager.cpp:946:65: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=]
946 | " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G);
| ^~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.9/Python.h:25,
from layer0/os_python.h:34,
from layer3/PlugIOManager.cpp:20:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 58 and 313 bytes into a destination of size 255
70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
71 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, pymol::zstring_view, int, int, int)':
layer3/Executive.cpp:11877:70: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=]
11877 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 42 or more bytes (assuming 297) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11876:25: note: in expansion of macro 'PRINTF'
11876 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11877:70: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=]
11877 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 42 or more bytes (assuming 297) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11876:25: note: in expansion of macro 'PRINTF'
11876 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11788:42: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11788 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~
11789 | name, value, nObj, state + 1 ENDF(G);
| ~~~~~
layer3/Executive.cpp:11788:21: note: directive argument in the range [1, 2147483647]
11788 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:11788:21: note: directive argument in the range [1, 2147483647]
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 43 or more bytes (assuming 1084) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11787:19: note: in expansion of macro 'PRINTF'
11787 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11785:42: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11785 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
| ^~ ~~~~~
layer3/Executive.cpp:11785:21: note: directive argument in the range [1, 2147483647]
11785 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 34 or more bytes (assuming 1066) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11784:19: note: in expansion of macro 'PRINTF'
11784 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11909:46: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11909 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
11910 | name, value, rec->obj->Name, state + 1 ENDF(G);
| ~~~~~
layer3/Executive.cpp:11909:25: note: directive argument in the range [1, 2147483647]
11909 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 43 or more bytes (assuming 1330) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11908:23: note: in expansion of macro 'PRINTF'
11908 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11902:46: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11902 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
11903 | name, value, rec->obj->Name ENDF(G);
| ~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 34 or more bytes (assuming 1312) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11901:23: note: in expansion of macro 'PRINTF'
11901 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11744:39: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11744 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G);
| ^~ ~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 21 or more bytes (assuming 1044) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11744:11: note: in expansion of macro 'PRINTF'
11744 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G);
| ^~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/RingFinder.cpp -o build/temp.linux-armhf-3.9/layer3/RingFinder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Executive.cpp: In function 'void ExecutiveManageObject(PyMOLGlobals*, pymol::CObject*, int, int)':
layer3/Executive.cpp:14447:37: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
14447 | " Executive-Warning: name \"%s\" collides with a selection language keyword.\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 73 and 328 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:14446:7: note: in expansion of macro 'PRINTFB'
14446 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp:14442:36: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
14442 | " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 61 and 316 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:14441:7: note: in expansion of macro 'PRINTFB'
14441 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp:14473:11: warning: 'char* strcpy(char*, const char*)' writing between 1 and 256 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=]
14473 | strcpy(rec->name, obj->Name);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveCopy(PyMOLGlobals*, const char*, const char*, int)':
layer3/Executive.cpp:9665:25: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
9665 | " Executive: object %s created.\n", oDst->Name ENDFB(G);
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 30 and 285 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9664:3: note: in expansion of macro 'PRINTFB'
9664 | PRINTFB(G, FB_Executive, FB_Actions)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer4/PopUp.cpp -o build/temp.linux-armhf-3.9/layer4/PopUp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Executive.cpp: In function 'void ExecutiveManageSelection(PyMOLGlobals*, const char*)':
layer3/Executive.cpp:14559:11: warning: 'char* strcpy(char*, const char*)' writing 1 or more bytes into a region of size 0 overflows the destination [-Wstringop-overflow=]
14559 | strcpy(rec->name, name);
| ~~~~~~^~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In member function 'virtual int CExecutive::drag(int, int, int)':
layer3/Executive.cpp:15471:55: warning: '%s' directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=]
15471 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
| ^~
15472 | order_input, (location == -2) ? "upper" : "current");
| ~~~~~~~~~~~
layer3/Executive.cpp:15471:26: note: 'sprintf' output between 32 and 1057 bytes into a destination of size 1024
15471 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
15472 | order_input, (location == -2) ? "upper" : "current");
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Seeker.cpp -o build/temp.linux-armhf-3.9/layer3/Seeker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveUnsetSetting(PyMOLGlobals*, int, pymol::zstring_view, int, int, int)':
layer3/Executive.cpp:12338:68: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=]
12338 | " Setting: %s unset for %d atoms in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 44 or more bytes (assuming 299) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12337:21: note: in expansion of macro 'PRINTF'
12337 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12360:57: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12360 | " Setting: %s unset in object \"%s\", state %d.\n",
| ^~
layer3/Executive.cpp:12360:25: note: directive argument in the range [1, 2147483647]
12360 | " Setting: %s unset in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 41 or more bytes (assuming 305) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12359:23: note: in expansion of macro 'PRINTF'
12359 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12354:57: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12354 | " Setting: %s unset in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 32 or more bytes (assuming 287) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12353:23: note: in expansion of macro 'PRINTF'
12353 | PRINTF
| ^~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer5/PyMOL.cpp -o build/temp.linux-armhf-3.9/layer5/PyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Executive.cpp: In function 'int ExecutiveGroup(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, int, int)':
layer3/Executive.cpp:2259:40: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
2259 | " Executive: adding '%s' to group '%s'.\n", rec.name, rec.group_name
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 36 and 546 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:2258:17: note: in expansion of macro 'PRINTFB'
2258 | PRINTFB(G, FB_Executive, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp: In function 'pymol::Result<std::vector<DiscardedRec> > ExecutiveSetName(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, bool)':
layer3/Executive.cpp:3523:41: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 222 [-Wformat-truncation=]
3523 | " Warning: Invalid characters in '%s' have been replaced or stripped\n",
| ^~
3524 | name ENDFB(G);
| ~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 67 and 322 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:3522:5: note: in expansion of macro 'PRINTFB'
3522 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)':
layer3/Executive.cpp:5070:57: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=]
5070 | " Executive: skipping unrecognized object \"%s\" of type %d.\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 56 and 321 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5069:11: note: in expansion of macro 'PRINTFB'
5069 | PRINTFB(G, FB_Executive, FB_Errors)
| ^~~~~~~
layer3/Executive.cpp:5095:58: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=]
5095 | "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G);
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 49 and 304 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5094:9: note: in expansion of macro 'PRINTFB'
5094 | PRINTFB(G, FB_Executive, FB_Errors)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Selector.cpp -o build/temp.linux-armhf-3.9/layer3/Selector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer5/TestPyMOL.cpp -o build/temp.linux-armhf-3.9/layer5/TestPyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Selector.cpp: In function 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)':
layer3/Selector.cpp:1722:70: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=]
1722 | " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n",
| ^~
In file included from /usr/include/stdio.h:866,
from /usr/include/c++/11/cstdio:42,
from /usr/include/c++/11/ext/string_conversions.h:43,
from /usr/include/c++/11/bits/basic_string.h:6606,
from /usr/include/c++/11/string:55,
from layer3/Selector.cpp:20:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 59 and 324 bytes into a destination of size 255
70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
71 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/build/generated/ShaderText.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-armhf-3.9/layer0/Block.o build/temp.linux-armhf-3.9/layer0/CarveHelper.o build/temp.linux-armhf-3.9/layer0/ContourSurf.o build/temp.linux-armhf-3.9/layer0/Crystal.o build/temp.linux-armhf-3.9/layer0/Deferred.o build/temp.linux-armhf-3.9/layer0/Err.o build/temp.linux-armhf-3.9/layer0/Feedback.o build/temp.linux-armhf-3.9/layer0/Field.o build/temp.linux-armhf-3.9/layer0/File.o build/temp.linux-armhf-3.9/layer0/GenericBuffer.o build/temp.linux-armhf-3.9/layer0/GraphicsUtil.o build/temp.linux-armhf-3.9/layer0/Isosurf.o build/temp.linux-armhf-3.9/layer0/Map.o build/temp.linux-armhf-3.9/layer0/Match.o build/temp.linux-armhf-3.9/layer0/Matrix.o build/temp.linux-armhf-3.9/layer0/MemoryDebug.o build/temp.linux-armhf-3.9/layer0/MemoryUsage.o build/temp.linux-armhf-3.9/layer0/MyPNG.o build/temp.linux-armhf-3.9/layer0/Parse.o build/temp.linux-armhf-3.9/layer0/Pixmap.o build/temp.linux-armhf-3.9/layer0/PostProcess.o build/temp.linux-armhf-3.9/layer0/ShaderMgr.o build/temp.linux-armhf-3.9/layer0/ShaderPrg.o build/temp.linux-armhf-3.9/layer0/Sphere.o build/temp.linux-armhf-3.9/layer0/Tetsurf.o build/temp.linux-armhf-3.9/layer0/Texture.o build/temp.linux-armhf-3.9/layer0/Tracker.o build/temp.linux-armhf-3.9/layer0/Triangle.o build/temp.linux-armhf-3.9/layer0/Util.o build/temp.linux-armhf-3.9/layer0/Util2.o build/temp.linux-armhf-3.9/layer0/Vector.o build/temp.linux-armhf-3.9/layer0/Word.o build/temp.linux-armhf-3.9/layer0/ccealignmodule.o build/temp.linux-armhf-3.9/layer0/marching_cubes.o build/temp.linux-armhf-3.9/layer0/os_gl.o build/temp.linux-armhf-3.9/layer1/Basis.o build/temp.linux-armhf-3.9/layer1/ButMode.o build/temp.linux-armhf-3.9/layer1/CGO.o build/temp.linux-armhf-3.9/layer1/COLLADA.o build/temp.linux-armhf-3.9/layer1/Character.o build/temp.linux-armhf-3.9/layer1/Color.o build/temp.linux-armhf-3.9/layer1/Control.o build/temp.linux-armhf-3.9/layer1/Extrude.o build/temp.linux-armhf-3.9/layer1/Font.o build/temp.linux-armhf-3.9/layer1/FontGLUT.o build/temp.linux-armhf-3.9/layer1/FontGLUT8x13.o build/temp.linux-armhf-3.9/layer1/FontGLUT9x15.o build/temp.linux-armhf-3.9/layer1/FontGLUTHel10.o build/temp.linux-armhf-3.9/layer1/FontGLUTHel12.o build/temp.linux-armhf-3.9/layer1/FontGLUTHel18.o build/temp.linux-armhf-3.9/layer1/FontType.o build/temp.linux-armhf-3.9/layer1/Movie.o build/temp.linux-armhf-3.9/layer1/Ortho.o build/temp.linux-armhf-3.9/layer1/P.o build/temp.linux-armhf-3.9/layer1/PConv.o build/temp.linux-armhf-3.9/layer1/Picking.o build/temp.linux-armhf-3.9/layer1/Pop.o build/temp.linux-armhf-3.9/layer1/PyMOLObject.o build/temp.linux-armhf-3.9/layer1/Ray.o build/temp.linux-armhf-3.9/layer1/Rep.o build/temp.linux-armhf-3.9/layer1/Scene.o build/temp.linux-armhf-3.9/layer1/SceneMouse.o build/temp.linux-armhf-3.9/layer1/ScenePicking.o build/temp.linux-armhf-3.9/layer1/SceneRay.o build/temp.linux-armhf-3.9/layer1/SceneRender.o build/temp.linux-armhf-3.9/layer1/ScrollBar.o build/temp.linux-armhf-3.9/layer1/Seq.o build/temp.linux-armhf-3.9/layer1/Setting.o build/temp.linux-armhf-3.9/layer1/Shaker.o build/temp.linux-armhf-3.9/layer1/SymOp.o build/temp.linux-armhf-3.9/layer1/SymOpPConv.o build/temp.linux-armhf-3.9/layer1/SymOpTools.o build/temp.linux-armhf-3.9/layer1/Symmetry.o build/temp.linux-armhf-3.9/layer1/Text.o build/temp.linux-armhf-3.9/layer1/TypeFace.o build/temp.linux-armhf-3.9/layer1/View.o build/temp.linux-armhf-3.9/layer1/Wizard.o build/temp.linux-armhf-3.9/layer2/AssemblyHelpers.o build/temp.linux-armhf-3.9/layer2/AtomInfo.o build/temp.linux-armhf-3.9/layer2/AtomInfoHistory.o build/temp.linux-armhf-3.9/layer2/BondTypeHistory.o build/temp.linux-armhf-3.9/layer2/CifFile.o build/temp.linux-armhf-3.9/layer2/CifMoleculeReader.o build/temp.linux-armhf-3.9/layer2/CoordSet.o build/temp.linux-armhf-3.9/layer2/DistSet.o build/temp.linux-armhf-3.9/layer2/GadgetSet.o build/temp.linux-armhf-3.9/layer2/HydrogenAdder.o build/temp.linux-armhf-3.9/layer2/MmodTyping.o build/temp.linux-armhf-3.9/layer2/MmtfMoleculeReader.o build/temp.linux-armhf-3.9/layer2/Mol2Typing.o build/temp.linux-armhf-3.9/layer2/MolV3000.o build/temp.linux-armhf-3.9/layer2/ObjectAlignment.o build/temp.linux-armhf-3.9/layer2/ObjectCGO.o build/temp.linux-armhf-3.9/layer2/ObjectCallback.o build/temp.linux-armhf-3.9/layer2/ObjectDist.o build/temp.linux-armhf-3.9/layer2/ObjectGadget.o build/temp.linux-armhf-3.9/layer2/ObjectGadgetRamp.o build/temp.linux-armhf-3.9/layer2/ObjectGroup.o build/temp.linux-armhf-3.9/layer2/ObjectMap.o build/temp.linux-armhf-3.9/layer2/ObjectMesh.o build/temp.linux-armhf-3.9/layer2/ObjectMolecule.o build/temp.linux-armhf-3.9/layer2/ObjectMolecule2.o build/temp.linux-armhf-3.9/layer2/ObjectMolecule3.o build/temp.linux-armhf-3.9/layer2/ObjectSlice.o build/temp.linux-armhf-3.9/layer2/ObjectSurface.o build/temp.linux-armhf-3.9/layer2/ObjectVolume.o build/temp.linux-armhf-3.9/layer2/RepAngle.o build/temp.linux-armhf-3.9/layer2/RepCartoon.o build/temp.linux-armhf-3.9/layer2/RepCylBond.o build/temp.linux-armhf-3.9/layer2/RepDihedral.o build/temp.linux-armhf-3.9/layer2/RepDistDash.o build/temp.linux-armhf-3.9/layer2/RepDistLabel.o build/temp.linux-armhf-3.9/layer2/RepDot.o build/temp.linux-armhf-3.9/layer2/RepEllipsoid.o build/temp.linux-armhf-3.9/layer2/RepLabel.o build/temp.linux-armhf-3.9/layer2/RepMesh.o build/temp.linux-armhf-3.9/layer2/RepNonbonded.o build/temp.linux-armhf-3.9/layer2/RepNonbondedSphere.o build/temp.linux-armhf-3.9/layer2/RepRibbon.o build/temp.linux-armhf-3.9/layer2/RepSphere.o build/temp.linux-armhf-3.9/layer2/RepSphereGenerate.o build/temp.linux-armhf-3.9/layer2/RepSphereImmediate.o build/temp.linux-armhf-3.9/layer2/RepSurface.o build/temp.linux-armhf-3.9/layer2/RepWireBond.o build/temp.linux-armhf-3.9/layer2/Sculpt.o build/temp.linux-armhf-3.9/layer2/SculptCache.o build/temp.linux-armhf-3.9/layer2/SideChainHelper.o build/temp.linux-armhf-3.9/layer2/VFont.o build/temp.linux-armhf-3.9/layer3/AtomIterators.o build/temp.linux-armhf-3.9/layer3/CifDataValueFormatter.o build/temp.linux-armhf-3.9/layer3/Editor.o build/temp.linux-armhf-3.9/layer3/Executive.o build/temp.linux-armhf-3.9/layer3/ExecutivePython.o build/temp.linux-armhf-3.9/layer3/MaeExportHelpers.o build/temp.linux-armhf-3.9/layer3/MoleculeExporter.o build/temp.linux-armhf-3.9/layer3/MovieScene.o build/temp.linux-armhf-3.9/layer3/PlugIOManager.o build/temp.linux-armhf-3.9/layer3/RingFinder.o build/temp.linux-armhf-3.9/layer3/Seeker.o build/temp.linux-armhf-3.9/layer3/Selector.o build/temp.linux-armhf-3.9/layer3/SelectorTmp.o build/temp.linux-armhf-3.9/layer3/SpecRec.o build/temp.linux-armhf-3.9/layer3/SpecRecSpecial.o build/temp.linux-armhf-3.9/layer4/Cmd.o build/temp.linux-armhf-3.9/layer4/Menu.o build/temp.linux-armhf-3.9/layer4/PopUp.o build/temp.linux-armhf-3.9/layer5/PyMOL.o build/temp.linux-armhf-3.9/layer5/TestPyMOL.o build/temp.linux-armhf-3.9/layer5/main.o build/temp.linux-armhf-3.9/ov/src/OVContext.o build/temp.linux-armhf-3.9/ov/src/OVHeap.o build/temp.linux-armhf-3.9/ov/src/OVHeapArray.o build/temp.linux-armhf-3.9/ov/src/OVLexicon.o build/temp.linux-armhf-3.9/ov/src/OVOneToAny.o build/temp.linux-armhf-3.9/ov/src/OVOneToOne.o build/temp.linux-armhf-3.9/ov/src/OVRandom.o build/temp.linux-armhf-3.9/ov/src/ov_utility.o -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -o /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/_cmd.cpython-39-arm-linux-gnueabihf.so -fopenmp
building 'chempy.champ._champ' extension
creating build/temp.linux-armhf-3.9/contrib/champ
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/champ.c -o build/temp.linux-armhf-3.9/contrib/champ/champ.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/champ_module.c -o build/temp.linux-armhf-3.9/contrib/champ/champ_module.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/chiral.c -o build/temp.linux-armhf-3.9/contrib/champ/chiral.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/err2.c -o build/temp.linux-armhf-3.9/contrib/champ/err2.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/list.c -o build/temp.linux-armhf-3.9/contrib/champ/list.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/feedback2.c -o build/temp.linux-armhf-3.9/contrib/champ/feedback2.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/os_memory.c -o build/temp.linux-armhf-3.9/contrib/champ/os_memory.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/sort.c -o build/temp.linux-armhf-3.9/contrib/champ/sort.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/strblock.c -o build/temp.linux-armhf-3.9/contrib/champ/strblock.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/vla.c -o build/temp.linux-armhf-3.9/contrib/champ/vla.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/contrib/champ/champ.o build/temp.linux-armhf-3.9/contrib/champ/champ_module.o build/temp.linux-armhf-3.9/contrib/champ/chiral.o build/temp.linux-armhf-3.9/contrib/champ/err2.o build/temp.linux-armhf-3.9/contrib/champ/feedback2.o build/temp.linux-armhf-3.9/contrib/champ/list.o build/temp.linux-armhf-3.9/contrib/champ/os_memory.o build/temp.linux-armhf-3.9/contrib/champ/sort.o build/temp.linux-armhf-3.9/contrib/champ/strblock.o build/temp.linux-armhf-3.9/contrib/champ/vla.o -o /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/_champ.cpython-39-arm-linux-gnueabihf.so
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/pymol-2.5.0+dfsg'
echo "FIXME: Test ends up with: AttributeError: module 'pymol' has no attribute 'start_pymol'"
FIXME: Test ends up with: AttributeError: module 'pymol' has no attribute 'start_pymol'
echo "Unfortunately upstream has removed the script that was used for testing from upstream source"
Unfortunately upstream has removed the script that was used for testing from upstream source
make[1]: Leaving directory '/<<BUILDDIR>>/pymol-2.5.0+dfsg'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:237: /usr/bin/python3 setup.py install --root /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol
running install
running build
running build_py
running build_ext
running install_lib
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/arc.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bond_amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bond_mmff.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bonds.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/brick.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/cc1.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/charge.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/cif.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/cpv.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/dictdb.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/gamess1.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/gms.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/hetatm.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/io.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/lst.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mae.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/map.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mass.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmd.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/models.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mol.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mol2.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/neighbor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/pdb.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/pkl.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/place.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein_amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein_amber99.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein_mmff.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein_residues.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/sdf.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/solvate.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/water_amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/water_residues.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/xyz.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/commands.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/realtime.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/state.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/util.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/amber99.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/assign.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/formal_charges.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/_champ.cpython-39-arm-linux-gnueabihf.so -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fast
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fast/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fast
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fragments
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fragments/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fragments
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf/io.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/keyword.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/realtime.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/state.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/TextEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/advanced_settings_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/builder.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/file_dialogs.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/keymapping.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/mimic_pmg_tk.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/mimic_tk.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/properties_dialog.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/pymol_gl_widget.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/pymol_qt_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/shortcut_menu_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/volume.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/askpartial.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/change_confirm.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/colors.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/create_shortcut.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/fetch.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/help_shortcut.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_aln.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_mae.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_map.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_mtz.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_traj.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/movieexport.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/pluginitem.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/pluginmanager.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/png.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/props.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/render.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/save_molecule.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/save_object.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/shortcut_menu.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/pml.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/pmlparser.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/python.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/ColorEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/Demo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/PMGApp.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/PyMOLMapLoad.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/SetEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/Setting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/TextEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/volume.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/demo
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/demo/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/demo
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal/ModalWindow.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal/builder.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/startup
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/startup
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/__main__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/api.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/callback.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/cgo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/checking.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/cmd.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/colorprinting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/colorramping.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/commanding.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/completing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/computing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/constants.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/constants_palette.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/controlling.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/creating.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/diagnosing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/editing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/editor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/experimenting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/exporting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/externing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/feedingback.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/fitting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/headering.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/helping.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/importing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/internal.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/invocation.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/keyboard.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/keywords.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/lazyio.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/locking.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/menu.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/monitoring.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/morphing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/movie.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/moving.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/mpeg_encode.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/parser.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/parsing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/preset.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/pymolhttpd.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/querying.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/rpc.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/save_shortcut.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/selecting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/selector.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/seqalign.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/setting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/shortcut.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/shortcut_dict.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/shortcut_manager.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/util.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/vfont.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/viewing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizarding.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/xray.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/xwin.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/povray.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt/utils.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/installation.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/legacysupport.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/managergui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/managergui_qt.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/repository.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/stereochemistry
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/stereochemistry/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/stereochemistry
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/annotation.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/appearance.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/benchmark.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/box.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/charge.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/cleanup.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/command.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/demo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/density.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/distance.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/dragging.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/filter.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/label.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/measurement.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/message.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/mutagenesis.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/nucmutagenesis.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/openvr.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/pair_fit.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/pseudoatom.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/renaming.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/sculpting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/security.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/stereodemo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/toggle.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/_cmd.cpython-39-arm-linux-gnueabihf.so -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2/cmd2.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/arc.py to arc.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bond_amber.py to bond_amber.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bond_mmff.py to bond_mmff.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bonds.py to bonds.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/brick.py to brick.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/cc1.py to cc1.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/charge.py to charge.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/cif.py to cif.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/cpv.py to cpv.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/dictdb.py to dictdb.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/gamess1.py to gamess1.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/gms.py to gms.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/hetatm.py to hetatm.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/io.py to io.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/lst.py to lst.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mae.py to mae.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/map.py to map.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mass.py to mass.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmd.py to mmd.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/models.py to models.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mol.py to mol.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mol2.py to mol2.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/neighbor.py to neighbor.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/pdb.py to pdb.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/pkl.py to pkl.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/place.py to place.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein.py to protein.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_amber.py to protein_amber.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_amber99.py to protein_amber99.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_mmff.py to protein_mmff.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_residues.py to protein_residues.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/sdf.py to sdf.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/solvate.py to solvate.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/water_amber.py to water_amber.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/water_residues.py to water_residues.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/xyz.py to xyz.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/commands.py to commands.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/realtime.py to realtime.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/state.py to state.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/util.py to util.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/amber99.py to amber99.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/assign.py to assign.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/formal_charges.py to formal_charges.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fast/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fragments/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf/io.py to io.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/amber.py to amber.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/keyword.py to keyword.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/realtime.py to realtime.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/state.py to state.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/TextEditor.py to TextEditor.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/builder.py to builder.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/keymapping.py to keymapping.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/mimic_tk.py to mimic_tk.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/shortcut_menu_gui.py to shortcut_menu_gui.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/volume.py to volume.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax/pml.py to pml.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax/pmlparser.py to pmlparser.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax/python.py to python.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/ColorEditor.py to ColorEditor.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/Demo.py to Demo.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/PMGApp.py to PMGApp.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/SetEditor.py to SetEditor.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/Setting.py to Setting.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/TextEditor.py to TextEditor.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/volume.py to volume.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal/builder.py to builder.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/startup/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/__main__.py to __main__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/_gui.py to _gui.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/api.py to api.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/callback.py to callback.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/cgo.py to cgo.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/checking.py to checking.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/cmd.py to cmd.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/colorprinting.py to colorprinting.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/colorramping.py to colorramping.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/commanding.py to commanding.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/completing.py to completing.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/computing.py to computing.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/constants.py to constants.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/constants_palette.py to constants_palette.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/controlling.py to controlling.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/creating.py to creating.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/diagnosing.py to diagnosing.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/editing.py to editing.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/editor.py to editor.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/experimenting.py to experimenting.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/exporting.py to exporting.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/externing.py to externing.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/feedingback.py to feedingback.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/fitting.py to fitting.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/gui.py to gui.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/headering.py to headering.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/helping.py to helping.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/importing.py to importing.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/internal.py to internal.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/invocation.py to invocation.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/keyboard.py to keyboard.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/keywords.py to keywords.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/lazyio.py to lazyio.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/locking.py to locking.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/menu.py to menu.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/monitoring.py to monitoring.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/morphing.py to morphing.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/movie.py to movie.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/moving.py to moving.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/mpeg_encode.py to mpeg_encode.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/parser.py to parser.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/parsing.py to parsing.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/preset.py to preset.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/pymolhttpd.py to pymolhttpd.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/querying.py to querying.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/rpc.py to rpc.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/save_shortcut.py to save_shortcut.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/selecting.py to selecting.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/selector.py to selector.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/seqalign.py to seqalign.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/setting.py to setting.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/shortcut.py to shortcut.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/shortcut_dict.py to shortcut_dict.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/shortcut_manager.py to shortcut_manager.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/util.py to util.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/vfont.py to vfont.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/viewing.py to viewing.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizarding.py to wizarding.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/xray.py to xray.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/xwin.py to xwin.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/povray.py to povray.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt/utils.py to utils.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/installation.py to installation.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/legacysupport.py to legacysupport.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/managergui.py to managergui.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/managergui_qt.py to managergui_qt.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/repository.py to repository.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/stereochemistry/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/annotation.py to annotation.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/appearance.py to appearance.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/benchmark.py to benchmark.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/box.py to box.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/charge.py to charge.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/cleanup.py to cleanup.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/command.py to command.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/demo.py to demo.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/density.py to density.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/distance.py to distance.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/dragging.py to dragging.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/filter.py to filter.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/label.py to label.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/measurement.py to measurement.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/message.py to message.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/mutagenesis.py to mutagenesis.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/openvr.py to openvr.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/pair_fit.py to pair_fit.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/pseudoatom.py to pseudoatom.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/renaming.py to renaming.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/sculpting.py to sculpting.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/security.py to security.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/stereodemo.py to stereodemo.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/toggle.py to toggle.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2/cmd2.py to cmd2.cpython-39.pyc
running install_egg_info
Writing /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol-2.5.0.egg-info
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/bin
debian/rules override_dh_install-arch
make[1]: Entering directory '/<<BUILDDIR>>/pymol-2.5.0+dfsg'
dh_numpy3
dh_install
rm -rf debian/python*pymol/usr/bin
make[1]: Leaving directory '/<<BUILDDIR>>/pymol-2.5.0+dfsg'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installexamples -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
debian/rules override_dh_compress
make[1]: Entering directory '/<<BUILDDIR>>/pymol-2.5.0+dfsg'
dh_compress -Xpdb
make[1]: Leaving directory '/<<BUILDDIR>>/pymol-2.5.0+dfsg'
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dwz: debian/python3-pymol/usr/lib/python3/dist-packages/pymol/_cmd.cpython-39-arm-linux-gnueabihf.so: DWARF compression not beneficial - old size 25489367 new size 25642613
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pymol-dbgsym' in '../python3-pymol-dbgsym_2.5.0+dfsg-1_armhf.deb'.
dpkg-deb: building package 'python3-pymol' in '../python3-pymol_2.5.0+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../pymol_2.5.0+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-12-21T06:17:37Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
pymol_2.5.0+dfsg-1_armhf.changes:
---------------------------------
Format: 1.8
Date: Wed, 15 Dec 2021 16:51:43 +0100
Source: pymol
Binary: python3-pymol python3-pymol-dbgsym
Architecture: armhf
Version: 2.5.0+dfsg-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
python3-pymol - Molecular Graphics System (Python 3 modules)
Closes: 929700
Changes:
pymol (2.5.0+dfsg-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* Standards-Version: 4.6.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Remove trailing whitespace in debian/copyright (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* No tab in license text (routine-update)
* Use secure URI in Homepage field.
* Remove obsolete field Name from debian/upstream/metadata (already present in
machine-readable debian/copyright).
* Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP.
* Apply multi-arch hints.
+ pymol-data: Add Multi-Arch: foreign.
* Replace imp by importlib in wrapper script
Closes: #929700
* Deactivate debian/patches/02_test-suite.patch since it is unused
* There is no need to recreate debian/pymol.launch per package build time
since we now stick to Python3
* Skip test importing.py
* Sort testscript and print command before execution to simplify debugging
of autopkgtest
* Do not try to run upstream build-time testscript which was removed upstream
(neither at build time nor in autopkgtest)
* Exclude test /usr/share/pymol/examples/devel/importing.py which has some
issue for the moment.
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Files:
dbeb5b72f88218e19da2471f00d51729 11903 science optional pymol_2.5.0+dfsg-1_armhf.buildinfo
1ecf00e95d79901e1c3c280b7a43af63 17145524 debug optional python3-pymol-dbgsym_2.5.0+dfsg-1_armhf.deb
c3f0b75c2c57a4010446707053f2cb7c 3294524 python optional python3-pymol_2.5.0+dfsg-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-pymol-dbgsym_2.5.0+dfsg-1_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 17145524 bytes: control archive=652 bytes.
421 bytes, 12 lines control
305 bytes, 3 lines md5sums
Package: python3-pymol-dbgsym
Source: pymol
Version: 2.5.0+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 17270
Depends: python3-pymol (= 2.5.0+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for python3-pymol
Build-Ids: 15bddff1fb238ee3c41e3753ed25171055a13404 8b33c9efa3accc02b7a878b627a74f482d839c7a
drwxr-xr-x root/root 0 2021-12-15 15:51 ./
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/debug/.build-id/15/
-rw-r--r-- root/root 100504 2021-12-15 15:51 ./usr/lib/debug/.build-id/15/bddff1fb238ee3c41e3753ed25171055a13404.debug
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/debug/.build-id/8b/
-rw-r--r-- root/root 17565240 2021-12-15 15:51 ./usr/lib/debug/.build-id/8b/33c9efa3accc02b7a878b627a74f482d839c7a.debug
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 3240 2021-12-15 15:51 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-pymol.debug
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/share/
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-12-15 15:51 ./usr/share/doc/python3-pymol-dbgsym -> python3-pymol
python3-pymol_2.5.0+dfsg-1_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 3294524 bytes: control archive=6788 bytes.
1314 bytes, 26 lines control
18281 bytes, 214 lines md5sums
263 bytes, 12 lines * postinst #!/bin/sh
412 bytes, 12 lines * prerm #!/bin/sh
Package: python3-pymol
Source: pymol
Version: 2.5.0+dfsg-1
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 11845
Depends: python3-numpy (>= 1:1.20.0), python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, python3-numpy-abi9, python3 (<< 3.10), python3 (>= 3.9~), python3:any, libc6 (>= 2.32), libfreetype6 (>= 2.2.1), libgcc-s1 (>= 3.5), libgl1, libglew2.2 (>= 2.2.0-4), libgomp1 (>= 4.9), libnetcdf19 (>= 3.6.1), libpng16-16 (>= 1.6.2-1), libstdc++6 (>= 11), libxml2 (>= 2.7.4), pymol-data (= 2.5.0+dfsg-1)
Section: python
Priority: optional
Homepage: https://www.pymol.org
Description: Molecular Graphics System (Python 3 modules)
PyMOL is a molecular graphics system targeted at medium to large
biomolecules like proteins. It can generate high-quality publication-ready
molecular graphics images and animations.
.
Features include:
* Visualization of molecules, molecular trajectories and surfaces
of crystallography data or orbitals
* Molecular builder and sculptor
* Internal raytracer and movie generator
* Fully extensible and scriptable via a Python interface
.
File formats PyMOL can read include PDB, XYZ, CIF, MDL Molfile, ChemDraw,
CCP4 maps, XPLOR maps and Gaussian cube maps.
.
This package contains the Python 3 modules.
drwxr-xr-x root/root 0 2021-12-15 15:51 ./
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drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/chempy/
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 297148
Build-Time: 326
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1122
Job: pymol_2.5.0+dfsg-1
Machine Architecture: armhf
Package: pymol
Package-Time: 1471
Source-Version: 2.5.0+dfsg-1
Space: 297148
Status: successful
Version: 2.5.0+dfsg-1
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Finished at 2021-12-21T06:17:37Z
Build needed 00:24:31, 297148k disk space