pymol →
2.5.0+dfsg-1+b1 →
armhf → 2022-04-20 16:29:39
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| pymol 2.5.0+dfsg-1+b1 (armhf) Wed, 20 Apr 2022 15:59:37 +0000 |
+==============================================================================+
Package: pymol
Version: 2.5.0+dfsg-1+b1
Source Version: 2.5.0+dfsg-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-342aa001-5b7e-44a8-9bef-a5e83be0410c' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.0 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.9 MB]
Fetched 26.8 MB in 10s (2768 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'pymol' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/debichem-team/pymol.git
Please use:
git clone https://salsa.debian.org/debichem-team/pymol.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 6957 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main pymol 2.5.0+dfsg-1 (dsc) [2293 B]
Get:2 http://172.17.4.1/private bookworm-staging/main pymol 2.5.0+dfsg-1 (tar) [6897 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main pymol 2.5.0+dfsg-1 (diff) [57.3 kB]
Fetched 6957 kB in 1s (8934 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pymol-ZRXdew/pymol-2.5.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pymol-ZRXdew' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-vHJZgq/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-vHJZgq/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-vHJZgq/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-vHJZgq/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-vHJZgq/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-vHJZgq/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-vHJZgq/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-vHJZgq/apt_archive ./ Packages [434 B]
Fetched 2110 B in 0s (8071 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 49 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-vHJZgq/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (67.5 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12608 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, freeglut3-dev, libfreetype6-dev, libglew-dev, libglm-dev, libnetcdf-dev, libpng-dev, python3-all, python3-all-dev, python3-numpy, python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, texlive-latex-base, libxml2-dev
Filtered Build-Depends: debhelper-compat (= 13), dh-python, freeglut3-dev, libfreetype6-dev, libglew-dev, libglm-dev, libnetcdf-dev, libpng-dev, python3-all, python3-all-dev, python3-numpy, python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, texlive-latex-base, libxml2-dev
dpkg-deb: building package 'sbuild-build-depends-pymol-dummy' in '/<<BUILDDIR>>/resolver-vHJZgq/apt_archive/sbuild-build-depends-pymol-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-pymol-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-vHJZgq/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-vHJZgq/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-vHJZgq/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-vHJZgq/apt_archive ./ Sources [589 B]
Get:5 copy:/<<BUILDDIR>>/resolver-vHJZgq/apt_archive ./ Packages [673 B]
Fetched 2595 B in 0s (12.8 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install pymol build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core fonts-lmodern freeglut3 freeglut3-dev
gcc-12-base gettext gettext-base groff-base hdf5-helpers icu-devtools
intltool-debian libaec-dev libaec0 libarchive-zip-perl libavahi-client3
libavahi-common-data libavahi-common3 libblas3 libbrotli-dev libbrotli1
libbsd0 libcairo2 libcups2 libcurl3-gnutls libcurl4 libcurl4-openssl-dev
libdbus-1-3 libdebhelper-perl libdouble-conversion3 libdrm-amdgpu1
libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-dev
libegl-mesa0 libegl1 libelf1 libevdev2 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfontconfig1 libfreetype-dev libfreetype6
libfreetype6-dev libgbm1 libgfortran5 libgl-dev libgl1 libgl1-mesa-dev
libgl1-mesa-dri libglapi-mesa libgles-dev libgles1 libgles2 libglew-dev
libglew2.2 libglib2.0-0 libglm-dev libglu1-mesa libglu1-mesa-dev
libglvnd-core-dev libglvnd-dev libglvnd0 libglx-dev libglx-mesa0 libglx0
libgraphite2-3 libgudev-1.0-0 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1
libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100
libhdf5-hl-fortran-100 libice-dev libice6 libicu-dev libicu67 libinput-bin
libinput10 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery
libjs-sphinxdoc libjs-underscore libkpathsea6 liblapack3 libllvm13
libmagic-mgc libmagic1 libmd0 libmd4c0 libmpdec3 libmtdev1 libnetcdf-dev
libnetcdf19 libnghttp2-14 libopengl-dev libopengl0 libpaper-utils libpaper1
libpcre2-16-0 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libptexenc1 libpthread-stubs0-dev libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal
libpython3.10-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
libpython3.9-stdlib libqt5core5a libqt5dbus5 libqt5designer5 libqt5gui5
libqt5help5 libqt5network5 libqt5opengl5 libqt5printsupport5 libqt5sql5
libqt5test5 libqt5widgets5 libqt5xml5 librtmp1 libsensors-config libsensors5
libsigsegv2 libsm-dev libsm6 libsmartcols1 libssh2-1 libssl-dev libstdc++6
libsub-override-perl libsynctex2 libsz2 libteckit0 libtexlua53 libtexluajit2
libtool libuchardet0 libvulkan1 libwacom-common libwacom9 libwayland-client0
libwayland-server0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev
libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4
libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0
libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1
libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1
libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3
libxi6 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxml2-dev libxmu6 libxpm4
libxrender1 libxshmfence1 libxt-dev libxt6 libxxf86vm1 libz3-4 libzstd1
libzzip-0-13 m4 man-db media-types po-debconf python3 python3-all
python3-all-dev python3-dev python3-distutils python3-lib2to3
python3-minimal python3-numpy python3-opengl python3-pkg-resources
python3-pyqt5 python3-pyqt5.qtopengl python3-pyqt5.sip python3.10
python3.10-dev python3.10-minimal python3.9 python3.9-dev python3.9-minimal
shared-mime-info t1utils tex-common texlive-base texlive-binaries
texlive-latex-base ucf x11-common x11proto-dev xdg-utils xkb-data
xorg-sgml-doctools xtrans-dev zlib1g zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build
python3-tomli python3-installer gettext-doc libasprintf-dev libgettextpo-dev
groff cups-common libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev
librtmp-dev libssh2-1-dev pkg-config freetype2-doc glew-utils libhdf5-doc
libice-doc icu-doc netcdf-bin netcdf-doc libthai0 qt5-image-formats-plugins
qtwayland5 lm-sensors libsm-doc libssl-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk libx11-doc libxcb-doc libxext-doc libxt-doc
m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk
python3-venv gfortran python-numpy-doc python3-pytest libgle3
python3-setuptools python3.10-venv python3.10-doc binfmt-support
python3.9-venv python3.9-doc ghostscript gv | postscript-viewer perl-tk xpdf
| pdf-viewer xzdec texlive-latex-base-doc
Recommended packages:
curl | wget | lynx ca-certificates dbus libarchive-cpio-perl libglib2.0-data
xdg-user-dirs javascript-common pkg-config libpng-tools publicsuffix
qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme libqt5sql5-sqlite
| libqt5sql5-mysql | libqt5sql5-odbc | libqt5sql5-psql | libqt5sql5-tds
| libqt5sql5-ibase libltdl-dev mesa-vulkan-drivers | vulkan-icd libwacom-bin
libmail-sendmail-perl lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core fonts-lmodern freeglut3 freeglut3-dev
gcc-12-base gettext gettext-base groff-base hdf5-helpers icu-devtools
intltool-debian libaec-dev libaec0 libarchive-zip-perl libavahi-client3
libavahi-common-data libavahi-common3 libblas3 libbrotli-dev libbrotli1
libbsd0 libcairo2 libcups2 libcurl3-gnutls libcurl4 libcurl4-openssl-dev
libdbus-1-3 libdebhelper-perl libdouble-conversion3 libdrm-amdgpu1
libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-dev
libegl-mesa0 libegl1 libelf1 libevdev2 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfontconfig1 libfreetype-dev libfreetype6
libfreetype6-dev libgbm1 libgfortran5 libgl-dev libgl1 libgl1-mesa-dev
libgl1-mesa-dri libglapi-mesa libgles-dev libgles1 libgles2 libglew-dev
libglew2.2 libglib2.0-0 libglm-dev libglu1-mesa libglu1-mesa-dev
libglvnd-core-dev libglvnd-dev libglvnd0 libglx-dev libglx-mesa0 libglx0
libgraphite2-3 libgudev-1.0-0 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1
libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100
libhdf5-hl-fortran-100 libice-dev libice6 libicu-dev libicu67 libinput-bin
libinput10 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery
libjs-sphinxdoc libjs-underscore libkpathsea6 liblapack3 libllvm13
libmagic-mgc libmagic1 libmd0 libmd4c0 libmpdec3 libmtdev1 libnetcdf-dev
libnetcdf19 libnghttp2-14 libopengl-dev libopengl0 libpaper-utils libpaper1
libpcre2-16-0 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libptexenc1 libpthread-stubs0-dev libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal
libpython3.10-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
libpython3.9-stdlib libqt5core5a libqt5dbus5 libqt5designer5 libqt5gui5
libqt5help5 libqt5network5 libqt5opengl5 libqt5printsupport5 libqt5sql5
libqt5test5 libqt5widgets5 libqt5xml5 librtmp1 libsensors-config libsensors5
libsigsegv2 libsm-dev libsm6 libssh2-1 libssl-dev libsub-override-perl
libsynctex2 libsz2 libteckit0 libtexlua53 libtexluajit2 libtool libuchardet0
libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-server0
libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7
libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0
libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0
libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1
libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1
libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxi6
libxkbcommon-x11-0 libxkbcommon0 libxml2 libxml2-dev libxmu6 libxpm4
libxrender1 libxshmfence1 libxt-dev libxt6 libxxf86vm1 libz3-4 libzzip-0-13
m4 man-db media-types po-debconf python3 python3-all python3-all-dev
python3-dev python3-distutils python3-lib2to3 python3-minimal python3-numpy
python3-opengl python3-pkg-resources python3-pyqt5 python3-pyqt5.qtopengl
python3-pyqt5.sip python3.10 python3.10-dev python3.10-minimal python3.9
python3.9-dev python3.9-minimal sbuild-build-depends-pymol-dummy
shared-mime-info t1utils tex-common texlive-base texlive-binaries
texlive-latex-base ucf x11-common x11proto-dev xdg-utils xkb-data
xorg-sgml-doctools xtrans-dev zlib1g-dev
The following packages will be upgraded:
libsmartcols1 libstdc++6 libzstd1 zlib1g
4 upgraded, 256 newly installed, 0 to remove and 45 not upgraded.
Need to get 163 MB of archives.
After this operation, 635 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-vHJZgq/apt_archive ./ sbuild-build-depends-pymol-dummy 0.invalid.0 [952 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-minimal armhf 3.10.4-1 [811 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.8-1 [84.1 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf zlib1g armhf 1:1.2.11.dfsg-4 [84.2 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.4-1 [1633 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.10.4-1 [38.6 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf media-types all 7.1.0 [33.2 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12-20220319-1+rpi1 [207 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 12-20220319-1+rpi1 [506 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.4-1 [1625 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.4-1 [536 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.10.4-1 [21.7 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.10.4-1 [38.1 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.12-1+rpi1 [794 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.12-1+rpi1 [1595 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf tex-common all 6.17 [53.6 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libsmartcols1 armhf 2.38-4 [149 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libzstd1 armhf 1.5.2+dfsg-1 [234 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38-4 [137 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.5-1 [32.9 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-1 [1362 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-6 [171 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-6 [510 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.7 [195 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-3 [526 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.13+dfsg-1 [593 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-6 [1214 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.7 [1070 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.12-1 [79.9 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.9.12-1 [146 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220403 [113 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.11.1+dfsg-1 [334 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.4 [281 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.4 [331 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.4 [416 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf fonts-lmodern all 2.005-1 [4540 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libglvnd0 armhf 1.4.0-1 [55.1 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.6-1 [109 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.7.5-1 [308 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.5-1 [706 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libdrm-common all 2.4.110-1+rpi1 [15.5 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libdrm2 armhf 2.4.110-1+rpi1 [40.7 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libglapi-mesa armhf 21.3.8-1+rpi1 [84.1 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libx11-xcb1 armhf 2:1.7.5-1 [203 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libxcb-dri2-0 armhf 1.14-3 [103 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libxcb-dri3-0 armhf 1.14-3 [102 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libxcb-glx0 armhf 1.14-3 [117 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libxcb-present0 armhf 1.14-3 [101 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libxcb-sync1 armhf 1.14-3 [104 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libxcb-xfixes0 armhf 1.14-3 [105 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libxfixes3 armhf 1:6.0.0-1 [21.0 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libxshmfence1 armhf 1.3-1 [8636 B]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.1 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libdrm-amdgpu1 armhf 2.4.110-1+rpi1 [28.1 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libdrm-nouveau2 armhf 2.4.110-1+rpi1 [25.6 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libdrm-radeon1 armhf 2.4.110-1+rpi1 [29.7 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libedit2 armhf 3.1-20210910-1 [81.2 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libz3-4 armhf 4.8.12-1 [5758 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libllvm13 armhf 1:13.0.1-3+rpi1+b1 [17.9 MB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libsensors-config all 1:3.6.0-7 [32.3 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libsensors5 armhf 1:3.6.0-7 [49.6 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libvulkan1 armhf 1.3.204.1-2 [91.6 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libgl1-mesa-dri armhf 21.3.8-1+rpi1 [6684 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libglx-mesa0 armhf 21.3.8-1+rpi1 [169 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libglx0 armhf 1.4.0-1 [26.3 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libgl1 armhf 1.4.0-1 [105 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libxi6 armhf 2:1.8-1 [78.1 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf freeglut3 armhf 2.8.1-6 [112 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf x11proto-dev all 2021.5-1 [599 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libxau-dev armhf 1:1.0.9-1 [22.3 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf xtrans-dev all 1.4.0-1 [98.7 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libxcb1-dev armhf 1.14-3 [171 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libx11-dev armhf 2:1.7.5-1 [779 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libglx-dev armhf 1.4.0-1 [16.6 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libgl-dev armhf 1.4.0-1 [101 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libglvnd-core-dev armhf 1.4.0-1 [14.2 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libwayland-server0 armhf 1.20.0-1 [28.8 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libgbm1 armhf 21.3.8-1+rpi1 [74.4 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libwayland-client0 armhf 1.20.0-1 [23.1 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libegl-mesa0 armhf 21.3.8-1+rpi1 [126 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libegl1 armhf 1.4.0-1 [29.8 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libegl-dev armhf 1.4.0-1 [20.2 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libgles1 armhf 1.4.0-1 [13.5 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libgles2 armhf 1.4.0-1 [20.3 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libgles-dev armhf 1.4.0-1 [50.7 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libopengl0 armhf 1.4.0-1 [39.1 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libopengl-dev armhf 1.4.0-1 [6216 B]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libglvnd-dev armhf 1.4.0-1 [5976 B]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libgl1-mesa-dev armhf 21.3.8-1+rpi1 [54.6 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libglu1-mesa armhf 9.0.2-1 [130 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libglu1-mesa-dev armhf 9.0.2-1 [170 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libxext-dev armhf 2:1.3.4-1 [102 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.1-1 [159 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libice-dev armhf 2:1.0.10-1 [58.7 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libsm-dev armhf 2:1.2.3-1 [35.4 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libxt-dev armhf 1:1.2.1-1 [371 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf freeglut3-dev armhf 2.8.1-6 [165 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf hdf5-helpers armhf 1.10.7+repack-4+rpi1 [42.9 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 67.1-7 [172 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libaec0 armhf 1.0.6-1 [19.3 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libsz2 armhf 1.0.6-1 [7452 B]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libaec-dev armhf 1.0.6-1 [17.6 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf libavahi-common-data armhf 0.8-5 [123 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libavahi-common3 armhf 0.8-5 [55.3 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libdbus-1-3 armhf 1.14.0-1 [210 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libavahi-client3 armhf 0.8-5 [57.9 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.0-2 [109 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libbrotli-dev armhf 1.0.9-2+b2 [271 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.14-3 [110 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-5 [602 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf libcups2 armhf 2.4.1op1-2 [310 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3 [161 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.82.0-2 [313 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.82.0-2 [317 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf libcurl4-openssl-dev armhf 7.82.0-2 [393 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf libdouble-conversion3 armhf 3.1.7-4 [38.4 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf libevdev2 armhf 1.12.1+dfsg-1 [28.0 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.8-1 [137 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4 [183 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.37-3 [277 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libfreetype-dev armhf 2.11.1+dfsg-1 [493 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6-dev armhf 2.11.1+dfsg-1 [54.8 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12-20220319-1+rpi1 [238 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf libglew2.2 armhf 2.2.0-4 [158 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf libglew-dev armhf 2.2.0-4 [251 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.72.0-1 [1229 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf libglm-dev all 0.9.9.8+ds-2 [183 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf libgudev-1.0-0 armhf 237-2 [13.2 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-103-1 armhf 1.10.7+repack-4+rpi1 [1246 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.7+repack-4+rpi1 [133 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-fortran-102 armhf 1.10.7+repack-4+rpi1 [97.0 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-100 armhf 1.10.7+repack-4+rpi1 [82.1 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.7+repack-4+rpi1 [53.9 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.7+repack-4+rpi1 [40.1 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.2-1 [261 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.2-1 [74.7 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf libssl-dev armhf 1.1.1n-1 [1576 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-dev armhf 1.10.7+repack-4+rpi1 [2211 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 67.1-7 [9228 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf libwacom-common all 2.2.0-1 [55.2 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf libwacom9 armhf 2.2.0-1 [19.5 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf libinput-bin armhf 1.20.0-1 [24.6 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf libmtdev1 armhf 1.1.6-1 [22.0 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf libinput10 armhf 1.20.0-1 [108 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [316 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.2~dfsg-2 [116 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.5.0-3 [142 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf libkpathsea6 armhf 2021.20210626.59705-1 [164 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.0-2 [1590 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf libmd4c0 armhf 0.4.8-1 [39.4 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf libnetcdf19 armhf 1:4.8.1-1 [397 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf libnetcdf-dev armhf 1:4.8.1-1 [99.5 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.39-4 [202 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf libptexenc1 armhf 2021.20210626.59705-1 [61.5 kB]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10 armhf 3.10.4-1 [1454 kB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-dev armhf 3.10.4-1 [2984 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.10.4-1 [22.0 kB]
Get:205 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.12-1+rpi1 [1611 kB]
Get:206 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.12-1+rpi1 [1419 kB]
Get:207 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-dev armhf 3.9.12-1+rpi1 [3013 kB]
Get:208 http://172.17.4.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.10.4-1 [1072 B]
Get:209 http://172.17.4.1/private bookworm-staging/main armhf shared-mime-info armhf 2.1-2 [720 kB]
Get:210 http://172.17.4.1/private bookworm-staging/main armhf libqt5core5a armhf 5.15.2+dfsg-16+rpi1 [1527 kB]
Get:211 http://172.17.4.1/private bookworm-staging/main armhf libqt5dbus5 armhf 5.15.2+dfsg-16+rpi1 [213 kB]
Get:212 http://172.17.4.1/private bookworm-staging/main armhf libqt5network5 armhf 5.15.2+dfsg-16+rpi1 [598 kB]
Get:213 http://172.17.4.1/private bookworm-staging/main armhf libxcb-icccm4 armhf 0.4.1-1.1 [26.3 kB]
Get:214 http://172.17.4.1/private bookworm-staging/main armhf libxcb-util1 armhf 0.4.0-1 [22.1 kB]
Get:215 http://172.17.4.1/private bookworm-staging/main armhf libxcb-image0 armhf 0.4.0-2 [21.9 kB]
Get:216 http://172.17.4.1/private bookworm-staging/main armhf libxcb-keysyms1 armhf 0.4.0-1+b2 [15.9 kB]
Get:217 http://172.17.4.1/private bookworm-staging/main armhf libxcb-randr0 armhf 1.14-3 [112 kB]
Get:218 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render-util0 armhf 0.3.9-1+b1 [17.3 kB]
Get:219 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shape0 armhf 1.14-3 [102 kB]
Get:220 http://172.17.4.1/private bookworm-staging/main armhf libxcb-xinerama0 armhf 1.14-3 [101 kB]
Get:221 http://172.17.4.1/private bookworm-staging/main armhf libxcb-xinput0 armhf 1.14-3 [123 kB]
Get:222 http://172.17.4.1/private bookworm-staging/main armhf libxcb-xkb1 armhf 1.14-3 [122 kB]
Get:223 http://172.17.4.1/private bookworm-staging/main armhf xkb-data all 2.35.1-1 [764 kB]
Get:224 http://172.17.4.1/private bookworm-staging/main armhf libxkbcommon0 armhf 1.4.0-1 [95.6 kB]
Get:225 http://172.17.4.1/private bookworm-staging/main armhf libxkbcommon-x11-0 armhf 1.4.0-1 [15.8 kB]
Get:226 http://172.17.4.1/private bookworm-staging/main armhf libqt5gui5 armhf 5.15.2+dfsg-16+rpi1 [2559 kB]
Get:227 http://172.17.4.1/private bookworm-staging/main armhf libqt5widgets5 armhf 5.15.2+dfsg-16+rpi1 [2065 kB]
Get:228 http://172.17.4.1/private bookworm-staging/main armhf libqt5xml5 armhf 5.15.2+dfsg-16+rpi1 [137 kB]
Get:229 http://172.17.4.1/private bookworm-staging/main armhf libqt5designer5 armhf 5.15.2-5 [2617 kB]
Get:230 http://172.17.4.1/private bookworm-staging/main armhf libqt5sql5 armhf 5.15.2+dfsg-16+rpi1 [136 kB]
Get:231 http://172.17.4.1/private bookworm-staging/main armhf libqt5help5 armhf 5.15.2-5 [132 kB]
Get:232 http://172.17.4.1/private bookworm-staging/main armhf libqt5opengl5 armhf 5.15.2+dfsg-16+rpi1 [154 kB]
Get:233 http://172.17.4.1/private bookworm-staging/main armhf libqt5printsupport5 armhf 5.15.2+dfsg-16+rpi1 [211 kB]
Get:234 http://172.17.4.1/private bookworm-staging/main armhf libqt5test5 armhf 5.15.2+dfsg-16+rpi1 [157 kB]
Get:235 http://172.17.4.1/private bookworm-staging/main armhf libsynctex2 armhf 2021.20210626.59705-1 [67.4 kB]
Get:236 http://172.17.4.1/private bookworm-staging/main armhf libteckit0 armhf 2.5.11+ds1-1 [256 kB]
Get:237 http://172.17.4.1/private bookworm-staging/main armhf libtexlua53 armhf 2021.20210626.59705-1 [102 kB]
Get:238 http://172.17.4.1/private bookworm-staging/main armhf libtexluajit2 armhf 2021.20210626.59705-1 [208 kB]
Get:239 http://172.17.4.1/private bookworm-staging/main armhf libxmu6 armhf 2:1.1.3-3 [52.0 kB]
Get:240 http://172.17.4.1/private bookworm-staging/main armhf libxpm4 armhf 1:3.5.12-1 [43.6 kB]
Get:241 http://172.17.4.1/private bookworm-staging/main armhf libxaw7 armhf 2:1.0.14-1 [165 kB]
Get:242 http://172.17.4.1/private bookworm-staging/main armhf libxml2-dev armhf 2.9.13+dfsg-1 [657 kB]
Get:243 http://172.17.4.1/private bookworm-staging/main armhf libzzip-0-13 armhf 0.13.72+dfsg.1-1.1 [54.3 kB]
Get:244 http://172.17.4.1/private bookworm-staging/main armhf python3.9 armhf 3.9.12-1+rpi1 [492 kB]
Get:245 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.10.4-1 [1064 B]
Get:246 http://172.17.4.1/private bookworm-staging/main armhf python3.10-dev armhf 3.10.4-1 [508 kB]
Get:247 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.10.4-1 [25.4 kB]
Get:248 http://172.17.4.1/private bookworm-staging/main armhf python3.9-dev armhf 3.9.12-1+rpi1 [501 kB]
Get:249 http://172.17.4.1/private bookworm-staging/main armhf python3-all-dev armhf 3.10.4-1 [1076 B]
Get:250 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 59.6.0-1.2 [196 kB]
Get:251 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.21.5-1+b1 [5157 kB]
Get:252 http://172.17.4.1/private bookworm-staging/main armhf python3-opengl all 3.1.5+dfsg-1 [610 kB]
Get:253 http://172.17.4.1/private bookworm-staging/main armhf python3-pyqt5.sip armhf 12.9.1-1+b1 [51.7 kB]
Get:254 http://172.17.4.1/private bookworm-staging/main armhf python3-pyqt5 armhf 5.15.6+dfsg-1 [1959 kB]
Get:255 http://172.17.4.1/private bookworm-staging/main armhf python3-pyqt5.qtopengl armhf 5.15.6+dfsg-1 [139 kB]
Get:256 http://172.17.4.1/private bookworm-staging/main armhf t1utils armhf 1.41-4 [52.3 kB]
Get:257 http://172.17.4.1/private bookworm-staging/main armhf texlive-binaries armhf 2021.20210626.59705-1 [6847 kB]
Get:258 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:259 http://172.17.4.1/private bookworm-staging/main armhf texlive-base all 2021.20220204-1 [21.2 MB]
Get:260 http://172.17.4.1/private bookworm-staging/main armhf texlive-latex-base all 2021.20220204-1 [1160 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 163 MB in 18s (8799 kB/s)
Selecting previously unselected package libpython3.10-minimal:armhf.
(Reading database ... 12608 files and directories currently installed.)
Preparing to unpack .../libpython3.10-minimal_3.10.4-1_armhf.deb ...
Unpacking libpython3.10-minimal:armhf (3.10.4-1) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../libexpat1_2.4.8-1_armhf.deb ...
Unpacking libexpat1:armhf (2.4.8-1) ...
Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-4_armhf.deb ...
Unpacking zlib1g:armhf (1:1.2.11.dfsg-4) over (1:1.2.11.dfsg-2) ...
Setting up zlib1g:armhf (1:1.2.11.dfsg-4) ...
Selecting previously unselected package python3.10-minimal.
(Reading database ... 12902 files and directories currently installed.)
Preparing to unpack .../python3.10-minimal_3.10.4-1_armhf.deb ...
Unpacking python3.10-minimal (3.10.4-1) ...
Setting up libpython3.10-minimal:armhf (3.10.4-1) ...
Setting up libexpat1:armhf (2.4.8-1) ...
Setting up python3.10-minimal (3.10.4-1) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 12911 files and directories currently installed.)
Preparing to unpack .../python3-minimal_3.10.4-1_armhf.deb ...
Unpacking python3-minimal (3.10.4-1) ...
Selecting previously unselected package media-types.
Preparing to unpack .../media-types_7.1.0_all.deb ...
Unpacking media-types (7.1.0) ...
Selecting previously unselected package gcc-12-base:armhf.
Preparing to unpack .../gcc-12-base_12-20220319-1+rpi1_armhf.deb ...
Unpacking gcc-12-base:armhf (12-20220319-1+rpi1) ...
Setting up gcc-12-base:armhf (12-20220319-1+rpi1) ...
(Reading database ... 12943 files and directories currently installed.)
Preparing to unpack .../libstdc++6_12-20220319-1+rpi1_armhf.deb ...
Unpacking libstdc++6:armhf (12-20220319-1+rpi1) over (11.2.0-16+rpi1) ...
Setting up libstdc++6:armhf (12-20220319-1+rpi1) ...
Selecting previously unselected package libmpdec3:armhf.
(Reading database ... 12943 files and directories currently installed.)
Preparing to unpack .../libmpdec3_2.5.1-2+rpi1_armhf.deb ...
Unpacking libmpdec3:armhf (2.5.1-2+rpi1) ...
Selecting previously unselected package libpython3.10-stdlib:armhf.
Preparing to unpack .../libpython3.10-stdlib_3.10.4-1_armhf.deb ...
Unpacking libpython3.10-stdlib:armhf (3.10.4-1) ...
Selecting previously unselected package python3.10.
Preparing to unpack .../python3.10_3.10.4-1_armhf.deb ...
Unpacking python3.10 (3.10.4-1) ...
Selecting previously unselected package libpython3-stdlib:armhf.
Preparing to unpack .../libpython3-stdlib_3.10.4-1_armhf.deb ...
Unpacking libpython3-stdlib:armhf (3.10.4-1) ...
Setting up python3-minimal (3.10.4-1) ...
Selecting previously unselected package python3.
(Reading database ... 13318 files and directories currently installed.)
Preparing to unpack .../0-python3_3.10.4-1_armhf.deb ...
Unpacking python3 (3.10.4-1) ...
Selecting previously unselected package libpython3.9-minimal:armhf.
Preparing to unpack .../1-libpython3.9-minimal_3.9.12-1+rpi1_armhf.deb ...
Unpacking libpython3.9-minimal:armhf (3.9.12-1+rpi1) ...
Selecting previously unselected package python3.9-minimal.
Preparing to unpack .../2-python3.9-minimal_3.9.12-1+rpi1_armhf.deb ...
Unpacking python3.9-minimal (3.9.12-1+rpi1) ...
Selecting previously unselected package ucf.
Preparing to unpack .../3-ucf_3.0043_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0043) ...
Selecting previously unselected package tex-common.
Preparing to unpack .../4-tex-common_6.17_all.deb ...
Unpacking tex-common (6.17) ...
Preparing to unpack .../5-libsmartcols1_2.38-4_armhf.deb ...
Unpacking libsmartcols1:armhf (2.38-4) over (2.37.3-1) ...
Setting up libsmartcols1:armhf (2.38-4) ...
(Reading database ... 13725 files and directories currently installed.)
Preparing to unpack .../libzstd1_1.5.2+dfsg-1_armhf.deb ...
Unpacking libzstd1:armhf (1.5.2+dfsg-1) over (1.4.9+dfsg-1+rpi1) ...
Setting up libzstd1:armhf (1.5.2+dfsg-1) ...
Selecting previously unselected package libuchardet0:armhf.
(Reading database ... 13725 files and directories currently installed.)
Preparing to unpack .../000-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../001-groff-base_1.22.4-8_armhf.deb ...
Unpacking groff-base (1.22.4-8) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../002-bsdextrautils_2.38-4_armhf.deb ...
Unpacking bsdextrautils (2.38-4) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../003-libpipeline1_1.5.5-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.5-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../004-man-db_2.10.2-1_armhf.deb ...
Unpacking man-db (2.10.2-1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../005-libmagic-mgc_1%3a5.41-2_armhf.deb ...
Unpacking libmagic-mgc (1:5.41-2) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../006-libmagic1_1%3a5.41-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.41-2) ...
Selecting previously unselected package file.
Preparing to unpack .../007-file_1%3a5.41-2_armhf.deb ...
Unpacking file (1:5.41-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../008-gettext-base_0.21-6_armhf.deb ...
Unpacking gettext-base (0.21-6) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../009-libsigsegv2_2.14-1_armhf.deb ...
Unpacking libsigsegv2:armhf (2.14-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../010-m4_1.4.18-5_armhf.deb ...
Unpacking m4 (1.4.18-5) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../011-autoconf_2.71-2_all.deb ...
Unpacking autoconf (2.71-2) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../012-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../013-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../014-autopoint_0.21-6_all.deb ...
Unpacking autopoint (0.21-6) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../015-libdebhelper-perl_13.7_all.deb ...
Unpacking libdebhelper-perl (13.7) ...
Selecting previously unselected package libtool.
Preparing to unpack .../016-libtool_2.4.7-3_all.deb ...
Unpacking libtool (2.4.7-3) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../017-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../018-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../019-libsub-override-perl_0.09-2_all.deb ...
Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../020-libfile-stripnondeterminism-perl_1.13.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.13.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../021-dh-strip-nondeterminism_1.13.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.13.0-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../022-libelf1_0.186-1_armhf.deb ...
Unpacking libelf1:armhf (0.186-1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../023-dwz_0.14-1_armhf.deb ...
Unpacking dwz (0.14-1) ...
Selecting previously unselected package libicu67:armhf.
Preparing to unpack .../024-libicu67_67.1-7_armhf.deb ...
Unpacking libicu67:armhf (67.1-7) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../025-libxml2_2.9.13+dfsg-1_armhf.deb ...
Unpacking libxml2:armhf (2.9.13+dfsg-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../026-gettext_0.21-6_armhf.deb ...
Unpacking gettext (0.21-6) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../027-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../028-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../029-debhelper_13.7_all.deb ...
Unpacking debhelper (13.7) ...
Selecting previously unselected package python3-lib2to3.
Preparing to unpack .../030-python3-lib2to3_3.9.12-1_all.deb ...
Unpacking python3-lib2to3 (3.9.12-1) ...
Selecting previously unselected package python3-distutils.
Preparing to unpack .../031-python3-distutils_3.9.12-1_all.deb ...
Unpacking python3-distutils (3.9.12-1) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../032-dh-python_5.20220403_all.deb ...
Unpacking dh-python (5.20220403) ...
Selecting previously unselected package libbrotli1:armhf.
Preparing to unpack .../033-libbrotli1_1.0.9-2+b2_armhf.deb ...
Unpacking libbrotli1:armhf (1.0.9-2+b2) ...
Selecting previously unselected package libpng16-16:armhf.
Preparing to unpack .../034-libpng16-16_1.6.37-3_armhf.deb ...
Unpacking libpng16-16:armhf (1.6.37-3) ...
Selecting previously unselected package libfreetype6:armhf.
Preparing to unpack .../035-libfreetype6_2.11.1+dfsg-1_armhf.deb ...
Unpacking libfreetype6:armhf (2.11.1+dfsg-1) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../036-fonts-dejavu-core_2.37-2_all.deb ...
Unpacking fonts-dejavu-core (2.37-2) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../037-fontconfig-config_2.13.1-4.4_all.deb ...
Unpacking fontconfig-config (2.13.1-4.4) ...
Selecting previously unselected package libfontconfig1:armhf.
Preparing to unpack .../038-libfontconfig1_2.13.1-4.4_armhf.deb ...
Unpacking libfontconfig1:armhf (2.13.1-4.4) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../039-fontconfig_2.13.1-4.4_armhf.deb ...
Unpacking fontconfig (2.13.1-4.4) ...
Selecting previously unselected package fonts-lmodern.
Preparing to unpack .../040-fonts-lmodern_2.005-1_all.deb ...
Unpacking fonts-lmodern (2.005-1) ...
Selecting previously unselected package libglvnd0:armhf.
Preparing to unpack .../041-libglvnd0_1.4.0-1_armhf.deb ...
Unpacking libglvnd0:armhf (1.4.0-1) ...
Selecting previously unselected package libxau6:armhf.
Preparing to unpack .../042-libxau6_1%3a1.0.9-1_armhf.deb ...
Unpacking libxau6:armhf (1:1.0.9-1) ...
Selecting previously unselected package libmd0:armhf.
Preparing to unpack .../043-libmd0_1.0.4-1_armhf.deb ...
Unpacking libmd0:armhf (1.0.4-1) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../044-libbsd0_0.11.6-1_armhf.deb ...
Unpacking libbsd0:armhf (0.11.6-1) ...
Selecting previously unselected package libxdmcp6:armhf.
Preparing to unpack .../045-libxdmcp6_1%3a1.1.2-3_armhf.deb ...
Unpacking libxdmcp6:armhf (1:1.1.2-3) ...
Selecting previously unselected package libxcb1:armhf.
Preparing to unpack .../046-libxcb1_1.14-3_armhf.deb ...
Unpacking libxcb1:armhf (1.14-3) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../047-libx11-data_2%3a1.7.5-1_all.deb ...
Unpacking libx11-data (2:1.7.5-1) ...
Selecting previously unselected package libx11-6:armhf.
Preparing to unpack .../048-libx11-6_2%3a1.7.5-1_armhf.deb ...
Unpacking libx11-6:armhf (2:1.7.5-1) ...
Selecting previously unselected package libdrm-common.
Preparing to unpack .../049-libdrm-common_2.4.110-1+rpi1_all.deb ...
Unpacking libdrm-common (2.4.110-1+rpi1) ...
Selecting previously unselected package libdrm2:armhf.
Preparing to unpack .../050-libdrm2_2.4.110-1+rpi1_armhf.deb ...
Unpacking libdrm2:armhf (2.4.110-1+rpi1) ...
Selecting previously unselected package libglapi-mesa:armhf.
Preparing to unpack .../051-libglapi-mesa_21.3.8-1+rpi1_armhf.deb ...
Unpacking libglapi-mesa:armhf (21.3.8-1+rpi1) ...
Selecting previously unselected package libx11-xcb1:armhf.
Preparing to unpack .../052-libx11-xcb1_2%3a1.7.5-1_armhf.deb ...
Unpacking libx11-xcb1:armhf (2:1.7.5-1) ...
Selecting previously unselected package libxcb-dri2-0:armhf.
Preparing to unpack .../053-libxcb-dri2-0_1.14-3_armhf.deb ...
Unpacking libxcb-dri2-0:armhf (1.14-3) ...
Selecting previously unselected package libxcb-dri3-0:armhf.
Preparing to unpack .../054-libxcb-dri3-0_1.14-3_armhf.deb ...
Unpacking libxcb-dri3-0:armhf (1.14-3) ...
Selecting previously unselected package libxcb-glx0:armhf.
Preparing to unpack .../055-libxcb-glx0_1.14-3_armhf.deb ...
Unpacking libxcb-glx0:armhf (1.14-3) ...
Selecting previously unselected package libxcb-present0:armhf.
Preparing to unpack .../056-libxcb-present0_1.14-3_armhf.deb ...
Unpacking libxcb-present0:armhf (1.14-3) ...
Selecting previously unselected package libxcb-shm0:armhf.
Preparing to unpack .../057-libxcb-shm0_1.14-3_armhf.deb ...
Unpacking libxcb-shm0:armhf (1.14-3) ...
Selecting previously unselected package libxcb-sync1:armhf.
Preparing to unpack .../058-libxcb-sync1_1.14-3_armhf.deb ...
Unpacking libxcb-sync1:armhf (1.14-3) ...
Selecting previously unselected package libxcb-xfixes0:armhf.
Preparing to unpack .../059-libxcb-xfixes0_1.14-3_armhf.deb ...
Unpacking libxcb-xfixes0:armhf (1.14-3) ...
Selecting previously unselected package libxext6:armhf.
Preparing to unpack .../060-libxext6_2%3a1.3.4-1_armhf.deb ...
Unpacking libxext6:armhf (2:1.3.4-1) ...
Selecting previously unselected package libxfixes3:armhf.
Preparing to unpack .../061-libxfixes3_1%3a6.0.0-1_armhf.deb ...
Unpacking libxfixes3:armhf (1:6.0.0-1) ...
Selecting previously unselected package libxshmfence1:armhf.
Preparing to unpack .../062-libxshmfence1_1.3-1_armhf.deb ...
Unpacking libxshmfence1:armhf (1.3-1) ...
Selecting previously unselected package libxxf86vm1:armhf.
Preparing to unpack .../063-libxxf86vm1_1%3a1.1.4-1+b2_armhf.deb ...
Unpacking libxxf86vm1:armhf (1:1.1.4-1+b2) ...
Selecting previously unselected package libdrm-amdgpu1:armhf.
Preparing to unpack .../064-libdrm-amdgpu1_2.4.110-1+rpi1_armhf.deb ...
Unpacking libdrm-amdgpu1:armhf (2.4.110-1+rpi1) ...
Selecting previously unselected package libdrm-nouveau2:armhf.
Preparing to unpack .../065-libdrm-nouveau2_2.4.110-1+rpi1_armhf.deb ...
Unpacking libdrm-nouveau2:armhf (2.4.110-1+rpi1) ...
Selecting previously unselected package libdrm-radeon1:armhf.
Preparing to unpack .../066-libdrm-radeon1_2.4.110-1+rpi1_armhf.deb ...
Unpacking libdrm-radeon1:armhf (2.4.110-1+rpi1) ...
Selecting previously unselected package libedit2:armhf.
Preparing to unpack .../067-libedit2_3.1-20210910-1_armhf.deb ...
Unpacking libedit2:armhf (3.1-20210910-1) ...
Selecting previously unselected package libz3-4:armhf.
Preparing to unpack .../068-libz3-4_4.8.12-1_armhf.deb ...
Unpacking libz3-4:armhf (4.8.12-1) ...
Selecting previously unselected package libllvm13:armhf.
Preparing to unpack .../069-libllvm13_1%3a13.0.1-3+rpi1+b1_armhf.deb ...
Unpacking libllvm13:armhf (1:13.0.1-3+rpi1+b1) ...
Selecting previously unselected package libsensors-config.
Preparing to unpack .../070-libsensors-config_1%3a3.6.0-7_all.deb ...
Unpacking libsensors-config (1:3.6.0-7) ...
Selecting previously unselected package libsensors5:armhf.
Preparing to unpack .../071-libsensors5_1%3a3.6.0-7_armhf.deb ...
Unpacking libsensors5:armhf (1:3.6.0-7) ...
Selecting previously unselected package libvulkan1:armhf.
Preparing to unpack .../072-libvulkan1_1.3.204.1-2_armhf.deb ...
Unpacking libvulkan1:armhf (1.3.204.1-2) ...
Selecting previously unselected package libgl1-mesa-dri:armhf.
Preparing to unpack .../073-libgl1-mesa-dri_21.3.8-1+rpi1_armhf.deb ...
Unpacking libgl1-mesa-dri:armhf (21.3.8-1+rpi1) ...
Selecting previously unselected package libglx-mesa0:armhf.
Preparing to unpack .../074-libglx-mesa0_21.3.8-1+rpi1_armhf.deb ...
Unpacking libglx-mesa0:armhf (21.3.8-1+rpi1) ...
Selecting previously unselected package libglx0:armhf.
Preparing to unpack .../075-libglx0_1.4.0-1_armhf.deb ...
Unpacking libglx0:armhf (1.4.0-1) ...
Selecting previously unselected package libgl1:armhf.
Preparing to unpack .../076-libgl1_1.4.0-1_armhf.deb ...
Unpacking libgl1:armhf (1.4.0-1) ...
Selecting previously unselected package libxi6:armhf.
Preparing to unpack .../077-libxi6_2%3a1.8-1_armhf.deb ...
Unpacking libxi6:armhf (2:1.8-1) ...
Selecting previously unselected package freeglut3:armhf.
Preparing to unpack .../078-freeglut3_2.8.1-6_armhf.deb ...
Unpacking freeglut3:armhf (2.8.1-6) ...
Selecting previously unselected package xorg-sgml-doctools.
Preparing to unpack .../079-xorg-sgml-doctools_1%3a1.11-1.1_all.deb ...
Unpacking xorg-sgml-doctools (1:1.11-1.1) ...
Selecting previously unselected package x11proto-dev.
Preparing to unpack .../080-x11proto-dev_2021.5-1_all.deb ...
Unpacking x11proto-dev (2021.5-1) ...
Selecting previously unselected package libxau-dev:armhf.
Preparing to unpack .../081-libxau-dev_1%3a1.0.9-1_armhf.deb ...
Unpacking libxau-dev:armhf (1:1.0.9-1) ...
Selecting previously unselected package libxdmcp-dev:armhf.
Preparing to unpack .../082-libxdmcp-dev_1%3a1.1.2-3_armhf.deb ...
Unpacking libxdmcp-dev:armhf (1:1.1.2-3) ...
Selecting previously unselected package xtrans-dev.
Preparing to unpack .../083-xtrans-dev_1.4.0-1_all.deb ...
Unpacking xtrans-dev (1.4.0-1) ...
Selecting previously unselected package libpthread-stubs0-dev:armhf.
Preparing to unpack .../084-libpthread-stubs0-dev_0.4-1_armhf.deb ...
Unpacking libpthread-stubs0-dev:armhf (0.4-1) ...
Selecting previously unselected package libxcb1-dev:armhf.
Preparing to unpack .../085-libxcb1-dev_1.14-3_armhf.deb ...
Unpacking libxcb1-dev:armhf (1.14-3) ...
Selecting previously unselected package libx11-dev:armhf.
Preparing to unpack .../086-libx11-dev_2%3a1.7.5-1_armhf.deb ...
Unpacking libx11-dev:armhf (2:1.7.5-1) ...
Selecting previously unselected package libglx-dev:armhf.
Preparing to unpack .../087-libglx-dev_1.4.0-1_armhf.deb ...
Unpacking libglx-dev:armhf (1.4.0-1) ...
Selecting previously unselected package libgl-dev:armhf.
Preparing to unpack .../088-libgl-dev_1.4.0-1_armhf.deb ...
Unpacking libgl-dev:armhf (1.4.0-1) ...
Selecting previously unselected package libglvnd-core-dev:armhf.
Preparing to unpack .../089-libglvnd-core-dev_1.4.0-1_armhf.deb ...
Unpacking libglvnd-core-dev:armhf (1.4.0-1) ...
Selecting previously unselected package libwayland-server0:armhf.
Preparing to unpack .../090-libwayland-server0_1.20.0-1_armhf.deb ...
Unpacking libwayland-server0:armhf (1.20.0-1) ...
Selecting previously unselected package libgbm1:armhf.
Preparing to unpack .../091-libgbm1_21.3.8-1+rpi1_armhf.deb ...
Unpacking libgbm1:armhf (21.3.8-1+rpi1) ...
Selecting previously unselected package libwayland-client0:armhf.
Preparing to unpack .../092-libwayland-client0_1.20.0-1_armhf.deb ...
Unpacking libwayland-client0:armhf (1.20.0-1) ...
Selecting previously unselected package libegl-mesa0:armhf.
Preparing to unpack .../093-libegl-mesa0_21.3.8-1+rpi1_armhf.deb ...
Unpacking libegl-mesa0:armhf (21.3.8-1+rpi1) ...
Selecting previously unselected package libegl1:armhf.
Preparing to unpack .../094-libegl1_1.4.0-1_armhf.deb ...
Unpacking libegl1:armhf (1.4.0-1) ...
Selecting previously unselected package libegl-dev:armhf.
Preparing to unpack .../095-libegl-dev_1.4.0-1_armhf.deb ...
Unpacking libegl-dev:armhf (1.4.0-1) ...
Selecting previously unselected package libgles1:armhf.
Preparing to unpack .../096-libgles1_1.4.0-1_armhf.deb ...
Unpacking libgles1:armhf (1.4.0-1) ...
Selecting previously unselected package libgles2:armhf.
Preparing to unpack .../097-libgles2_1.4.0-1_armhf.deb ...
Unpacking libgles2:armhf (1.4.0-1) ...
Selecting previously unselected package libgles-dev:armhf.
Preparing to unpack .../098-libgles-dev_1.4.0-1_armhf.deb ...
Unpacking libgles-dev:armhf (1.4.0-1) ...
Selecting previously unselected package libopengl0:armhf.
Preparing to unpack .../099-libopengl0_1.4.0-1_armhf.deb ...
Unpacking libopengl0:armhf (1.4.0-1) ...
Selecting previously unselected package libopengl-dev:armhf.
Preparing to unpack .../100-libopengl-dev_1.4.0-1_armhf.deb ...
Unpacking libopengl-dev:armhf (1.4.0-1) ...
Selecting previously unselected package libglvnd-dev:armhf.
Preparing to unpack .../101-libglvnd-dev_1.4.0-1_armhf.deb ...
Unpacking libglvnd-dev:armhf (1.4.0-1) ...
Selecting previously unselected package libgl1-mesa-dev:armhf.
Preparing to unpack .../102-libgl1-mesa-dev_21.3.8-1+rpi1_armhf.deb ...
Unpacking libgl1-mesa-dev:armhf (21.3.8-1+rpi1) ...
Selecting previously unselected package libglu1-mesa:armhf.
Preparing to unpack .../103-libglu1-mesa_9.0.2-1_armhf.deb ...
Unpacking libglu1-mesa:armhf (9.0.2-1) ...
Selecting previously unselected package libglu1-mesa-dev:armhf.
Preparing to unpack .../104-libglu1-mesa-dev_9.0.2-1_armhf.deb ...
Unpacking libglu1-mesa-dev:armhf (9.0.2-1) ...
Selecting previously unselected package libxext-dev:armhf.
Preparing to unpack .../105-libxext-dev_2%3a1.3.4-1_armhf.deb ...
Unpacking libxext-dev:armhf (2:1.3.4-1) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../106-x11-common_1%3a7.7+23_all.deb ...
Unpacking x11-common (1:7.7+23) ...
Selecting previously unselected package libice6:armhf.
Preparing to unpack .../107-libice6_2%3a1.0.10-1_armhf.deb ...
Unpacking libice6:armhf (2:1.0.10-1) ...
Selecting previously unselected package libsm6:armhf.
Preparing to unpack .../108-libsm6_2%3a1.2.3-1_armhf.deb ...
Unpacking libsm6:armhf (2:1.2.3-1) ...
Selecting previously unselected package libxt6:armhf.
Preparing to unpack .../109-libxt6_1%3a1.2.1-1_armhf.deb ...
Unpacking libxt6:armhf (1:1.2.1-1) ...
Selecting previously unselected package libice-dev:armhf.
Preparing to unpack .../110-libice-dev_2%3a1.0.10-1_armhf.deb ...
Unpacking libice-dev:armhf (2:1.0.10-1) ...
Selecting previously unselected package libsm-dev:armhf.
Preparing to unpack .../111-libsm-dev_2%3a1.2.3-1_armhf.deb ...
Unpacking libsm-dev:armhf (2:1.2.3-1) ...
Selecting previously unselected package libxt-dev:armhf.
Preparing to unpack .../112-libxt-dev_1%3a1.2.1-1_armhf.deb ...
Unpacking libxt-dev:armhf (1:1.2.1-1) ...
Selecting previously unselected package freeglut3-dev:armhf.
Preparing to unpack .../113-freeglut3-dev_2.8.1-6_armhf.deb ...
Unpacking freeglut3-dev:armhf (2.8.1-6) ...
Selecting previously unselected package hdf5-helpers.
Preparing to unpack .../114-hdf5-helpers_1.10.7+repack-4+rpi1_armhf.deb ...
Unpacking hdf5-helpers (1.10.7+repack-4+rpi1) ...
Selecting previously unselected package icu-devtools.
Preparing to unpack .../115-icu-devtools_67.1-7_armhf.deb ...
Unpacking icu-devtools (67.1-7) ...
Selecting previously unselected package libaec0:armhf.
Preparing to unpack .../116-libaec0_1.0.6-1_armhf.deb ...
Unpacking libaec0:armhf (1.0.6-1) ...
Selecting previously unselected package libsz2:armhf.
Preparing to unpack .../117-libsz2_1.0.6-1_armhf.deb ...
Unpacking libsz2:armhf (1.0.6-1) ...
Selecting previously unselected package libaec-dev:armhf.
Preparing to unpack .../118-libaec-dev_1.0.6-1_armhf.deb ...
Unpacking libaec-dev:armhf (1.0.6-1) ...
Selecting previously unselected package libavahi-common-data:armhf.
Preparing to unpack .../119-libavahi-common-data_0.8-5_armhf.deb ...
Unpacking libavahi-common-data:armhf (0.8-5) ...
Selecting previously unselected package libavahi-common3:armhf.
Preparing to unpack .../120-libavahi-common3_0.8-5_armhf.deb ...
Unpacking libavahi-common3:armhf (0.8-5) ...
Selecting previously unselected package libdbus-1-3:armhf.
Preparing to unpack .../121-libdbus-1-3_1.14.0-1_armhf.deb ...
Unpacking libdbus-1-3:armhf (1.14.0-1) ...
Selecting previously unselected package libavahi-client3:armhf.
Preparing to unpack .../122-libavahi-client3_0.8-5_armhf.deb ...
Unpacking libavahi-client3:armhf (0.8-5) ...
Selecting previously unselected package libblas3:armhf.
Preparing to unpack .../123-libblas3_3.10.0-2_armhf.deb ...
Unpacking libblas3:armhf (3.10.0-2) ...
Selecting previously unselected package libbrotli-dev:armhf.
Preparing to unpack .../124-libbrotli-dev_1.0.9-2+b2_armhf.deb ...
Unpacking libbrotli-dev:armhf (1.0.9-2+b2) ...
Selecting previously unselected package libpixman-1-0:armhf.
Preparing to unpack .../125-libpixman-1-0_0.40.0-1_armhf.deb ...
Unpacking libpixman-1-0:armhf (0.40.0-1) ...
Selecting previously unselected package libxcb-render0:armhf.
Preparing to unpack .../126-libxcb-render0_1.14-3_armhf.deb ...
Unpacking libxcb-render0:armhf (1.14-3) ...
Selecting previously unselected package libxrender1:armhf.
Preparing to unpack .../127-libxrender1_1%3a0.9.10-1_armhf.deb ...
Unpacking libxrender1:armhf (1:0.9.10-1) ...
Selecting previously unselected package libcairo2:armhf.
Preparing to unpack .../128-libcairo2_1.16.0-5_armhf.deb ...
Unpacking libcairo2:armhf (1.16.0-5) ...
Selecting previously unselected package libcups2:armhf.
Preparing to unpack .../129-libcups2_2.4.1op1-2_armhf.deb ...
Unpacking libcups2:armhf (2.4.1op1-2) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../130-libnghttp2-14_1.43.0-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.43.0-1) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../131-libpsl5_0.21.0-1.2_armhf.deb ...
Unpacking libpsl5:armhf (0.21.0-1.2) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../132-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../133-libssh2-1_1.10.0-3_armhf.deb ...
Unpacking libssh2-1:armhf (1.10.0-3) ...
Selecting previously unselected package libcurl3-gnutls:armhf.
Preparing to unpack .../134-libcurl3-gnutls_7.82.0-2_armhf.deb ...
Unpacking libcurl3-gnutls:armhf (7.82.0-2) ...
Selecting previously unselected package libcurl4:armhf.
Preparing to unpack .../135-libcurl4_7.82.0-2_armhf.deb ...
Unpacking libcurl4:armhf (7.82.0-2) ...
Selecting previously unselected package libcurl4-openssl-dev:armhf.
Preparing to unpack .../136-libcurl4-openssl-dev_7.82.0-2_armhf.deb ...
Unpacking libcurl4-openssl-dev:armhf (7.82.0-2) ...
Selecting previously unselected package libdouble-conversion3:armhf.
Preparing to unpack .../137-libdouble-conversion3_3.1.7-4_armhf.deb ...
Unpacking libdouble-conversion3:armhf (3.1.7-4) ...
Selecting previously unselected package libevdev2:armhf.
Preparing to unpack .../138-libevdev2_1.12.1+dfsg-1_armhf.deb ...
Unpacking libevdev2:armhf (1.12.1+dfsg-1) ...
Selecting previously unselected package libexpat1-dev:armhf.
Preparing to unpack .../139-libexpat1-dev_2.4.8-1_armhf.deb ...
Unpacking libexpat1-dev:armhf (2.4.8-1) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../140-zlib1g-dev_1%3a1.2.11.dfsg-4_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-4) ...
Selecting previously unselected package libpng-dev:armhf.
Preparing to unpack .../141-libpng-dev_1.6.37-3_armhf.deb ...
Unpacking libpng-dev:armhf (1.6.37-3) ...
Selecting previously unselected package libfreetype-dev:armhf.
Preparing to unpack .../142-libfreetype-dev_2.11.1+dfsg-1_armhf.deb ...
Unpacking libfreetype-dev:armhf (2.11.1+dfsg-1) ...
Selecting previously unselected package libfreetype6-dev:armhf.
Preparing to unpack .../143-libfreetype6-dev_2.11.1+dfsg-1_armhf.deb ...
Unpacking libfreetype6-dev:armhf (2.11.1+dfsg-1) ...
Selecting previously unselected package libgfortran5:armhf.
Preparing to unpack .../144-libgfortran5_12-20220319-1+rpi1_armhf.deb ...
Unpacking libgfortran5:armhf (12-20220319-1+rpi1) ...
Selecting previously unselected package libglew2.2:armhf.
Preparing to unpack .../145-libglew2.2_2.2.0-4_armhf.deb ...
Unpacking libglew2.2:armhf (2.2.0-4) ...
Selecting previously unselected package libglew-dev:armhf.
Preparing to unpack .../146-libglew-dev_2.2.0-4_armhf.deb ...
Unpacking libglew-dev:armhf (2.2.0-4) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../147-libglib2.0-0_2.72.0-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.72.0-1) ...
Selecting previously unselected package libglm-dev.
Preparing to unpack .../148-libglm-dev_0.9.9.8+ds-2_all.deb ...
Unpacking libglm-dev (0.9.9.8+ds-2) ...
Selecting previously unselected package libgraphite2-3:armhf.
Preparing to unpack .../149-libgraphite2-3_1.3.14-1_armhf.deb ...
Unpacking libgraphite2-3:armhf (1.3.14-1) ...
Selecting previously unselected package libgudev-1.0-0:armhf.
Preparing to unpack .../150-libgudev-1.0-0_237-2_armhf.deb ...
Unpacking libgudev-1.0-0:armhf (237-2) ...
Selecting previously unselected package libharfbuzz0b:armhf.
Preparing to unpack .../151-libharfbuzz0b_2.7.4-1_armhf.deb ...
Unpacking libharfbuzz0b:armhf (2.7.4-1) ...
Selecting previously unselected package libhdf5-103-1:armhf.
Preparing to unpack .../152-libhdf5-103-1_1.10.7+repack-4+rpi1_armhf.deb ...
Unpacking libhdf5-103-1:armhf (1.10.7+repack-4+rpi1) ...
Selecting previously unselected package libhdf5-cpp-103-1:armhf.
Preparing to unpack .../153-libhdf5-cpp-103-1_1.10.7+repack-4+rpi1_armhf.deb ...
Unpacking libhdf5-cpp-103-1:armhf (1.10.7+repack-4+rpi1) ...
Selecting previously unselected package libhdf5-fortran-102:armhf.
Preparing to unpack .../154-libhdf5-fortran-102_1.10.7+repack-4+rpi1_armhf.deb ...
Unpacking libhdf5-fortran-102:armhf (1.10.7+repack-4+rpi1) ...
Selecting previously unselected package libhdf5-hl-100:armhf.
Preparing to unpack .../155-libhdf5-hl-100_1.10.7+repack-4+rpi1_armhf.deb ...
Unpacking libhdf5-hl-100:armhf (1.10.7+repack-4+rpi1) ...
Selecting previously unselected package libhdf5-hl-fortran-100:armhf.
Preparing to unpack .../156-libhdf5-hl-fortran-100_1.10.7+repack-4+rpi1_armhf.deb ...
Unpacking libhdf5-hl-fortran-100:armhf (1.10.7+repack-4+rpi1) ...
Selecting previously unselected package libhdf5-hl-cpp-100:armhf.
Preparing to unpack .../157-libhdf5-hl-cpp-100_1.10.7+repack-4+rpi1_armhf.deb ...
Unpacking libhdf5-hl-cpp-100:armhf (1.10.7+repack-4+rpi1) ...
Selecting previously unselected package libjpeg62-turbo:armhf.
Preparing to unpack .../158-libjpeg62-turbo_1%3a2.1.2-1_armhf.deb ...
Unpacking libjpeg62-turbo:armhf (1:2.1.2-1) ...
Selecting previously unselected package libjpeg62-turbo-dev:armhf.
Preparing to unpack .../159-libjpeg62-turbo-dev_1%3a2.1.2-1_armhf.deb ...
Unpacking libjpeg62-turbo-dev:armhf (1:2.1.2-1) ...
Selecting previously unselected package libjpeg-dev:armhf.
Preparing to unpack .../160-libjpeg-dev_1%3a2.1.2-1_armhf.deb ...
Unpacking libjpeg-dev:armhf (1:2.1.2-1) ...
Selecting previously unselected package libssl-dev:armhf.
Preparing to unpack .../161-libssl-dev_1.1.1n-1_armhf.deb ...
Unpacking libssl-dev:armhf (1.1.1n-1) ...
Selecting previously unselected package libhdf5-dev.
Preparing to unpack .../162-libhdf5-dev_1.10.7+repack-4+rpi1_armhf.deb ...
Unpacking libhdf5-dev (1.10.7+repack-4+rpi1) ...
Selecting previously unselected package libicu-dev:armhf.
Preparing to unpack .../163-libicu-dev_67.1-7_armhf.deb ...
Unpacking libicu-dev:armhf (67.1-7) ...
Selecting previously unselected package libwacom-common.
Preparing to unpack .../164-libwacom-common_2.2.0-1_all.deb ...
Unpacking libwacom-common (2.2.0-1) ...
Selecting previously unselected package libwacom9:armhf.
Preparing to unpack .../165-libwacom9_2.2.0-1_armhf.deb ...
Unpacking libwacom9:armhf (2.2.0-1) ...
Selecting previously unselected package libinput-bin.
Preparing to unpack .../166-libinput-bin_1.20.0-1_armhf.deb ...
Unpacking libinput-bin (1.20.0-1) ...
Selecting previously unselected package libmtdev1:armhf.
Preparing to unpack .../167-libmtdev1_1.1.6-1_armhf.deb ...
Unpacking libmtdev1:armhf (1.1.6-1) ...
Selecting previously unselected package libinput10:armhf.
Preparing to unpack .../168-libinput10_1.20.0-1_armhf.deb ...
Unpacking libinput10:armhf (1.20.0-1) ...
Selecting previously unselected package libjs-jquery.
Preparing to unpack .../169-libjs-jquery_3.6.0+dfsg+~3.5.13-1_all.deb ...
Unpacking libjs-jquery (3.6.0+dfsg+~3.5.13-1) ...
Selecting previously unselected package libjs-underscore.
Preparing to unpack .../170-libjs-underscore_1.13.2~dfsg-2_all.deb ...
Unpacking libjs-underscore (1.13.2~dfsg-2) ...
Selecting previously unselected package libjs-sphinxdoc.
Preparing to unpack .../171-libjs-sphinxdoc_4.5.0-3_all.deb ...
Unpacking libjs-sphinxdoc (4.5.0-3) ...
Selecting previously unselected package libkpathsea6:armhf.
Preparing to unpack .../172-libkpathsea6_2021.20210626.59705-1_armhf.deb ...
Unpacking libkpathsea6:armhf (2021.20210626.59705-1) ...
Selecting previously unselected package liblapack3:armhf.
Preparing to unpack .../173-liblapack3_3.10.0-2_armhf.deb ...
Unpacking liblapack3:armhf (3.10.0-2) ...
Selecting previously unselected package libmd4c0:armhf.
Preparing to unpack .../174-libmd4c0_0.4.8-1_armhf.deb ...
Unpacking libmd4c0:armhf (0.4.8-1) ...
Selecting previously unselected package libnetcdf19:armhf.
Preparing to unpack .../175-libnetcdf19_1%3a4.8.1-1_armhf.deb ...
Unpacking libnetcdf19:armhf (1:4.8.1-1) ...
Selecting previously unselected package libnetcdf-dev.
Preparing to unpack .../176-libnetcdf-dev_1%3a4.8.1-1_armhf.deb ...
Unpacking libnetcdf-dev (1:4.8.1-1) ...
Selecting previously unselected package libpaper1:armhf.
Preparing to unpack .../177-libpaper1_1.1.28_armhf.deb ...
Unpacking libpaper1:armhf (1.1.28) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../178-libpaper-utils_1.1.28_armhf.deb ...
Unpacking libpaper-utils (1.1.28) ...
Selecting previously unselected package libpcre2-16-0:armhf.
Preparing to unpack .../179-libpcre2-16-0_10.39-4_armhf.deb ...
Unpacking libpcre2-16-0:armhf (10.39-4) ...
Selecting previously unselected package libptexenc1:armhf.
Preparing to unpack .../180-libptexenc1_2021.20210626.59705-1_armhf.deb ...
Unpacking libptexenc1:armhf (2021.20210626.59705-1) ...
Selecting previously unselected package libpython3.10:armhf.
Preparing to unpack .../181-libpython3.10_3.10.4-1_armhf.deb ...
Unpacking libpython3.10:armhf (3.10.4-1) ...
Selecting previously unselected package libpython3.10-dev:armhf.
Preparing to unpack .../182-libpython3.10-dev_3.10.4-1_armhf.deb ...
Unpacking libpython3.10-dev:armhf (3.10.4-1) ...
Selecting previously unselected package libpython3-dev:armhf.
Preparing to unpack .../183-libpython3-dev_3.10.4-1_armhf.deb ...
Unpacking libpython3-dev:armhf (3.10.4-1) ...
Selecting previously unselected package libpython3.9-stdlib:armhf.
Preparing to unpack .../184-libpython3.9-stdlib_3.9.12-1+rpi1_armhf.deb ...
Unpacking libpython3.9-stdlib:armhf (3.9.12-1+rpi1) ...
Selecting previously unselected package libpython3.9:armhf.
Preparing to unpack .../185-libpython3.9_3.9.12-1+rpi1_armhf.deb ...
Unpacking libpython3.9:armhf (3.9.12-1+rpi1) ...
Selecting previously unselected package libpython3.9-dev:armhf.
Preparing to unpack .../186-libpython3.9-dev_3.9.12-1+rpi1_armhf.deb ...
Unpacking libpython3.9-dev:armhf (3.9.12-1+rpi1) ...
Selecting previously unselected package libpython3-all-dev:armhf.
Preparing to unpack .../187-libpython3-all-dev_3.10.4-1_armhf.deb ...
Unpacking libpython3-all-dev:armhf (3.10.4-1) ...
Selecting previously unselected package shared-mime-info.
Preparing to unpack .../188-shared-mime-info_2.1-2_armhf.deb ...
Unpacking shared-mime-info (2.1-2) ...
Selecting previously unselected package libqt5core5a:armhf.
Preparing to unpack .../189-libqt5core5a_5.15.2+dfsg-16+rpi1_armhf.deb ...
Unpacking libqt5core5a:armhf (5.15.2+dfsg-16+rpi1) ...
Selecting previously unselected package libqt5dbus5:armhf.
Preparing to unpack .../190-libqt5dbus5_5.15.2+dfsg-16+rpi1_armhf.deb ...
Unpacking libqt5dbus5:armhf (5.15.2+dfsg-16+rpi1) ...
Selecting previously unselected package libqt5network5:armhf.
Preparing to unpack .../191-libqt5network5_5.15.2+dfsg-16+rpi1_armhf.deb ...
Unpacking libqt5network5:armhf (5.15.2+dfsg-16+rpi1) ...
Selecting previously unselected package libxcb-icccm4:armhf.
Preparing to unpack .../192-libxcb-icccm4_0.4.1-1.1_armhf.deb ...
Unpacking libxcb-icccm4:armhf (0.4.1-1.1) ...
Selecting previously unselected package libxcb-util1:armhf.
Preparing to unpack .../193-libxcb-util1_0.4.0-1_armhf.deb ...
Unpacking libxcb-util1:armhf (0.4.0-1) ...
Selecting previously unselected package libxcb-image0:armhf.
Preparing to unpack .../194-libxcb-image0_0.4.0-2_armhf.deb ...
Unpacking libxcb-image0:armhf (0.4.0-2) ...
Selecting previously unselected package libxcb-keysyms1:armhf.
Preparing to unpack .../195-libxcb-keysyms1_0.4.0-1+b2_armhf.deb ...
Unpacking libxcb-keysyms1:armhf (0.4.0-1+b2) ...
Selecting previously unselected package libxcb-randr0:armhf.
Preparing to unpack .../196-libxcb-randr0_1.14-3_armhf.deb ...
Unpacking libxcb-randr0:armhf (1.14-3) ...
Selecting previously unselected package libxcb-render-util0:armhf.
Preparing to unpack .../197-libxcb-render-util0_0.3.9-1+b1_armhf.deb ...
Unpacking libxcb-render-util0:armhf (0.3.9-1+b1) ...
Selecting previously unselected package libxcb-shape0:armhf.
Preparing to unpack .../198-libxcb-shape0_1.14-3_armhf.deb ...
Unpacking libxcb-shape0:armhf (1.14-3) ...
Selecting previously unselected package libxcb-xinerama0:armhf.
Preparing to unpack .../199-libxcb-xinerama0_1.14-3_armhf.deb ...
Unpacking libxcb-xinerama0:armhf (1.14-3) ...
Selecting previously unselected package libxcb-xinput0:armhf.
Preparing to unpack .../200-libxcb-xinput0_1.14-3_armhf.deb ...
Unpacking libxcb-xinput0:armhf (1.14-3) ...
Selecting previously unselected package libxcb-xkb1:armhf.
Preparing to unpack .../201-libxcb-xkb1_1.14-3_armhf.deb ...
Unpacking libxcb-xkb1:armhf (1.14-3) ...
Selecting previously unselected package xkb-data.
Preparing to unpack .../202-xkb-data_2.35.1-1_all.deb ...
Unpacking xkb-data (2.35.1-1) ...
Selecting previously unselected package libxkbcommon0:armhf.
Preparing to unpack .../203-libxkbcommon0_1.4.0-1_armhf.deb ...
Unpacking libxkbcommon0:armhf (1.4.0-1) ...
Selecting previously unselected package libxkbcommon-x11-0:armhf.
Preparing to unpack .../204-libxkbcommon-x11-0_1.4.0-1_armhf.deb ...
Unpacking libxkbcommon-x11-0:armhf (1.4.0-1) ...
Selecting previously unselected package libqt5gui5:armhf.
Preparing to unpack .../205-libqt5gui5_5.15.2+dfsg-16+rpi1_armhf.deb ...
Unpacking libqt5gui5:armhf (5.15.2+dfsg-16+rpi1) ...
Selecting previously unselected package libqt5widgets5:armhf.
Preparing to unpack .../206-libqt5widgets5_5.15.2+dfsg-16+rpi1_armhf.deb ...
Unpacking libqt5widgets5:armhf (5.15.2+dfsg-16+rpi1) ...
Selecting previously unselected package libqt5xml5:armhf.
Preparing to unpack .../207-libqt5xml5_5.15.2+dfsg-16+rpi1_armhf.deb ...
Unpacking libqt5xml5:armhf (5.15.2+dfsg-16+rpi1) ...
Selecting previously unselected package libqt5designer5:armhf.
Preparing to unpack .../208-libqt5designer5_5.15.2-5_armhf.deb ...
Unpacking libqt5designer5:armhf (5.15.2-5) ...
Selecting previously unselected package libqt5sql5:armhf.
Preparing to unpack .../209-libqt5sql5_5.15.2+dfsg-16+rpi1_armhf.deb ...
Unpacking libqt5sql5:armhf (5.15.2+dfsg-16+rpi1) ...
Selecting previously unselected package libqt5help5:armhf.
Preparing to unpack .../210-libqt5help5_5.15.2-5_armhf.deb ...
Unpacking libqt5help5:armhf (5.15.2-5) ...
Selecting previously unselected package libqt5opengl5:armhf.
Preparing to unpack .../211-libqt5opengl5_5.15.2+dfsg-16+rpi1_armhf.deb ...
Unpacking libqt5opengl5:armhf (5.15.2+dfsg-16+rpi1) ...
Selecting previously unselected package libqt5printsupport5:armhf.
Preparing to unpack .../212-libqt5printsupport5_5.15.2+dfsg-16+rpi1_armhf.deb ...
Unpacking libqt5printsupport5:armhf (5.15.2+dfsg-16+rpi1) ...
Selecting previously unselected package libqt5test5:armhf.
Preparing to unpack .../213-libqt5test5_5.15.2+dfsg-16+rpi1_armhf.deb ...
Unpacking libqt5test5:armhf (5.15.2+dfsg-16+rpi1) ...
Selecting previously unselected package libsynctex2:armhf.
Preparing to unpack .../214-libsynctex2_2021.20210626.59705-1_armhf.deb ...
Unpacking libsynctex2:armhf (2021.20210626.59705-1) ...
Selecting previously unselected package libteckit0:armhf.
Preparing to unpack .../215-libteckit0_2.5.11+ds1-1_armhf.deb ...
Unpacking libteckit0:armhf (2.5.11+ds1-1) ...
Selecting previously unselected package libtexlua53:armhf.
Preparing to unpack .../216-libtexlua53_2021.20210626.59705-1_armhf.deb ...
Unpacking libtexlua53:armhf (2021.20210626.59705-1) ...
Selecting previously unselected package libtexluajit2:armhf.
Preparing to unpack .../217-libtexluajit2_2021.20210626.59705-1_armhf.deb ...
Unpacking libtexluajit2:armhf (2021.20210626.59705-1) ...
Selecting previously unselected package libxmu6:armhf.
Preparing to unpack .../218-libxmu6_2%3a1.1.3-3_armhf.deb ...
Unpacking libxmu6:armhf (2:1.1.3-3) ...
Selecting previously unselected package libxpm4:armhf.
Preparing to unpack .../219-libxpm4_1%3a3.5.12-1_armhf.deb ...
Unpacking libxpm4:armhf (1:3.5.12-1) ...
Selecting previously unselected package libxaw7:armhf.
Preparing to unpack .../220-libxaw7_2%3a1.0.14-1_armhf.deb ...
Unpacking libxaw7:armhf (2:1.0.14-1) ...
Selecting previously unselected package libxml2-dev:armhf.
Preparing to unpack .../221-libxml2-dev_2.9.13+dfsg-1_armhf.deb ...
Unpacking libxml2-dev:armhf (2.9.13+dfsg-1) ...
Selecting previously unselected package libzzip-0-13:armhf.
Preparing to unpack .../222-libzzip-0-13_0.13.72+dfsg.1-1.1_armhf.deb ...
Unpacking libzzip-0-13:armhf (0.13.72+dfsg.1-1.1) ...
Selecting previously unselected package python3.9.
Preparing to unpack .../223-python3.9_3.9.12-1+rpi1_armhf.deb ...
Unpacking python3.9 (3.9.12-1+rpi1) ...
Selecting previously unselected package python3-all.
Preparing to unpack .../224-python3-all_3.10.4-1_armhf.deb ...
Unpacking python3-all (3.10.4-1) ...
Selecting previously unselected package python3.10-dev.
Preparing to unpack .../225-python3.10-dev_3.10.4-1_armhf.deb ...
Unpacking python3.10-dev (3.10.4-1) ...
Selecting previously unselected package python3-dev.
Preparing to unpack .../226-python3-dev_3.10.4-1_armhf.deb ...
Unpacking python3-dev (3.10.4-1) ...
Selecting previously unselected package python3.9-dev.
Preparing to unpack .../227-python3.9-dev_3.9.12-1+rpi1_armhf.deb ...
Unpacking python3.9-dev (3.9.12-1+rpi1) ...
Selecting previously unselected package python3-all-dev.
Preparing to unpack .../228-python3-all-dev_3.10.4-1_armhf.deb ...
Unpacking python3-all-dev (3.10.4-1) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../229-python3-pkg-resources_59.6.0-1.2_all.deb ...
Unpacking python3-pkg-resources (59.6.0-1.2) ...
Selecting previously unselected package python3-numpy.
Preparing to unpack .../230-python3-numpy_1%3a1.21.5-1+b1_armhf.deb ...
Unpacking python3-numpy (1:1.21.5-1+b1) ...
Selecting previously unselected package python3-opengl.
Preparing to unpack .../231-python3-opengl_3.1.5+dfsg-1_all.deb ...
Unpacking python3-opengl (3.1.5+dfsg-1) ...
Selecting previously unselected package python3-pyqt5.sip.
Preparing to unpack .../232-python3-pyqt5.sip_12.9.1-1+b1_armhf.deb ...
Unpacking python3-pyqt5.sip (12.9.1-1+b1) ...
Selecting previously unselected package python3-pyqt5.
Preparing to unpack .../233-python3-pyqt5_5.15.6+dfsg-1_armhf.deb ...
Unpacking python3-pyqt5 (5.15.6+dfsg-1) ...
Selecting previously unselected package python3-pyqt5.qtopengl.
Preparing to unpack .../234-python3-pyqt5.qtopengl_5.15.6+dfsg-1_armhf.deb ...
Unpacking python3-pyqt5.qtopengl (5.15.6+dfsg-1) ...
Selecting previously unselected package t1utils.
Preparing to unpack .../235-t1utils_1.41-4_armhf.deb ...
Unpacking t1utils (1.41-4) ...
Selecting previously unselected package texlive-binaries.
Preparing to unpack .../236-texlive-binaries_2021.20210626.59705-1_armhf.deb ...
Unpacking texlive-binaries (2021.20210626.59705-1) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../237-xdg-utils_1.1.3-4.1_all.deb ...
Unpacking xdg-utils (1.1.3-4.1) ...
Selecting previously unselected package texlive-base.
Preparing to unpack .../238-texlive-base_2021.20220204-1_all.deb ...
Unpacking texlive-base (2021.20220204-1) ...
Selecting previously unselected package texlive-latex-base.
Preparing to unpack .../239-texlive-latex-base_2021.20220204-1_all.deb ...
Unpacking texlive-latex-base (2021.20220204-1) ...
Selecting previously unselected package sbuild-build-depends-pymol-dummy.
Preparing to unpack .../240-sbuild-build-depends-pymol-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-pymol-dummy (0.invalid.0) ...
Setting up media-types (7.1.0) ...
Setting up libpipeline1:armhf (1.5.5-1) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up libglm-dev (0.9.9.8+ds-2) ...
Setting up libpixman-1-0:armhf (0.40.0-1) ...
Setting up libwayland-server0:armhf (1.20.0-1) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libdouble-conversion3:armhf (3.1.7-4) ...
Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up bsdextrautils (2.38-4) ...
Setting up libglvnd-core-dev:armhf (1.4.0-1) ...
Setting up hdf5-helpers (1.10.7+repack-4+rpi1) ...
Setting up libicu67:armhf (67.1-7) ...
Setting up libmagic-mgc (1:5.41-2) ...
Setting up libtexlua53:armhf (2021.20210626.59705-1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.72.0-1) ...
No schema files found: doing nothing.
Setting up libpython3.9-minimal:armhf (3.9.12-1+rpi1) ...
Setting up libglvnd0:armhf (1.4.0-1) ...
Setting up libtexluajit2:armhf (2021.20210626.59705-1) ...
Setting up libdebhelper-perl (13.7) ...
Setting up libbrotli1:armhf (1.0.9-2+b2) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libsensors-config (1:3.6.0-7) ...
Setting up libnghttp2-14:armhf (1.43.0-1) ...
Setting up libmagic1:armhf (1:5.41-2) ...
Setting up gettext-base (0.21-6) ...
Setting up xkb-data (2.35.1-1) ...
Setting up libzzip-0-13:armhf (0.13.72+dfsg.1-1.1) ...
Setting up file (1:5.41-2) ...
Setting up libpthread-stubs0-dev:armhf (0.4-1) ...
Setting up libpcre2-16-0:armhf (10.39-4) ...
Setting up libaec0:armhf (1.0.6-1) ...
Setting up libopengl0:armhf (1.4.0-1) ...
Setting up xtrans-dev (1.4.0-1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libz3-4:armhf (4.8.12-1) ...
Setting up libblas3:armhf (3.10.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libgles2:armhf (1.4.0-1) ...
Setting up libexpat1-dev:armhf (2.4.8-1) ...
Setting up libjpeg62-turbo:armhf (1:2.1.2-1) ...
Setting up libx11-data (2:1.7.5-1) ...
Setting up libjpeg62-turbo-dev:armhf (1:2.1.2-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libteckit0:armhf (2.5.11+ds1-1) ...
Setting up libavahi-common-data:armhf (0.8-5) ...
Setting up libgles1:armhf (1.4.0-1) ...
Setting up libdbus-1-3:armhf (1.14.0-1) ...
Setting up libsigsegv2:armhf (2.14-1) ...
Setting up t1utils (1.41-4) ...
Setting up libssl-dev:armhf (1.1.1n-1) ...
Setting up libpng16-16:armhf (1.6.37-3) ...
Setting up autopoint (0.21-6) ...
Setting up icu-devtools (67.1-7) ...
Setting up fonts-dejavu-core (2.37-2) ...
Setting up ucf (3.0043) ...
Setting up libsensors5:armhf (1:3.6.0-7) ...
Setting up libglapi-mesa:armhf (21.3.8-1+rpi1) ...
Setting up libkpathsea6:armhf (2021.20210626.59705-1) ...
Setting up libgfortran5:armhf (12-20220319-1+rpi1) ...
Setting up libmtdev1:armhf (1.1.6-1) ...
Setting up libvulkan1:armhf (1.3.204.1-2) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-4) ...
Setting up libmd0:armhf (1.0.4-1) ...
Setting up libxshmfence1:armhf (1.3-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libmpdec3:armhf (2.5.1-2+rpi1) ...
Setting up libmd4c0:armhf (0.4.8-1) ...
Setting up fonts-lmodern (2.005-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.10.0-3) ...
Setting up xorg-sgml-doctools (1:1.11-1.1) ...
Setting up libglu1-mesa:armhf (9.0.2-1) ...
Setting up libopengl-dev:armhf (1.4.0-1) ...
Setting up libjs-jquery (3.6.0+dfsg+~3.5.13-1) ...
Setting up python3.9-minimal (3.9.12-1+rpi1) ...
Setting up libbsd0:armhf (0.11.6-1) ...
Setting up libdrm-common (2.4.110-1+rpi1) ...
Setting up libelf1:armhf (0.186-1) ...
Setting up libevdev2:armhf (1.12.1+dfsg-1) ...
Setting up libicu-dev:armhf (67.1-7) ...
Setting up libxml2:armhf (2.9.13+dfsg-1) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up libbrotli-dev:armhf (1.0.9-2+b2) ...
Setting up libgudev-1.0-0:armhf (237-2) ...
Setting up libsz2:armhf (1.0.6-1) ...
Setting up libsynctex2:armhf (2021.20210626.59705-1) ...
Setting up libpython3.9-stdlib:armhf (3.9.12-1+rpi1) ...
Setting up libjs-underscore (1.13.2~dfsg-2) ...
Setting up libwacom-common (2.2.0-1) ...
Setting up libxkbcommon0:armhf (1.4.0-1) ...
Setting up libwayland-client0:armhf (1.20.0-1) ...
Setting up x11proto-dev (2021.5-1) ...
Setting up libfile-stripnondeterminism-perl (1.13.0-1) ...
Setting up libpaper1:armhf (1.1.28) ...
Creating config file /etc/papersize with new version
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.10.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.14-3) ...
Setting up gettext (0.21-6) ...
Setting up libxcb-xfixes0:armhf (1.14-3) ...
Setting up libxau-dev:armhf (1:1.0.9-1) ...
Setting up libxcb-xinput0:armhf (1.14-3) ...
Setting up libice-dev:armhf (2:1.0.10-1) ...
Setting up libtool (2.4.7-3) ...
Setting up libxcb-render0:armhf (1.14-3) ...
Setting up libwacom9:armhf (2.2.0-1) ...
Setting up fontconfig-config (2.13.1-4.4) ...
Setting up libxcb-glx0:armhf (1.14-3) ...
Setting up libedit2:armhf (3.1-20210910-1) ...
Setting up libpng-dev:armhf (1.6.37-3) ...
Setting up libxcb-keysyms1:armhf (0.4.0-1+b2) ...
Setting up libaec-dev:armhf (1.0.6-1) ...
Setting up libxcb-shape0:armhf (1.14-3) ...
Setting up libavahi-common3:armhf (0.8-5) ...
Setting up libjpeg-dev:armhf (1:2.1.2-1) ...
Setting up m4 (1.4.18-5) ...
Setting up libxcb-render-util0:armhf (0.3.9-1+b1) ...
Setting up libcurl3-gnutls:armhf (7.82.0-2) ...
Setting up libxcb-shm0:armhf (1.14-3) ...
Setting up libxcb-icccm4:armhf (0.4.1-1.1) ...
Setting up libpaper-utils (1.1.28) ...
Setting up libxcb-util1:armhf (0.4.0-1) ...
Setting up libinput-bin (1.20.0-1) ...
Setting up libxcb-xkb1:armhf (1.14-3) ...
Setting up libxcb-image0:armhf (0.4.0-2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libxcb-present0:armhf (1.14-3) ...
Setting up libpython3.10-stdlib:armhf (3.10.4-1) ...
Setting up tex-common (6.17) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up libxdmcp-dev:armhf (1:1.1.2-3) ...
Setting up libxml2-dev:armhf (2.9.13+dfsg-1) ...
Setting up libxcb-xinerama0:armhf (1.14-3) ...
Setting up libpython3.9:armhf (3.9.12-1+rpi1) ...
Setting up libptexenc1:armhf (2021.20210626.59705-1) ...
Setting up libfreetype6:armhf (2.11.1+dfsg-1) ...
Setting up libxcb-sync1:armhf (1.14-3) ...
Setting up shared-mime-info (2.1-2) ...
Setting up libxkbcommon-x11-0:armhf (1.4.0-1) ...
Setting up libllvm13:armhf (1:13.0.1-3+rpi1+b1) ...
Setting up libqt5core5a:armhf (5.15.2+dfsg-16+rpi1) ...
Setting up libjs-sphinxdoc (4.5.0-3) ...
Setting up autoconf (2.71-2) ...
Setting up libxcb-dri2-0:armhf (1.14-3) ...
Setting up dh-strip-nondeterminism (1.13.0-1) ...
Setting up libdrm2:armhf (2.4.110-1+rpi1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-8) ...
Setting up libqt5dbus5:armhf (5.15.2+dfsg-16+rpi1) ...
Setting up libxcb-randr0:armhf (1.14-3) ...
Setting up libcurl4:armhf (7.82.0-2) ...
Setting up libx11-6:armhf (2:1.7.5-1) ...
Setting up libharfbuzz0b:armhf (2.7.4-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.4) ...
Setting up libqt5test5:armhf (5.15.2+dfsg-16+rpi1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libavahi-client3:armhf (0.8-5) ...
Setting up python3.9 (3.9.12-1+rpi1) ...
Setting up libpython3-stdlib:armhf (3.10.4-1) ...
Setting up libdrm-amdgpu1:armhf (2.4.110-1+rpi1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libxcb-dri3-0:armhf (1.14-3) ...
Setting up libinput10:armhf (1.20.0-1) ...
Setting up libx11-xcb1:armhf (2:1.7.5-1) ...
Setting up libpython3.10:armhf (3.10.4-1) ...
Setting up fontconfig (2.13.1-4.4) ...
Regenerating fonts cache... done.
Setting up libdrm-nouveau2:armhf (2.4.110-1+rpi1) ...
Setting up libxcb1-dev:armhf (1.14-3) ...
Setting up python3.10 (3.10.4-1) ...
Setting up libxpm4:armhf (1:3.5.12-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libgbm1:armhf (21.3.8-1+rpi1) ...
Setting up libsm-dev:armhf (2:1.2.3-1) ...
Setting up libdrm-radeon1:armhf (2.4.110-1+rpi1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libgl1-mesa-dri:armhf (21.3.8-1+rpi1) ...
Setting up libx11-dev:armhf (2:1.7.5-1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libpython3.9-dev:armhf (3.9.12-1+rpi1) ...
Setting up python3 (3.10.4-1) ...
Setting up man-db (2.10.2-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libcairo2:armhf (1.16.0-5) ...
Setting up libqt5network5:armhf (5.15.2+dfsg-16+rpi1) ...
Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ...
Setting up libfreetype-dev:armhf (2.11.1+dfsg-1) ...
Setting up libqt5sql5:armhf (5.15.2+dfsg-16+rpi1) ...
Setting up dh-autoreconf (20) ...
Setting up libqt5xml5:armhf (5.15.2+dfsg-16+rpi1) ...
Setting up libegl-mesa0:armhf (21.3.8-1+rpi1) ...
Setting up libxfixes3:armhf (1:6.0.0-1) ...
Setting up libcurl4-openssl-dev:armhf (7.82.0-2) ...
Setting up libpython3.10-dev:armhf (3.10.4-1) ...
Setting up libxt6:armhf (1:1.2.1-1) ...
Setting up libxext-dev:armhf (2:1.3.4-1) ...
Setting up libcups2:armhf (2.4.1op1-2) ...
Setting up python3-pyqt5.sip (12.9.1-1+b1) ...
Setting up python3.10-dev (3.10.4-1) ...
Setting up libhdf5-103-1:armhf (1.10.7+repack-4+rpi1) ...
Setting up python3.9-dev (3.9.12-1+rpi1) ...
Setting up libhdf5-cpp-103-1:armhf (1.10.7+repack-4+rpi1) ...
Setting up libegl1:armhf (1.4.0-1) ...
Setting up python3-lib2to3 (3.9.12-1) ...
Setting up libhdf5-hl-100:armhf (1.10.7+repack-4+rpi1) ...
Setting up python3-pkg-resources (59.6.0-1.2) ...
Setting up python3-distutils (3.9.12-1) ...
Setting up dh-python (5.20220403) ...
Setting up libxmu6:armhf (2:1.1.3-3) ...
Setting up libglx-mesa0:armhf (21.3.8-1+rpi1) ...
Setting up libpython3-dev:armhf (3.10.4-1) ...
Setting up libxi6:armhf (2:1.8-1) ...
Setting up libglx0:armhf (1.4.0-1) ...
Setting up libqt5gui5:armhf (5.15.2+dfsg-16+rpi1) ...
Setting up python3-all (3.10.4-1) ...
Setting up debhelper (13.7) ...
Setting up libqt5widgets5:armhf (5.15.2+dfsg-16+rpi1) ...
Setting up libxaw7:armhf (2:1.0.14-1) ...
Setting up libqt5help5:armhf (5.15.2-5) ...
Setting up libfreetype6-dev:armhf (2.11.1+dfsg-1) ...
Setting up libqt5printsupport5:armhf (5.15.2+dfsg-16+rpi1) ...
Setting up libhdf5-hl-cpp-100:armhf (1.10.7+repack-4+rpi1) ...
Setting up libgl1:armhf (1.4.0-1) ...
Setting up libxt-dev:armhf (1:1.2.1-1) ...
Setting up libpython3-all-dev:armhf (3.10.4-1) ...
Setting up python3-dev (3.10.4-1) ...
Setting up libhdf5-fortran-102:armhf (1.10.7+repack-4+rpi1) ...
Setting up python3-numpy (1:1.21.5-1+b1) ...
Setting up libglew2.2:armhf (2.2.0-4) ...
Setting up libnetcdf19:armhf (1:4.8.1-1) ...
Setting up libqt5opengl5:armhf (5.15.2+dfsg-16+rpi1) ...
Setting up texlive-binaries (2021.20210626.59705-1) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up libhdf5-hl-fortran-100:armhf (1.10.7+repack-4+rpi1) ...
Setting up libglx-dev:armhf (1.4.0-1) ...
Setting up texlive-base (2021.20220204-1) ...
/usr/bin/ucfr
/usr/bin/ucfr
/usr/bin/ucfr
/usr/bin/ucfr
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
Setting up libgl-dev:armhf (1.4.0-1) ...
Setting up python3-all-dev (3.10.4-1) ...
Setting up freeglut3:armhf (2.8.1-6) ...
Setting up libqt5designer5:armhf (5.15.2-5) ...
Setting up libegl-dev:armhf (1.4.0-1) ...
Setting up python3-opengl (3.1.5+dfsg-1) ...
Setting up texlive-latex-base (2021.20220204-1) ...
Setting up libhdf5-dev (1.10.7+repack-4+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libglu1-mesa-dev:armhf (9.0.2-1) ...
Setting up libnetcdf-dev (1:4.8.1-1) ...
Setting up libgles-dev:armhf (1.4.0-1) ...
Setting up python3-pyqt5 (5.15.6+dfsg-1) ...
Setting up python3-pyqt5.qtopengl (5.15.6+dfsg-1) ...
Setting up libglvnd-dev:armhf (1.4.0-1) ...
Setting up libglew-dev:armhf (2.2.0-4) ...
Setting up libgl1-mesa-dev:armhf (21.3.8-1+rpi1) ...
Setting up freeglut3-dev:armhf (2.8.1-6) ...
Setting up sbuild-build-depends-pymol-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.33-7+rpi1) ...
Processing triggers for tex-common (6.17) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
This may take some time... done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-163-generic armhf (armv8l)
Toolchain package versions: binutils_2.38-3+rpi1 dpkg-dev_1.21.2+rpi1 g++-11_11.2.0-16+rpi1 gcc-11_11.2.0-16+rpi1 libc6-dev_2.33-7+rpi1 libstdc++-11-dev_11.2.0-16+rpi1 libstdc++6_12-20220319-1+rpi1 linux-libc-dev_5.16.14-1+rpi1
Package versions: adduser_3.120 apt_2.4.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.5.52 bash_5.1-6 binutils_2.38-3+rpi1 binutils-arm-linux-gnueabihf_2.38-3+rpi1 binutils-common_2.38-3+rpi1 bsdextrautils_2.38-4 bsdutils_1:2.37.3-1 build-essential_12.9 bzip2_1.0.8-5 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-16+rpi1 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.7 debianutils_5.7-0.1 dh-autoreconf_20 dh-python_5.20220403 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-3+b1 dpkg_1.21.2+rpi1 dpkg-dev_1.21.2+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.28-1 file_1:5.41-2 findutils_4.9.0-2 fontconfig_2.13.1-4.4 fontconfig-config_2.13.1-4.4 fonts-dejavu-core_2.37-2 fonts-lmodern_2.005-1 freeglut3_2.8.1-6 freeglut3-dev_2.8.1-6 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-16+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-16+rpi1 gcc-11-base_11.2.0-16+rpi1 gcc-12-base_12-20220319-1+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-6 gettext-base_0.21-6 gnupg_2.2.27-3 gnupg-l10n_2.2.27-3 gnupg-utils_2.2.27-3+b1 gpg_2.2.27-3+b1 gpg-agent_2.2.27-3+b1 gpg-wks-client_2.2.27-3+b1 gpg-wks-server_2.2.27-3+b1 gpgconf_2.2.27-3+b1 gpgsm_2.2.27-3+b1 gpgv_2.2.27-3+b1 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hdf5-helpers_1.10.7+repack-4+rpi1 hostname_3.23 icu-devtools_67.1-7 init-system-helpers_1.62 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libaec-dev_1.0.6-1 libaec0_1.0.6-1 libapt-pkg6.0_2.4.3 libarchive-zip-perl_1.68-1 libasan6_11.2.0-16+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-16+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libavahi-client3_0.8-5 libavahi-common-data_0.8-5 libavahi-common3_0.8-5 libbinutils_2.38-3+rpi1 libblas3_3.10.0-2 libblkid1_2.37.3-1 libbrotli-dev_1.0.9-2+b2 libbrotli1_1.0.9-2+b2 libbsd0_0.11.6-1 libbz2-1.0_1.0.8-5 libc-bin_2.33-7+rpi1 libc-dev-bin_2.33-7+rpi1 libc6_2.33-7+rpi1 libc6-dev_2.33-7+rpi1 libcairo2_1.16.0-5 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-16+rpi1 libcom-err2_1.46.5-2 libcrypt-dev_1:4.4.27-1.1 libcrypt1_1:4.4.27-1.1 libctf-nobfd0_2.38-3+rpi1 libctf0_2.38-3+rpi1 libcups2_2.4.1op1-2 libcurl3-gnutls_7.82.0-2 libcurl4_7.82.0-2 libcurl4-openssl-dev_7.82.0-2 libdb5.3_5.3.28+dfsg1-0.8 libdbus-1-3_1.14.0-1 libdebconfclient0_0.261 libdebhelper-perl_13.7 libdouble-conversion3_3.1.7-4 libdpkg-perl_1.21.2+rpi1 libdrm-amdgpu1_2.4.110-1+rpi1 libdrm-common_2.4.110-1+rpi1 libdrm-nouveau2_2.4.110-1+rpi1 libdrm-radeon1_2.4.110-1+rpi1 libdrm2_2.4.110-1+rpi1 libedit2_3.1-20210910-1 libegl-dev_1.4.0-1 libegl-mesa0_21.3.8-1+rpi1 libegl1_1.4.0-1 libelf1_0.186-1 libevdev2_1.12.1+dfsg-1 libexpat1_2.4.8-1 libexpat1-dev_2.4.8-1 libext2fs2_1.46.5-2 libfakeroot_1.28-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libfontconfig1_2.13.1-4.4 libfreetype-dev_2.11.1+dfsg-1 libfreetype6_2.11.1+dfsg-1 libfreetype6-dev_2.11.1+dfsg-1 libgbm1_21.3.8-1+rpi1 libgcc-11-dev_11.2.0-16+rpi1 libgcc-s1_11.2.0-16+rpi1 libgcrypt20_1.9.4-5 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgfortran5_12-20220319-1+rpi1 libgl-dev_1.4.0-1 libgl1_1.4.0-1 libgl1-mesa-dev_21.3.8-1+rpi1 libgl1-mesa-dri_21.3.8-1+rpi1 libglapi-mesa_21.3.8-1+rpi1 libgles-dev_1.4.0-1 libgles1_1.4.0-1 libgles2_1.4.0-1 libglew-dev_2.2.0-4 libglew2.2_2.2.0-4 libglib2.0-0_2.72.0-1 libglm-dev_0.9.9.8+ds-2 libglu1-mesa_9.0.2-1 libglu1-mesa-dev_9.0.2-1 libglvnd-core-dev_1.4.0-1 libglvnd-dev_1.4.0-1 libglvnd0_1.4.0-1 libglx-dev_1.4.0-1 libglx-mesa0_21.3.8-1+rpi1 libglx0_1.4.0-1 libgmp10_2:6.2.1+dfsg-3 libgnutls30_3.7.3-4 libgomp1_11.2.0-16+rpi1 libgpg-error0_1.43-3 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.19.2-2+b1 libgudev-1.0-0_237-2 libharfbuzz0b_2.7.4-1 libhdf5-103-1_1.10.7+repack-4+rpi1 libhdf5-cpp-103-1_1.10.7+repack-4+rpi1 libhdf5-dev_1.10.7+repack-4+rpi1 libhdf5-fortran-102_1.10.7+repack-4+rpi1 libhdf5-hl-100_1.10.7+repack-4+rpi1 libhdf5-hl-cpp-100_1.10.7+repack-4+rpi1 libhdf5-hl-fortran-100_1.10.7+repack-4+rpi1 libhogweed6_3.7.3-1 libice-dev_2:1.0.10-1 libice6_2:1.0.10-1 libicu-dev_67.1-7 libicu67_67.1-7 libidn2-0_2.3.2-2 libinput-bin_1.20.0-1 libinput10_1.20.0-1 libisl23_0.24-2 libjpeg-dev_1:2.1.2-1 libjpeg62-turbo_1:2.1.2-1 libjpeg62-turbo-dev_1:2.1.2-1 libjs-jquery_3.6.0+dfsg+~3.5.13-1 libjs-sphinxdoc_4.5.0-3 libjs-underscore_1.13.2~dfsg-2 libk5crypto3_1.19.2-2+b1 libkeyutils1_1.6.1-3+rpi1 libkpathsea6_2021.20210626.59705-1 libkrb5-3_1.19.2-2+b1 libkrb5support0_1.19.2-2+b1 libksba8_1.6.0-2 liblapack3_3.10.0-2 libldap-2.5-0_2.5.11+dfsg-1+rpi1 libllvm13_1:13.0.1-3+rpi1+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmd0_1.0.4-1 libmd4c0_0.4.8-1 libmount1_2.37.3-1 libmpc3_1.2.1-1 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libmtdev1_1.1.6-1 libncursesw6_6.3-2 libnetcdf-dev_1:4.8.1-1 libnetcdf19_1:4.8.1-1 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libopengl-dev_1.4.0-1 libopengl0_1.4.0-1 libp11-kit0_0.24.0-6 libpam-modules_1.4.0-11 libpam-modules-bin_1.4.0-11 libpam-runtime_1.4.0-11 libpam0g_1.4.0-11 libpaper-utils_1.1.28 libpaper1_1.1.28 libpcre2-16-0_10.39-4 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13 libperl5.34_5.34.0-3 libpipeline1_1.5.5-1 libpixman-1-0_0.40.0-1 libpng-dev_1.6.37-3 libpng16-16_1.6.37-3 libpsl5_0.21.0-1.2 libptexenc1_2021.20210626.59705-1 libpthread-stubs0-dev_0.4-1 libpython3-all-dev_3.10.4-1 libpython3-dev_3.10.4-1 libpython3-stdlib_3.10.4-1 libpython3.10_3.10.4-1 libpython3.10-dev_3.10.4-1 libpython3.10-minimal_3.10.4-1 libpython3.10-stdlib_3.10.4-1 libpython3.9_3.9.12-1+rpi1 libpython3.9-dev_3.9.12-1+rpi1 libpython3.9-minimal_3.9.12-1+rpi1 libpython3.9-stdlib_3.9.12-1+rpi1 libqt5core5a_5.15.2+dfsg-16+rpi1 libqt5dbus5_5.15.2+dfsg-16+rpi1 libqt5designer5_5.15.2-5 libqt5gui5_5.15.2+dfsg-16+rpi1 libqt5help5_5.15.2-5 libqt5network5_5.15.2+dfsg-16+rpi1 libqt5opengl5_5.15.2+dfsg-16+rpi1 libqt5printsupport5_5.15.2+dfsg-16+rpi1 libqt5sql5_5.15.2+dfsg-16+rpi1 libqt5test5_5.15.2+dfsg-16+rpi1 libqt5widgets5_5.15.2+dfsg-16+rpi1 libqt5xml5_5.15.2+dfsg-16+rpi1 libreadline8_8.1.2-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-2+b1 libsasl2-modules-db_2.1.28+dfsg-2+b1 libseccomp2_2.5.3-2+rpi1 libselinux1_3.3-1 libsemanage-common_3.3-1 libsemanage2_3.3-1 libsensors-config_1:3.6.0-7 libsensors5_1:3.6.0-7 libsepol1_3.1-1 libsepol2_3.3-1 libsigsegv2_2.14-1 libsm-dev_2:1.2.3-1 libsm6_2:1.2.3-1 libsmartcols1_2.38-4 libsqlite3-0_3.38.1-1 libss2_1.46.5-2 libssh2-1_1.10.0-3 libssl-dev_1.1.1n-1 libssl1.1_1.1.1n-1 libstdc++-11-dev_11.2.0-16+rpi1 libstdc++6_12-20220319-1+rpi1 libsub-override-perl_0.09-2 libsynctex2_2021.20210626.59705-1 libsystemd0_250.4-1+rpi1 libsz2_1.0.6-1 libtasn1-6_4.18.0-4 libteckit0_2.5.11+ds1-1 libtexlua53_2021.20210626.59705-1 libtexluajit2_2021.20210626.59705-1 libtinfo6_6.3-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.7-3 libubsan1_11.2.0-16+rpi1 libuchardet0_0.0.7-1 libudev1_250.4-1+rpi1 libunistring2_1.0-1 libuuid1_2.37.3-1 libvulkan1_1.3.204.1-2 libwacom-common_2.2.0-1 libwacom9_2.2.0-1 libwayland-client0_1.20.0-1 libwayland-server0_1.20.0-1 libx11-6_2:1.7.5-1 libx11-data_2:1.7.5-1 libx11-dev_2:1.7.5-1 libx11-xcb1_2:1.7.5-1 libxau-dev_1:1.0.9-1 libxau6_1:1.0.9-1 libxaw7_2:1.0.14-1 libxcb-dri2-0_1.14-3 libxcb-dri3-0_1.14-3 libxcb-glx0_1.14-3 libxcb-icccm4_0.4.1-1.1 libxcb-image0_0.4.0-2 libxcb-keysyms1_0.4.0-1+b2 libxcb-present0_1.14-3 libxcb-randr0_1.14-3 libxcb-render-util0_0.3.9-1+b1 libxcb-render0_1.14-3 libxcb-shape0_1.14-3 libxcb-shm0_1.14-3 libxcb-sync1_1.14-3 libxcb-util1_0.4.0-1 libxcb-xfixes0_1.14-3 libxcb-xinerama0_1.14-3 libxcb-xinput0_1.14-3 libxcb-xkb1_1.14-3 libxcb1_1.14-3 libxcb1-dev_1.14-3 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.4-1 libxext6_2:1.3.4-1 libxfixes3_1:6.0.0-1 libxi6_2:1.8-1 libxkbcommon-x11-0_1.4.0-1 libxkbcommon0_1.4.0-1 libxml2_2.9.13+dfsg-1 libxml2-dev_2.9.13+dfsg-1 libxmu6_2:1.1.3-3 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxshmfence1_1.3-1 libxt-dev_1:1.2.1-1 libxt6_1:1.2.1-1 libxxf86vm1_1:1.1.4-1+b2 libxxhash0_0.8.1-1 libz3-4_4.8.12-1 libzstd1_1.5.2+dfsg-1 libzzip-0-13_0.13.72+dfsg.1-1.1 linux-libc-dev_5.16.14-1+rpi1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.10.2-1 mawk_1.3.4.20200120-3 media-types_7.1.0 mount_2.37.3-1 ncurses-base_6.3-2 ncurses-bin_6.3-2 netbase_6.3 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-3 perl-base_5.34.0-3 perl-modules-5.34_5.34.0-3 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python3_3.10.4-1 python3-all_3.10.4-1 python3-all-dev_3.10.4-1 python3-dev_3.10.4-1 python3-distutils_3.9.12-1 python3-lib2to3_3.9.12-1 python3-minimal_3.10.4-1 python3-numpy_1:1.21.5-1+b1 python3-opengl_3.1.5+dfsg-1 python3-pkg-resources_59.6.0-1.2 python3-pyqt5_5.15.6+dfsg-1 python3-pyqt5.qtopengl_5.15.6+dfsg-1 python3-pyqt5.sip_12.9.1-1+b1 python3.10_3.10.4-1 python3.10-dev_3.10.4-1 python3.10-minimal_3.10.4-1 python3.9_3.9.12-1+rpi1 python3.9-dev_3.9.12-1+rpi1 python3.9-minimal_3.9.12-1+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pymol-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 shared-mime-info_2.1-2 sysvinit-utils_3.01-1 t1utils_1.41-4 tar_1.34+dfsg-1 tex-common_6.17 texlive-base_2021.20220204-1 texlive-binaries_2021.20210626.59705-1 texlive-latex-base_2021.20220204-1 tzdata_2021e-1 ucf_3.0043 util-linux_2.37.3-1 x11-common_1:7.7+23 x11proto-dev_2021.5-1 xdg-utils_1.1.3-4.1 xkb-data_2.35.1-1 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-4 zlib1g-dev_1:1.2.11.dfsg-4
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.8AeqgzCu/trustedkeys.kbx': General error
gpgv: Signature made Wed Dec 15 16:13:49 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./pymol_2.5.0+dfsg-1.dsc
dpkg-source: info: extracting pymol in /<<BUILDDIR>>/pymol-2.5.0+dfsg
dpkg-source: info: unpacking pymol_2.5.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking pymol_2.5.0+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 03_povray.patch
dpkg-source: info: applying 22_fix_pymol_import.patch
dpkg-source: info: applying 27_fix_pymol_path_in_setup.patch
dpkg-source: info: applying 28_no_data_install_in_python_path.patch
dpkg-source: info: applying 31_fix_format-security.patch
dpkg-source: info: applying 32_fix_spelling_lintian_warnings.patch
dpkg-source: info: applying 33_fix_relative_paths_in_example_scripts.patch
dpkg-source: info: applying 34_fix_examples_add_fetch_instead_of_load.patch
dpkg-source: info: applying 40_mstop_movies.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 2.5.0+dfsg-1+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-342aa001-5b7e-44a8-9bef-a5e83be0410c
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package pymol
dpkg-buildpackage: info: source version 2.5.0+dfsg-1+b1
dpkg-buildpackage: info: source distribution bookworm-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:239: python3.9 setup.py clean
running clean
removing '/<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
I: pybuild base:239: python3.10 setup.py clean
/<<BUILDDIR>>/pymol-2.5.0+dfsg/setup.py:9: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
from distutils.core import setup, Extension
running clean
removing '/<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.10' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
debian/rules override_dh_clean
make[1]: Entering directory '/<<BUILDDIR>>/pymol-2.5.0+dfsg'
rm -f -r build test/tmp test/cmp generated
dh_clean debian/pymol-ref-card.* \
Rules.make create_shadertext.pyc
make[1]: Leaving directory '/<<BUILDDIR>>/pymol-2.5.0+dfsg'
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:239: python3.9 setup.py config
running config
I: pybuild base:239: python3.10 setup.py config
/<<BUILDDIR>>/pymol-2.5.0+dfsg/setup.py:9: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
from distutils.core import setup, Extension
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:239: /usr/bin/python3.9 setup.py build
running build
running build_py
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/arc.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/bond_amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/bond_mmff.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/bonds.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/brick.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/cc1.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/charge.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/cif.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/cpv.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/dictdb.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/gamess1.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/gms.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/hetatm.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/io.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/lst.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/mae.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/map.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/mass.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/mmd.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/models.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/mol.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/mol2.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/neighbor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/pdb.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/pkl.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/place.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/protein.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/protein_amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/protein_amber99.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/protein_mmff.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/protein_residues.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/sdf.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/solvate.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/water_amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/water_residues.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/xyz.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
copying modules/chempy/bmin/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
copying modules/chempy/bmin/commands.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
copying modules/chempy/bmin/realtime.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
copying modules/chempy/bmin/state.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
copying modules/chempy/bmin/util.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ
copying modules/chempy/champ/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ
copying modules/chempy/champ/amber99.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ
copying modules/chempy/champ/assign.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ
copying modules/chempy/champ/formal_charges.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fast
copying modules/chempy/fast/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fast
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fragments
copying modules/chempy/fragments/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fragments
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf
copying modules/chempy/mmtf/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf
copying modules/chempy/mmtf/io.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
copying modules/chempy/tinker/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
copying modules/chempy/tinker/amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
copying modules/chempy/tinker/keyword.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
copying modules/chempy/tinker/realtime.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
copying modules/chempy/tinker/state.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/TextEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/advanced_settings_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/builder.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/file_dialogs.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/keymapping.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/mimic_pmg_tk.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/mimic_tk.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/properties_dialog.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/pymol_gl_widget.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/pymol_qt_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/shortcut_menu_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/volume.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax
copying modules/pmg_qt/syntax/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax
copying modules/pmg_qt/syntax/pml.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax
copying modules/pmg_qt/syntax/pmlparser.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax
copying modules/pmg_qt/syntax/python.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/ColorEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/Demo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/PMGApp.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/PyMOLMapLoad.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/SetEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/Setting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/TextEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/volume.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins
copying modules/pmg_tk/skins/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/demo
copying modules/pmg_tk/skins/demo/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/demo
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/ModalWindow.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/builder.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup
copying modules/pmg_tk/startup/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/__main__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/api.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/callback.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/cgo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/checking.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/cmd.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/colorprinting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/colorramping.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/commanding.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/completing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/computing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/constants.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/constants_palette.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/controlling.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/creating.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/diagnosing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/editing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/editor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/experimenting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/exporting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/externing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/feedingback.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/fitting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/headering.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/helping.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/importing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/internal.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/invocation.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/keyboard.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/keywords.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/lazyio.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/locking.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/menu.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/monitoring.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/morphing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/movie.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/moving.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/mpeg_encode.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/parser.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/parsing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/preset.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/pymolhttpd.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/querying.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/rpc.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/save_shortcut.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/selecting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/selector.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/seqalign.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/setting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/shortcut.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/shortcut_dict.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/shortcut_manager.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/util.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/vfont.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/viewing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/wizarding.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/xray.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/xwin.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/povray.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt
copying modules/pymol/Qt/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt
copying modules/pymol/Qt/utils.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/installation.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/legacysupport.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/managergui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/managergui_qt.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/repository.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/stereochemistry
copying modules/pymol/stereochemistry/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/stereochemistry
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/annotation.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/appearance.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/benchmark.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/box.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/charge.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/cleanup.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/command.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/demo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/density.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/distance.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/dragging.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/filter.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/label.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/measurement.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/message.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/mutagenesis.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/nucmutagenesis.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/openvr.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/pair_fit.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/pseudoatom.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/renaming.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/sculpting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/security.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/stereodemo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/toggle.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2
copying modules/pymol2/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2
copying modules/pymol2/cmd2.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2
copying modules/pmg_qt/forms/askpartial.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/change_confirm.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/colors.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/create_shortcut.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/fetch.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/help_shortcut.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_aln.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_mae.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_map.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_mtz.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_traj.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/movieexport.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/pluginitem.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/pluginmanager.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/png.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/props.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/render.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/save_molecule.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/save_object.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/shortcut_menu.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
running build_ext
building 'pymol._cmd' extension
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/build
creating build/temp.linux-armhf-3.9/build/generated
creating build/temp.linux-armhf-3.9/contrib
creating build/temp.linux-armhf-3.9/contrib/uiuc
creating build/temp.linux-armhf-3.9/contrib/uiuc/plugins
creating build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin
creating build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src
creating build/temp.linux-armhf-3.9/layer0
creating build/temp.linux-armhf-3.9/layer1
creating build/temp.linux-armhf-3.9/layer2
creating build/temp.linux-armhf-3.9/layer3
creating build/temp.linux-armhf-3.9/layer4
creating build/temp.linux-armhf-3.9/layer5
creating build/temp.linux-armhf-3.9/ov
creating build/temp.linux-armhf-3.9/ov/src
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD build/generated/ShaderText.cpp -o build/temp.linux-armhf-3.9/build/generated/ShaderText.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerInitAll':
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:271:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
271 | if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:273:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
273 | if(ok) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerFreeAll':
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:411:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
411 | if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:413:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
413 | return ok;
| ^~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function 'write_psf_structure':
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:782:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
782 | if (strlen(atoms[i].type) > fw) {
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: 'fortread_4' defined but not used [-Wunused-function]
103 | static int fortread_4(void *dest, int n, int swap, FILE *fd) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: 'fort_get_endian_reclen' defined but not used [-Wunused-function]
55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: 'fort_eat_recmark' defined but not used [-Wunused-function]
36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28,
from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'swap8_aligned' defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'swap2_aligned' defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'swap8_unaligned' defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'swap4_unaligned' defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function 'void* open_grid_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
84 | fread(&dataBegin, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_timestep(void*, int, molfile_timestep_t*)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
275 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
289 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_bonds_aux(void*, int*, int**, int**, float**)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
199 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
209 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
127 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
138 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'void* open_mol2_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
74 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
81 | fgets(line, LINESIZE, fd); // Read and ignore the mol_name
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
82 | fgets(line, LINESIZE, fd); // Read the molecule info
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
91 | fgets(line, LINESIZE, fd); // Read and ignore the mol_type
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
92 | fgets(line, LINESIZE, fd); // Read the charge_type
| ~~~~~^~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'abinit_readline':
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:279:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
279 | for (i = 0; i < strlen(line); ++i) {
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:70:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function 'int {anonymous}::ReadPARM::readparm(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
435 | fscanf(file, " " DBLFMT, &prm->Charges[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
444 | fscanf(file, " " DBLFMT, &prm->Masses[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
510 | fscanf(file, " " DBLFMT, &prm->Rk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
517 | fscanf(file, " " DBLFMT, &prm->Req[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
524 | fscanf(file, " " DBLFMT, &prm->Tk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
531 | fscanf(file, " " DBLFMT, &prm->Teq[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
538 | fscanf(file, " " DBLFMT, &prm->Pk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
545 | fscanf(file, " " DBLFMT, &prm->Pn[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
552 | fscanf(file, " " DBLFMT, &prm->Phase[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
559 | fscanf(file, " " DBLFMT, &prm->Solty[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
567 | fscanf(file, " " DBLFMT, &prm->Cn1[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
575 | fscanf(file, " " DBLFMT, &prm->Cn2[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
756 | fscanf(file, " " DBLFMT, &prm->HB12[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
763 | fscanf(file, " " DBLFMT, &prm->HB6[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
771 | fscanf(file, " " DBLFMT, &H[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:23: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
853 | fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
854 | &prm->Box[0], &prm->Box[1], &prm->Box[2]);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:23: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
867 | fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
868 | &prm->Natcap, &prm->Cutcap,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
869 | &prm->Xcap, &prm->Ycap, &prm->Zcap);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'int read_dsn6_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
233 | fread(brick, sizeof(char), 512, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'void* open_dsn6_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
91 | fread(fileHeader, sizeof(short), 19, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'int read_brix_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
247 | fread(brick, sizeof(char), 512, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'void* open_brix_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
79 | fscanf(fd, "%3s", keyWord);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
86 | fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
93 | fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
100 | fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
109 | fscanf(fd, " %s %f %f %f %f %f %f", keyWord,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
110 | &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
123 | fscanf(fd, " %s %f", keyWord, &prod);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
128 | fscanf(fd, " %s %f", keyWord, &plus);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
135 | fscanf(fd, " %s %f", keyWord, &sigma);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'angular_momentum_expon':
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function 'int mdio_readline(md_file*, char*, int, int)':
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
426 | fgets(buf, n, mf->f);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'read_molden_rundata':
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable 'hessian_data' set but not used [-Wunused-but-set-variable]
596 | molfile_qm_hessian_t *hessian_data;
| ^~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: 'whereami' defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: 'thisline' defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: 'have_keyline' defined but not used [-Wunused-function]
1006 | static int have_keyline(FILE *file, const char *keystring1,
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: 'symmetry_expand' defined but not used [-Wunused-function]
711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: 'print_matrix4' defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: 'del_wavefunction' defined but not used [-Wunused-function]
507 | static void del_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: 'replace_wavefunction' defined but not used [-Wunused-function]
490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
| ^~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:48:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: 'get_pte_vdw_radius' defined but not used [-Wunused-function]
109 | static float get_pte_vdw_radius(const int idx)
| ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: 'get_pte_mass' defined but not used [-Wunused-function]
102 | static float get_pte_mass(const int idx)
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'get_pte_label' defined but not used [-Wunused-function]
95 | static const char *get_pte_label(const int idx)
| ^~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: 'vasp_timestep_unitcell' defined but not used [-Wunused-function]
111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
| ^~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:34:
In function 'strncpy',
inlined from 'read_molden_structure' at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:350:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_molden_structure' at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:351:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_molden_structure' at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:317:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_molden_structure' at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:326:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 11 bytes from a string of length 1023 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure':
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=]
127 | sprintf(atom->resname, "%d", resid);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999]
127 | sprintf(atom->resname, "%d", resid);
| ^~~~
In file included from /usr/include/stdio.h:866,
from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 8
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'void* open_ccp4_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
304 | fgets(symData, 81, fd);
| ~~~~~^~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: 'vasp_timestep_unitcell' defined but not used [-Wunused-function]
111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
| ^~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function 'open_rst_read':
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable 'timesteprst' set but not used [-Wunused-but-set-variable]
48 | double timesteprst;
| ^~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'write_vaspposcar_timestep':
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to 'sizeof' in 'strncpy' call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess]
360 | strncpy(tmptype, atom->type, sizeof(atom->type));
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:40:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:32:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:23,
from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:31:
In function 'strncpy',
inlined from 'get_pdb_cryst1' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:119:3,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:277:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 80 bytes from a string of length 82 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:144:5,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 8 bytes from a string of length 52 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:149:5,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 8 bytes from a string of length 44 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:154:5,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 8 bytes from a string of length 36 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:299:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 70 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:304:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 1 byte from a string of length 66 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:308:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 65 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:317:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 60 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5,
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:326:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5,
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:326:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:330:5,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 10 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:339:5,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 2 bytes from a string of length 6 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'angular_momentum_expon':
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: 'whereami' defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: 'thisline' defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: 'fpexpftoc' defined but not used [-Wunused-function]
1028 | static int fpexpftoc(char *ftocstr) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: 'have_keyline' defined but not used [-Wunused-function]
1006 | static int have_keyline(FILE *file, const char *keystring1,
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:962:12: warning: 'goto_keyline' defined but not used [-Wunused-function]
962 | static int goto_keyline(FILE *file, ...) {
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: 'strtoupper' defined but not used [-Wunused-function]
901 | static char *strtoupper(char *s) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: 'iswhiteline' defined but not used [-Wunused-function]
895 | static int iswhiteline(char *s) {
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:846:13: warning: 'eatwhitelines' defined but not used [-Wunused-function]
846 | static void eatwhitelines(FILE *file) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:13: warning: 'eatline' defined but not used [-Wunused-function]
835 | static void eatline(FILE * fd, int n)
| ^~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: 'symmetry_expand' defined but not used [-Wunused-function]
711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: 'print_matrix4' defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:540:13: warning: 'angular_momentum_expon' defined but not used [-Wunused-function]
540 | static void angular_momentum_expon(int *ang_mom_expon,
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: 'del_wavefunction' defined but not used [-Wunused-function]
507 | static void del_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: 'replace_wavefunction' defined but not used [-Wunused-function]
490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
| ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:471:27: warning: 'add_wavefunction' defined but not used [-Wunused-function]
471 | static qm_wavefunction_t* add_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: 'init_qmdata' defined but not used [-Wunused-function]
437 | static qmdata_t* init_qmdata() {
| ^~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In function 'strncpy',
inlined from 'get_pdb_header' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:190:5,
inlined from 'open_pdb_read' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:79:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 9 bytes from a string of length 32 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_header' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:200:5,
inlined from 'open_pdb_read' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:79:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 20 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function 'int read_spider_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
286 | fread(datablock, total * sizeof(float), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void* open_cube_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
175 | fgets(readbuf, 1023, cube->fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
181 | fgets(readbuf, 1023, cube->fd); // skip second header line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
326 | fgets(readbuf, 1023, cube->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
337 | fgets(readbuf, 1023, cube->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
339 | fscanf(cube->fd, "%d", &cube->nsets);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
344 | fscanf(cube->fd, "%d", &orb);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
349 | fgets(readbuf, 1023, cube->fd); // gobble up rest of line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'int getUniqueResID(char*, int)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable 'i' [-Wunused-variable]
443 | int i, uid;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable 'j' [-Wunused-variable]
484 | int i, count, atomdata, pos, idx, xyzcount, j;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable 'oldChain' [-Wunused-variable]
503 | char oldChain[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readAngleBonds(molfile_atom_t*, pdbxParser*)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable 'bondTable' [-Wunused-variable]
803 | int bondTable[32];
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable 'j' [-Wunused-variable]
807 | int i, pos, j, k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable 'modelNum' [-Wunused-variable]
811 | char modelNum[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable 'atom' [-Wunused-variable]
822 | molfile_atom_t * atom;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable 'test' [-Wunused-variable]
884 | int test = parser->nbonds + bnum;
| ^~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readRMSDBonds(molfile_atom_t*, pdbxParser*)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable 'bondTable' [-Wunused-variable]
984 | int bondTable[32];
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable 'j' [-Wunused-variable]
988 | int i, pos, j, k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable 'modelNum' [-Wunused-variable]
991 | char modelNum[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable 'atom' [-Wunused-variable]
1002 | molfile_atom_t * atom;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'void* open_file_write(const char*, const char*, int)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable 'fd' [-Wunused-variable]
1409 | FILE* fd;
| ^~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
| ~~^ ~~
| | |
| long int fio_size_t {aka long long int}
| %lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
| ~~^ ~~~~
| | |
| long int fio_size_t {aka long long int}
| %lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~~~~~
| |
| fio_size_t {aka long long int}
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:47:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)':
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
96 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
104 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
119 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
131 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
153 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
162 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
171 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_timestep(void*, int, molfile_timestep_t*)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
243 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
252 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_bonds_aux(void*, int*, int**, int**, float**)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
328 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
346 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
355 | fgets(nextline, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
419 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
194 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
203 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'void* open_bgf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
59 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:89:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'swap8_unaligned' defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'swap4_unaligned' defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: 'fio_readv' defined but not used [-Wunused-function]
459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
| ^~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
| ~~^ ~~
| | |
| long int fio_size_t {aka long long int}
| %lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
| ~~^ ~~~~
| | |
| long int fio_size_t {aka long long int}
| %lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~~~~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdheader':
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:191:57: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
191 | } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:204:54: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
204 | if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:222:26: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
222 | if (input_integer[0] != dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:399:45: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
399 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:416:45: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
416 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdstep':
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:621:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
621 | if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT;
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:625:43: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
625 | if ((tmpbuf[2*i]+tmpbuf[2*i+1]) != sizeof(float)*N) return DCD_BADFORMAT;
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable 'readlen' set but not used [-Wunused-but-set-variable]
546 | fio_size_t readlen; /* number of bytes actually read */
| ^~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'swap2_aligned' defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:609:12: warning: 'fio_write_str' defined but not used [-Wunused-function]
609 | static int fio_write_str(fio_fd fd, const char *str) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:605:12: warning: 'fio_read_int32' defined but not used [-Wunused-function]
605 | static int fio_read_int32(fio_fd fd, int *i) {
| ^~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: 'fio_readv' defined but not used [-Wunused-function]
459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
| ^~~~~~~~~
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:41:
In function 'strncpy',
inlined from 'read_tinker_structure' at contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:103:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
102 | fread(&headersize, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:866,
from contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:29:
In function 'sprintf',
inlined from 'vtf_error' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:3,
inlined from 'vtf_read_bonds' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1203:5,
inlined from 'vtf_read_bonds' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1193:12:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:10: warning: '%s' directive argument is null [-Wformat-overflow=]
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:32:
In function 'strncat',
inlined from 'vtf_parse_atom' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:538:9,
inlined from 'vtf_parse_structure' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:812:24,
inlined from '_vtf_open_file_read' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:944:5,
inlined from 'vtf_open_file_read' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:970:10:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:135:10: warning: '__builtin___strncat_chk' output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
135 | return __builtin___strncat_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
136 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncat',
inlined from 'vtf_parse_atom' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:629:7,
inlined from 'vtf_parse_structure' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:812:24,
inlined from '_vtf_open_file_read' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:944:5,
inlined from 'vtf_open_file_read' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:970:10:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:135:10: warning: '__builtin___strncat_chk' output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
135 | return __builtin___strncat_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
136 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)':
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
91 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
116 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
132 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
149 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
155 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
161 | fgets(line, 80, infile); //one more read to keep us in sync
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
170 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
217 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
237 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
256 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)':
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
371 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
306 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Deferred.cpp -o build/temp.linux-armhf-3.9/layer0/Deferred.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Map.cpp -o build/temp.linux-armhf-3.9/layer0/Map.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_timestep(void*, int, molfile_timestep_t*)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
288 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
297 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
365 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
387 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
395 | fgets(nextline, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
455 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
241 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
250 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'void* open_xbgf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
72 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'void* open_plt_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
69 | fread(intHeader, sizeof(int), 5, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
82 | fread(floatHeader, sizeof(float), 6, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'read_next_timestep':
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable 'numatoms' set but not used [-Wunused-but-set-variable]
103 | int i, numatoms;
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'write_timestep':
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:206:55: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
206 | if (fwrite(tmp, sizeof(double), 3*n, namdbin->fd) != 3*n) {
| ^~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Err.cpp -o build/temp.linux-armhf-3.9/layer0/Err.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_structure':
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
292 | if (NULL == fgets(fbuffer, 1024, data->file))
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
295 | if (NULL == fgets(fbuffer, 1024, data->file))
| ^~
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function 'read_mmtk_cdf_structure':
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:730:15: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
730 | if (len > sizeof(name)) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function 'read_mmtk_cdf_timestep':
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:1060:16: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
1060 | for (i=0; i<(3 * mmtk->atom_numberdim); i++) {
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void put_element_ply(PlyFile*, void*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable 'i' [-Wunused-variable]
459 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void ascii_get_element(PlyFile*, char*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable 'i' [-Wunused-variable]
1407 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable 'i' [-Wunused-variable]
1541 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
1629 | fread (&len, sizeof(int), 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
1631 | fread (str, len, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void get_binary_item(FILE*, int, int*, unsigned int*, double*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2057 | fread (ptr, 1, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2063 | fread (ptr, 1, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2069 | fread (ptr, 2, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2075 | fread (ptr, 2, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2081 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2087 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2093 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2099 | fread (ptr, 8, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:34:
In function 'strncpy',
inlined from 'read_dlpoly_config_structure' at contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:362:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_dlpoly_structure' at contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:267:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'char* recreate_command_line(int, char**)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
1334 | line[0] = '\0';
| ~~~~~~~~^~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by 'malloc'
1333 | line = (char *) malloc (sizeof(char) * len);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/PostProcess.cpp -o build/temp.linux-armhf-3.9/layer0/PostProcess.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void eatline(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
238 | fgets(readbuf, 1024, fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void* open_xsf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
408 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
442 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
444 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
446 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
448 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
450 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
473 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
508 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/map:60,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:58:
/usr/include/c++/11/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >]':
/usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator' changed in GCC 7.1
2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/map:61,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:58:
/usr/include/c++/11/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = {anonymous}::Blob; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >]':
/usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Feedback.cpp -o build/temp.linux-armhf-3.9/layer0/Feedback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function 'int read_parm7_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
78 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
204 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
257 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_resnames(const char*, int, char*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
275 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
289 | fscanf(file, " %d", &cur);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'parmstruct* read_parm7_header(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
368 | fgets(sdum, 512, file);
| ~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
371 | fscanf(file, "%s\n", sdum); // "%FLAG"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
378 | fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
385 | fscanf(file, "%s\n", sdum); // "FORMAT (20a4)"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
399 | fgets(prm->title, sizeof(prm->title), file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
427 | fgets(sdum, sizeof(sdum), file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
439 | fscanf(file,parm7,
| ~~~~~~^~~~~~~~~~~~
440 | &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
441 | &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
442 | &prm->Jparm, &prm->Nparm);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
443 | fscanf(file, parm7,
| ~~~~~~^~~~~~~~~~~~~
444 | &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
445 | &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
446 | &prm->Natyp, &prm->Nphb);
| ~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
447 | fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
448 | &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
449 | &prm->IfBox, &prm->Nmxrs, &prm->IfCap);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
451 | fscanf(file,"%8d",&prm->Numextra); //BB
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int read_parm7_flag(FILE*, const char*, const char*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
79 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
87 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
97 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:53:
In function 'strncpy',
inlined from 'read_xyz_structure' at contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:133:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'void DDmkdir(const string&, mode_t, int, int)':
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:23: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
714 | sprintf(sub, "%03x/", i);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:22: note: directive argument in the range [0, 2147483646]
714 | sprintf(sub, "%03x/", i);
| ^~~~~~~
In file included from /usr/include/stdio.h:866,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 6
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:30: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
722 | sprintf(subsub, "%03x", j);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:29: note: directive argument in the range [0, 2147483646]
722 | sprintf(subsub, "%03x", j);
| ^~~~~~
In file included from /usr/include/stdio.h:866,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 4 and 9 bytes into a destination of size 6
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Block.cpp -o build/temp.linux-armhf-3.9/layer0/Block.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function 'int {anonymous}::write_structure(void*, int, const molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable 'last_ctnumber' [-Wunused-variable]
1904 | int last_ctnumber = -1;
| ^~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Util.cpp -o build/temp.linux-armhf-3.9/layer0/Util.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'get_atom_radius':
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable 'type' set but not used [-Wunused-but-set-variable]
166 | char *name, *type;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable 'name' set but not used [-Wunused-but-set-variable]
166 | char *name, *type;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'std::string framefile(const string&, size_t, size_t, int, int)':
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:35: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
675 | sprintf(answer, "%03x/", d1);
| ^
In file included from /usr/include/stdio.h:866,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 9
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:35: warning: '%03x' directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=]
673 | sprintf(answer, "%03x/%03x/", d1, d2);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:29: note: directive argument in the range [0, 2147483646]
673 | sprintf(answer, "%03x/%03x/", d1, d2);
| ^~~~~~~~~~~~
In file included from /usr/include/stdio.h:866,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 9 and 19 bytes into a destination of size 9
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:34:
In function 'strncpy',
inlined from 'get_pqr_cryst1' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:109:3,
inlined from 'read_pqr_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:319:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pqr_fields' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:137:3,
inlined from 'read_pqr_structure' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 68 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pqr_fields' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:138:3,
inlined from 'read_pqr_structure' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 63 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pqr_fields' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:139:3,
inlined from 'read_pqr_structure' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 1 byte from a string of length 59 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pqr_fields' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:140:3,
inlined from 'read_pqr_structure' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 58 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/ButMode.cpp -o build/temp.linux-armhf-3.9/layer1/ButMode.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Match.cpp -o build/temp.linux-armhf-3.9/layer0/Match.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/ShaderMgr.cpp -o build/temp.linux-armhf-3.9/layer0/ShaderMgr.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Field.cpp -o build/temp.linux-armhf-3.9/layer0/Field.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Util2.cpp -o build/temp.linux-armhf-3.9/layer0/Util2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/CarveHelper.cpp -o build/temp.linux-armhf-3.9/layer0/CarveHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Matrix.cpp -o build/temp.linux-armhf-3.9/layer0/Matrix.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/c++/11/map:61,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:58:
/usr/include/c++/11/bits/stl_map.h: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const':
/usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/ContourSurf.cpp -o build/temp.linux-armhf-3.9/layer0/ContourSurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Vector.cpp -o build/temp.linux-armhf-3.9/layer0/Vector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/File.cpp -o build/temp.linux-armhf-3.9/layer0/File.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/CGO.cpp -o build/temp.linux-armhf-3.9/layer1/CGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/GenericBuffer.cpp -o build/temp.linux-armhf-3.9/layer0/GenericBuffer.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Crystal.cpp -o build/temp.linux-armhf-3.9/layer0/Crystal.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Word.cpp -o build/temp.linux-armhf-3.9/layer0/Word.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/GraphicsUtil.cpp -o build/temp.linux-armhf-3.9/layer0/GraphicsUtil.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/MemoryDebug.cpp -o build/temp.linux-armhf-3.9/layer0/MemoryDebug.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'int read_edm_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
240 | fgets(readbuf, 13, edm->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'void eatline(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
44 | fgets(readbuf, 1024, fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUT.cpp -o build/temp.linux-armhf-3.9/layer1/FontGLUT.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/MemoryUsage.cpp -o build/temp.linux-armhf-3.9/layer0/MemoryUsage.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Isosurf.cpp -o build/temp.linux-armhf-3.9/layer0/Isosurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function 'void* open_fs4_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
79 | fread(&dataBegin, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/ccealignmodule.cpp -o build/temp.linux-armhf-3.9/layer0/ccealignmodule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer0/MemoryUsage.cpp: In function 'size_t pymol::memory_usage()':
layer0/MemoryUsage.cpp:38:21: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=]
38 | std::fscanf(fp, "%*zu%zu", &vmRSS);
| ^~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'angular_momentum_expon':
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'have_gamess':
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable 'word' set but not used [-Wunused-but-set-variable]
1106 | char word[3][BUFSIZ];
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_stats':
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable 'word' set but not used [-Wunused-but-set-variable]
2264 | char word[7][BUFSIZ];
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_wavefunction':
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable 'word' set but not used [-Wunused-but-set-variable]
3573 | char word[6][BUFSIZ];
| ^~~~
layer0/MemoryUsage.cpp:38:16: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
38 | std::fscanf(fp, "%*zu%zu", &vmRSS);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
At top level:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1002:13: warning: 'print_input_data' defined but not used [-Wunused-function]
1002 | static void print_input_data(qmdata_t *data) {
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: 'get_pte_vdw_radius' defined but not used [-Wunused-function]
109 | static float get_pte_vdw_radius(const int idx)
| ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: 'get_pte_mass' defined but not used [-Wunused-function]
102 | static float get_pte_mass(const int idx)
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'get_pte_label' defined but not used [-Wunused-function]
95 | static const char *get_pte_label(const int idx)
| ^~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: 'whereami' defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: 'thisline' defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: 'fpexpftoc' defined but not used [-Wunused-function]
1028 | static int fpexpftoc(char *ftocstr) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: 'strtoupper' defined but not used [-Wunused-function]
901 | static char *strtoupper(char *s) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: 'iswhiteline' defined but not used [-Wunused-function]
895 | static int iswhiteline(char *s) {
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: 'print_matrix4' defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/MyPNG.cpp -o build/temp.linux-armhf-3.9/layer0/MyPNG.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:155:
In function 'strncpy',
inlined from 'read_gamess_rundata' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:615:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_gamess_rundata' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:620:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 4096 bytes from a string of length 8191 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_gamess_rundata' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:621:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_gamess_rundata' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:622:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1618:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncat',
inlined from 'get_basis_options' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1422:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:135:10: warning: '__builtin___strncat_chk' output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
135 | return __builtin___strncat_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
136 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncat',
inlined from 'get_basis_options' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1411:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:135:10: warning: '__builtin___strncat_chk' output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
135 | return __builtin___strncat_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
136 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_fmoxyz' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1682:5,
inlined from 'get_input_structure' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1537:12:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Parse.cpp -o build/temp.linux-armhf-3.9/layer0/Parse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUT8x13.cpp -o build/temp.linux-armhf-3.9/layer1/FontGLUT8x13.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Pixmap.cpp -o build/temp.linux-armhf-3.9/layer0/Pixmap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In function 'strncpy',
inlined from 'get_proc_mem.isra' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1279:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 256 bytes from a string of length 8191 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_proc_mem.isra' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1272:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' specified bound 256 equals destination size [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_contrl' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1981:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' specified bound 8192 equals destination size [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUT9x15.cpp -o build/temp.linux-armhf-3.9/layer1/FontGLUT9x15.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In function 'strncpy',
inlined from 'get_contrl_firefly' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1818:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' specified bound 8192 equals destination size [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In function 'strncpy',
inlined from 'symmetry_expand' at contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:819:5,
inlined from 'get_traj_frame.constprop' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2931:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 10 bytes from a string of length 10 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Ortho.cpp -o build/temp.linux-armhf-3.9/layer1/Ortho.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUTHel10.cpp -o build/temp.linux-armhf-3.9/layer1/FontGLUTHel10.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)':
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
278 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
297 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
319 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
357 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
223 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
241 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'void* open_mdf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
164 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
176 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
183 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Scene.cpp -o build/temp.linux-armhf-3.9/layer1/Scene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUTHel12.cpp -o build/temp.linux-armhf-3.9/layer1/FontGLUTHel12.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/marching_cubes.cpp -o build/temp.linux-armhf-3.9/layer0/marching_cubes.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'void line3(FILE*, GRASSP*)':
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
186 | fread(line3, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)':
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro 'TRASH'
284 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
285 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro 'TRASH'
291 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro 'TRASH'
305 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
306 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro 'TRASH'
307 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro 'TRASH'
311 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro 'TRASH'
313 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro 'TRASH'
318 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
319 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro 'TRASH'
320 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro 'TRASH'
328 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
329 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro 'TRASH'
330 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro 'TRASH'
354 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
355 | fread(vertex, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro 'TRASH'
356 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro 'TRASH'
357 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
358 | fread(access, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro 'TRASH'
359 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro 'TRASH'
360 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
361 | fread(normal, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro 'TRASH'
362 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro 'TRASH'
371 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
372 | fread(triangle, 3 * sizeof(int), ntriangles, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro 'TRASH'
373 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro 'TRASH'
374 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
375 | fread(properties, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro 'TRASH'
394 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
395 | fread(striangle, sizeof(short), 3 * ntriangles, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro 'TRASH'
396 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro 'TRASH'
397 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
398 | fread(properties, sizeof(float), 3 * nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUTHel18.cpp -o build/temp.linux-armhf-3.9/layer1/FontGLUTHel18.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontType.cpp -o build/temp.linux-armhf-3.9/layer1/FontType.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Shaker.cpp -o build/temp.linux-armhf-3.9/layer1/Shaker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Wizard.cpp -o build/temp.linux-armhf-3.9/layer1/Wizard.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SymOp.cpp -o build/temp.linux-armhf-3.9/layer1/SymOp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/os_gl.cpp -o build/temp.linux-armhf-3.9/layer0/os_gl.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/ShaderPrg.cpp -o build/temp.linux-armhf-3.9/layer0/ShaderPrg.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer1/SymOp.cpp: In member function 'std::string pymol::SymOp::to_string() const':
layer1/SymOp.cpp:37:32: warning: '%d' directive output may be truncated writing between 1 and 4 bytes into a region of size between 0 and 5 [-Wformat-truncation=]
37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5);
| ^~
layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5);
| ^~~~~~~~~~~
layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
In file included from /usr/include/stdio.h:866,
from /usr/include/c++/11/cstdio:42,
from /usr/include/c++/11/ext/string_conversions.h:43,
from /usr/include/c++/11/bits/basic_string.h:6608,
from /usr/include/c++/11/string:55,
from layer1/SymOp.h:9,
from layer1/SymOp.cpp:7:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 6 and 17 bytes into a destination of size 8
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SymOpPConv.cpp -o build/temp.linux-armhf-3.9/layer1/SymOpPConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Basis.cpp -o build/temp.linux-armhf-3.9/layer1/Basis.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Movie.cpp -o build/temp.linux-armhf-3.9/layer1/Movie.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SymOpTools.cpp -o build/temp.linux-armhf-3.9/layer1/SymOpTools.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer1/Wizard.cpp: In member function 'virtual int CWizard::release(int, int, int, int)':
layer1/Wizard.cpp:571:18: warning: unused variable 'wiz' [-Wunused-variable]
571 | if (auto wiz = WizardGet(G)) {
| ^~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/P.cpp -o build/temp.linux-armhf-3.9/layer1/P.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Symmetry.cpp -o build/temp.linux-armhf-3.9/layer1/Symmetry.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/AssemblyHelpers.cpp -o build/temp.linux-armhf-3.9/layer2/AssemblyHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Sphere.cpp -o build/temp.linux-armhf-3.9/layer0/Sphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/DistSet.cpp -o build/temp.linux-armhf-3.9/layer2/DistSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Tetsurf.cpp -o build/temp.linux-armhf-3.9/layer0/Tetsurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Text.cpp -o build/temp.linux-armhf-3.9/layer1/Text.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/AtomInfo.cpp -o build/temp.linux-armhf-3.9/layer2/AtomInfo.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SceneMouse.cpp -o build/temp.linux-armhf-3.9/layer1/SceneMouse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/PConv.cpp -o build/temp.linux-armhf-3.9/layer1/PConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectCGO.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectCGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/GadgetSet.cpp -o build/temp.linux-armhf-3.9/layer2/GadgetSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Picking.cpp -o build/temp.linux-armhf-3.9/layer1/Picking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Texture.cpp -o build/temp.linux-armhf-3.9/layer0/Texture.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer1/SceneMouse.cpp: In function 'void SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, const NamedPicking&, int, bool)':
layer1/SceneMouse.cpp:455:32: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 237 [-Wformat-truncation=]
455 | " You clicked %s -> (%s)\n", buffer.c_str(), name ENDFB(G);
| ^~ ~~~~
In file included from /usr/include/stdio.h:866,
from /usr/include/c++/11/cstdio:42,
from /usr/include/c++/11/ext/string_conversions.h:43,
from /usr/include/c++/11/bits/basic_string.h:6608,
from /usr/include/c++/11/string:55,
from /usr/include/c++/11/bits/locale_classes.h:40,
from /usr/include/c++/11/bits/ios_base.h:41,
from /usr/include/c++/11/ios:42,
from /usr/include/c++/11/ostream:38,
from include/pymol/zstring_view.h:12,
from layer1/SceneMouse.h:4,
from layer1/SceneMouse.cpp:1:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output 21 or more bytes (assuming 276) into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Pop.cpp -o build/temp.linux-armhf-3.9/layer1/Pop.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/AtomInfoHistory.cpp -o build/temp.linux-armhf-3.9/layer2/AtomInfoHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectCallback.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectCallback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/HydrogenAdder.cpp -o build/temp.linux-armhf-3.9/layer2/HydrogenAdder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/PyMOLObject.cpp -o build/temp.linux-armhf-3.9/layer1/PyMOLObject.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/ScenePicking.cpp -o build/temp.linux-armhf-3.9/layer1/ScenePicking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Tracker.cpp -o build/temp.linux-armhf-3.9/layer0/Tracker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectDist.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectDist.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Triangle.cpp -o build/temp.linux-armhf-3.9/layer0/Triangle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/MmodTyping.cpp -o build/temp.linux-armhf-3.9/layer2/MmodTyping.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SceneRay.cpp -o build/temp.linux-armhf-3.9/layer1/SceneRay.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/MmtfMoleculeReader.cpp -o build/temp.linux-armhf-3.9/layer2/MmtfMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/c++/11/vector:72,
from layer1/Picking.h:9,
from layer0/Base.h:23,
from layer1/PyMOLObject.h:23,
from layer1/PyMOLObject.cpp:24:
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:67,
from layer1/Picking.h:9,
from layer0/Base.h:23,
from layer1/PyMOLObject.h:23,
from layer1/PyMOLObject.cpp:24:
/usr/include/c++/11/bits/stl_vector.h: In function 'int ObjectStateFromPyList(PyMOLGlobals*, PyObject*, CObjectState*)':
/usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Ray.cpp -o build/temp.linux-armhf-3.9/layer1/Ray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/BondTypeHistory.cpp -o build/temp.linux-armhf-3.9/layer2/BondTypeHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/Mol2Typing.cpp -o build/temp.linux-armhf-3.9/layer2/Mol2Typing.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/CifFile.cpp -o build/temp.linux-armhf-3.9/layer2/CifFile.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMolecule.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectMolecule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/MolV3000.cpp -o build/temp.linux-armhf-3.9/layer2/MolV3000.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectGadget.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectGadget.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SceneRender.cpp -o build/temp.linux-armhf-3.9/layer1/SceneRender.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectAlignment.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectAlignment.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer1/Ray.cpp: In function 'void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)':
layer1/Ray.cpp:1535:20: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=]
1535 | "%s"
| ^~
......
1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
| ~~~~~~~~
layer1/Ray.cpp:1530:18: note: 'sprintf' output between 116 and 3302 bytes into a destination of size 1024
1530 | sprintf(buffer,
| ~~~~~~~^~~~~~~~
1531 | "Transform {\n"
| ~~~~~~~~~~~~~~~
1532 | " translation %8.6f %8.6f %8.6f\n"
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1533 | " rotation %8.6f %8.6f %8.6f %8.6f\n"
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1534 | " children [\n"
| ~~~~~~~~~~~~~~~
1535 | "%s"
| ~~~~
1536 | " ]\n"
| ~~~~~~
1537 | "}\n",
| ~~~~~~
1538 | vert2[0] - mid[0],
| ~~~~~~~~~~~~~~~~~~
1539 | vert2[1] - mid[1],
| ~~~~~~~~~~~~~~~~~~
1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectGadgetRamp.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectGadgetRamp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/CifMoleculeReader.cpp -o build/temp.linux-armhf-3.9/layer2/CifMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/COLLADA.cpp -o build/temp.linux-armhf-3.9/layer1/COLLADA.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/ScrollBar.cpp -o build/temp.linux-armhf-3.9/layer1/ScrollBar.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMolecule.cpp: In function 'CoordSet* ObjectMoleculeMOLStr2CoordSet.constprop(PyMOLGlobals*, const char*, AtomInfoType**, const char**)':
layer2/ObjectMolecule.cpp:7579:37: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=]
7579 | " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G)
| ^~ ~~~~~~~
In file included from layer1/Ortho.h:32,
from layer2/ObjectMolecule.cpp:31:
layer0/Feedback.h:274:15: note: 'snprintf' output between 34 and 289 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMolecule.cpp:7578:3: note: in expansion of macro 'PRINTFB'
7578 | PRINTFB(G, FB_ObjectMolecule, FB_Blather)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Seq.cpp -o build/temp.linux-armhf-3.9/layer1/Seq.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectGroup.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectGroup.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepCylBond.cpp -o build/temp.linux-armhf-3.9/layer2/RepCylBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Character.cpp -o build/temp.linux-armhf-3.9/layer1/Character.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMap.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectMap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Rep.cpp -o build/temp.linux-armhf-3.9/layer1/Rep.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMolecule.cpp: In member function 'virtual void ObjectMolecule::update()':
layer2/ObjectMolecule.cpp:10605:82: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=]
10605 | " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer2/ObjectMolecule.cpp:31:
layer0/Feedback.h:274:15: note: 'snprintf' output between 68 and 333 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMolecule.cpp:10604:13: note: in expansion of macro 'PRINTFB'
10604 | PRINTFB(G, FB_ObjectMolecule, FB_Blather)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/TypeFace.cpp -o build/temp.linux-armhf-3.9/layer1/TypeFace.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMolecule.cpp: In function 'int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, const float*, int, int)':
layer2/ObjectMolecule.cpp:10731:43: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=]
10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ^~
10732 | buffer, v[0], v[1], v[2], state + 1, mode, 0);
| ~~~~~~
layer2/ObjectMolecule.cpp:10731:21: note: directive argument in the range [-2147483647, 2147483647]
10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp:10731:14: note: 'sprintf' output between 78 and 2036 bytes into a destination of size 1024
10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
10732 | buffer, v[0], v[1], v[2], state + 1, mode, 0);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/View.cpp -o build/temp.linux-armhf-3.9/layer1/View.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Color.cpp -o build/temp.linux-armhf-3.9/layer1/Color.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Setting.cpp -o build/temp.linux-armhf-3.9/layer1/Setting.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepNonbonded.cpp -o build/temp.linux-armhf-3.9/layer2/RepNonbonded.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDihedral.cpp -o build/temp.linux-armhf-3.9/layer2/RepDihedral.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/Sculpt.cpp -o build/temp.linux-armhf-3.9/layer2/Sculpt.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepNonbondedSphere.cpp -o build/temp.linux-armhf-3.9/layer2/RepNonbondedSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDistDash.cpp -o build/temp.linux-armhf-3.9/layer2/RepDistDash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMap.cpp: In function 'void ObjectMapDump(const ObjectMap*, const char*, int, int)':
layer2/ObjectMap.cpp:5982:24: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 239 [-Wformat-truncation=]
5982 | " ObjectMapDump: %s written to %s\n", om->Name, fname ENDFB(om->G);
| ^~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.9/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output 30 or more bytes (assuming 285) into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepRibbon.cpp -o build/temp.linux-armhf-3.9/layer2/RepRibbon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMolecule2.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectMolecule2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/CoordSet.cpp -o build/temp.linux-armhf-3.9/layer2/CoordSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDistLabel.cpp -o build/temp.linux-armhf-3.9/layer2/RepDistLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/SculptCache.cpp -o build/temp.linux-armhf-3.9/layer2/SculptCache.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)':
layer2/ObjectMap.cpp:2961:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2961 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.9/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:2970:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2970 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.9/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:2976:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2976 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.9/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:3058:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
3058 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.9/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/SideChainHelper.cpp -o build/temp.linux-armhf-3.9/layer2/SideChainHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSphere.cpp -o build/temp.linux-armhf-3.9/layer2/RepSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMap.cpp: In function 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)':
layer2/ObjectMap.cpp:4290:18: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
4290 | " ObjectMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.9/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:4290:18: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
4290 | " ObjectMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.9/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDot.cpp -o build/temp.linux-armhf-3.9/layer2/RepDot.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/VFont.cpp -o build/temp.linux-armhf-3.9/layer2/VFont.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/ExecutivePython.cpp -o build/temp.linux-armhf-3.9/layer3/ExecutivePython.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMesh.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMolecule2.cpp: In function 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, const float*, int, int, int, int)':
layer2/ObjectMolecule2.cpp:335:27: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
335 | " ObjMol: created %s/%s/%s/%s`%d%c/%s\n",
| ^~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.9/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMolecule2.cpp:24:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 26 and 291 bytes into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSphereGenerate.cpp -o build/temp.linux-armhf-3.9/layer2/RepSphereGenerate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/AtomIterators.cpp -o build/temp.linux-armhf-3.9/layer3/AtomIterators.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepEllipsoid.cpp -o build/temp.linux-armhf-3.9/layer2/RepEllipsoid.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Control.cpp -o build/temp.linux-armhf-3.9/layer1/Control.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSphereImmediate.cpp -o build/temp.linux-armhf-3.9/layer2/RepSphereImmediate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/CifDataValueFormatter.cpp -o build/temp.linux-armhf-3.9/layer3/CifDataValueFormatter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMolecule3.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectMolecule3.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/MaeExportHelpers.cpp -o build/temp.linux-armhf-3.9/layer3/MaeExportHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Editor.cpp -o build/temp.linux-armhf-3.9/layer3/Editor.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMesh.cpp: In member function 'virtual void ObjectMesh::update()':
layer2/ObjectMesh.cpp:502:41: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=]
502 | "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectMesh.cpp:33:
layer0/Feedback.h:274:15: note: 'snprintf' output between 50 and 305 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:501:9: note: in expansion of macro 'PRINTFB'
501 | PRINTFB(I->G, FB_ObjectMesh, FB_Errors)
| ^~~~~~~
layer2/ObjectMesh.cpp:535:40: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=]
535 | " ObjectMesh: updating \"%s\".\n", I->Name ENDFB(G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectMesh.cpp:33:
layer0/Feedback.h:274:15: note: 'snprintf' output between 27 and 282 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:534:13: note: in expansion of macro 'PRINTFB'
534 | PRINTFB(G, FB_ObjectMesh, FB_Details)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepLabel.cpp -o build/temp.linux-armhf-3.9/layer2/RepLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMesh.cpp: In function 'void ObjectMeshDump(ObjectMesh*, const char*, int, int)':
layer2/ObjectMesh.cpp:329:27: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
329 | " ObjectMeshDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectMesh.cpp:33:
layer0/Feedback.h:274:15: note: 'snprintf' output 31 or more bytes (assuming 286) into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:328:7: note: in expansion of macro 'PRINTFB'
328 | PRINTFB(I->G, FB_ObjectMesh, FB_Actions)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSurface.cpp -o build/temp.linux-armhf-3.9/layer2/RepSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectSlice.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectSlice.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Extrude.cpp -o build/temp.linux-armhf-3.9/layer1/Extrude.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/SelectorTmp.cpp -o build/temp.linux-armhf-3.9/layer3/SelectorTmp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/MoleculeExporter.cpp -o build/temp.linux-armhf-3.9/layer3/MoleculeExporter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Editor.cpp: In function 'void EditorPrepareDrag(PyMOLGlobals*, pymol::CObject*, int, int, int, int)':
layer3/Editor.cpp:1933:29: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
1933 | " Editor: grabbing (%s).", name ENDFB(G);
| ^~ ~~~~
In file included from layer1/Ortho.h:32,
from layer1/ButMode.h:20,
from layer3/Editor.cpp:28:
layer0/Feedback.h:274:15: note: 'snprintf' output between 22 and 277 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Editor.cpp:1932:7: note: in expansion of macro 'PRINTFB'
1932 | PRINTFB(G, FB_Editor, FB_Blather)
| ^~~~~~~
layer3/Editor.cpp: In function 'void EditorDefineExtraPks(PyMOLGlobals*)':
layer3/Editor.cpp:335:29: warning: '%s' directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=]
335 | sprintf(buffer, "(byres %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:335:12: note: 'sprintf' output between 9 and 264 bytes into a destination of size 256
335 | sprintf(buffer, "(byres %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:337:31: warning: '%s' directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=]
337 | sprintf(buffer, "(bychain %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:337:12: note: 'sprintf' output between 11 and 266 bytes into a destination of size 256
337 | sprintf(buffer, "(bychain %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:339:32: warning: '%s' directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=]
339 | sprintf(buffer, "(byobject %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:339:12: note: 'sprintf' output between 12 and 267 bytes into a destination of size 256
339 | sprintf(buffer, "(byobject %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepMesh.cpp -o build/temp.linux-armhf-3.9/layer2/RepMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectSlice.cpp: In member function 'virtual void ObjectSlice::update()':
layer2/ObjectSlice.cpp:639:42: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=]
639 | "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSlice.cpp:34:
layer0/Feedback.h:274:15: note: 'snprintf' output between 51 and 306 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSlice.cpp:638:9: note: in expansion of macro 'PRINTFB'
638 | PRINTFB(I->G, FB_ObjectSlice, FB_Errors)
| ^~~~~~~
layer2/ObjectSlice.cpp:650:39: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=]
650 | " ObjectSlice: updating \"%s\".\n", I->Name ENDFB(I->G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSlice.cpp:34:
layer0/Feedback.h:274:15: note: 'snprintf' output between 28 and 283 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSlice.cpp:649:11: note: in expansion of macro 'PRINTFB'
649 | PRINTFB(I->G, FB_ObjectSlice, FB_Blather)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/SpecRec.cpp -o build/temp.linux-armhf-3.9/layer3/SpecRec.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectSurface.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Font.cpp -o build/temp.linux-armhf-3.9/layer1/Font.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Executive.cpp -o build/temp.linux-armhf-3.9/layer3/Executive.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/SpecRecSpecial.cpp -o build/temp.linux-armhf-3.9/layer3/SpecRecSpecial.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer5/main.cpp -o build/temp.linux-armhf-3.9/layer5/main.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer4/Cmd.cpp -o build/temp.linux-armhf-3.9/layer4/Cmd.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/ov_utility.cpp -o build/temp.linux-armhf-3.9/ov/src/ov_utility.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVContext.cpp -o build/temp.linux-armhf-3.9/ov/src/OVContext.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVHeap.cpp -o build/temp.linux-armhf-3.9/ov/src/OVHeap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVHeapArray.cpp -o build/temp.linux-armhf-3.9/ov/src/OVHeapArray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVLexicon.cpp -o build/temp.linux-armhf-3.9/ov/src/OVLexicon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)':
layer2/ObjectSurface.cpp:268:30: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
268 | " ObjectSurfaceDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSurface.cpp:35:
layer0/Feedback.h:274:15: note: 'snprintf' output 34 or more bytes (assuming 289) into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSurface.cpp:267:7: note: in expansion of macro 'PRINTFB'
267 | PRINTFB(I->G, FB_ObjectSurface, FB_Actions)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVOneToAny.cpp -o build/temp.linux-armhf-3.9/ov/src/OVOneToAny.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/MovieScene.cpp -o build/temp.linux-armhf-3.9/layer3/MovieScene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVOneToOne.cpp -o build/temp.linux-armhf-3.9/ov/src/OVOneToOne.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectSurface.cpp: In member function 'virtual void ObjectSurface::update()':
layer2/ObjectSurface.cpp:493:43: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
493 | " ObjectSurface: updating \"%s\".\n", I->Name ENDFB(I->G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSurface.cpp:35:
layer0/Feedback.h:274:15: note: 'snprintf' output between 30 and 285 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSurface.cpp:492:13: note: in expansion of macro 'PRINTFB'
492 | PRINTFB(I->G, FB_ObjectSurface, FB_Details)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVRandom.cpp -o build/temp.linux-armhf-3.9/ov/src/OVRandom.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectVolume.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectVolume.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepWireBond.cpp -o build/temp.linux-armhf-3.9/layer2/RepWireBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectVolume.cpp: In function 'ObjectMapState* ObjectVolumeStateGetMapState(ObjectVolumeState*)':
layer2/ObjectVolume.cpp:74:33: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
74 | "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName
| ^~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.9/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectVolume.cpp:20:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)':
layer3/Executive.cpp:9007:58: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=]
9007 | " Remove: eliminated %d atoms in model \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 42 and 307 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9006:15: note: in expansion of macro 'PRINTFB'
9006 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)':
layer3/Executive.cpp:11424:28: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11424 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~
11425 | name, nSet, obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11424:17: note: directive argument in the range [1, 2147483647]
11424 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 42 and 560 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11423:15: note: in expansion of macro 'PRINTF'
11423 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function 'PyObject* ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, const char*, int, int, int)':
layer3/Executive.cpp:11505:26: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11505 | " Getting: %s for %d bonds in object \"%s\".\n",
| ^~
11506 | name, nSet, obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11505:15: note: directive argument in the range [1, 2147483647]
11505 | " Getting: %s for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 38 and 556 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11504:13: note: in expansion of macro 'PRINTF'
11504 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)':
layer3/Executive.cpp:11605:62: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 217 [-Wformat-truncation=]
11605 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 42 or more bytes (assuming 306) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11604:17: note: in expansion of macro 'PRINTF'
11604 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function 'int ExecutiveUnsetBondSetting(PyMOLGlobals*, int, const char*, const char*, int, int, int)':
layer3/Executive.cpp:11684:26: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11684 | " Setting: %s unset for %d bonds in object \"%s\".\n",
| ^~
11685 | name, nSet, rec->obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11684:15: note: directive argument in the range [1, 2147483647]
11684 | " Setting: %s unset for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 44 and 562 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11683:13: note: in expansion of macro 'PRINTF'
11683 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, const char*, pymol::CObject*, int, int, int)':
layer3/Executive.cpp:12226:30: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12226 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
12227 | name, value2, obj->Name, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12226:19: note: directive argument in the range [1, 2147483647]
12226 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 43 and 1584 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12225:17: note: in expansion of macro 'PRINTF'
12225 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12218:30: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12218 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
12219 | name, value2, obj->Name ENDF(G);
| ~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 34 and 1566 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12217:17: note: in expansion of macro 'PRINTF'
12217 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12197:29: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12197 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~ ~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 21 and 1298 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12197:11: note: in expansion of macro 'PRINTF'
12197 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)':
layer3/Executive.cpp:12129:36: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12129 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
12130 | name, op.i4, rec->obj->Name ENDF(G);
| ~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 42 and 561 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12128:23: note: in expansion of macro 'PRINTF'
12128 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12097:32: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12097 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~
12098 | name, value2, nObj, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12097:21: note: directive argument in the range [1, 2147483647]
12097 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12097:21: note: directive argument in the range [1, 2147483647]
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 43 and 1338 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12096:19: note: in expansion of macro 'PRINTF'
12096 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12094:32: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12094 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
| ^~ ~~~~
layer3/Executive.cpp:12094:21: note: directive argument in the range [1, 2147483647]
12094 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 34 and 1320 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12093:19: note: in expansion of macro 'PRINTF'
12093 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12161:36: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12161 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
12162 | name, value2, rec->obj->Name, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12161:25: note: directive argument in the range [1, 2147483647]
12161 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 43 and 1584 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12160:23: note: in expansion of macro 'PRINTF'
12160 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12153:36: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12153 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
12154 | name, value2, rec->obj->Name ENDF(G);
| ~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 34 and 1566 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12152:23: note: in expansion of macro 'PRINTF'
12152 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12057:29: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12057 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~ ~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 21 and 1298 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12057:11: note: in expansion of macro 'PRINTF'
12057 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepAngle.cpp -o build/temp.linux-armhf-3.9/layer2/RepAngle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/PlugIOManager.cpp -o build/temp.linux-armhf-3.9/layer3/PlugIOManager.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Executive.cpp: In function 'bool ExecutiveSetSymmetry(PyMOLGlobals*, pymol::zstring_view, int, const CSymmetry&, bool)':
layer3/Executive.cpp:5951:43: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 202 [-Wformat-truncation=]
5951 | " %s-Details: Updated symmetry for '%s'\n", __func__, obj->Name ENDFB(G);
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 56 and 311 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5950:7: note: in expansion of macro 'PRINTFB'
5950 | PRINTFB(G, FB_Executive, FB_Details)
| ^~~~~~~
layer3/Executive.cpp:5942:46: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=]
5942 | " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__,
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 84 and 339 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5941:7: note: in expansion of macro 'PRINTFB'
5941 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
In file included from /usr/include/c++/11/vector:72,
from layer0/MemoryDebug.h:21,
from layer4/Cmd.cpp:53:
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In function 'PyObject* CmdCifGetArray(PyObject*, PyObject*)':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepCartoon.cpp -o build/temp.linux-armhf-3.9/layer2/RepCartoon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int, pymol::zstring_view)':
layer3/Executive.cpp:9358:53: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=]
9358 | " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 35 and 300 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9357:17: note: in expansion of macro 'PRINTFB'
9357 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp:9371:67: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=]
9371 | " Valence: %d bond valences adjusted in model \"%s\".\n", cnt,
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 49 and 314 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9370:17: note: in expansion of macro 'PRINTFB'
9370 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp:9383:59: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=]
9383 | " Unbond: %d bonds removed from model \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 41 and 306 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9382:17: note: in expansion of macro 'PRINTFB'
9382 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/PlugIOManager.cpp: In function 'pymol::CObject* PlugIOManagerLoad(PyMOLGlobals*, pymol::CObject**, const char*, int, int, const char*, int)':
layer3/PlugIOManager.cpp:946:65: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=]
946 | " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G);
| ^~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.9/Python.h:25,
from layer0/os_python.h:34,
from layer3/PlugIOManager.cpp:20:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 58 and 313 bytes into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer4/Menu.cpp -o build/temp.linux-armhf-3.9/layer4/Menu.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/RingFinder.cpp -o build/temp.linux-armhf-3.9/layer3/RingFinder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer4/PopUp.cpp -o build/temp.linux-armhf-3.9/layer4/PopUp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, pymol::zstring_view, int, int, int)':
layer3/Executive.cpp:11877:70: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=]
11877 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 42 or more bytes (assuming 297) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11876:25: note: in expansion of macro 'PRINTF'
11876 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11877:70: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=]
11877 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 42 or more bytes (assuming 297) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11876:25: note: in expansion of macro 'PRINTF'
11876 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11788:42: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11788 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~
11789 | name, value, nObj, state + 1 ENDF(G);
| ~~~~~
layer3/Executive.cpp:11788:21: note: directive argument in the range [1, 2147483647]
11788 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:11788:21: note: directive argument in the range [1, 2147483647]
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 43 or more bytes (assuming 1084) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11787:19: note: in expansion of macro 'PRINTF'
11787 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11785:42: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11785 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
| ^~ ~~~~~
layer3/Executive.cpp:11785:21: note: directive argument in the range [1, 2147483647]
11785 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 34 or more bytes (assuming 1066) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11784:19: note: in expansion of macro 'PRINTF'
11784 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11909:46: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11909 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
11910 | name, value, rec->obj->Name, state + 1 ENDF(G);
| ~~~~~
layer3/Executive.cpp:11909:25: note: directive argument in the range [1, 2147483647]
11909 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 43 or more bytes (assuming 1330) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11908:23: note: in expansion of macro 'PRINTF'
11908 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11902:46: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11902 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
11903 | name, value, rec->obj->Name ENDF(G);
| ~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 34 or more bytes (assuming 1312) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11901:23: note: in expansion of macro 'PRINTF'
11901 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11744:39: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11744 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G);
| ^~ ~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 21 or more bytes (assuming 1044) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11744:11: note: in expansion of macro 'PRINTF'
11744 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G);
| ^~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Seeker.cpp -o build/temp.linux-armhf-3.9/layer3/Seeker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Executive.cpp: In function 'void ExecutiveManageObject(PyMOLGlobals*, pymol::CObject*, int, int)':
layer3/Executive.cpp:14447:37: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
14447 | " Executive-Warning: name \"%s\" collides with a selection language keyword.\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 73 and 328 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:14446:7: note: in expansion of macro 'PRINTFB'
14446 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp:14442:36: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
14442 | " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 61 and 316 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:14441:7: note: in expansion of macro 'PRINTFB'
14441 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp:14473:11: warning: 'char* strcpy(char*, const char*)' writing between 1 and 256 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=]
14473 | strcpy(rec->name, obj->Name);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveCopy(PyMOLGlobals*, const char*, const char*, int)':
layer3/Executive.cpp:9665:25: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
9665 | " Executive: object %s created.\n", oDst->Name ENDFB(G);
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 30 and 285 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9664:3: note: in expansion of macro 'PRINTFB'
9664 | PRINTFB(G, FB_Executive, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp: In function 'void ExecutiveManageSelection(PyMOLGlobals*, const char*)':
layer3/Executive.cpp:14559:11: warning: 'char* strcpy(char*, const char*)' writing 1 or more bytes into a region of size 0 overflows the destination [-Wstringop-overflow=]
14559 | strcpy(rec->name, name);
| ~~~~~~^~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In member function 'virtual int CExecutive::drag(int, int, int)':
layer3/Executive.cpp:15471:55: warning: '%s' directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=]
15471 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
| ^~
15472 | order_input, (location == -2) ? "upper" : "current");
| ~~~~~~~~~~~
layer3/Executive.cpp:15471:26: note: 'sprintf' output between 32 and 1057 bytes into a destination of size 1024
15471 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
15472 | order_input, (location == -2) ? "upper" : "current");
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveUnsetSetting(PyMOLGlobals*, int, pymol::zstring_view, int, int, int)':
layer3/Executive.cpp:12338:68: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=]
12338 | " Setting: %s unset for %d atoms in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 44 or more bytes (assuming 299) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12337:21: note: in expansion of macro 'PRINTF'
12337 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12360:57: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12360 | " Setting: %s unset in object \"%s\", state %d.\n",
| ^~
layer3/Executive.cpp:12360:25: note: directive argument in the range [1, 2147483647]
12360 | " Setting: %s unset in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 41 or more bytes (assuming 305) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12359:23: note: in expansion of macro 'PRINTF'
12359 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12354:57: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12354 | " Setting: %s unset in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 32 or more bytes (assuming 287) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12353:23: note: in expansion of macro 'PRINTF'
12353 | PRINTF
| ^~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer5/PyMOL.cpp -o build/temp.linux-armhf-3.9/layer5/PyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Executive.cpp: In function 'int ExecutiveGroup(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, int, int)':
layer3/Executive.cpp:2259:40: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
2259 | " Executive: adding '%s' to group '%s'.\n", rec.name, rec.group_name
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 36 and 546 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:2258:17: note: in expansion of macro 'PRINTFB'
2258 | PRINTFB(G, FB_Executive, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp: In function 'pymol::Result<std::vector<DiscardedRec> > ExecutiveSetName(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, bool)':
layer3/Executive.cpp:3523:41: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 222 [-Wformat-truncation=]
3523 | " Warning: Invalid characters in '%s' have been replaced or stripped\n",
| ^~
3524 | name ENDFB(G);
| ~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 67 and 322 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:3522:5: note: in expansion of macro 'PRINTFB'
3522 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)':
layer3/Executive.cpp:5070:57: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=]
5070 | " Executive: skipping unrecognized object \"%s\" of type %d.\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 56 and 321 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5069:11: note: in expansion of macro 'PRINTFB'
5069 | PRINTFB(G, FB_Executive, FB_Errors)
| ^~~~~~~
layer3/Executive.cpp:5095:58: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=]
5095 | "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G);
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 49 and 304 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5094:9: note: in expansion of macro 'PRINTFB'
5094 | PRINTFB(G, FB_Executive, FB_Errors)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Selector.cpp -o build/temp.linux-armhf-3.9/layer3/Selector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer5/TestPyMOL.cpp -o build/temp.linux-armhf-3.9/layer5/TestPyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Selector.cpp: In function 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)':
layer3/Selector.cpp:1722:70: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=]
1722 | " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n",
| ^~
In file included from /usr/include/stdio.h:866,
from /usr/include/c++/11/cstdio:42,
from /usr/include/c++/11/ext/string_conversions.h:43,
from /usr/include/c++/11/bits/basic_string.h:6608,
from /usr/include/c++/11/string:55,
from layer3/Selector.cpp:20:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 59 and 324 bytes into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/build/generated/ShaderText.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-armhf-3.9/layer0/Block.o build/temp.linux-armhf-3.9/layer0/CarveHelper.o build/temp.linux-armhf-3.9/layer0/ContourSurf.o build/temp.linux-armhf-3.9/layer0/Crystal.o build/temp.linux-armhf-3.9/layer0/Deferred.o build/temp.linux-armhf-3.9/layer0/Err.o build/temp.linux-armhf-3.9/layer0/Feedback.o build/temp.linux-armhf-3.9/layer0/Field.o build/temp.linux-armhf-3.9/layer0/File.o build/temp.linux-armhf-3.9/layer0/GenericBuffer.o build/temp.linux-armhf-3.9/layer0/GraphicsUtil.o build/temp.linux-armhf-3.9/layer0/Isosurf.o build/temp.linux-armhf-3.9/layer0/Map.o build/temp.linux-armhf-3.9/layer0/Match.o build/temp.linux-armhf-3.9/layer0/Matrix.o build/temp.linux-armhf-3.9/layer0/MemoryDebug.o build/temp.linux-armhf-3.9/layer0/MemoryUsage.o build/temp.linux-armhf-3.9/layer0/MyPNG.o build/temp.linux-armhf-3.9/layer0/Parse.o build/temp.linux-armhf-3.9/layer0/Pixmap.o build/temp.linux-armhf-3.9/layer0/PostProcess.o build/temp.linux-armhf-3.9/layer0/ShaderMgr.o build/temp.linux-armhf-3.9/layer0/ShaderPrg.o build/temp.linux-armhf-3.9/layer0/Sphere.o build/temp.linux-armhf-3.9/layer0/Tetsurf.o build/temp.linux-armhf-3.9/layer0/Texture.o build/temp.linux-armhf-3.9/layer0/Tracker.o build/temp.linux-armhf-3.9/layer0/Triangle.o build/temp.linux-armhf-3.9/layer0/Util.o build/temp.linux-armhf-3.9/layer0/Util2.o build/temp.linux-armhf-3.9/layer0/Vector.o build/temp.linux-armhf-3.9/layer0/Word.o build/temp.linux-armhf-3.9/layer0/ccealignmodule.o build/temp.linux-armhf-3.9/layer0/marching_cubes.o build/temp.linux-armhf-3.9/layer0/os_gl.o build/temp.linux-armhf-3.9/layer1/Basis.o build/temp.linux-armhf-3.9/layer1/ButMode.o build/temp.linux-armhf-3.9/layer1/CGO.o build/temp.linux-armhf-3.9/layer1/COLLADA.o build/temp.linux-armhf-3.9/layer1/Character.o build/temp.linux-armhf-3.9/layer1/Color.o build/temp.linux-armhf-3.9/layer1/Control.o build/temp.linux-armhf-3.9/layer1/Extrude.o build/temp.linux-armhf-3.9/layer1/Font.o build/temp.linux-armhf-3.9/layer1/FontGLUT.o build/temp.linux-armhf-3.9/layer1/FontGLUT8x13.o build/temp.linux-armhf-3.9/layer1/FontGLUT9x15.o build/temp.linux-armhf-3.9/layer1/FontGLUTHel10.o build/temp.linux-armhf-3.9/layer1/FontGLUTHel12.o build/temp.linux-armhf-3.9/layer1/FontGLUTHel18.o build/temp.linux-armhf-3.9/layer1/FontType.o build/temp.linux-armhf-3.9/layer1/Movie.o build/temp.linux-armhf-3.9/layer1/Ortho.o build/temp.linux-armhf-3.9/layer1/P.o build/temp.linux-armhf-3.9/layer1/PConv.o build/temp.linux-armhf-3.9/layer1/Picking.o build/temp.linux-armhf-3.9/layer1/Pop.o build/temp.linux-armhf-3.9/layer1/PyMOLObject.o build/temp.linux-armhf-3.9/layer1/Ray.o build/temp.linux-armhf-3.9/layer1/Rep.o build/temp.linux-armhf-3.9/layer1/Scene.o build/temp.linux-armhf-3.9/layer1/SceneMouse.o build/temp.linux-armhf-3.9/layer1/ScenePicking.o build/temp.linux-armhf-3.9/layer1/SceneRay.o build/temp.linux-armhf-3.9/layer1/SceneRender.o build/temp.linux-armhf-3.9/layer1/ScrollBar.o build/temp.linux-armhf-3.9/layer1/Seq.o build/temp.linux-armhf-3.9/layer1/Setting.o build/temp.linux-armhf-3.9/layer1/Shaker.o build/temp.linux-armhf-3.9/layer1/SymOp.o build/temp.linux-armhf-3.9/layer1/SymOpPConv.o build/temp.linux-armhf-3.9/layer1/SymOpTools.o build/temp.linux-armhf-3.9/layer1/Symmetry.o build/temp.linux-armhf-3.9/layer1/Text.o build/temp.linux-armhf-3.9/layer1/TypeFace.o build/temp.linux-armhf-3.9/layer1/View.o build/temp.linux-armhf-3.9/layer1/Wizard.o build/temp.linux-armhf-3.9/layer2/AssemblyHelpers.o build/temp.linux-armhf-3.9/layer2/AtomInfo.o build/temp.linux-armhf-3.9/layer2/AtomInfoHistory.o build/temp.linux-armhf-3.9/layer2/BondTypeHistory.o build/temp.linux-armhf-3.9/layer2/CifFile.o build/temp.linux-armhf-3.9/layer2/CifMoleculeReader.o build/temp.linux-armhf-3.9/layer2/CoordSet.o build/temp.linux-armhf-3.9/layer2/DistSet.o build/temp.linux-armhf-3.9/layer2/GadgetSet.o build/temp.linux-armhf-3.9/layer2/HydrogenAdder.o build/temp.linux-armhf-3.9/layer2/MmodTyping.o build/temp.linux-armhf-3.9/layer2/MmtfMoleculeReader.o build/temp.linux-armhf-3.9/layer2/Mol2Typing.o build/temp.linux-armhf-3.9/layer2/MolV3000.o build/temp.linux-armhf-3.9/layer2/ObjectAlignment.o build/temp.linux-armhf-3.9/layer2/ObjectCGO.o build/temp.linux-armhf-3.9/layer2/ObjectCallback.o build/temp.linux-armhf-3.9/layer2/ObjectDist.o build/temp.linux-armhf-3.9/layer2/ObjectGadget.o build/temp.linux-armhf-3.9/layer2/ObjectGadgetRamp.o build/temp.linux-armhf-3.9/layer2/ObjectGroup.o build/temp.linux-armhf-3.9/layer2/ObjectMap.o build/temp.linux-armhf-3.9/layer2/ObjectMesh.o build/temp.linux-armhf-3.9/layer2/ObjectMolecule.o build/temp.linux-armhf-3.9/layer2/ObjectMolecule2.o build/temp.linux-armhf-3.9/layer2/ObjectMolecule3.o build/temp.linux-armhf-3.9/layer2/ObjectSlice.o build/temp.linux-armhf-3.9/layer2/ObjectSurface.o build/temp.linux-armhf-3.9/layer2/ObjectVolume.o build/temp.linux-armhf-3.9/layer2/RepAngle.o build/temp.linux-armhf-3.9/layer2/RepCartoon.o build/temp.linux-armhf-3.9/layer2/RepCylBond.o build/temp.linux-armhf-3.9/layer2/RepDihedral.o build/temp.linux-armhf-3.9/layer2/RepDistDash.o build/temp.linux-armhf-3.9/layer2/RepDistLabel.o build/temp.linux-armhf-3.9/layer2/RepDot.o build/temp.linux-armhf-3.9/layer2/RepEllipsoid.o build/temp.linux-armhf-3.9/layer2/RepLabel.o build/temp.linux-armhf-3.9/layer2/RepMesh.o build/temp.linux-armhf-3.9/layer2/RepNonbonded.o build/temp.linux-armhf-3.9/layer2/RepNonbondedSphere.o build/temp.linux-armhf-3.9/layer2/RepRibbon.o build/temp.linux-armhf-3.9/layer2/RepSphere.o build/temp.linux-armhf-3.9/layer2/RepSphereGenerate.o build/temp.linux-armhf-3.9/layer2/RepSphereImmediate.o build/temp.linux-armhf-3.9/layer2/RepSurface.o build/temp.linux-armhf-3.9/layer2/RepWireBond.o build/temp.linux-armhf-3.9/layer2/Sculpt.o build/temp.linux-armhf-3.9/layer2/SculptCache.o build/temp.linux-armhf-3.9/layer2/SideChainHelper.o build/temp.linux-armhf-3.9/layer2/VFont.o build/temp.linux-armhf-3.9/layer3/AtomIterators.o build/temp.linux-armhf-3.9/layer3/CifDataValueFormatter.o build/temp.linux-armhf-3.9/layer3/Editor.o build/temp.linux-armhf-3.9/layer3/Executive.o build/temp.linux-armhf-3.9/layer3/ExecutivePython.o build/temp.linux-armhf-3.9/layer3/MaeExportHelpers.o build/temp.linux-armhf-3.9/layer3/MoleculeExporter.o build/temp.linux-armhf-3.9/layer3/MovieScene.o build/temp.linux-armhf-3.9/layer3/PlugIOManager.o build/temp.linux-armhf-3.9/layer3/RingFinder.o build/temp.linux-armhf-3.9/layer3/Seeker.o build/temp.linux-armhf-3.9/layer3/Selector.o build/temp.linux-armhf-3.9/layer3/SelectorTmp.o build/temp.linux-armhf-3.9/layer3/SpecRec.o build/temp.linux-armhf-3.9/layer3/SpecRecSpecial.o build/temp.linux-armhf-3.9/layer4/Cmd.o build/temp.linux-armhf-3.9/layer4/Menu.o build/temp.linux-armhf-3.9/layer4/PopUp.o build/temp.linux-armhf-3.9/layer5/PyMOL.o build/temp.linux-armhf-3.9/layer5/TestPyMOL.o build/temp.linux-armhf-3.9/layer5/main.o build/temp.linux-armhf-3.9/ov/src/OVContext.o build/temp.linux-armhf-3.9/ov/src/OVHeap.o build/temp.linux-armhf-3.9/ov/src/OVHeapArray.o build/temp.linux-armhf-3.9/ov/src/OVLexicon.o build/temp.linux-armhf-3.9/ov/src/OVOneToAny.o build/temp.linux-armhf-3.9/ov/src/OVOneToOne.o build/temp.linux-armhf-3.9/ov/src/OVRandom.o build/temp.linux-armhf-3.9/ov/src/ov_utility.o -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -o /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/_cmd.cpython-39-arm-linux-gnueabihf.so -fopenmp
building 'chempy.champ._champ' extension
creating build/temp.linux-armhf-3.9/contrib/champ
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/champ.c -o build/temp.linux-armhf-3.9/contrib/champ/champ.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/champ_module.c -o build/temp.linux-armhf-3.9/contrib/champ/champ_module.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/chiral.c -o build/temp.linux-armhf-3.9/contrib/champ/chiral.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/err2.c -o build/temp.linux-armhf-3.9/contrib/champ/err2.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/list.c -o build/temp.linux-armhf-3.9/contrib/champ/list.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/os_memory.c -o build/temp.linux-armhf-3.9/contrib/champ/os_memory.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/feedback2.c -o build/temp.linux-armhf-3.9/contrib/champ/feedback2.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/sort.c -o build/temp.linux-armhf-3.9/contrib/champ/sort.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/strblock.c -o build/temp.linux-armhf-3.9/contrib/champ/strblock.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/vla.c -o build/temp.linux-armhf-3.9/contrib/champ/vla.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/contrib/champ/champ.o build/temp.linux-armhf-3.9/contrib/champ/champ_module.o build/temp.linux-armhf-3.9/contrib/champ/chiral.o build/temp.linux-armhf-3.9/contrib/champ/err2.o build/temp.linux-armhf-3.9/contrib/champ/feedback2.o build/temp.linux-armhf-3.9/contrib/champ/list.o build/temp.linux-armhf-3.9/contrib/champ/os_memory.o build/temp.linux-armhf-3.9/contrib/champ/sort.o build/temp.linux-armhf-3.9/contrib/champ/strblock.o build/temp.linux-armhf-3.9/contrib/champ/vla.o -o /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/_champ.cpython-39-arm-linux-gnueabihf.so
I: pybuild base:239: /usr/bin/python3 setup.py build
/<<BUILDDIR>>/pymol-2.5.0+dfsg/setup.py:9: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
from distutils.core import setup, Extension
running build
running build_py
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/arc.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/bond_amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/bond_mmff.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/bonds.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/brick.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/cc1.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/charge.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/cif.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/cpv.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/dictdb.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/gamess1.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/gms.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/hetatm.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/io.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/lst.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/mae.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/map.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/mass.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/mmd.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/models.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/mol.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/mol2.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/neighbor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/pdb.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/pkl.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/place.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/protein.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/protein_amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/protein_amber99.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/protein_mmff.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/protein_residues.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/sdf.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/solvate.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/water_amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/water_residues.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
copying modules/chempy/xyz.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bmin
copying modules/chempy/bmin/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bmin
copying modules/chempy/bmin/commands.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bmin
copying modules/chempy/bmin/realtime.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bmin
copying modules/chempy/bmin/state.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bmin
copying modules/chempy/bmin/util.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bmin
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/champ
copying modules/chempy/champ/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/champ
copying modules/chempy/champ/amber99.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/champ
copying modules/chempy/champ/assign.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/champ
copying modules/chempy/champ/formal_charges.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/champ
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/fast
copying modules/chempy/fast/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/fast
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/fragments
copying modules/chempy/fragments/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/fragments
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/mmtf
copying modules/chempy/mmtf/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/mmtf
copying modules/chempy/mmtf/io.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/mmtf
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/tinker
copying modules/chempy/tinker/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/tinker
copying modules/chempy/tinker/amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/tinker
copying modules/chempy/tinker/keyword.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/tinker
copying modules/chempy/tinker/realtime.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/tinker
copying modules/chempy/tinker/state.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/tinker
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt
copying modules/pmg_qt/TextEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt
copying modules/pmg_qt/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt
copying modules/pmg_qt/advanced_settings_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt
copying modules/pmg_qt/builder.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt
copying modules/pmg_qt/file_dialogs.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt
copying modules/pmg_qt/keymapping.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt
copying modules/pmg_qt/mimic_pmg_tk.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt
copying modules/pmg_qt/mimic_tk.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt
copying modules/pmg_qt/properties_dialog.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt
copying modules/pmg_qt/pymol_gl_widget.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt
copying modules/pmg_qt/pymol_qt_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt
copying modules/pmg_qt/shortcut_menu_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt
copying modules/pmg_qt/volume.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/syntax
copying modules/pmg_qt/syntax/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/syntax
copying modules/pmg_qt/syntax/pml.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/syntax
copying modules/pmg_qt/syntax/pmlparser.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/syntax
copying modules/pmg_qt/syntax/python.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/syntax
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk
copying modules/pmg_tk/ColorEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk
copying modules/pmg_tk/Demo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk
copying modules/pmg_tk/PMGApp.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk
copying modules/pmg_tk/PyMOLMapLoad.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk
copying modules/pmg_tk/SetEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk
copying modules/pmg_tk/Setting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk
copying modules/pmg_tk/TextEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk
copying modules/pmg_tk/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk
copying modules/pmg_tk/volume.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins
copying modules/pmg_tk/skins/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins/demo
copying modules/pmg_tk/skins/demo/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins/demo
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/ModalWindow.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/builder.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins/normal
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/startup
copying modules/pmg_tk/startup/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/startup
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/__main__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/api.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/callback.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/cgo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/checking.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/cmd.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/colorprinting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/colorramping.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/commanding.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/completing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/computing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/constants.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/constants_palette.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/controlling.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/creating.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/diagnosing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/editing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/editor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/experimenting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/exporting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/externing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/feedingback.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/fitting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/headering.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/helping.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/importing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/internal.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/invocation.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/keyboard.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/keywords.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/lazyio.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/locking.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/menu.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/monitoring.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/morphing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/movie.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/moving.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/mpeg_encode.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/parser.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/parsing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/preset.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/pymolhttpd.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/querying.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/rpc.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/save_shortcut.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/selecting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/selector.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/seqalign.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/setting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/shortcut.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/shortcut_dict.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/shortcut_manager.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/util.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/vfont.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/viewing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/wizarding.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/xray.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/xwin.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/povray.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
copying modules/pymol/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/Qt
copying modules/pymol/Qt/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/Qt
copying modules/pymol/Qt/utils.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/Qt
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins
copying modules/pymol/plugins/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins
copying modules/pymol/plugins/installation.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins
copying modules/pymol/plugins/legacysupport.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins
copying modules/pymol/plugins/managergui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins
copying modules/pymol/plugins/managergui_qt.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins
copying modules/pymol/plugins/repository.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/stereochemistry
copying modules/pymol/stereochemistry/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/stereochemistry
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/annotation.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/appearance.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/benchmark.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/box.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/charge.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/cleanup.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/command.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/demo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/density.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/distance.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/dragging.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/filter.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/label.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/measurement.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/message.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/mutagenesis.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/nucmutagenesis.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/openvr.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/pair_fit.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/pseudoatom.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/renaming.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/sculpting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/security.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/stereodemo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
copying modules/pymol/wizard/toggle.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol2
copying modules/pymol2/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol2
copying modules/pymol2/cmd2.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol2
copying modules/pmg_qt/forms/askpartial.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/change_confirm.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/colors.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/create_shortcut.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/fetch.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/help_shortcut.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_aln.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_mae.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_map.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_mtz.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_traj.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/movieexport.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/pluginitem.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/pluginmanager.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/png.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/props.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/render.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/save_molecule.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/save_object.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/shortcut_menu.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms
running build_ext
building 'pymol._cmd' extension
creating build/temp.linux-armhf-3.10
creating build/temp.linux-armhf-3.10/build
creating build/temp.linux-armhf-3.10/build/generated
creating build/temp.linux-armhf-3.10/contrib
creating build/temp.linux-armhf-3.10/contrib/uiuc
creating build/temp.linux-armhf-3.10/contrib/uiuc/plugins
creating build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin
creating build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src
creating build/temp.linux-armhf-3.10/layer0
creating build/temp.linux-armhf-3.10/layer1
creating build/temp.linux-armhf-3.10/layer2
creating build/temp.linux-armhf-3.10/layer3
creating build/temp.linux-armhf-3.10/layer4
creating build/temp.linux-armhf-3.10/layer5
creating build/temp.linux-armhf-3.10/ov
creating build/temp.linux-armhf-3.10/ov/src
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD build/generated/ShaderText.cpp -o build/temp.linux-armhf-3.10/build/generated/ShaderText.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerInitAll':
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:271:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
271 | if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:273:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
273 | if(ok) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function 'write_psf_structure':
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:782:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
782 | if (strlen(atoms[i].type) > fw) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerFreeAll':
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:411:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
411 | if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:413:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
413 | return ok;
| ^~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: 'fortread_4' defined but not used [-Wunused-function]
103 | static int fortread_4(void *dest, int n, int swap, FILE *fd) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: 'fort_get_endian_reclen' defined but not used [-Wunused-function]
55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: 'fort_eat_recmark' defined but not used [-Wunused-function]
36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28,
from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'swap8_aligned' defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'swap2_aligned' defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function 'void* open_grid_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
84 | fread(&dataBegin, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'swap8_unaligned' defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'swap4_unaligned' defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_timestep(void*, int, molfile_timestep_t*)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
275 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
289 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_bonds_aux(void*, int*, int**, int**, float**)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
199 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
209 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
127 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
138 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'void* open_mol2_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
74 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
81 | fgets(line, LINESIZE, fd); // Read and ignore the mol_name
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
82 | fgets(line, LINESIZE, fd); // Read the molecule info
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
91 | fgets(line, LINESIZE, fd); // Read and ignore the mol_type
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
92 | fgets(line, LINESIZE, fd); // Read the charge_type
| ~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function 'int {anonymous}::ReadPARM::readparm(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
435 | fscanf(file, " " DBLFMT, &prm->Charges[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
444 | fscanf(file, " " DBLFMT, &prm->Masses[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
510 | fscanf(file, " " DBLFMT, &prm->Rk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
517 | fscanf(file, " " DBLFMT, &prm->Req[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
524 | fscanf(file, " " DBLFMT, &prm->Tk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
531 | fscanf(file, " " DBLFMT, &prm->Teq[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
538 | fscanf(file, " " DBLFMT, &prm->Pk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
545 | fscanf(file, " " DBLFMT, &prm->Pn[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
552 | fscanf(file, " " DBLFMT, &prm->Phase[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
559 | fscanf(file, " " DBLFMT, &prm->Solty[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
567 | fscanf(file, " " DBLFMT, &prm->Cn1[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
575 | fscanf(file, " " DBLFMT, &prm->Cn2[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
756 | fscanf(file, " " DBLFMT, &prm->HB12[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
763 | fscanf(file, " " DBLFMT, &prm->HB6[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
771 | fscanf(file, " " DBLFMT, &H[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:23: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
853 | fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
854 | &prm->Box[0], &prm->Box[1], &prm->Box[2]);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:23: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
867 | fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
868 | &prm->Natcap, &prm->Cutcap,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
869 | &prm->Xcap, &prm->Ycap, &prm->Zcap);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'int read_brix_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
247 | fread(brick, sizeof(char), 512, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'void* open_brix_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
79 | fscanf(fd, "%3s", keyWord);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
86 | fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
93 | fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
100 | fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
109 | fscanf(fd, " %s %f %f %f %f %f %f", keyWord,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
110 | &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
123 | fscanf(fd, " %s %f", keyWord, &prod);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
128 | fscanf(fd, " %s %f", keyWord, &plus);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
135 | fscanf(fd, " %s %f", keyWord, &sigma);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'int read_dsn6_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
233 | fread(brick, sizeof(char), 512, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'void* open_dsn6_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
91 | fread(fileHeader, sizeof(short), 19, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'abinit_readline':
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:279:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
279 | for (i = 0; i < strlen(line); ++i) {
| ^
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:70:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function 'int mdio_readline(md_file*, char*, int, int)':
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
426 | fgets(buf, n, mf->f);
| ~~~~~^~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: 'vasp_timestep_unitcell' defined but not used [-Wunused-function]
111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
| ^~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'angular_momentum_expon':
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'read_molden_rundata':
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable 'hessian_data' set but not used [-Wunused-but-set-variable]
596 | molfile_qm_hessian_t *hessian_data;
| ^~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: 'whereami' defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: 'thisline' defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: 'have_keyline' defined but not used [-Wunused-function]
1006 | static int have_keyline(FILE *file, const char *keystring1,
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: 'symmetry_expand' defined but not used [-Wunused-function]
711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: 'print_matrix4' defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: 'del_wavefunction' defined but not used [-Wunused-function]
507 | static void del_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: 'replace_wavefunction' defined but not used [-Wunused-function]
490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
| ^~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:48:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: 'get_pte_vdw_radius' defined but not used [-Wunused-function]
109 | static float get_pte_vdw_radius(const int idx)
| ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: 'get_pte_mass' defined but not used [-Wunused-function]
102 | static float get_pte_mass(const int idx)
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'get_pte_label' defined but not used [-Wunused-function]
95 | static const char *get_pte_label(const int idx)
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure':
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=]
127 | sprintf(atom->resname, "%d", resid);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999]
127 | sprintf(atom->resname, "%d", resid);
| ^~~~
In file included from /usr/include/stdio.h:866,
from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 8
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:34:
In function 'strncpy',
inlined from 'read_molden_structure' at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:350:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_molden_structure' at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:351:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_molden_structure' at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:317:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_molden_structure' at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:326:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 11 bytes from a string of length 1023 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'void* open_ccp4_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
304 | fgets(symData, 81, fd);
| ~~~~~^~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: 'vasp_timestep_unitcell' defined but not used [-Wunused-function]
111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
| ^~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'write_vaspposcar_timestep':
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to 'sizeof' in 'strncpy' call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess]
360 | strncpy(tmptype, atom->type, sizeof(atom->type));
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:40:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:32:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function 'open_rst_read':
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable 'timesteprst' set but not used [-Wunused-but-set-variable]
48 | double timesteprst;
| ^~~~~~~~~~~
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:23,
from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:31:
In function 'strncpy',
inlined from 'get_pdb_cryst1' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:119:3,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:277:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 80 bytes from a string of length 82 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:144:5,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 8 bytes from a string of length 52 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:149:5,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 8 bytes from a string of length 44 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:154:5,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 8 bytes from a string of length 36 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:299:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 70 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:304:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 1 byte from a string of length 66 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:308:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 65 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:317:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 60 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5,
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:326:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5,
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:326:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:330:5,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 10 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:339:5,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 2 bytes from a string of length 6 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void* open_cube_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
175 | fgets(readbuf, 1023, cube->fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
181 | fgets(readbuf, 1023, cube->fd); // skip second header line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
326 | fgets(readbuf, 1023, cube->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
337 | fgets(readbuf, 1023, cube->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
339 | fscanf(cube->fd, "%d", &cube->nsets);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
344 | fscanf(cube->fd, "%d", &orb);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
349 | fgets(readbuf, 1023, cube->fd); // gobble up rest of line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In function 'strncpy',
inlined from 'get_pdb_header' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:190:5,
inlined from 'open_pdb_read' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:79:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 9 bytes from a string of length 32 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_header' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:200:5,
inlined from 'open_pdb_read' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:79:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 20 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'angular_momentum_expon':
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: 'whereami' defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: 'thisline' defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: 'fpexpftoc' defined but not used [-Wunused-function]
1028 | static int fpexpftoc(char *ftocstr) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: 'have_keyline' defined but not used [-Wunused-function]
1006 | static int have_keyline(FILE *file, const char *keystring1,
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:962:12: warning: 'goto_keyline' defined but not used [-Wunused-function]
962 | static int goto_keyline(FILE *file, ...) {
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: 'strtoupper' defined but not used [-Wunused-function]
901 | static char *strtoupper(char *s) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: 'iswhiteline' defined but not used [-Wunused-function]
895 | static int iswhiteline(char *s) {
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:846:13: warning: 'eatwhitelines' defined but not used [-Wunused-function]
846 | static void eatwhitelines(FILE *file) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:13: warning: 'eatline' defined but not used [-Wunused-function]
835 | static void eatline(FILE * fd, int n)
| ^~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: 'symmetry_expand' defined but not used [-Wunused-function]
711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: 'print_matrix4' defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:540:13: warning: 'angular_momentum_expon' defined but not used [-Wunused-function]
540 | static void angular_momentum_expon(int *ang_mom_expon,
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: 'del_wavefunction' defined but not used [-Wunused-function]
507 | static void del_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: 'replace_wavefunction' defined but not used [-Wunused-function]
490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
| ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:471:27: warning: 'add_wavefunction' defined but not used [-Wunused-function]
471 | static qm_wavefunction_t* add_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: 'init_qmdata' defined but not used [-Wunused-function]
437 | static qmdata_t* init_qmdata() {
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'int getUniqueResID(char*, int)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable 'i' [-Wunused-variable]
443 | int i, uid;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable 'j' [-Wunused-variable]
484 | int i, count, atomdata, pos, idx, xyzcount, j;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable 'oldChain' [-Wunused-variable]
503 | char oldChain[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readAngleBonds(molfile_atom_t*, pdbxParser*)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable 'bondTable' [-Wunused-variable]
803 | int bondTable[32];
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable 'j' [-Wunused-variable]
807 | int i, pos, j, k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable 'modelNum' [-Wunused-variable]
811 | char modelNum[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable 'atom' [-Wunused-variable]
822 | molfile_atom_t * atom;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable 'test' [-Wunused-variable]
884 | int test = parser->nbonds + bnum;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readRMSDBonds(molfile_atom_t*, pdbxParser*)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable 'bondTable' [-Wunused-variable]
984 | int bondTable[32];
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable 'j' [-Wunused-variable]
988 | int i, pos, j, k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable 'modelNum' [-Wunused-variable]
991 | char modelNum[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable 'atom' [-Wunused-variable]
1002 | molfile_atom_t * atom;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'void* open_file_write(const char*, const char*, int)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable 'fd' [-Wunused-variable]
1409 | FILE* fd;
| ^~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
| ~~^ ~~
| | |
| long int fio_size_t {aka long long int}
| %lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
| ~~^ ~~~~
| | |
| long int fio_size_t {aka long long int}
| %lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~~~~~
| |
| fio_size_t {aka long long int}
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:89:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'swap8_unaligned' defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'swap4_unaligned' defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: 'fio_readv' defined but not used [-Wunused-function]
459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
| ^~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
| ~~^ ~~
| | |
| long int fio_size_t {aka long long int}
| %lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
| ~~^ ~~~~
| | |
| long int fio_size_t {aka long long int}
| %lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~~~~~
| |
| fio_size_t {aka long long int}
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdheader':
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:191:57: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
191 | } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:204:54: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
204 | if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:222:26: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
222 | if (input_integer[0] != dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:399:45: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
399 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:416:45: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
416 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdstep':
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:621:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
621 | if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT;
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:625:43: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
625 | if ((tmpbuf[2*i]+tmpbuf[2*i+1]) != sizeof(float)*N) return DCD_BADFORMAT;
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable 'readlen' set but not used [-Wunused-but-set-variable]
546 | fio_size_t readlen; /* number of bytes actually read */
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'swap2_aligned' defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:609:12: warning: 'fio_write_str' defined but not used [-Wunused-function]
609 | static int fio_write_str(fio_fd fd, const char *str) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:605:12: warning: 'fio_read_int32' defined but not used [-Wunused-function]
605 | static int fio_read_int32(fio_fd fd, int *i) {
| ^~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: 'fio_readv' defined but not used [-Wunused-function]
459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
| ^~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:47:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function 'int read_spider_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
286 | fread(datablock, total * sizeof(float), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_timestep(void*, int, molfile_timestep_t*)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
243 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
252 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_bonds_aux(void*, int*, int**, int**, float**)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
328 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
346 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
355 | fgets(nextline, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
419 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
194 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
203 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'void* open_bgf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
59 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)':
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
96 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
104 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
119 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
131 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
153 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
162 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
171 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/stdio.h:866,
from contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:29:
In function 'sprintf',
inlined from 'vtf_error' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:3,
inlined from 'vtf_read_bonds' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1203:5,
inlined from 'vtf_read_bonds' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1193:12:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:10: warning: '%s' directive argument is null [-Wformat-overflow=]
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:41:
In function 'strncpy',
inlined from 'read_tinker_structure' at contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:103:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:32:
In function 'strncat',
inlined from 'vtf_parse_atom' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:538:9,
inlined from 'vtf_parse_structure' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:812:24,
inlined from '_vtf_open_file_read' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:944:5,
inlined from 'vtf_open_file_read' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:970:10:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:135:10: warning: '__builtin___strncat_chk' output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
135 | return __builtin___strncat_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
136 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncat',
inlined from 'vtf_parse_atom' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:629:7,
inlined from 'vtf_parse_structure' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:812:24,
inlined from '_vtf_open_file_read' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:944:5,
inlined from 'vtf_open_file_read' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:970:10:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:135:10: warning: '__builtin___strncat_chk' output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
135 | return __builtin___strncat_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
136 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/c++/11/map:60,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:58:
/usr/include/c++/11/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >]':
/usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator' changed in GCC 7.1
2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
102 | fread(&headersize, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)':
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
91 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
116 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
132 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
149 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
155 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
161 | fgets(line, 80, infile); //one more read to keep us in sync
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
170 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
217 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
237 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
256 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/c++/11/map:61,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:58:
/usr/include/c++/11/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = {anonymous}::Blob; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >]':
/usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'void* open_plt_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
69 | fread(intHeader, sizeof(int), 5, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
82 | fread(floatHeader, sizeof(float), 6, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Deferred.cpp -o build/temp.linux-armhf-3.10/layer0/Deferred.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Map.cpp -o build/temp.linux-armhf-3.10/layer0/Map.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_structure':
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
292 | if (NULL == fgets(fbuffer, 1024, data->file))
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
295 | if (NULL == fgets(fbuffer, 1024, data->file))
| ^~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)':
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
371 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
306 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void put_element_ply(PlyFile*, void*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable 'i' [-Wunused-variable]
459 | int i,j,k;
| ^
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:34:
In function 'strncpy',
inlined from 'read_dlpoly_config_structure' at contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:362:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void ascii_get_element(PlyFile*, char*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable 'i' [-Wunused-variable]
1407 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable 'i' [-Wunused-variable]
1541 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'void DDmkdir(const string&, mode_t, int, int)':
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:23: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
714 | sprintf(sub, "%03x/", i);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:22: note: directive argument in the range [0, 2147483646]
714 | sprintf(sub, "%03x/", i);
| ^~~~~~~
In file included from /usr/include/stdio.h:866,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 6
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:30: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
722 | sprintf(subsub, "%03x", j);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:29: note: directive argument in the range [0, 2147483646]
722 | sprintf(subsub, "%03x", j);
| ^~~~~~
In file included from /usr/include/stdio.h:866,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 4 and 9 bytes into a destination of size 6
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
1629 | fread (&len, sizeof(int), 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
1631 | fread (str, len, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void get_binary_item(FILE*, int, int*, unsigned int*, double*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2057 | fread (ptr, 1, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2063 | fread (ptr, 1, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2069 | fread (ptr, 2, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2075 | fread (ptr, 2, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2081 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2087 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2093 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2099 | fread (ptr, 8, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'read_next_timestep':
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable 'numatoms' set but not used [-Wunused-but-set-variable]
103 | int i, numatoms;
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'write_timestep':
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:206:55: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
206 | if (fwrite(tmp, sizeof(double), 3*n, namdbin->fd) != 3*n) {
| ^~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Err.cpp -o build/temp.linux-armhf-3.10/layer0/Err.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In function 'strncpy',
inlined from 'read_dlpoly_structure' at contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:267:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'std::string framefile(const string&, size_t, size_t, int, int)':
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:35: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
675 | sprintf(answer, "%03x/", d1);
| ^
In file included from /usr/include/stdio.h:866,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 9
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:35: warning: '%03x' directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=]
673 | sprintf(answer, "%03x/%03x/", d1, d2);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:29: note: directive argument in the range [0, 2147483646]
673 | sprintf(answer, "%03x/%03x/", d1, d2);
| ^~~~~~~~~~~~
In file included from /usr/include/stdio.h:866,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 9 and 19 bytes into a destination of size 9
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_timestep(void*, int, molfile_timestep_t*)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
288 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
297 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
365 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
387 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
395 | fgets(nextline, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
455 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
241 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
250 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'void* open_xbgf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
72 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/PostProcess.cpp -o build/temp.linux-armhf-3.10/layer0/PostProcess.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'char* recreate_command_line(int, char**)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
1334 | line[0] = '\0';
| ~~~~~~~~^~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by 'malloc'
1333 | line = (char *) malloc (sizeof(char) * len);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function 'read_mmtk_cdf_structure':
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:730:15: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
730 | if (len > sizeof(name)) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function 'read_mmtk_cdf_timestep':
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:1060:16: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
1060 | for (i=0; i<(3 * mmtk->atom_numberdim); i++) {
| ^
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Feedback.cpp -o build/temp.linux-armhf-3.10/layer0/Feedback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void eatline(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
238 | fgets(readbuf, 1024, fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void* open_xsf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
408 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
442 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
444 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
446 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
448 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
450 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
473 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
508 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function 'int {anonymous}::write_structure(void*, int, const molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable 'last_ctnumber' [-Wunused-variable]
1904 | int last_ctnumber = -1;
| ^~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function 'int read_parm7_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
78 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
204 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
257 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_resnames(const char*, int, char*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
275 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
289 | fscanf(file, " %d", &cur);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'parmstruct* read_parm7_header(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
368 | fgets(sdum, 512, file);
| ~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
371 | fscanf(file, "%s\n", sdum); // "%FLAG"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
378 | fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
385 | fscanf(file, "%s\n", sdum); // "FORMAT (20a4)"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
399 | fgets(prm->title, sizeof(prm->title), file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
427 | fgets(sdum, sizeof(sdum), file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
439 | fscanf(file,parm7,
| ~~~~~~^~~~~~~~~~~~
440 | &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
441 | &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
442 | &prm->Jparm, &prm->Nparm);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
443 | fscanf(file, parm7,
| ~~~~~~^~~~~~~~~~~~~
444 | &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
445 | &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
446 | &prm->Natyp, &prm->Nphb);
| ~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
447 | fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
448 | &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
449 | &prm->IfBox, &prm->Nmxrs, &prm->IfCap);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
451 | fscanf(file,"%8d",&prm->Numextra); //BB
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int read_parm7_flag(FILE*, const char*, const char*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
79 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
87 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
97 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'get_atom_radius':
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable 'type' set but not used [-Wunused-but-set-variable]
166 | char *name, *type;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable 'name' set but not used [-Wunused-but-set-variable]
166 | char *name, *type;
| ^~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:34:
In function 'strncpy',
inlined from 'get_pqr_cryst1' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:109:3,
inlined from 'read_pqr_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:319:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pqr_fields' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:137:3,
inlined from 'read_pqr_structure' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 68 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pqr_fields' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:138:3,
inlined from 'read_pqr_structure' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 63 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pqr_fields' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:139:3,
inlined from 'read_pqr_structure' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 1 byte from a string of length 59 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pqr_fields' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:140:3,
inlined from 'read_pqr_structure' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 58 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Util.cpp -o build/temp.linux-armhf-3.10/layer0/Util.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:53:
In function 'strncpy',
inlined from 'read_xyz_structure' at contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:133:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/ButMode.cpp -o build/temp.linux-armhf-3.10/layer1/ButMode.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/ShaderMgr.cpp -o build/temp.linux-armhf-3.10/layer0/ShaderMgr.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Block.cpp -o build/temp.linux-armhf-3.10/layer0/Block.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Match.cpp -o build/temp.linux-armhf-3.10/layer0/Match.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/c++/11/map:61,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:58:
/usr/include/c++/11/bits/stl_map.h: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const':
/usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Field.cpp -o build/temp.linux-armhf-3.10/layer0/Field.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Util2.cpp -o build/temp.linux-armhf-3.10/layer0/Util2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Matrix.cpp -o build/temp.linux-armhf-3.10/layer0/Matrix.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/CarveHelper.cpp -o build/temp.linux-armhf-3.10/layer0/CarveHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Vector.cpp -o build/temp.linux-armhf-3.10/layer0/Vector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/ContourSurf.cpp -o build/temp.linux-armhf-3.10/layer0/ContourSurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/File.cpp -o build/temp.linux-armhf-3.10/layer0/File.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/CGO.cpp -o build/temp.linux-armhf-3.10/layer1/CGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/GenericBuffer.cpp -o build/temp.linux-armhf-3.10/layer0/GenericBuffer.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Crystal.cpp -o build/temp.linux-armhf-3.10/layer0/Crystal.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'int read_edm_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
240 | fgets(readbuf, 13, edm->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'void eatline(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
44 | fgets(readbuf, 1024, fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Word.cpp -o build/temp.linux-armhf-3.10/layer0/Word.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function 'void* open_fs4_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
79 | fread(&dataBegin, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'angular_momentum_expon':
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'have_gamess':
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable 'word' set but not used [-Wunused-but-set-variable]
1106 | char word[3][BUFSIZ];
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_stats':
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable 'word' set but not used [-Wunused-but-set-variable]
2264 | char word[7][BUFSIZ];
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_wavefunction':
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable 'word' set but not used [-Wunused-but-set-variable]
3573 | char word[6][BUFSIZ];
| ^~~~
At top level:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1002:13: warning: 'print_input_data' defined but not used [-Wunused-function]
1002 | static void print_input_data(qmdata_t *data) {
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: 'get_pte_vdw_radius' defined but not used [-Wunused-function]
109 | static float get_pte_vdw_radius(const int idx)
| ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: 'get_pte_mass' defined but not used [-Wunused-function]
102 | static float get_pte_mass(const int idx)
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'get_pte_label' defined but not used [-Wunused-function]
95 | static const char *get_pte_label(const int idx)
| ^~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: 'whereami' defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: 'thisline' defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: 'fpexpftoc' defined but not used [-Wunused-function]
1028 | static int fpexpftoc(char *ftocstr) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: 'strtoupper' defined but not used [-Wunused-function]
901 | static char *strtoupper(char *s) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: 'iswhiteline' defined but not used [-Wunused-function]
895 | static int iswhiteline(char *s) {
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: 'print_matrix4' defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
In file included from /usr/include/string.h:519,
from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:155:
In function 'strncpy',
inlined from 'read_gamess_rundata' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:615:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_gamess_rundata' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:620:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 4096 bytes from a string of length 8191 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_gamess_rundata' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:621:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_gamess_rundata' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:622:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1618:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/MemoryDebug.cpp -o build/temp.linux-armhf-3.10/layer0/MemoryDebug.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/GraphicsUtil.cpp -o build/temp.linux-armhf-3.10/layer0/GraphicsUtil.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In function 'strncat',
inlined from 'get_basis_options' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1422:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:135:10: warning: '__builtin___strncat_chk' output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
135 | return __builtin___strncat_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
136 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncat',
inlined from 'get_basis_options' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1411:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:135:10: warning: '__builtin___strncat_chk' output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
135 | return __builtin___strncat_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
136 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/MemoryUsage.cpp -o build/temp.linux-armhf-3.10/layer0/MemoryUsage.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Isosurf.cpp -o build/temp.linux-armhf-3.10/layer0/Isosurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/ccealignmodule.cpp -o build/temp.linux-armhf-3.10/layer0/ccealignmodule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/FontGLUT.cpp -o build/temp.linux-armhf-3.10/layer1/FontGLUT.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In function 'strncpy',
inlined from 'get_fmoxyz' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1682:5,
inlined from 'get_input_structure' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1537:12:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/MemoryUsage.cpp: In function 'size_t pymol::memory_usage()':
layer0/MemoryUsage.cpp:38:21: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=]
38 | std::fscanf(fp, "%*zu%zu", &vmRSS);
| ^~~~~~~~~
layer0/MemoryUsage.cpp:38:16: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
38 | std::fscanf(fp, "%*zu%zu", &vmRSS);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/MyPNG.cpp -o build/temp.linux-armhf-3.10/layer0/MyPNG.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In function 'strncpy',
inlined from 'get_proc_mem.isra' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1279:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 256 bytes from a string of length 8191 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_proc_mem.isra' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1272:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' specified bound 256 equals destination size [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_contrl' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1981:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' specified bound 8192 equals destination size [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_contrl_firefly' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1818:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' specified bound 8192 equals destination size [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'symmetry_expand' at contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:819:5,
inlined from 'get_traj_frame.constprop' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2931:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 10 bytes from a string of length 10 [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Parse.cpp -o build/temp.linux-armhf-3.10/layer0/Parse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'void line3(FILE*, GRASSP*)':
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
186 | fread(line3, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)':
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro 'TRASH'
284 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
285 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro 'TRASH'
291 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro 'TRASH'
305 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
306 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro 'TRASH'
307 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro 'TRASH'
311 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro 'TRASH'
313 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro 'TRASH'
318 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
319 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro 'TRASH'
320 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro 'TRASH'
328 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
329 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro 'TRASH'
330 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro 'TRASH'
354 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
355 | fread(vertex, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro 'TRASH'
356 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro 'TRASH'
357 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
358 | fread(access, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro 'TRASH'
359 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro 'TRASH'
360 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
361 | fread(normal, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro 'TRASH'
362 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro 'TRASH'
371 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
372 | fread(triangle, 3 * sizeof(int), ntriangles, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro 'TRASH'
373 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro 'TRASH'
374 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
375 | fread(properties, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro 'TRASH'
394 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
395 | fread(striangle, sizeof(short), 3 * ntriangles, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro 'TRASH'
396 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro 'TRASH'
397 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
398 | fread(properties, sizeof(float), 3 * nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Pixmap.cpp -o build/temp.linux-armhf-3.10/layer0/Pixmap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/FontGLUT8x13.cpp -o build/temp.linux-armhf-3.10/layer1/FontGLUT8x13.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Ortho.cpp -o build/temp.linux-armhf-3.10/layer1/Ortho.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Scene.cpp -o build/temp.linux-armhf-3.10/layer1/Scene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)':
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
278 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
297 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
319 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
357 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
223 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
241 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'void* open_mdf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
164 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
176 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
183 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/FontGLUT9x15.cpp -o build/temp.linux-armhf-3.10/layer1/FontGLUT9x15.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Shaker.cpp -o build/temp.linux-armhf-3.10/layer1/Shaker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/FontGLUTHel10.cpp -o build/temp.linux-armhf-3.10/layer1/FontGLUTHel10.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/marching_cubes.cpp -o build/temp.linux-armhf-3.10/layer0/marching_cubes.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/FontGLUTHel12.cpp -o build/temp.linux-armhf-3.10/layer1/FontGLUTHel12.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/FontGLUTHel18.cpp -o build/temp.linux-armhf-3.10/layer1/FontGLUTHel18.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/FontType.cpp -o build/temp.linux-armhf-3.10/layer1/FontType.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/SymOp.cpp -o build/temp.linux-armhf-3.10/layer1/SymOp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer1/SymOp.cpp: In member function 'std::string pymol::SymOp::to_string() const':
layer1/SymOp.cpp:37:32: warning: '%d' directive output may be truncated writing between 1 and 4 bytes into a region of size between 0 and 5 [-Wformat-truncation=]
37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5);
| ^~
layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5);
| ^~~~~~~~~~~
layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
In file included from /usr/include/stdio.h:866,
from /usr/include/c++/11/cstdio:42,
from /usr/include/c++/11/ext/string_conversions.h:43,
from /usr/include/c++/11/bits/basic_string.h:6608,
from /usr/include/c++/11/string:55,
from layer1/SymOp.h:9,
from layer1/SymOp.cpp:7:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 6 and 17 bytes into a destination of size 8
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/SymOpPConv.cpp -o build/temp.linux-armhf-3.10/layer1/SymOpPConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Wizard.cpp -o build/temp.linux-armhf-3.10/layer1/Wizard.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/os_gl.cpp -o build/temp.linux-armhf-3.10/layer0/os_gl.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/SymOpTools.cpp -o build/temp.linux-armhf-3.10/layer1/SymOpTools.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Basis.cpp -o build/temp.linux-armhf-3.10/layer1/Basis.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/ShaderPrg.cpp -o build/temp.linux-armhf-3.10/layer0/ShaderPrg.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Movie.cpp -o build/temp.linux-armhf-3.10/layer1/Movie.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer1/Wizard.cpp: In member function 'virtual int CWizard::release(int, int, int, int)':
layer1/Wizard.cpp:571:18: warning: unused variable 'wiz' [-Wunused-variable]
571 | if (auto wiz = WizardGet(G)) {
| ^~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Symmetry.cpp -o build/temp.linux-armhf-3.10/layer1/Symmetry.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/P.cpp -o build/temp.linux-armhf-3.10/layer1/P.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Sphere.cpp -o build/temp.linux-armhf-3.10/layer0/Sphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/AssemblyHelpers.cpp -o build/temp.linux-armhf-3.10/layer2/AssemblyHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/DistSet.cpp -o build/temp.linux-armhf-3.10/layer2/DistSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Tetsurf.cpp -o build/temp.linux-armhf-3.10/layer0/Tetsurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Text.cpp -o build/temp.linux-armhf-3.10/layer1/Text.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/SceneMouse.cpp -o build/temp.linux-armhf-3.10/layer1/SceneMouse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/AtomInfo.cpp -o build/temp.linux-armhf-3.10/layer2/AtomInfo.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/PConv.cpp -o build/temp.linux-armhf-3.10/layer1/PConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectCGO.cpp -o build/temp.linux-armhf-3.10/layer2/ObjectCGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/GadgetSet.cpp -o build/temp.linux-armhf-3.10/layer2/GadgetSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Texture.cpp -o build/temp.linux-armhf-3.10/layer0/Texture.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer1/SceneMouse.cpp: In function 'void SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, const NamedPicking&, int, bool)':
layer1/SceneMouse.cpp:455:32: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 237 [-Wformat-truncation=]
455 | " You clicked %s -> (%s)\n", buffer.c_str(), name ENDFB(G);
| ^~ ~~~~
In file included from /usr/include/stdio.h:866,
from /usr/include/c++/11/cstdio:42,
from /usr/include/c++/11/ext/string_conversions.h:43,
from /usr/include/c++/11/bits/basic_string.h:6608,
from /usr/include/c++/11/string:55,
from /usr/include/c++/11/bits/locale_classes.h:40,
from /usr/include/c++/11/bits/ios_base.h:41,
from /usr/include/c++/11/ios:42,
from /usr/include/c++/11/ostream:38,
from include/pymol/zstring_view.h:12,
from layer1/SceneMouse.h:4,
from layer1/SceneMouse.cpp:1:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output 21 or more bytes (assuming 276) into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Picking.cpp -o build/temp.linux-armhf-3.10/layer1/Picking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/AtomInfoHistory.cpp -o build/temp.linux-armhf-3.10/layer2/AtomInfoHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Pop.cpp -o build/temp.linux-armhf-3.10/layer1/Pop.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/HydrogenAdder.cpp -o build/temp.linux-armhf-3.10/layer2/HydrogenAdder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectCallback.cpp -o build/temp.linux-armhf-3.10/layer2/ObjectCallback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/ScenePicking.cpp -o build/temp.linux-armhf-3.10/layer1/ScenePicking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/PyMOLObject.cpp -o build/temp.linux-armhf-3.10/layer1/PyMOLObject.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Tracker.cpp -o build/temp.linux-armhf-3.10/layer0/Tracker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Triangle.cpp -o build/temp.linux-armhf-3.10/layer0/Triangle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/MmodTyping.cpp -o build/temp.linux-armhf-3.10/layer2/MmodTyping.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectDist.cpp -o build/temp.linux-armhf-3.10/layer2/ObjectDist.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/SceneRay.cpp -o build/temp.linux-armhf-3.10/layer1/SceneRay.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/MmtfMoleculeReader.cpp -o build/temp.linux-armhf-3.10/layer2/MmtfMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from /usr/include/c++/11/vector:72,
from layer1/Picking.h:9,
from layer0/Base.h:23,
from layer1/PyMOLObject.h:23,
from layer1/PyMOLObject.cpp:24:
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:67,
from layer1/Picking.h:9,
from layer0/Base.h:23,
from layer1/PyMOLObject.h:23,
from layer1/PyMOLObject.cpp:24:
/usr/include/c++/11/bits/stl_vector.h: In function 'int ObjectStateFromPyList(PyMOLGlobals*, PyObject*, CObjectState*)':
/usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Ray.cpp -o build/temp.linux-armhf-3.10/layer1/Ray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/BondTypeHistory.cpp -o build/temp.linux-armhf-3.10/layer2/BondTypeHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/Mol2Typing.cpp -o build/temp.linux-armhf-3.10/layer2/Mol2Typing.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/CifFile.cpp -o build/temp.linux-armhf-3.10/layer2/CifFile.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/MolV3000.cpp -o build/temp.linux-armhf-3.10/layer2/MolV3000.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectMolecule.cpp -o build/temp.linux-armhf-3.10/layer2/ObjectMolecule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/SceneRender.cpp -o build/temp.linux-armhf-3.10/layer1/SceneRender.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectGadget.cpp -o build/temp.linux-armhf-3.10/layer2/ObjectGadget.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectAlignment.cpp -o build/temp.linux-armhf-3.10/layer2/ObjectAlignment.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer1/Ray.cpp: In function 'void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)':
layer1/Ray.cpp:1535:20: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=]
1535 | "%s"
| ^~
......
1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
| ~~~~~~~~
layer1/Ray.cpp:1530:18: note: 'sprintf' output between 116 and 3302 bytes into a destination of size 1024
1530 | sprintf(buffer,
| ~~~~~~~^~~~~~~~
1531 | "Transform {\n"
| ~~~~~~~~~~~~~~~
1532 | " translation %8.6f %8.6f %8.6f\n"
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1533 | " rotation %8.6f %8.6f %8.6f %8.6f\n"
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1534 | " children [\n"
| ~~~~~~~~~~~~~~~
1535 | "%s"
| ~~~~
1536 | " ]\n"
| ~~~~~~
1537 | "}\n",
| ~~~~~~
1538 | vert2[0] - mid[0],
| ~~~~~~~~~~~~~~~~~~
1539 | vert2[1] - mid[1],
| ~~~~~~~~~~~~~~~~~~
1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/CifMoleculeReader.cpp -o build/temp.linux-armhf-3.10/layer2/CifMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectGadgetRamp.cpp -o build/temp.linux-armhf-3.10/layer2/ObjectGadgetRamp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/ScrollBar.cpp -o build/temp.linux-armhf-3.10/layer1/ScrollBar.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/COLLADA.cpp -o build/temp.linux-armhf-3.10/layer1/COLLADA.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMolecule.cpp: In function 'CoordSet* ObjectMoleculeMOLStr2CoordSet.constprop(PyMOLGlobals*, const char*, AtomInfoType**, const char**)':
layer2/ObjectMolecule.cpp:7579:37: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=]
7579 | " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G)
| ^~ ~~~~~~~
In file included from layer1/Ortho.h:32,
from layer2/ObjectMolecule.cpp:31:
layer0/Feedback.h:274:15: note: 'snprintf' output between 34 and 289 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMolecule.cpp:7578:3: note: in expansion of macro 'PRINTFB'
7578 | PRINTFB(G, FB_ObjectMolecule, FB_Blather)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Seq.cpp -o build/temp.linux-armhf-3.10/layer1/Seq.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepCylBond.cpp -o build/temp.linux-armhf-3.10/layer2/RepCylBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectGroup.cpp -o build/temp.linux-armhf-3.10/layer2/ObjectGroup.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/TypeFace.cpp -o build/temp.linux-armhf-3.10/layer1/TypeFace.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/View.cpp -o build/temp.linux-armhf-3.10/layer1/View.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Character.cpp -o build/temp.linux-armhf-3.10/layer1/Character.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectMap.cpp -o build/temp.linux-armhf-3.10/layer2/ObjectMap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Rep.cpp -o build/temp.linux-armhf-3.10/layer1/Rep.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMolecule.cpp: In member function 'virtual void ObjectMolecule::update()':
layer2/ObjectMolecule.cpp:10605:82: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=]
10605 | " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer2/ObjectMolecule.cpp:31:
layer0/Feedback.h:274:15: note: 'snprintf' output between 68 and 333 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMolecule.cpp:10604:13: note: in expansion of macro 'PRINTFB'
10604 | PRINTFB(G, FB_ObjectMolecule, FB_Blather)
| ^~~~~~~
layer2/ObjectMolecule.cpp: In function 'int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, const float*, int, int)':
layer2/ObjectMolecule.cpp:10731:43: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=]
10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ^~
10732 | buffer, v[0], v[1], v[2], state + 1, mode, 0);
| ~~~~~~
layer2/ObjectMolecule.cpp:10731:21: note: directive argument in the range [-2147483647, 2147483647]
10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp:10731:14: note: 'sprintf' output between 78 and 2036 bytes into a destination of size 1024
10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
10732 | buffer, v[0], v[1], v[2], state + 1, mode, 0);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Setting.cpp -o build/temp.linux-armhf-3.10/layer1/Setting.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Color.cpp -o build/temp.linux-armhf-3.10/layer1/Color.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepDihedral.cpp -o build/temp.linux-armhf-3.10/layer2/RepDihedral.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepNonbonded.cpp -o build/temp.linux-armhf-3.10/layer2/RepNonbonded.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/Sculpt.cpp -o build/temp.linux-armhf-3.10/layer2/Sculpt.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepNonbondedSphere.cpp -o build/temp.linux-armhf-3.10/layer2/RepNonbondedSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepDistDash.cpp -o build/temp.linux-armhf-3.10/layer2/RepDistDash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMap.cpp: In function 'void ObjectMapDump(const ObjectMap*, const char*, int, int)':
layer2/ObjectMap.cpp:5982:24: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 239 [-Wformat-truncation=]
5982 | " ObjectMapDump: %s written to %s\n", om->Name, fname ENDFB(om->G);
| ^~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.10/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output 30 or more bytes (assuming 285) into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepRibbon.cpp -o build/temp.linux-armhf-3.10/layer2/RepRibbon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepDistLabel.cpp -o build/temp.linux-armhf-3.10/layer2/RepDistLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/CoordSet.cpp -o build/temp.linux-armhf-3.10/layer2/CoordSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/SculptCache.cpp -o build/temp.linux-armhf-3.10/layer2/SculptCache.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectMolecule2.cpp -o build/temp.linux-armhf-3.10/layer2/ObjectMolecule2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/SideChainHelper.cpp -o build/temp.linux-armhf-3.10/layer2/SideChainHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)':
layer2/ObjectMap.cpp:2961:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2961 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.10/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:2970:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2970 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.10/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:2976:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2976 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.10/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:3058:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
3058 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.10/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepSphere.cpp -o build/temp.linux-armhf-3.10/layer2/RepSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMap.cpp: In function 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)':
layer2/ObjectMap.cpp:4290:18: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
4290 | " ObjectMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.10/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:4290:18: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
4290 | " ObjectMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.10/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepDot.cpp -o build/temp.linux-armhf-3.10/layer2/RepDot.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/VFont.cpp -o build/temp.linux-armhf-3.10/layer2/VFont.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectMesh.cpp -o build/temp.linux-armhf-3.10/layer2/ObjectMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/AtomIterators.cpp -o build/temp.linux-armhf-3.10/layer3/AtomIterators.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepSphereGenerate.cpp -o build/temp.linux-armhf-3.10/layer2/RepSphereGenerate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/ExecutivePython.cpp -o build/temp.linux-armhf-3.10/layer3/ExecutivePython.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepEllipsoid.cpp -o build/temp.linux-armhf-3.10/layer2/RepEllipsoid.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMolecule2.cpp: In function 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, const float*, int, int, int, int)':
layer2/ObjectMolecule2.cpp:335:27: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
335 | " ObjMol: created %s/%s/%s/%s`%d%c/%s\n",
| ^~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.10/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectMolecule2.cpp:24:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 26 and 291 bytes into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/CifDataValueFormatter.cpp -o build/temp.linux-armhf-3.10/layer3/CifDataValueFormatter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/Editor.cpp -o build/temp.linux-armhf-3.10/layer3/Editor.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepSphereImmediate.cpp -o build/temp.linux-armhf-3.10/layer2/RepSphereImmediate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepLabel.cpp -o build/temp.linux-armhf-3.10/layer2/RepLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMesh.cpp: In member function 'virtual void ObjectMesh::update()':
layer2/ObjectMesh.cpp:502:41: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=]
502 | "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectMesh.cpp:33:
layer0/Feedback.h:274:15: note: 'snprintf' output between 50 and 305 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:501:9: note: in expansion of macro 'PRINTFB'
501 | PRINTFB(I->G, FB_ObjectMesh, FB_Errors)
| ^~~~~~~
layer2/ObjectMesh.cpp:535:40: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=]
535 | " ObjectMesh: updating \"%s\".\n", I->Name ENDFB(G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectMesh.cpp:33:
layer0/Feedback.h:274:15: note: 'snprintf' output between 27 and 282 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:534:13: note: in expansion of macro 'PRINTFB'
534 | PRINTFB(G, FB_ObjectMesh, FB_Details)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Control.cpp -o build/temp.linux-armhf-3.10/layer1/Control.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMesh.cpp: In function 'void ObjectMeshDump(ObjectMesh*, const char*, int, int)':
layer2/ObjectMesh.cpp:329:27: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
329 | " ObjectMeshDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectMesh.cpp:33:
layer0/Feedback.h:274:15: note: 'snprintf' output 31 or more bytes (assuming 286) into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:328:7: note: in expansion of macro 'PRINTFB'
328 | PRINTFB(I->G, FB_ObjectMesh, FB_Actions)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/MaeExportHelpers.cpp -o build/temp.linux-armhf-3.10/layer3/MaeExportHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectMolecule3.cpp -o build/temp.linux-armhf-3.10/layer2/ObjectMolecule3.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepSurface.cpp -o build/temp.linux-armhf-3.10/layer2/RepSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/SelectorTmp.cpp -o build/temp.linux-armhf-3.10/layer3/SelectorTmp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Editor.cpp: In function 'void EditorPrepareDrag(PyMOLGlobals*, pymol::CObject*, int, int, int, int)':
layer3/Editor.cpp:1933:29: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
1933 | " Editor: grabbing (%s).", name ENDFB(G);
| ^~ ~~~~
In file included from layer1/Ortho.h:32,
from layer1/ButMode.h:20,
from layer3/Editor.cpp:28:
layer0/Feedback.h:274:15: note: 'snprintf' output between 22 and 277 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Editor.cpp:1932:7: note: in expansion of macro 'PRINTFB'
1932 | PRINTFB(G, FB_Editor, FB_Blather)
| ^~~~~~~
layer3/Editor.cpp: In function 'void EditorDefineExtraPks(PyMOLGlobals*)':
layer3/Editor.cpp:335:29: warning: '%s' directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=]
335 | sprintf(buffer, "(byres %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:335:12: note: 'sprintf' output between 9 and 264 bytes into a destination of size 256
335 | sprintf(buffer, "(byres %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:337:31: warning: '%s' directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=]
337 | sprintf(buffer, "(bychain %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:337:12: note: 'sprintf' output between 11 and 266 bytes into a destination of size 256
337 | sprintf(buffer, "(bychain %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:339:32: warning: '%s' directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=]
339 | sprintf(buffer, "(byobject %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:339:12: note: 'sprintf' output between 12 and 267 bytes into a destination of size 256
339 | sprintf(buffer, "(byobject %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Extrude.cpp -o build/temp.linux-armhf-3.10/layer1/Extrude.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectSlice.cpp -o build/temp.linux-armhf-3.10/layer2/ObjectSlice.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/MoleculeExporter.cpp -o build/temp.linux-armhf-3.10/layer3/MoleculeExporter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepMesh.cpp -o build/temp.linux-armhf-3.10/layer2/RepMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/SpecRec.cpp -o build/temp.linux-armhf-3.10/layer3/SpecRec.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/Executive.cpp -o build/temp.linux-armhf-3.10/layer3/Executive.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/SpecRecSpecial.cpp -o build/temp.linux-armhf-3.10/layer3/SpecRecSpecial.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectSlice.cpp: In member function 'virtual void ObjectSlice::update()':
layer2/ObjectSlice.cpp:639:42: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=]
639 | "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSlice.cpp:34:
layer0/Feedback.h:274:15: note: 'snprintf' output between 51 and 306 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSlice.cpp:638:9: note: in expansion of macro 'PRINTFB'
638 | PRINTFB(I->G, FB_ObjectSlice, FB_Errors)
| ^~~~~~~
layer2/ObjectSlice.cpp:650:39: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=]
650 | " ObjectSlice: updating \"%s\".\n", I->Name ENDFB(I->G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSlice.cpp:34:
layer0/Feedback.h:274:15: note: 'snprintf' output between 28 and 283 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSlice.cpp:649:11: note: in expansion of macro 'PRINTFB'
649 | PRINTFB(I->G, FB_ObjectSlice, FB_Blather)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Font.cpp -o build/temp.linux-armhf-3.10/layer1/Font.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectSurface.cpp -o build/temp.linux-armhf-3.10/layer2/ObjectSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer5/main.cpp -o build/temp.linux-armhf-3.10/layer5/main.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer4/Cmd.cpp -o build/temp.linux-armhf-3.10/layer4/Cmd.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD ov/src/ov_utility.cpp -o build/temp.linux-armhf-3.10/ov/src/ov_utility.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD ov/src/OVContext.cpp -o build/temp.linux-armhf-3.10/ov/src/OVContext.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD ov/src/OVHeap.cpp -o build/temp.linux-armhf-3.10/ov/src/OVHeap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD ov/src/OVHeapArray.cpp -o build/temp.linux-armhf-3.10/ov/src/OVHeapArray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD ov/src/OVLexicon.cpp -o build/temp.linux-armhf-3.10/ov/src/OVLexicon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/MovieScene.cpp -o build/temp.linux-armhf-3.10/layer3/MovieScene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)':
layer2/ObjectSurface.cpp:268:30: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
268 | " ObjectSurfaceDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSurface.cpp:35:
layer0/Feedback.h:274:15: note: 'snprintf' output 34 or more bytes (assuming 289) into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSurface.cpp:267:7: note: in expansion of macro 'PRINTFB'
267 | PRINTFB(I->G, FB_ObjectSurface, FB_Actions)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD ov/src/OVOneToAny.cpp -o build/temp.linux-armhf-3.10/ov/src/OVOneToAny.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD ov/src/OVOneToOne.cpp -o build/temp.linux-armhf-3.10/ov/src/OVOneToOne.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepWireBond.cpp -o build/temp.linux-armhf-3.10/layer2/RepWireBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectSurface.cpp: In member function 'virtual void ObjectSurface::update()':
layer2/ObjectSurface.cpp:493:43: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
493 | " ObjectSurface: updating \"%s\".\n", I->Name ENDFB(I->G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSurface.cpp:35:
layer0/Feedback.h:274:15: note: 'snprintf' output between 30 and 285 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSurface.cpp:492:13: note: in expansion of macro 'PRINTFB'
492 | PRINTFB(I->G, FB_ObjectSurface, FB_Details)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD ov/src/OVRandom.cpp -o build/temp.linux-armhf-3.10/ov/src/OVRandom.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectVolume.cpp -o build/temp.linux-armhf-3.10/layer2/ObjectVolume.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)':
layer3/Executive.cpp:9007:58: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=]
9007 | " Remove: eliminated %d atoms in model \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 42 and 307 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9006:15: note: in expansion of macro 'PRINTFB'
9006 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)':
layer3/Executive.cpp:11424:28: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11424 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~
11425 | name, nSet, obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11424:17: note: directive argument in the range [1, 2147483647]
11424 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 42 and 560 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11423:15: note: in expansion of macro 'PRINTF'
11423 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function 'PyObject* ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, const char*, int, int, int)':
layer3/Executive.cpp:11505:26: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11505 | " Getting: %s for %d bonds in object \"%s\".\n",
| ^~
11506 | name, nSet, obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11505:15: note: directive argument in the range [1, 2147483647]
11505 | " Getting: %s for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 38 and 556 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11504:13: note: in expansion of macro 'PRINTF'
11504 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)':
layer3/Executive.cpp:11605:62: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 217 [-Wformat-truncation=]
11605 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 42 or more bytes (assuming 306) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11604:17: note: in expansion of macro 'PRINTF'
11604 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function 'int ExecutiveUnsetBondSetting(PyMOLGlobals*, int, const char*, const char*, int, int, int)':
layer3/Executive.cpp:11684:26: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11684 | " Setting: %s unset for %d bonds in object \"%s\".\n",
| ^~
11685 | name, nSet, rec->obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11684:15: note: directive argument in the range [1, 2147483647]
11684 | " Setting: %s unset for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 44 and 562 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11683:13: note: in expansion of macro 'PRINTF'
11683 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, const char*, pymol::CObject*, int, int, int)':
layer3/Executive.cpp:12226:30: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12226 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
12227 | name, value2, obj->Name, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12226:19: note: directive argument in the range [1, 2147483647]
12226 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 43 and 1584 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12225:17: note: in expansion of macro 'PRINTF'
12225 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12218:30: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12218 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
12219 | name, value2, obj->Name ENDF(G);
| ~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 34 and 1566 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12217:17: note: in expansion of macro 'PRINTF'
12217 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12197:29: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12197 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~ ~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 21 and 1298 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12197:11: note: in expansion of macro 'PRINTF'
12197 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)':
layer3/Executive.cpp:12129:36: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12129 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
12130 | name, op.i4, rec->obj->Name ENDF(G);
| ~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 42 and 561 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12128:23: note: in expansion of macro 'PRINTF'
12128 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12097:32: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12097 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~
12098 | name, value2, nObj, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12097:21: note: directive argument in the range [1, 2147483647]
12097 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12097:21: note: directive argument in the range [1, 2147483647]
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 43 and 1338 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12096:19: note: in expansion of macro 'PRINTF'
12096 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12094:32: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12094 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
| ^~ ~~~~
layer3/Executive.cpp:12094:21: note: directive argument in the range [1, 2147483647]
12094 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 34 and 1320 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12093:19: note: in expansion of macro 'PRINTF'
12093 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12161:36: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12161 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
12162 | name, value2, rec->obj->Name, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12161:25: note: directive argument in the range [1, 2147483647]
12161 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 43 and 1584 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12160:23: note: in expansion of macro 'PRINTF'
12160 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12153:36: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12153 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
12154 | name, value2, rec->obj->Name ENDF(G);
| ~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 34 and 1566 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12152:23: note: in expansion of macro 'PRINTF'
12152 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12057:29: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12057 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~ ~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output between 21 and 1298 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12057:11: note: in expansion of macro 'PRINTF'
12057 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~~~~~
layer2/ObjectVolume.cpp: In function 'ObjectMapState* ObjectVolumeStateGetMapState(ObjectVolumeState*)':
layer2/ObjectVolume.cpp:74:33: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
74 | "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName
| ^~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.10/Python.h:25,
from layer0/os_python.h:34,
from layer2/ObjectVolume.cpp:20:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'bool ExecutiveSetSymmetry(PyMOLGlobals*, pymol::zstring_view, int, const CSymmetry&, bool)':
layer3/Executive.cpp:5951:43: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 202 [-Wformat-truncation=]
5951 | " %s-Details: Updated symmetry for '%s'\n", __func__, obj->Name ENDFB(G);
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 56 and 311 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5950:7: note: in expansion of macro 'PRINTFB'
5950 | PRINTFB(G, FB_Executive, FB_Details)
| ^~~~~~~
layer3/Executive.cpp:5942:46: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=]
5942 | " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__,
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 84 and 339 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5941:7: note: in expansion of macro 'PRINTFB'
5941 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepAngle.cpp -o build/temp.linux-armhf-3.10/layer2/RepAngle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int, pymol::zstring_view)':
layer3/Executive.cpp:9358:53: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=]
9358 | " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 35 and 300 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9357:17: note: in expansion of macro 'PRINTFB'
9357 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp:9371:67: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=]
9371 | " Valence: %d bond valences adjusted in model \"%s\".\n", cnt,
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 49 and 314 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9370:17: note: in expansion of macro 'PRINTFB'
9370 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp:9383:59: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=]
9383 | " Unbond: %d bonds removed from model \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 41 and 306 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9382:17: note: in expansion of macro 'PRINTFB'
9382 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
In file included from /usr/include/c++/11/vector:72,
from layer0/MemoryDebug.h:21,
from layer4/Cmd.cpp:53:
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In function 'PyObject* CmdCifGetArray(PyObject*, PyObject*)':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/PlugIOManager.cpp -o build/temp.linux-armhf-3.10/layer3/PlugIOManager.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepCartoon.cpp -o build/temp.linux-armhf-3.10/layer2/RepCartoon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer4/Menu.cpp -o build/temp.linux-armhf-3.10/layer4/Menu.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, pymol::zstring_view, int, int, int)':
layer3/Executive.cpp:11877:70: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=]
11877 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 42 or more bytes (assuming 297) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11876:25: note: in expansion of macro 'PRINTF'
11876 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11877:70: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=]
11877 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 42 or more bytes (assuming 297) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11876:25: note: in expansion of macro 'PRINTF'
11876 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11788:42: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11788 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~
11789 | name, value, nObj, state + 1 ENDF(G);
| ~~~~~
layer3/Executive.cpp:11788:21: note: directive argument in the range [1, 2147483647]
11788 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:11788:21: note: directive argument in the range [1, 2147483647]
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 43 or more bytes (assuming 1084) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11787:19: note: in expansion of macro 'PRINTF'
11787 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11785:42: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11785 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
| ^~ ~~~~~
layer3/Executive.cpp:11785:21: note: directive argument in the range [1, 2147483647]
11785 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 34 or more bytes (assuming 1066) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11784:19: note: in expansion of macro 'PRINTF'
11784 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11909:46: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11909 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
11910 | name, value, rec->obj->Name, state + 1 ENDF(G);
| ~~~~~
layer3/Executive.cpp:11909:25: note: directive argument in the range [1, 2147483647]
11909 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 43 or more bytes (assuming 1330) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11908:23: note: in expansion of macro 'PRINTF'
11908 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11902:46: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11902 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
11903 | name, value, rec->obj->Name ENDF(G);
| ~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 34 or more bytes (assuming 1312) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11901:23: note: in expansion of macro 'PRINTF'
11901 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11744:39: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11744 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G);
| ^~ ~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 21 or more bytes (assuming 1044) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11744:11: note: in expansion of macro 'PRINTF'
11744 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G);
| ^~~~~~
layer3/Executive.cpp: In function 'void ExecutiveManageObject(PyMOLGlobals*, pymol::CObject*, int, int)':
layer3/Executive.cpp:14447:37: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
14447 | " Executive-Warning: name \"%s\" collides with a selection language keyword.\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 73 and 328 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:14446:7: note: in expansion of macro 'PRINTFB'
14446 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp:14442:36: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
14442 | " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 61 and 316 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:14441:7: note: in expansion of macro 'PRINTFB'
14441 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp:14473:11: warning: 'char* strcpy(char*, const char*)' writing between 1 and 256 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=]
14473 | strcpy(rec->name, obj->Name);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveCopy(PyMOLGlobals*, const char*, const char*, int)':
layer3/Executive.cpp:9665:25: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
9665 | " Executive: object %s created.\n", oDst->Name ENDFB(G);
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 30 and 285 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9664:3: note: in expansion of macro 'PRINTFB'
9664 | PRINTFB(G, FB_Executive, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp: In function 'void ExecutiveManageSelection(PyMOLGlobals*, const char*)':
layer3/Executive.cpp:14559:11: warning: 'char* strcpy(char*, const char*)' writing 1 or more bytes into a region of size 0 overflows the destination [-Wstringop-overflow=]
14559 | strcpy(rec->name, name);
| ~~~~~~^~~~~~~~~~~~~~~~~
layer3/PlugIOManager.cpp: In function 'pymol::CObject* PlugIOManagerLoad(PyMOLGlobals*, pymol::CObject**, const char*, int, int, const char*, int)':
layer3/PlugIOManager.cpp:946:65: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=]
946 | " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G);
| ^~
In file included from /usr/include/stdio.h:866,
from /usr/include/python3.10/Python.h:25,
from layer0/os_python.h:34,
from layer3/PlugIOManager.cpp:20:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 58 and 313 bytes into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In member function 'virtual int CExecutive::drag(int, int, int)':
layer3/Executive.cpp:15471:55: warning: '%s' directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=]
15471 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
| ^~
15472 | order_input, (location == -2) ? "upper" : "current");
| ~~~~~~~~~~~
layer3/Executive.cpp:15471:26: note: 'sprintf' output between 32 and 1057 bytes into a destination of size 1024
15471 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
15472 | order_input, (location == -2) ? "upper" : "current");
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer4/PopUp.cpp -o build/temp.linux-armhf-3.10/layer4/PopUp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/RingFinder.cpp -o build/temp.linux-armhf-3.10/layer3/RingFinder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveUnsetSetting(PyMOLGlobals*, int, pymol::zstring_view, int, int, int)':
layer3/Executive.cpp:12338:68: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=]
12338 | " Setting: %s unset for %d atoms in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 44 or more bytes (assuming 299) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12337:21: note: in expansion of macro 'PRINTF'
12337 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12360:57: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12360 | " Setting: %s unset in object \"%s\", state %d.\n",
| ^~
layer3/Executive.cpp:12360:25: note: directive argument in the range [1, 2147483647]
12360 | " Setting: %s unset in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 41 or more bytes (assuming 305) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12359:23: note: in expansion of macro 'PRINTF'
12359 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12354:57: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12354 | " Setting: %s unset in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: 'snprintf' output 32 or more bytes (assuming 287) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12353:23: note: in expansion of macro 'PRINTF'
12353 | PRINTF
| ^~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/Seeker.cpp -o build/temp.linux-armhf-3.10/layer3/Seeker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer5/PyMOL.cpp -o build/temp.linux-armhf-3.10/layer5/PyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Executive.cpp: In function 'int ExecutiveGroup(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, int, int)':
layer3/Executive.cpp:2259:40: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
2259 | " Executive: adding '%s' to group '%s'.\n", rec.name, rec.group_name
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 36 and 546 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:2258:17: note: in expansion of macro 'PRINTFB'
2258 | PRINTFB(G, FB_Executive, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp: In function 'pymol::Result<std::vector<DiscardedRec> > ExecutiveSetName(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, bool)':
layer3/Executive.cpp:3523:41: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 222 [-Wformat-truncation=]
3523 | " Warning: Invalid characters in '%s' have been replaced or stripped\n",
| ^~
3524 | name ENDFB(G);
| ~~~~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 67 and 322 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:3522:5: note: in expansion of macro 'PRINTFB'
3522 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)':
layer3/Executive.cpp:5070:57: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=]
5070 | " Executive: skipping unrecognized object \"%s\" of type %d.\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 56 and 321 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5069:11: note: in expansion of macro 'PRINTFB'
5069 | PRINTFB(G, FB_Executive, FB_Errors)
| ^~~~~~~
layer3/Executive.cpp:5095:58: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=]
5095 | "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G);
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29,
from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: 'snprintf' output between 49 and 304 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5094:9: note: in expansion of macro 'PRINTFB'
5094 | PRINTFB(G, FB_Executive, FB_Errors)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/Selector.cpp -o build/temp.linux-armhf-3.10/layer3/Selector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer5/TestPyMOL.cpp -o build/temp.linux-armhf-3.10/layer5/TestPyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Selector.cpp: In function 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)':
layer3/Selector.cpp:1722:70: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=]
1722 | " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n",
| ^~
In file included from /usr/include/stdio.h:866,
from /usr/include/c++/11/cstdio:42,
from /usr/include/c++/11/ext/string_conversions.h:43,
from /usr/include/c++/11/bits/basic_string.h:6608,
from /usr/include/c++/11/string:55,
from layer3/Selector.cpp:20:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 59 and 324 bytes into a destination of size 255
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/build/generated/ShaderText.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-armhf-3.10/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-armhf-3.10/layer0/Block.o build/temp.linux-armhf-3.10/layer0/CarveHelper.o build/temp.linux-armhf-3.10/layer0/ContourSurf.o build/temp.linux-armhf-3.10/layer0/Crystal.o build/temp.linux-armhf-3.10/layer0/Deferred.o build/temp.linux-armhf-3.10/layer0/Err.o build/temp.linux-armhf-3.10/layer0/Feedback.o build/temp.linux-armhf-3.10/layer0/Field.o build/temp.linux-armhf-3.10/layer0/File.o build/temp.linux-armhf-3.10/layer0/GenericBuffer.o build/temp.linux-armhf-3.10/layer0/GraphicsUtil.o build/temp.linux-armhf-3.10/layer0/Isosurf.o build/temp.linux-armhf-3.10/layer0/Map.o build/temp.linux-armhf-3.10/layer0/Match.o build/temp.linux-armhf-3.10/layer0/Matrix.o build/temp.linux-armhf-3.10/layer0/MemoryDebug.o build/temp.linux-armhf-3.10/layer0/MemoryUsage.o build/temp.linux-armhf-3.10/layer0/MyPNG.o build/temp.linux-armhf-3.10/layer0/Parse.o build/temp.linux-armhf-3.10/layer0/Pixmap.o build/temp.linux-armhf-3.10/layer0/PostProcess.o build/temp.linux-armhf-3.10/layer0/ShaderMgr.o build/temp.linux-armhf-3.10/layer0/ShaderPrg.o build/temp.linux-armhf-3.10/layer0/Sphere.o build/temp.linux-armhf-3.10/layer0/Tetsurf.o build/temp.linux-armhf-3.10/layer0/Texture.o build/temp.linux-armhf-3.10/layer0/Tracker.o build/temp.linux-armhf-3.10/layer0/Triangle.o build/temp.linux-armhf-3.10/layer0/Util.o build/temp.linux-armhf-3.10/layer0/Util2.o build/temp.linux-armhf-3.10/layer0/Vector.o build/temp.linux-armhf-3.10/layer0/Word.o build/temp.linux-armhf-3.10/layer0/ccealignmodule.o build/temp.linux-armhf-3.10/layer0/marching_cubes.o build/temp.linux-armhf-3.10/layer0/os_gl.o build/temp.linux-armhf-3.10/layer1/Basis.o build/temp.linux-armhf-3.10/layer1/ButMode.o build/temp.linux-armhf-3.10/layer1/CGO.o build/temp.linux-armhf-3.10/layer1/COLLADA.o build/temp.linux-armhf-3.10/layer1/Character.o build/temp.linux-armhf-3.10/layer1/Color.o build/temp.linux-armhf-3.10/layer1/Control.o build/temp.linux-armhf-3.10/layer1/Extrude.o build/temp.linux-armhf-3.10/layer1/Font.o build/temp.linux-armhf-3.10/layer1/FontGLUT.o build/temp.linux-armhf-3.10/layer1/FontGLUT8x13.o build/temp.linux-armhf-3.10/layer1/FontGLUT9x15.o build/temp.linux-armhf-3.10/layer1/FontGLUTHel10.o build/temp.linux-armhf-3.10/layer1/FontGLUTHel12.o build/temp.linux-armhf-3.10/layer1/FontGLUTHel18.o build/temp.linux-armhf-3.10/layer1/FontType.o build/temp.linux-armhf-3.10/layer1/Movie.o build/temp.linux-armhf-3.10/layer1/Ortho.o build/temp.linux-armhf-3.10/layer1/P.o build/temp.linux-armhf-3.10/layer1/PConv.o build/temp.linux-armhf-3.10/layer1/Picking.o build/temp.linux-armhf-3.10/layer1/Pop.o build/temp.linux-armhf-3.10/layer1/PyMOLObject.o build/temp.linux-armhf-3.10/layer1/Ray.o build/temp.linux-armhf-3.10/layer1/Rep.o build/temp.linux-armhf-3.10/layer1/Scene.o build/temp.linux-armhf-3.10/layer1/SceneMouse.o build/temp.linux-armhf-3.10/layer1/ScenePicking.o build/temp.linux-armhf-3.10/layer1/SceneRay.o build/temp.linux-armhf-3.10/layer1/SceneRender.o build/temp.linux-armhf-3.10/layer1/ScrollBar.o build/temp.linux-armhf-3.10/layer1/Seq.o build/temp.linux-armhf-3.10/layer1/Setting.o build/temp.linux-armhf-3.10/layer1/Shaker.o build/temp.linux-armhf-3.10/layer1/SymOp.o build/temp.linux-armhf-3.10/layer1/SymOpPConv.o build/temp.linux-armhf-3.10/layer1/SymOpTools.o build/temp.linux-armhf-3.10/layer1/Symmetry.o build/temp.linux-armhf-3.10/layer1/Text.o build/temp.linux-armhf-3.10/layer1/TypeFace.o build/temp.linux-armhf-3.10/layer1/View.o build/temp.linux-armhf-3.10/layer1/Wizard.o build/temp.linux-armhf-3.10/layer2/AssemblyHelpers.o build/temp.linux-armhf-3.10/layer2/AtomInfo.o build/temp.linux-armhf-3.10/layer2/AtomInfoHistory.o build/temp.linux-armhf-3.10/layer2/BondTypeHistory.o build/temp.linux-armhf-3.10/layer2/CifFile.o build/temp.linux-armhf-3.10/layer2/CifMoleculeReader.o build/temp.linux-armhf-3.10/layer2/CoordSet.o build/temp.linux-armhf-3.10/layer2/DistSet.o build/temp.linux-armhf-3.10/layer2/GadgetSet.o build/temp.linux-armhf-3.10/layer2/HydrogenAdder.o build/temp.linux-armhf-3.10/layer2/MmodTyping.o build/temp.linux-armhf-3.10/layer2/MmtfMoleculeReader.o build/temp.linux-armhf-3.10/layer2/Mol2Typing.o build/temp.linux-armhf-3.10/layer2/MolV3000.o build/temp.linux-armhf-3.10/layer2/ObjectAlignment.o build/temp.linux-armhf-3.10/layer2/ObjectCGO.o build/temp.linux-armhf-3.10/layer2/ObjectCallback.o build/temp.linux-armhf-3.10/layer2/ObjectDist.o build/temp.linux-armhf-3.10/layer2/ObjectGadget.o build/temp.linux-armhf-3.10/layer2/ObjectGadgetRamp.o build/temp.linux-armhf-3.10/layer2/ObjectGroup.o build/temp.linux-armhf-3.10/layer2/ObjectMap.o build/temp.linux-armhf-3.10/layer2/ObjectMesh.o build/temp.linux-armhf-3.10/layer2/ObjectMolecule.o build/temp.linux-armhf-3.10/layer2/ObjectMolecule2.o build/temp.linux-armhf-3.10/layer2/ObjectMolecule3.o build/temp.linux-armhf-3.10/layer2/ObjectSlice.o build/temp.linux-armhf-3.10/layer2/ObjectSurface.o build/temp.linux-armhf-3.10/layer2/ObjectVolume.o build/temp.linux-armhf-3.10/layer2/RepAngle.o build/temp.linux-armhf-3.10/layer2/RepCartoon.o build/temp.linux-armhf-3.10/layer2/RepCylBond.o build/temp.linux-armhf-3.10/layer2/RepDihedral.o build/temp.linux-armhf-3.10/layer2/RepDistDash.o build/temp.linux-armhf-3.10/layer2/RepDistLabel.o build/temp.linux-armhf-3.10/layer2/RepDot.o build/temp.linux-armhf-3.10/layer2/RepEllipsoid.o build/temp.linux-armhf-3.10/layer2/RepLabel.o build/temp.linux-armhf-3.10/layer2/RepMesh.o build/temp.linux-armhf-3.10/layer2/RepNonbonded.o build/temp.linux-armhf-3.10/layer2/RepNonbondedSphere.o build/temp.linux-armhf-3.10/layer2/RepRibbon.o build/temp.linux-armhf-3.10/layer2/RepSphere.o build/temp.linux-armhf-3.10/layer2/RepSphereGenerate.o build/temp.linux-armhf-3.10/layer2/RepSphereImmediate.o build/temp.linux-armhf-3.10/layer2/RepSurface.o build/temp.linux-armhf-3.10/layer2/RepWireBond.o build/temp.linux-armhf-3.10/layer2/Sculpt.o build/temp.linux-armhf-3.10/layer2/SculptCache.o build/temp.linux-armhf-3.10/layer2/SideChainHelper.o build/temp.linux-armhf-3.10/layer2/VFont.o build/temp.linux-armhf-3.10/layer3/AtomIterators.o build/temp.linux-armhf-3.10/layer3/CifDataValueFormatter.o build/temp.linux-armhf-3.10/layer3/Editor.o build/temp.linux-armhf-3.10/layer3/Executive.o build/temp.linux-armhf-3.10/layer3/ExecutivePython.o build/temp.linux-armhf-3.10/layer3/MaeExportHelpers.o build/temp.linux-armhf-3.10/layer3/MoleculeExporter.o build/temp.linux-armhf-3.10/layer3/MovieScene.o build/temp.linux-armhf-3.10/layer3/PlugIOManager.o build/temp.linux-armhf-3.10/layer3/RingFinder.o build/temp.linux-armhf-3.10/layer3/Seeker.o build/temp.linux-armhf-3.10/layer3/Selector.o build/temp.linux-armhf-3.10/layer3/SelectorTmp.o build/temp.linux-armhf-3.10/layer3/SpecRec.o build/temp.linux-armhf-3.10/layer3/SpecRecSpecial.o build/temp.linux-armhf-3.10/layer4/Cmd.o build/temp.linux-armhf-3.10/layer4/Menu.o build/temp.linux-armhf-3.10/layer4/PopUp.o build/temp.linux-armhf-3.10/layer5/PyMOL.o build/temp.linux-armhf-3.10/layer5/TestPyMOL.o build/temp.linux-armhf-3.10/layer5/main.o build/temp.linux-armhf-3.10/ov/src/OVContext.o build/temp.linux-armhf-3.10/ov/src/OVHeap.o build/temp.linux-armhf-3.10/ov/src/OVHeapArray.o build/temp.linux-armhf-3.10/ov/src/OVLexicon.o build/temp.linux-armhf-3.10/ov/src/OVOneToAny.o build/temp.linux-armhf-3.10/ov/src/OVOneToOne.o build/temp.linux-armhf-3.10/ov/src/OVRandom.o build/temp.linux-armhf-3.10/ov/src/ov_utility.o -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -o /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/_cmd.cpython-310-arm-linux-gnueabihf.so -fopenmp
building 'chempy.champ._champ' extension
creating build/temp.linux-armhf-3.10/contrib/champ
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.10 -c -MMD contrib/champ/champ.c -o build/temp.linux-armhf-3.10/contrib/champ/champ.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.10 -c -MMD contrib/champ/champ_module.c -o build/temp.linux-armhf-3.10/contrib/champ/champ_module.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.10 -c -MMD contrib/champ/chiral.c -o build/temp.linux-armhf-3.10/contrib/champ/chiral.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.10 -c -MMD contrib/champ/err2.c -o build/temp.linux-armhf-3.10/contrib/champ/err2.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.10 -c -MMD contrib/champ/list.c -o build/temp.linux-armhf-3.10/contrib/champ/list.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.10 -c -MMD contrib/champ/os_memory.c -o build/temp.linux-armhf-3.10/contrib/champ/os_memory.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.10 -c -MMD contrib/champ/feedback2.c -o build/temp.linux-armhf-3.10/contrib/champ/feedback2.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.10 -c -MMD contrib/champ/sort.c -o build/temp.linux-armhf-3.10/contrib/champ/sort.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.10 -c -MMD contrib/champ/strblock.c -o build/temp.linux-armhf-3.10/contrib/champ/strblock.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.10 -c -MMD contrib/champ/vla.c -o build/temp.linux-armhf-3.10/contrib/champ/vla.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/contrib/champ/champ.o build/temp.linux-armhf-3.10/contrib/champ/champ_module.o build/temp.linux-armhf-3.10/contrib/champ/chiral.o build/temp.linux-armhf-3.10/contrib/champ/err2.o build/temp.linux-armhf-3.10/contrib/champ/feedback2.o build/temp.linux-armhf-3.10/contrib/champ/list.o build/temp.linux-armhf-3.10/contrib/champ/os_memory.o build/temp.linux-armhf-3.10/contrib/champ/sort.o build/temp.linux-armhf-3.10/contrib/champ/strblock.o build/temp.linux-armhf-3.10/contrib/champ/vla.o -o /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/champ/_champ.cpython-310-arm-linux-gnueabihf.so
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/pymol-2.5.0+dfsg'
echo "FIXME: Test ends up with: AttributeError: module 'pymol' has no attribute 'start_pymol'"
FIXME: Test ends up with: AttributeError: module 'pymol' has no attribute 'start_pymol'
echo "Unfortunately upstream has removed the script that was used for testing from upstream source"
Unfortunately upstream has removed the script that was used for testing from upstream source
make[1]: Leaving directory '/<<BUILDDIR>>/pymol-2.5.0+dfsg'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:239: /usr/bin/python3.9 setup.py install --root /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol
running install
running build
running build_py
running build_ext
running install_lib
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/arc.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bond_amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bond_mmff.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bonds.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/brick.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/cc1.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/charge.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/cif.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/cpv.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/dictdb.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/gamess1.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/gms.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/hetatm.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/io.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/lst.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mae.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/map.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mass.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmd.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/models.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mol.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mol2.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/neighbor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/pdb.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/pkl.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/place.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein_amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein_amber99.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein_mmff.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein_residues.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/sdf.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/solvate.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/water_amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/water_residues.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/xyz.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/commands.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/realtime.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/state.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/util.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/amber99.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/assign.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/formal_charges.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/_champ.cpython-39-arm-linux-gnueabihf.so -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fast
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fast/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fast
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fragments
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fragments/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fragments
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf/io.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/keyword.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/realtime.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/state.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/TextEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/advanced_settings_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/builder.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/file_dialogs.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/keymapping.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/mimic_pmg_tk.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/mimic_tk.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/properties_dialog.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/pymol_gl_widget.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/pymol_qt_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/shortcut_menu_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/volume.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/askpartial.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/change_confirm.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/colors.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/create_shortcut.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/fetch.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/help_shortcut.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_aln.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_mae.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_map.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_mtz.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_traj.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/movieexport.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/pluginitem.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/pluginmanager.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/png.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/props.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/render.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/save_molecule.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/save_object.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/shortcut_menu.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/pml.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/pmlparser.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/python.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/ColorEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/Demo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/PMGApp.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/PyMOLMapLoad.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/SetEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/Setting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/TextEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/volume.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/demo
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/demo/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/demo
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal/ModalWindow.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal/builder.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/startup
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/startup
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/__main__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/api.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/callback.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/cgo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/checking.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/cmd.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/colorprinting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/colorramping.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/commanding.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/completing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/computing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/constants.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/constants_palette.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/controlling.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/creating.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/diagnosing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/editing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/editor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/experimenting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/exporting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/externing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/feedingback.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/fitting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/headering.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/helping.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/importing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/internal.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/invocation.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/keyboard.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/keywords.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/lazyio.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/locking.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/menu.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/monitoring.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/morphing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/movie.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/moving.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/mpeg_encode.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/parser.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/parsing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/preset.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/pymolhttpd.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/querying.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/rpc.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/save_shortcut.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/selecting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/selector.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/seqalign.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/setting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/shortcut.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/shortcut_dict.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/shortcut_manager.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/util.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/vfont.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/viewing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizarding.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/xray.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/xwin.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/povray.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt/utils.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/installation.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/legacysupport.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/managergui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/managergui_qt.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/repository.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/stereochemistry
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/stereochemistry/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/stereochemistry
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/annotation.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/appearance.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/benchmark.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/box.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/charge.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/cleanup.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/command.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/demo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/density.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/distance.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/dragging.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/filter.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/label.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/measurement.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/message.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/mutagenesis.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/nucmutagenesis.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/openvr.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/pair_fit.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/pseudoatom.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/renaming.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/sculpting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/security.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/stereodemo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/toggle.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/_cmd.cpython-39-arm-linux-gnueabihf.so -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2/cmd2.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/arc.py to arc.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bond_amber.py to bond_amber.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bond_mmff.py to bond_mmff.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bonds.py to bonds.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/brick.py to brick.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/cc1.py to cc1.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/charge.py to charge.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/cif.py to cif.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/cpv.py to cpv.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/dictdb.py to dictdb.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/gamess1.py to gamess1.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/gms.py to gms.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/hetatm.py to hetatm.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/io.py to io.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/lst.py to lst.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mae.py to mae.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/map.py to map.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mass.py to mass.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmd.py to mmd.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/models.py to models.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mol.py to mol.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mol2.py to mol2.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/neighbor.py to neighbor.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/pdb.py to pdb.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/pkl.py to pkl.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/place.py to place.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein.py to protein.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_amber.py to protein_amber.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_amber99.py to protein_amber99.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_mmff.py to protein_mmff.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_residues.py to protein_residues.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/sdf.py to sdf.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/solvate.py to solvate.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/water_amber.py to water_amber.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/water_residues.py to water_residues.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/xyz.py to xyz.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/commands.py to commands.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/realtime.py to realtime.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/state.py to state.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/util.py to util.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/amber99.py to amber99.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/assign.py to assign.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/formal_charges.py to formal_charges.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fast/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fragments/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf/io.py to io.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/amber.py to amber.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/keyword.py to keyword.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/realtime.py to realtime.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/state.py to state.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/TextEditor.py to TextEditor.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/builder.py to builder.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/keymapping.py to keymapping.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/mimic_tk.py to mimic_tk.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/shortcut_menu_gui.py to shortcut_menu_gui.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/volume.py to volume.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax/pml.py to pml.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax/pmlparser.py to pmlparser.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax/python.py to python.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/ColorEditor.py to ColorEditor.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/Demo.py to Demo.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/PMGApp.py to PMGApp.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/SetEditor.py to SetEditor.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/Setting.py to Setting.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/TextEditor.py to TextEditor.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/volume.py to volume.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal/builder.py to builder.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/startup/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/__main__.py to __main__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/_gui.py to _gui.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/api.py to api.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/callback.py to callback.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/cgo.py to cgo.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/checking.py to checking.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/cmd.py to cmd.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/colorprinting.py to colorprinting.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/colorramping.py to colorramping.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/commanding.py to commanding.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/completing.py to completing.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/computing.py to computing.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/constants.py to constants.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/constants_palette.py to constants_palette.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/controlling.py to controlling.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/creating.py to creating.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/diagnosing.py to diagnosing.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/editing.py to editing.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/editor.py to editor.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/experimenting.py to experimenting.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/exporting.py to exporting.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/externing.py to externing.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/feedingback.py to feedingback.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/fitting.py to fitting.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/gui.py to gui.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/headering.py to headering.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/helping.py to helping.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/importing.py to importing.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/internal.py to internal.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/invocation.py to invocation.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/keyboard.py to keyboard.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/keywords.py to keywords.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/lazyio.py to lazyio.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/locking.py to locking.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/menu.py to menu.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/monitoring.py to monitoring.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/morphing.py to morphing.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/movie.py to movie.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/moving.py to moving.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/mpeg_encode.py to mpeg_encode.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/parser.py to parser.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/parsing.py to parsing.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/preset.py to preset.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/pymolhttpd.py to pymolhttpd.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/querying.py to querying.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/rpc.py to rpc.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/save_shortcut.py to save_shortcut.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/selecting.py to selecting.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/selector.py to selector.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/seqalign.py to seqalign.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/setting.py to setting.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/shortcut.py to shortcut.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/shortcut_dict.py to shortcut_dict.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/shortcut_manager.py to shortcut_manager.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/util.py to util.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/vfont.py to vfont.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/viewing.py to viewing.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizarding.py to wizarding.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/xray.py to xray.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/xwin.py to xwin.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/povray.py to povray.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt/utils.py to utils.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/installation.py to installation.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/legacysupport.py to legacysupport.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/managergui.py to managergui.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/managergui_qt.py to managergui_qt.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/repository.py to repository.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/stereochemistry/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/annotation.py to annotation.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/appearance.py to appearance.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/benchmark.py to benchmark.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/box.py to box.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/charge.py to charge.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/cleanup.py to cleanup.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/command.py to command.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/demo.py to demo.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/density.py to density.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/distance.py to distance.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/dragging.py to dragging.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/filter.py to filter.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/label.py to label.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/measurement.py to measurement.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/message.py to message.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/mutagenesis.py to mutagenesis.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/openvr.py to openvr.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/pair_fit.py to pair_fit.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/pseudoatom.py to pseudoatom.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/renaming.py to renaming.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/sculpting.py to sculpting.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/security.py to security.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/stereodemo.py to stereodemo.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/toggle.py to toggle.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2/cmd2.py to cmd2.cpython-39.pyc
running install_egg_info
Writing /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol-2.5.0.egg-info
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/bin
I: pybuild base:239: /usr/bin/python3 setup.py install --root /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol
/<<BUILDDIR>>/pymol-2.5.0+dfsg/setup.py:9: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
from distutils.core import setup, Extension
running install
running build
running build_py
running build_ext
running install_lib
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/arc.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bond_amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bond_mmff.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bonds.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/brick.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/cc1.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/charge.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/cif.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/cpv.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/dictdb.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/gamess1.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/gms.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/hetatm.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/io.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/lst.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/mae.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/map.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/mass.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/mmd.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/models.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/mol.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/mol2.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/neighbor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/pdb.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/pkl.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/place.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/protein.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/protein_amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/protein_amber99.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/protein_mmff.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/protein_residues.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/sdf.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/solvate.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/water_amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/water_residues.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/xyz.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bmin
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bmin/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bmin
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bmin/commands.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bmin
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bmin/realtime.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bmin
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bmin/state.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bmin
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bmin/util.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bmin
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/champ
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/champ/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/champ
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/champ/amber99.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/champ
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/champ/assign.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/champ
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/champ/formal_charges.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/champ
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/champ/_champ.cpython-310-arm-linux-gnueabihf.so -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/champ
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/fast
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/fast/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/fast
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/fragments
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/fragments/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/fragments
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/mmtf
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/mmtf/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/mmtf
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/mmtf/io.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/mmtf
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/tinker
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/tinker/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/tinker
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/tinker/amber.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/tinker
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/tinker/keyword.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/tinker
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/tinker/realtime.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/tinker
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/tinker/state.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/tinker
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/TextEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/advanced_settings_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/builder.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/file_dialogs.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/keymapping.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/mimic_pmg_tk.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/mimic_tk.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/properties_dialog.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/pymol_gl_widget.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/pymol_qt_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/shortcut_menu_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/volume.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/askpartial.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/change_confirm.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/colors.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/create_shortcut.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/fetch.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/help_shortcut.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/load_aln.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/load_mae.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/load_map.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/load_mtz.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/load_traj.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/movieexport.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/pluginitem.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/pluginmanager.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/png.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/props.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/render.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/save_molecule.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/save_object.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/shortcut_menu.ui -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/syntax
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/syntax/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/syntax
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/syntax/pml.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/syntax
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/syntax/pmlparser.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/syntax
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/syntax/python.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/syntax
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/ColorEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/Demo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/PMGApp.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/PyMOLMapLoad.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/SetEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/Setting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/TextEditor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/volume.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins/demo
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins/demo/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins/demo
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins/normal
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins/normal/ModalWindow.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins/normal
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins/normal/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins/normal
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins/normal/builder.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins/normal
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/startup
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/startup/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/startup
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/__main__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/_gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/api.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/callback.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/cgo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/checking.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/cmd.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/colorprinting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/colorramping.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/commanding.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/completing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/computing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/constants.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/constants_palette.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/controlling.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/creating.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/diagnosing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/editing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/editor.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/experimenting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/exporting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/externing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/feedingback.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/fitting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/gui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/headering.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/helping.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/importing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/internal.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/invocation.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/keyboard.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/keywords.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/lazyio.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/locking.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/menu.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/monitoring.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/morphing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/movie.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/moving.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/mpeg_encode.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/parser.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/parsing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/preset.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/pymolhttpd.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/querying.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/rpc.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/save_shortcut.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/selecting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/selector.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/seqalign.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/setting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/shortcut.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/shortcut_dict.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/shortcut_manager.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/util.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/vfont.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/viewing.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizarding.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/xray.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/xwin.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/povray.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/Qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/Qt/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/Qt
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/Qt/utils.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/Qt
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins/installation.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins/legacysupport.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins/managergui.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins/managergui_qt.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins/repository.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/stereochemistry
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/stereochemistry/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/stereochemistry
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/annotation.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/appearance.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/benchmark.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/box.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/charge.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/cleanup.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/command.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/demo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/density.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/distance.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/dragging.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/filter.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/label.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/measurement.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/message.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/mutagenesis.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/nucmutagenesis.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/openvr.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/pair_fit.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/pseudoatom.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/renaming.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/sculpting.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/security.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/stereodemo.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/toggle.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/_cmd.cpython-310-arm-linux-gnueabihf.so -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol
creating /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol2
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol2/__init__.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol2
copying /<<BUILDDIR>>/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol2/cmd2.py -> /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol2
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/arc.py to arc.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bond_amber.py to bond_amber.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bond_mmff.py to bond_mmff.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bonds.py to bonds.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/brick.py to brick.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/cc1.py to cc1.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/charge.py to charge.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/cif.py to cif.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/cpv.py to cpv.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/dictdb.py to dictdb.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/gamess1.py to gamess1.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/gms.py to gms.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/hetatm.py to hetatm.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/io.py to io.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/lst.py to lst.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/mae.py to mae.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/map.py to map.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/mass.py to mass.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/mmd.py to mmd.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/models.py to models.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/mol.py to mol.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/mol2.py to mol2.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/neighbor.py to neighbor.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/pdb.py to pdb.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/pkl.py to pkl.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/place.py to place.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/protein.py to protein.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/protein_amber.py to protein_amber.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/protein_amber99.py to protein_amber99.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/protein_mmff.py to protein_mmff.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/protein_residues.py to protein_residues.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/sdf.py to sdf.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/solvate.py to solvate.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/water_amber.py to water_amber.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/water_residues.py to water_residues.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/xyz.py to xyz.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bmin/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bmin/commands.py to commands.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bmin/realtime.py to realtime.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bmin/state.py to state.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bmin/util.py to util.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/champ/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/champ/amber99.py to amber99.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/champ/assign.py to assign.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/champ/formal_charges.py to formal_charges.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/fast/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/fragments/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/mmtf/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/mmtf/io.py to io.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/tinker/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/tinker/amber.py to amber.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/tinker/keyword.py to keyword.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/tinker/realtime.py to realtime.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/tinker/state.py to state.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/TextEditor.py to TextEditor.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/builder.py to builder.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/keymapping.py to keymapping.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/mimic_tk.py to mimic_tk.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/shortcut_menu_gui.py to shortcut_menu_gui.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/volume.py to volume.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/syntax/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/syntax/pml.py to pml.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/syntax/pmlparser.py to pmlparser.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/syntax/python.py to python.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/ColorEditor.py to ColorEditor.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/Demo.py to Demo.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/PMGApp.py to PMGApp.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/SetEditor.py to SetEditor.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/Setting.py to Setting.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/TextEditor.py to TextEditor.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/volume.py to volume.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins/normal/builder.py to builder.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/startup/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/__main__.py to __main__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/_gui.py to _gui.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/api.py to api.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/callback.py to callback.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/cgo.py to cgo.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/checking.py to checking.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/cmd.py to cmd.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/colorprinting.py to colorprinting.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/colorramping.py to colorramping.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/commanding.py to commanding.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/completing.py to completing.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/computing.py to computing.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/constants.py to constants.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/constants_palette.py to constants_palette.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/controlling.py to controlling.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/creating.py to creating.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/diagnosing.py to diagnosing.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/editing.py to editing.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/editor.py to editor.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/experimenting.py to experimenting.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/exporting.py to exporting.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/externing.py to externing.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/feedingback.py to feedingback.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/fitting.py to fitting.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/gui.py to gui.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/headering.py to headering.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/helping.py to helping.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/importing.py to importing.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/internal.py to internal.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/invocation.py to invocation.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/keyboard.py to keyboard.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/keywords.py to keywords.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/lazyio.py to lazyio.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/locking.py to locking.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/menu.py to menu.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/monitoring.py to monitoring.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/morphing.py to morphing.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/movie.py to movie.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/moving.py to moving.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/mpeg_encode.py to mpeg_encode.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/parser.py to parser.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/parsing.py to parsing.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/preset.py to preset.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/pymolhttpd.py to pymolhttpd.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/querying.py to querying.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/rpc.py to rpc.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/save_shortcut.py to save_shortcut.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/selecting.py to selecting.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/selector.py to selector.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/seqalign.py to seqalign.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/setting.py to setting.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/shortcut.py to shortcut.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/shortcut_dict.py to shortcut_dict.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/shortcut_manager.py to shortcut_manager.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/util.py to util.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/vfont.py to vfont.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/viewing.py to viewing.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizarding.py to wizarding.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/xray.py to xray.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/xwin.py to xwin.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/povray.py to povray.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/Qt/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/Qt/utils.py to utils.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins/installation.py to installation.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins/legacysupport.py to legacysupport.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins/managergui.py to managergui.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins/managergui_qt.py to managergui_qt.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins/repository.py to repository.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/stereochemistry/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/annotation.py to annotation.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/appearance.py to appearance.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/benchmark.py to benchmark.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/box.py to box.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/charge.py to charge.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/cleanup.py to cleanup.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/command.py to command.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/demo.py to demo.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/density.py to density.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/distance.py to distance.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/dragging.py to dragging.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/filter.py to filter.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/label.py to label.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/measurement.py to measurement.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/message.py to message.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/mutagenesis.py to mutagenesis.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/openvr.py to openvr.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/pair_fit.py to pair_fit.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/pseudoatom.py to pseudoatom.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/renaming.py to renaming.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/sculpting.py to sculpting.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/security.py to security.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/stereodemo.py to stereodemo.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/toggle.py to toggle.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol2/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol2/cmd2.py to cmd2.cpython-310.pyc
running install_egg_info
Writing /<<BUILDDIR>>/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol-2.5.0.egg-info
debian/rules override_dh_install-arch
make[1]: Entering directory '/<<BUILDDIR>>/pymol-2.5.0+dfsg'
dh_numpy3
dh_install
rm -rf debian/python*pymol/usr/bin
make[1]: Leaving directory '/<<BUILDDIR>>/pymol-2.5.0+dfsg'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installexamples -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
debian/rules override_dh_compress
make[1]: Entering directory '/<<BUILDDIR>>/pymol-2.5.0+dfsg'
dh_compress -Xpdb
make[1]: Leaving directory '/<<BUILDDIR>>/pymol-2.5.0+dfsg'
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pymol' in '../python3-pymol_2.5.0+dfsg-1+b1_armhf.deb'.
dpkg-deb: building package 'python3-pymol-dbgsym' in '../python3-pymol-dbgsym_2.5.0+dfsg-1+b1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../pymol_2.5.0+dfsg-1+b1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../pymol_2.5.0+dfsg-1+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-04-20T16:29:33Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
pymol_2.5.0+dfsg-1+b1_armhf.changes:
------------------------------------
Format: 1.8
Date: Wed, 15 Dec 2021 16:51:43 +0100
Source: pymol (2.5.0+dfsg-1)
Binary: python3-pymol python3-pymol-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 2.5.0+dfsg-1+b1
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
python3-pymol - Molecular Graphics System (Python 3 modules)
Changes:
pymol (2.5.0+dfsg-1+b1) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
87b2780301b5d94a070d05a17c4d0890be852e24 12541 pymol_2.5.0+dfsg-1+b1_armhf.buildinfo
e4ad5464b80192e42e1f7d20ccacbe8564b036eb 29359116 python3-pymol-dbgsym_2.5.0+dfsg-1+b1_armhf.deb
28bd137f24fe48b2dd7c3707c01033f87326f9fd 5951048 python3-pymol_2.5.0+dfsg-1+b1_armhf.deb
Checksums-Sha256:
e2c531335be3aac987f7e62e0722e82515c62ae3cb55673122b32b47b6908119 12541 pymol_2.5.0+dfsg-1+b1_armhf.buildinfo
c1c0b16ae4a98468c152b8b1ada9f648c16d1914602740c0b6d9626bae2aee0e 29359116 python3-pymol-dbgsym_2.5.0+dfsg-1+b1_armhf.deb
3387e9704d6ac83102275d1494bad9a369fd01e47dc4b0f0736398d1d4a85225 5951048 python3-pymol_2.5.0+dfsg-1+b1_armhf.deb
Files:
e75fe2d287e874052e0f676137cd0cf6 12541 science optional pymol_2.5.0+dfsg-1+b1_armhf.buildinfo
4d020687ef8d14bf8da31dbe4db8c056 29359116 debug optional python3-pymol-dbgsym_2.5.0+dfsg-1+b1_armhf.deb
c4fc2d7cf98a3c2ea655d25921d0a0b0 5951048 python optional python3-pymol_2.5.0+dfsg-1+b1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-pymol-dbgsym_2.5.0+dfsg-1+b1_armhf.deb
----------------------------------------------
new Debian package, version 2.0.
size 29359116 bytes: control archive=768 bytes.
524 bytes, 12 lines control
517 bytes, 5 lines md5sums
Package: python3-pymol-dbgsym
Source: pymol (2.5.0+dfsg-1)
Version: 2.5.0+dfsg-1+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 29744
Depends: python3-pymol (= 2.5.0+dfsg-1+b1)
Section: debug
Priority: optional
Description: debug symbols for python3-pymol
Build-Ids: 79bb1456ba0c07a0e4bb65b707e3d0164dc7c446 9ddd3aea6c18eed67e5bbb2cd34cb92f38c4e823 c233d0c790fc53fac21fbc2767555d086ae5ee4c f6f285f000a84eab521fda48abf367180ee5f362
drwxr-xr-x root/root 0 2021-12-15 15:51 ./
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/debug/.build-id/79/
-rw-r--r-- root/root 12931452 2021-12-15 15:51 ./usr/lib/debug/.build-id/79/bb1456ba0c07a0e4bb65b707e3d0164dc7c446.debug
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/debug/.build-id/9d/
-rw-r--r-- root/root 12941072 2021-12-15 15:51 ./usr/lib/debug/.build-id/9d/dd3aea6c18eed67e5bbb2cd34cb92f38c4e823.debug
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/debug/.build-id/c2/
-rw-r--r-- root/root 97260 2021-12-15 15:51 ./usr/lib/debug/.build-id/c2/33d0c790fc53fac21fbc2767555d086ae5ee4c.debug
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/debug/.build-id/f6/
-rw-r--r-- root/root 97364 2021-12-15 15:51 ./usr/lib/debug/.build-id/f6/f285f000a84eab521fda48abf367180ee5f362.debug
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 4373216 2021-12-15 15:51 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-pymol.debug
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/share/
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-12-15 15:51 ./usr/share/doc/python3-pymol-dbgsym -> python3-pymol
python3-pymol_2.5.0+dfsg-1+b1_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 5951048 bytes: control archive=6856 bytes.
1332 bytes, 26 lines control
18598 bytes, 217 lines md5sums
273 bytes, 12 lines * postinst #!/bin/sh
417 bytes, 12 lines * prerm #!/bin/sh
Package: python3-pymol
Source: pymol (2.5.0+dfsg-1)
Version: 2.5.0+dfsg-1+b1
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 20578
Depends: python3-numpy (>= 1:1.20.0), python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, python3-numpy-abi9, python3 (<< 3.11), python3 (>= 3.9~), python3:any, libc6 (>= 2.33), libfreetype6 (>= 2.2.1), libgcc-s1 (>= 3.5), libgl1, libglew2.2 (>= 2.2.0-4), libgomp1 (>= 4.9), libnetcdf19 (>= 3.6.1), libpng16-16 (>= 1.6.2-1), libstdc++6 (>= 11), libxml2 (>= 2.7.4), pymol-data (= 2.5.0+dfsg-1)
Section: python
Priority: optional
Homepage: https://www.pymol.org
Description: Molecular Graphics System (Python 3 modules)
PyMOL is a molecular graphics system targeted at medium to large
biomolecules like proteins. It can generate high-quality publication-ready
molecular graphics images and animations.
.
Features include:
* Visualization of molecules, molecular trajectories and surfaces
of crystallography data or orbitals
* Molecular builder and sculptor
* Internal raytracer and movie generator
* Fully extensible and scriptable via a Python interface
.
File formats PyMOL can read include PDB, XYZ, CIF, MDL Molfile, ChemDraw,
CCP4 maps, XPLOR maps and Gaussian cube maps.
.
This package contains the Python 3 modules.
drwxr-xr-x root/root 0 2021-12-15 15:51 ./
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/chempy/
-rw-r--r-- root/root 15991 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/__init__.py
-rw-r--r-- root/root 1354 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/arc.py
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/chempy/bmin/
-rw-r--r-- root/root 1413 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/bmin/__init__.py
-rw-r--r-- root/root 1233 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/bmin/commands.py
-rw-r--r-- root/root 3230 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/bmin/realtime.py
-rw-r--r-- root/root 3148 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/bmin/state.py
-rw-r--r-- root/root 1673 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/bmin/util.py
-rw-r--r-- root/root 4747 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/bond_amber.py
-rw-r--r-- root/root 4205 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/bond_mmff.py
-rw-r--r-- root/root 24301 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/bonds.py
-rw-r--r-- root/root 2038 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/brick.py
-rw-r--r-- root/root 2130 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/cc1.py
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/chempy/champ/
-rw-r--r-- root/root 9411 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/champ/__init__.py
-rw-r--r-- root/root 75720 2021-12-15 15:51 ./usr/lib/python3/dist-packages/chempy/champ/_champ.cpython-310-arm-linux-gnueabihf.so
-rw-r--r-- root/root 75720 2021-12-15 15:51 ./usr/lib/python3/dist-packages/chempy/champ/_champ.cpython-39-arm-linux-gnueabihf.so
-rw-r--r-- root/root 77045 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/champ/amber99.py
-rw-r--r-- root/root 8985 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/champ/assign.py
-rw-r--r-- root/root 5784 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/champ/formal_charges.py
-rw-r--r-- root/root 4080 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/charge.py
-rw-r--r-- root/root 25494 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/cif.py
-rw-r--r-- root/root 13742 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/cpv.py
-rw-r--r-- root/root 24958 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/dictdb.py
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/chempy/fast/
-rw-r--r-- root/root 5008 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/fast/__init__.py
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/chempy/fragments/
-rw-r--r-- root/root 133 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/fragments/__init__.py
-rw-r--r-- root/root 22373 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/gamess1.py
-rw-r--r-- root/root 3081 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/gms.py
-rw-r--r-- root/root 8020 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/hetatm.py
-rw-r--r-- root/root 1268 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/io.py
-rw-r--r-- root/root 1183 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/lst.py
-rw-r--r-- root/root 12252 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/mae.py
-rw-r--r-- root/root 1898 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/map.py
-rw-r--r-- root/root 1496 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/mass.py
-rw-r--r-- root/root 7564 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/mmd.py
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/chempy/mmtf/
-rw-r--r-- root/root 4503 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/mmtf/__init__.py
-rw-r--r-- root/root 7235 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/mmtf/io.py
-rw-r--r-- root/root 24485 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/models.py
-rw-r--r-- root/root 4792 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/mol.py
-rw-r--r-- root/root 3737 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/mol2.py
-rw-r--r-- root/root 2428 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/neighbor.py
-rw-r--r-- root/root 3708 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/pdb.py
-rw-r--r-- root/root 3652 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/pkl.py
-rw-r--r-- root/root 14803 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/place.py
-rw-r--r-- root/root 19118 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/protein.py
-rw-r--r-- root/root 83108 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/protein_amber.py
-rw-r--r-- root/root 83144 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/protein_amber99.py
-rw-r--r-- root/root 75507 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/protein_mmff.py
-rw-r--r-- root/root 140484 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/protein_residues.py
-rw-r--r-- root/root 5166 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/sdf.py
-rw-r--r-- root/root 2038 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/solvate.py
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/chempy/tinker/
-rw-r--r-- root/root 5242 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/tinker/__init__.py
-rw-r--r-- root/root 33342 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/tinker/amber.py
-rw-r--r-- root/root 1926 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/tinker/keyword.py
-rw-r--r-- root/root 5937 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/tinker/realtime.py
-rw-r--r-- root/root 9315 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/tinker/state.py
-rw-r--r-- root/root 1096 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/water_amber.py
-rw-r--r-- root/root 1450 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/water_residues.py
-rw-r--r-- root/root 3081 2021-05-10 18:38 ./usr/lib/python3/dist-packages/chempy/xyz.py
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/pmg_qt/
-rw-r--r-- root/root 5633 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/TextEditor.py
-rw-r--r-- root/root 49 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/__init__.py
-rw-r--r-- root/root 3356 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/advanced_settings_gui.py
-rw-r--r-- root/root 50007 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/builder.py
-rw-r--r-- root/root 28912 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/file_dialogs.py
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/pmg_qt/forms/
-rw-r--r-- root/root 0 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/forms/__init__.py
-rw-r--r-- root/root 5236 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/forms/askpartial.ui
-rw-r--r-- root/root 2038 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/forms/change_confirm.ui
-rw-r--r-- root/root 5094 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/forms/colors.ui
-rw-r--r-- root/root 1996 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/forms/create_shortcut.ui
-rw-r--r-- root/root 7828 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/forms/fetch.ui
-rw-r--r-- root/root 4966 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/forms/help_shortcut.ui
-rw-r--r-- root/root 2577 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/forms/load_aln.ui
-rw-r--r-- root/root 5538 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/forms/load_mae.ui
-rw-r--r-- root/root 8947 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/forms/load_map.ui
-rw-r--r-- root/root 5572 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/forms/load_mtz.ui
-rw-r--r-- root/root 6465 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/forms/load_traj.ui
-rw-r--r-- root/root 10840 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/forms/movieexport.ui
-rw-r--r-- root/root 3016 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/forms/pluginitem.ui
-rw-r--r-- root/root 15187 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/forms/pluginmanager.ui
-rw-r--r-- root/root 2576 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/forms/png.ui
-rw-r--r-- root/root 2443 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/forms/props.ui
-rw-r--r-- root/root 13740 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/forms/render.ui
-rw-r--r-- root/root 11101 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/forms/save_molecule.ui
-rw-r--r-- root/root 1292 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/forms/save_object.ui
-rw-r--r-- root/root 1546 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/forms/shortcut_menu.ui
-rw-r--r-- root/root 2758 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/keymapping.py
-rw-r--r-- root/root 4709 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/mimic_pmg_tk.py
-rw-r--r-- root/root 4105 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/mimic_tk.py
-rw-r--r-- root/root 16008 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/properties_dialog.py
-rw-r--r-- root/root 7797 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/pymol_gl_widget.py
-rw-r--r-- root/root 42148 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/pymol_qt_gui.py
-rw-r--r-- root/root 16820 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/shortcut_menu_gui.py
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/pmg_qt/syntax/
-rw-r--r-- root/root 478 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/syntax/__init__.py
-rw-r--r-- root/root 3944 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/syntax/pml.py
-rw-r--r-- root/root 3492 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/syntax/pmlparser.py
-rw-r--r-- root/root 3912 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/syntax/python.py
-rw-r--r-- root/root 30362 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_qt/volume.py
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/pmg_tk/
-rw-r--r-- root/root 5081 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_tk/ColorEditor.py
-rw-r--r-- root/root 92 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_tk/Demo.py
-rw-r--r-- root/root 13744 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_tk/PMGApp.py
-rw-r--r-- root/root 14835 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_tk/PyMOLMapLoad.py
-rw-r--r-- root/root 5270 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_tk/SetEditor.py
-rw-r--r-- root/root 4913 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_tk/Setting.py
-rw-r--r-- root/root 4399 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_tk/TextEditor.py
-rw-r--r-- root/root 1347 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_tk/__init__.py
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/pmg_tk/skins/
-rw-r--r-- root/root 283 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_tk/skins/__init__.py
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/pmg_tk/skins/demo/
-rw-r--r-- root/root 2544 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_tk/skins/demo/__init__.py
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/pmg_tk/skins/normal/
-rw-r--r-- root/root 3689 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_tk/skins/normal/ModalWindow.py
-rw-r--r-- root/root 56809 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_tk/skins/normal/__init__.py
-rw-r--r-- root/root 56319 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_tk/skins/normal/builder.py
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/pmg_tk/startup/
-rw-r--r-- root/root 1454 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_tk/startup/__init__.py
-rw-r--r-- root/root 33197 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pmg_tk/volume.py
-rw-r--r-- root/root 433 2021-12-15 15:51 ./usr/lib/python3/dist-packages/pymol-2.5.0.egg-info
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/pymol/
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/pymol/Qt/
-rw-r--r-- root/root 2489 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/Qt/__init__.py
-rw-r--r-- root/root 9282 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/Qt/utils.py
-rw-r--r-- root/root 17561 2021-12-15 15:51 ./usr/lib/python3/dist-packages/pymol/__init__.py
-rw-r--r-- root/root 158 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/__main__.py
-rw-r--r-- root/root 8864996 2021-12-15 15:51 ./usr/lib/python3/dist-packages/pymol/_cmd.cpython-310-arm-linux-gnueabihf.so
-rw-r--r-- root/root 8864996 2021-12-15 15:51 ./usr/lib/python3/dist-packages/pymol/_cmd.cpython-39-arm-linux-gnueabihf.so
-rw-r--r-- root/root 54456 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/_gui.py
-rw-r--r-- root/root 12756 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/api.py
-rw-r--r-- root/root 614 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/callback.py
-rw-r--r-- root/root 18978 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/cgo.py
-rw-r--r-- root/root 733 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/checking.py
-rw-r--r-- root/root 13423 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/cmd.py
-rw-r--r-- root/root 965 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/colorprinting.py
-rw-r--r-- root/root 8317 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/colorramping.py
-rw-r--r-- root/root 18403 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/commanding.py
-rw-r--r-- root/root 13464 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/completing.py
-rw-r--r-- root/root 1054 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/computing.py
-rw-r--r-- root/root 10131 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/constants.py
-rw-r--r-- root/root 2820 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/constants_palette.py
-rw-r--r-- root/root 28529 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/controlling.py
-rw-r--r-- root/root 37177 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/creating.py
-rw-r--r-- root/root 4588 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/diagnosing.py
-rw-r--r-- root/root 78662 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/editing.py
-rw-r--r-- root/root 16090 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/editor.py
-rw-r--r-- root/root 7877 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/experimenting.py
-rw-r--r-- root/root 33542 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/exporting.py
-rw-r--r-- root/root 4307 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/externing.py
-rw-r--r-- root/root 5709 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/feedingback.py
-rw-r--r-- root/root 27067 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/fitting.py
-rw-r--r-- root/root 2446 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/gui.py
-rw-r--r-- root/root 14766 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/headering.py
-rw-r--r-- root/root 26590 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/helping.py
-rw-r--r-- root/root 56592 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/importing.py
-rw-r--r-- root/root 19358 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/internal.py
-rw-r--r-- root/root 21939 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/invocation.py
-rw-r--r-- root/root 2514 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/keyboard.py
-rw-r--r-- root/root 30630 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/keywords.py
-rw-r--r-- root/root 9451 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/lazyio.py
-rw-r--r-- root/root 2759 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/locking.py
-rw-r--r-- root/root 95340 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/menu.py
-rw-r--r-- root/root 315 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/monitoring.py
-rw-r--r-- root/root 1683 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/morphing.py
-rw-r--r-- root/root 31377 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/movie.py
-rw-r--r-- root/root 25123 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/moving.py
-rw-r--r-- root/root 5789 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/mpeg_encode.py
-rw-r--r-- root/root 31158 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/parser.py
-rw-r--r-- root/root 20459 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/parsing.py
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/pymol/plugins/
-rw-r--r-- root/root 12891 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/plugins/__init__.py
-rw-r--r-- root/root 10982 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/plugins/installation.py
-rw-r--r-- root/root 4740 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/plugins/legacysupport.py
-rw-r--r-- root/root 22446 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/plugins/managergui.py
-rw-r--r-- root/root 14939 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/plugins/managergui_qt.py
-rw-r--r-- root/root 10457 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/plugins/repository.py
-rw-r--r-- root/root 1428 2021-12-15 15:51 ./usr/lib/python3/dist-packages/pymol/povray.py
-rw-r--r-- root/root 14479 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/preset.py
-rw-r--r-- root/root 20577 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/pymolhttpd.py
-rw-r--r-- root/root 47684 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/querying.py
-rw-r--r-- root/root 13919 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/rpc.py
-rw-r--r-- root/root 2092 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/save_shortcut.py
-rw-r--r-- root/root 5736 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/selecting.py
-rw-r--r-- root/root 224 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/selector.py
-rw-r--r-- root/root 4986 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/seqalign.py
-rw-r--r-- root/root 17128 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/setting.py
-rw-r--r-- root/root 6461 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/shortcut.py
-rw-r--r-- root/root 6834 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/shortcut_dict.py
-rw-r--r-- root/root 5567 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/shortcut_manager.py
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/pymol/stereochemistry/
-rw-r--r-- root/root 657 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/stereochemistry/__init__.py
lrwxrwxrwx root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/pymol/test -> ../../../../share/pymol/test
-rw-r--r-- root/root 38715 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/util.py
-rw-r--r-- root/root 22861 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/vfont.py
-rw-r--r-- root/root 61294 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/viewing.py
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/pymol/wizard/
-rw-r--r-- root/root 2384 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/__init__.py
-rw-r--r-- root/root 2601 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/annotation.py
-rw-r--r-- root/root 9011 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/appearance.py
-rw-r--r-- root/root 11221 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/benchmark.py
-rw-r--r-- root/root 15756 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/box.py
-rw-r--r-- root/root 11799 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/charge.py
-rw-r--r-- root/root 5412 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/cleanup.py
-rw-r--r-- root/root 5323 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/command.py
-rw-r--r-- root/root 18029 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/demo.py
-rw-r--r-- root/root 9955 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/density.py
-rw-r--r-- root/root 6385 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/distance.py
-rw-r--r-- root/root 3383 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/dragging.py
-rw-r--r-- root/root 13655 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/filter.py
-rw-r--r-- root/root 2866 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/label.py
-rw-r--r-- root/root 18849 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/measurement.py
-rw-r--r-- root/root 930 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/message.py
-rw-r--r-- root/root 29311 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/mutagenesis.py
-rw-r--r-- root/root 14153 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/nucmutagenesis.py
-rw-r--r-- root/root 4002 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/openvr.py
-rw-r--r-- root/root 6316 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/pair_fit.py
-rw-r--r-- root/root 1255 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/pseudoatom.py
-rw-r--r-- root/root 1409 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/renaming.py
-rw-r--r-- root/root 8146 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/sculpting.py
-rw-r--r-- root/root 1913 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/security.py
-rw-r--r-- root/root 15992 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/stereodemo.py
-rw-r--r-- root/root 1147 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizard/toggle.py
-rw-r--r-- root/root 6318 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/wizarding.py
-rw-r--r-- root/root 170284 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/xray.py
-rw-r--r-- root/root 589 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol/xwin.py
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/lib/python3/dist-packages/pymol2/
-rw-r--r-- root/root 3986 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol2/__init__.py
-rw-r--r-- root/root 3811 2021-05-10 18:38 ./usr/lib/python3/dist-packages/pymol2/cmd2.py
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/share/
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/share/doc/python3-pymol/
-rw-r--r-- root/root 224 2021-12-15 15:51 ./usr/share/doc/python3-pymol/changelog.Debian.armhf.gz
-rw-r--r-- root/root 10942 2021-12-15 15:51 ./usr/share/doc/python3-pymol/changelog.Debian.gz
-rw-r--r-- root/root 50821 2021-05-10 18:38 ./usr/share/doc/python3-pymol/changelog.gz
-rw-r--r-- root/root 17575 2021-12-15 15:51 ./usr/share/doc/python3-pymol/copyright
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/share/lintian/
drwxr-xr-x root/root 0 2021-12-15 15:51 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 472 2021-12-15 15:51 ./usr/share/lintian/overrides/python3-pymol
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 538380
Build-Time: 624
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1150
Job: pymol_2.5.0+dfsg-1
Machine Architecture: armhf
Package: pymol
Package-Time: 1796
Source-Version: 2.5.0+dfsg-1
Space: 538380
Status: successful
Version: 2.5.0+dfsg-1+b1
--------------------------------------------------------------------------------
Finished at 2022-04-20T16:29:33Z
Build needed 00:29:56, 538380k disk space