pymol →
2.4.0+dfsg-2 →
armhf → 2021-05-27 05:40:04
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| pymol 2.4.0+dfsg-2 (armhf) Thu, 27 May 2021 05:08:10 +0000 |
+==============================================================================+
Package: pymol
Version: 2.4.0+dfsg-2
Source Version: 2.4.0+dfsg-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-e488b268-1bc4-4da4-9c72-b4b713eec3ee' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/pymol-Es5eYP/resolver-SgeAcz' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [12.2 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.2 MB]
Fetched 25.5 MB in 13s (1934 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'pymol' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/debichem-team/pymol.git
Please use:
git clone https://salsa.debian.org/debichem-team/pymol.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 7004 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main pymol 2.4.0+dfsg-2 (dsc) [2270 B]
Get:2 http://172.17.0.1/private bullseye-staging/main pymol 2.4.0+dfsg-2 (tar) [6945 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main pymol 2.4.0+dfsg-2 (diff) [56.7 kB]
Fetched 7004 kB in 2s (3025 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pymol-Es5eYP/pymol-2.4.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pymol-Es5eYP' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-python, freeglut3-dev, libfreetype6-dev, libglew1.5-dev, libglm-dev, libnetcdf-dev, libpng-dev, python3-all, python3-all-dev, python3-numpy, python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, texlive-latex-base, libxml2-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 12), dh-python, freeglut3-dev, libfreetype6-dev, libglew1.5-dev, libglm-dev, libnetcdf-dev, libpng-dev, python3-all, python3-all-dev, python3-numpy, python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, texlive-latex-base, libxml2-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [465 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [550 B]
Fetched 1972 B in 0s (53.0 kB/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core fonts-lmodern freeglut3 freeglut3-dev
gettext gettext-base groff-base hdf5-helpers icu-devtools intltool-debian
libaec-dev libaec0 libarchive-zip-perl libavahi-client3 libavahi-common-data
libavahi-common3 libblas3 libbrotli-dev libbrotli1 libbsd0 libcairo2
libcups2 libcurl3-gnutls libcurl4-gnutls-dev libdbus-1-3 libdebhelper-perl
libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-nouveau2
libdrm-radeon1 libdrm2 libedit2 libegl-dev libegl-mesa0 libegl1 libelf1
libevdev2 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libfontconfig1 libfreetype-dev libfreetype6 libfreetype6-dev libgbm1
libgfortran5 libgl-dev libgl1 libgl1-mesa-dev libgl1-mesa-dri libglapi-mesa
libgles-dev libgles1 libgles2 libglew-dev libglew2.1 libglib2.0-0 libglm-dev
libglu1-mesa libglu1-mesa-dev libglvnd-dev libglvnd0 libglx-dev libglx-mesa0
libglx0 libgraphite2-3 libgudev-1.0-0 libharfbuzz0b libhdf5-103-1
libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100
libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libice-dev libice6 libicu-dev
libicu67 libinput-bin libinput10 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjs-jquery libjs-sphinxdoc libjs-underscore
libkpathsea6 liblapack3 libllvm11 libmagic-mgc libmagic1 libmd0 libmd4c0
libmpdec3 libmtdev1 libnetcdf-dev libnetcdf18 libnghttp2-14 libopengl-dev
libopengl0 libpaper-utils libpaper1 libpcre2-16-0 libpipeline1 libpixman-1-0
libpng-dev libpng16-16 libpsl5 libptexenc1 libpthread-stubs0-dev
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.9
libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libqt5core5a
libqt5dbus5 libqt5designer5 libqt5gui5 libqt5help5 libqt5network5
libqt5opengl5 libqt5printsupport5 libqt5sql5 libqt5test5 libqt5widgets5
libqt5xml5 librtmp1 libsensors-config libsensors5 libsigsegv2 libsm-dev
libsm6 libssh2-1 libsub-override-perl libsynctex2 libsz2 libteckit0
libtexlua53 libtexluajit2 libtool libuchardet0 libvulkan1 libwacom-common
libwacom2 libwayland-client0 libwayland-server0 libx11-6 libx11-data
libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0
libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1
libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0
libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0
libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxdamage1
libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxi6
libxkbcommon-x11-0 libxkbcommon0 libxml2 libxml2-dev libxmu6 libxpm4
libxrender1 libxshmfence1 libxt-dev libxt6 libxxf86vm1 libz3-4 libzzip-0-13
m4 man-db media-types po-debconf python3 python3-all python3-all-dev
python3-dev python3-distutils python3-lib2to3 python3-minimal python3-numpy
python3-opengl python3-pkg-resources python3-pyqt5 python3-pyqt5.qtopengl
python3-pyqt5.sip python3.9 python3.9-dev python3.9-minimal sensible-utils
shared-mime-info t1utils tex-common texlive-base texlive-binaries
texlive-latex-base ucf x11-common x11proto-dev x11proto-xext-dev xdg-utils
xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff cups-common libcurl4-doc
libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev
libssh2-1-dev pkg-config freetype2-doc glew-utils libhdf5-doc libice-doc
icu-doc netcdf-bin netcdf-doc libthai0 qt5-image-formats-plugins qtwayland5
lm-sensors libsm-doc libtool-doc gfortran | fortran95-compiler gcj-jdk
libx11-doc libxcb-doc libxext-doc libxt-doc m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv gfortran
python-numpy-doc python3-numpy-dbg python3-pytest libgle3 python3-setuptools
python3-pyqt5-dbg python3.9-venv python3.9-doc binfmt-support ghostscript gv
| postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-latex-base-doc
Recommended packages:
curl | wget | lynx ca-certificates dbus libarchive-cpio-perl libglib2.0-data
xdg-user-dirs javascript-common pkg-config libpng-tools publicsuffix
qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme libqt5sql5-sqlite
| libqt5sql5-mysql | libqt5sql5-odbc | libqt5sql5-psql | libqt5sql5-tds
| libqt5sql5-ibase libltdl-dev mesa-vulkan-drivers | vulkan-icd libwacom-bin
libmail-sendmail-perl lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core fonts-lmodern freeglut3 freeglut3-dev
gettext gettext-base groff-base hdf5-helpers icu-devtools intltool-debian
libaec-dev libaec0 libarchive-zip-perl libavahi-client3 libavahi-common-data
libavahi-common3 libblas3 libbrotli-dev libbrotli1 libbsd0 libcairo2
libcups2 libcurl3-gnutls libcurl4-gnutls-dev libdbus-1-3 libdebhelper-perl
libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-nouveau2
libdrm-radeon1 libdrm2 libedit2 libegl-dev libegl-mesa0 libegl1 libelf1
libevdev2 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libfontconfig1 libfreetype-dev libfreetype6 libfreetype6-dev libgbm1
libgfortran5 libgl-dev libgl1 libgl1-mesa-dev libgl1-mesa-dri libglapi-mesa
libgles-dev libgles1 libgles2 libglew-dev libglew2.1 libglib2.0-0 libglm-dev
libglu1-mesa libglu1-mesa-dev libglvnd-dev libglvnd0 libglx-dev libglx-mesa0
libglx0 libgraphite2-3 libgudev-1.0-0 libharfbuzz0b libhdf5-103-1
libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100
libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libice-dev libice6 libicu-dev
libicu67 libinput-bin libinput10 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjs-jquery libjs-sphinxdoc libjs-underscore
libkpathsea6 liblapack3 libllvm11 libmagic-mgc libmagic1 libmd0 libmd4c0
libmpdec3 libmtdev1 libnetcdf-dev libnetcdf18 libnghttp2-14 libopengl-dev
libopengl0 libpaper-utils libpaper1 libpcre2-16-0 libpipeline1 libpixman-1-0
libpng-dev libpng16-16 libpsl5 libptexenc1 libpthread-stubs0-dev
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.9
libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libqt5core5a
libqt5dbus5 libqt5designer5 libqt5gui5 libqt5help5 libqt5network5
libqt5opengl5 libqt5printsupport5 libqt5sql5 libqt5test5 libqt5widgets5
libqt5xml5 librtmp1 libsensors-config libsensors5 libsigsegv2 libsm-dev
libsm6 libssh2-1 libsub-override-perl libsynctex2 libsz2 libteckit0
libtexlua53 libtexluajit2 libtool libuchardet0 libvulkan1 libwacom-common
libwacom2 libwayland-client0 libwayland-server0 libx11-6 libx11-data
libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0
libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1
libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0
libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0
libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxdamage1
libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxi6
libxkbcommon-x11-0 libxkbcommon0 libxml2 libxml2-dev libxmu6 libxpm4
libxrender1 libxshmfence1 libxt-dev libxt6 libxxf86vm1 libz3-4 libzzip-0-13
m4 man-db media-types po-debconf python3 python3-all python3-all-dev
python3-dev python3-distutils python3-lib2to3 python3-minimal python3-numpy
python3-opengl python3-pkg-resources python3-pyqt5 python3-pyqt5.qtopengl
python3-pyqt5.sip python3.9 python3.9-dev python3.9-minimal
sbuild-build-depends-main-dummy sensible-utils shared-mime-info t1utils
tex-common texlive-base texlive-binaries texlive-latex-base ucf x11-common
x11proto-dev x11proto-xext-dev xdg-utils xkb-data xorg-sgml-doctools
xtrans-dev zlib1g-dev
0 upgraded, 248 newly installed, 0 to remove and 4 not upgraded.
Need to get 144 MB of archives.
After this operation, 553 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [972 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf bsdextrautils armhf 2.36.1-7 [137 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-6 [793 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-minimal armhf 3.9.2-1+rpi1 [791 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-2 [73.4 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf python3.9-minimal armhf 3.9.2-1+rpi1 [1625 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf media-types all 4.0.0 [30.3 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libmpdec3 armhf 2.5.1-1+rpi1 [73.4 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-stdlib armhf 3.9.2-1+rpi1 [1616 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf python3.9 armhf 3.9.2-1+rpi1 [466 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.9.2-3 [37.9 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.14 [14.8 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf tex-common all 6.16 [53.7 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-14 [313 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.3-2 [814 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.3.4 [189 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.11.0-1 [15.3 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.183-1 [161 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13+20210201-1 [164 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-6 [8289 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.6 [580 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
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Get:45 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.9.2-1 [77.8 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.9.2-1 [143 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20201102+nmu1 [99.4 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
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Get:50 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [353 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf fonts-lmodern all 2.004.5-6.1 [4540 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libglvnd0 armhf 1.3.2-1 [55.2 kB]
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Get:74 http://172.17.0.1/private bullseye-staging/main armhf libxcb-xfixes0 armhf 1.14-3 [105 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libxdamage1 armhf 1:1.1.5-2 [15.2 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1.1 [47.8 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libxfixes3 armhf 1:5.0.3-2 [20.7 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libxshmfence1 armhf 1.3-1 [8636 B]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.1 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libdrm-amdgpu1 armhf 2.4.104-1+rpi1 [27.4 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libdrm-nouveau2 armhf 2.4.104-1+rpi1 [25.0 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libdrm-radeon1 armhf 2.4.104-1+rpi1 [29.2 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libedit2 armhf 3.1-20191231-2 [80.2 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libz3-4 armhf 4.8.10-1 [5689 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libllvm11 armhf 1:11.0.1-2+rpi1 [15.6 MB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libsensors-config all 1:3.6.0-7 [32.3 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libsensors5 armhf 1:3.6.0-7 [49.6 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libvulkan1 armhf 1.2.162.0-1 [82.5 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libgl1-mesa-dri armhf 20.3.4-1+rpi1 [5883 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libglx-mesa0 armhf 20.3.4-1+rpi1 [171 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libglx0 armhf 1.3.2-1 [25.8 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libgl1 armhf 1.3.2-1 [106 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libxi6 armhf 2:1.7.10-1 [77.9 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf freeglut3 armhf 2.8.1-6 [112 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf x11proto-dev all 2020.1-1 [594 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libxau-dev armhf 1:1.0.9-1 [22.3 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf xtrans-dev all 1.4.0-1 [98.7 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libxcb1-dev armhf 1.14-3 [171 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libx11-dev armhf 2:1.7.1-1 [775 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libglx-dev armhf 1.3.2-1 [16.3 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libgl-dev armhf 1.3.2-1 [100 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libwayland-server0 armhf 1.18.0-2~exp1.1 [28.0 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libgbm1 armhf 20.3.4-1+rpi1 [70.2 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libwayland-client0 armhf 1.18.0-2~exp1.1 [22.1 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libegl-mesa0 armhf 20.3.4-1+rpi1 [123 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libegl1 armhf 1.3.2-1 [28.8 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libegl-dev armhf 1.3.2-1 [19.6 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libgles1 armhf 1.3.2-1 [13.2 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libgles2 armhf 1.3.2-1 [20.2 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libgles-dev armhf 1.3.2-1 [50.3 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libopengl0 armhf 1.3.2-1 [38.8 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libopengl-dev armhf 1.3.2-1 [5876 B]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libglvnd-dev armhf 1.3.2-1 [13.9 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libgl1-mesa-dev armhf 20.3.4-1+rpi1 [51.2 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libglu1-mesa armhf 9.0.1-1 [127 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libglu1-mesa-dev armhf 9.0.1-1 [166 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf x11proto-xext-dev all 2020.1-1 [3404 B]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf libxext-dev armhf 2:1.3.3-1.1 [102 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+22 [252 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libxt6 armhf 1:1.2.0-1 [159 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf libice-dev armhf 2:1.0.10-1 [58.7 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libsm-dev armhf 2:1.2.3-1 [35.4 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libxt-dev armhf 1:1.2.0-1 [372 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf freeglut3-dev armhf 2.8.1-6 [165 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf hdf5-helpers armhf 1.10.6+repack-2 [40.0 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 67.1-6 [172 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf libaec0 armhf 1.0.4-1 [20.0 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf libsz2 armhf 1.0.4-1 [6664 B]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf libaec-dev armhf 1.0.4-1 [17.8 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf libavahi-common-data armhf 0.8-5 [123 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf libavahi-common3 armhf 0.8-5 [55.3 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf libdbus-1-3 armhf 1.12.20-2 [193 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf libavahi-client3 armhf 0.8-5 [57.9 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf libbrotli-dev armhf 1.0.9-2+b1 [272 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.14-3 [110 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-5 [602 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf libcups2 armhf 2.3.3op2-3 [311 kB]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.9.0-2 [141 kB]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.74.0-1.2 [302 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf libcurl4-gnutls-dev armhf 7.74.0-1.2 [375 kB]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf libdouble-conversion3 armhf 3.1.5-6.1 [38.6 kB]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf libevdev2 armhf 1.11.0+dfsg-1+rpi1 [27.8 kB]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.10-2 [121 kB]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:156 http://172.17.0.1/private bullseye-staging/main armhf libpng-dev armhf 1.6.37-3 [277 kB]
Get:157 http://172.17.0.1/private bullseye-staging/main armhf libfreetype-dev armhf 2.10.4+dfsg-1 [503 kB]
Get:158 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6-dev armhf 2.10.4+dfsg-1 [82.4 kB]
Get:159 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.2.1-6+rpi1 [232 kB]
Get:160 http://172.17.0.1/private bullseye-staging/main armhf libglew2.1 armhf 2.1.0-4 [160 kB]
Get:161 http://172.17.0.1/private bullseye-staging/main armhf libglew-dev armhf 2.1.0-4 [141 kB]
Get:162 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.8-1 [1183 kB]
Get:163 http://172.17.0.1/private bullseye-staging/main armhf libglm-dev all 0.9.9.8+ds-1 [183 kB]
Get:164 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:165 http://172.17.0.1/private bullseye-staging/main armhf libgudev-1.0-0 armhf 234-1 [12.7 kB]
Get:166 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:167 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-103-1 armhf 1.10.6+repack-2 [1184 kB]
Get:168 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.6+repack-2 [128 kB]
Get:169 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-fortran-102 armhf 1.10.6+repack-2 [93.0 kB]
Get:170 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-100 armhf 1.10.6+repack-2 [78.1 kB]
Get:171 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.6+repack-2 [49.8 kB]
Get:172 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.6+repack-2 [36.9 kB]
Get:173 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [122 kB]
Get:174 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:2.0.6-4 [240 kB]
Get:175 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev armhf 1:2.0.6-4 [67.8 kB]
Get:176 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-dev armhf 1.10.6+repack-2 [2167 kB]
Get:177 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 67.1-6 [9229 kB]
Get:178 http://172.17.0.1/private bullseye-staging/main armhf libwacom-common all 1.8-2 [49.7 kB]
Get:179 http://172.17.0.1/private bullseye-staging/main armhf libwacom2 armhf 1.8-2 [19.0 kB]
Get:180 http://172.17.0.1/private bullseye-staging/main armhf libinput-bin armhf 1.16.4-3 [21.9 kB]
Get:181 http://172.17.0.1/private bullseye-staging/main armhf libmtdev1 armhf 1.1.6-1 [22.0 kB]
Get:182 http://172.17.0.1/private bullseye-staging/main armhf libinput10 armhf 1.16.4-3 [100 kB]
Get:183 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB]
Get:184 http://172.17.0.1/private bullseye-staging/main armhf libjs-underscore all 1.9.1~dfsg-3 [100 kB]
Get:185 http://172.17.0.1/private bullseye-staging/main armhf libjs-sphinxdoc all 3.4.3-2 [127 kB]
Get:186 http://172.17.0.1/private bullseye-staging/main armhf libkpathsea6 armhf 2020.20200327.54578-7 [163 kB]
Get:187 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:188 http://172.17.0.1/private bullseye-staging/main armhf libmd4c0 armhf 0.4.7-2 [39.0 kB]
Get:189 http://172.17.0.1/private bullseye-staging/main armhf libnetcdf18 armhf 1:4.7.4-1 [348 kB]
Get:190 http://172.17.0.1/private bullseye-staging/main armhf libnetcdf-dev armhf 1:4.7.4-1 [93.6 kB]
Get:191 http://172.17.0.1/private bullseye-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:192 http://172.17.0.1/private bullseye-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:193 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-16-0 armhf 10.36-2 [197 kB]
Get:194 http://172.17.0.1/private bullseye-staging/main armhf libptexenc1 armhf 2020.20200327.54578-7 [61.2 kB]
Get:195 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9 armhf 3.9.2-1+rpi1 [1413 kB]
Get:196 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-dev armhf 3.9.2-1+rpi1 [3055 kB]
Get:197 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.9.2-3 [21.7 kB]
Get:198 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.9.2-3 [1068 B]
Get:199 http://172.17.0.1/private bullseye-staging/main armhf shared-mime-info armhf 2.0-1 [697 kB]
Get:200 http://172.17.0.1/private bullseye-staging/main armhf libqt5core5a armhf 5.15.2+dfsg-5+rpi1 [1516 kB]
Get:201 http://172.17.0.1/private bullseye-staging/main armhf libqt5dbus5 armhf 5.15.2+dfsg-5+rpi1 [212 kB]
Get:202 http://172.17.0.1/private bullseye-staging/main armhf libqt5network5 armhf 5.15.2+dfsg-5+rpi1 [595 kB]
Get:203 http://172.17.0.1/private bullseye-staging/main armhf libxcb-icccm4 armhf 0.4.1-1.1 [26.3 kB]
Get:204 http://172.17.0.1/private bullseye-staging/main armhf libxcb-util1 armhf 0.4.0-1 [22.1 kB]
Get:205 http://172.17.0.1/private bullseye-staging/main armhf libxcb-image0 armhf 0.4.0-1+b3 [23.4 kB]
Get:206 http://172.17.0.1/private bullseye-staging/main armhf libxcb-keysyms1 armhf 0.4.0-1+b2 [15.9 kB]
Get:207 http://172.17.0.1/private bullseye-staging/main armhf libxcb-randr0 armhf 1.14-3 [112 kB]
Get:208 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render-util0 armhf 0.3.9-1+b1 [17.3 kB]
Get:209 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shape0 armhf 1.14-3 [102 kB]
Get:210 http://172.17.0.1/private bullseye-staging/main armhf libxcb-xinerama0 armhf 1.14-3 [101 kB]
Get:211 http://172.17.0.1/private bullseye-staging/main armhf libxcb-xinput0 armhf 1.14-3 [123 kB]
Get:212 http://172.17.0.1/private bullseye-staging/main armhf libxcb-xkb1 armhf 1.14-3 [122 kB]
Get:213 http://172.17.0.1/private bullseye-staging/main armhf xkb-data all 2.29-2 [655 kB]
Get:214 http://172.17.0.1/private bullseye-staging/main armhf libxkbcommon0 armhf 1.0.3-2 [88.5 kB]
Get:215 http://172.17.0.1/private bullseye-staging/main armhf libxkbcommon-x11-0 armhf 1.0.3-2 [15.1 kB]
Get:216 http://172.17.0.1/private bullseye-staging/main armhf libqt5gui5 armhf 5.15.2+dfsg-5+rpi1 [2544 kB]
Get:217 http://172.17.0.1/private bullseye-staging/main armhf libqt5widgets5 armhf 5.15.2+dfsg-5+rpi1 [2060 kB]
Get:218 http://172.17.0.1/private bullseye-staging/main armhf libqt5xml5 armhf 5.15.2+dfsg-5+rpi1 [135 kB]
Get:219 http://172.17.0.1/private bullseye-staging/main armhf libqt5designer5 armhf 5.15.2-5 [2617 kB]
Get:220 http://172.17.0.1/private bullseye-staging/main armhf libqt5sql5 armhf 5.15.2+dfsg-5+rpi1 [135 kB]
Get:221 http://172.17.0.1/private bullseye-staging/main armhf libqt5help5 armhf 5.15.2-5 [132 kB]
Get:222 http://172.17.0.1/private bullseye-staging/main armhf libqt5opengl5 armhf 5.15.2+dfsg-5+rpi1 [154 kB]
Get:223 http://172.17.0.1/private bullseye-staging/main armhf libqt5printsupport5 armhf 5.15.2+dfsg-5+rpi1 [211 kB]
Get:224 http://172.17.0.1/private bullseye-staging/main armhf libqt5test5 armhf 5.15.2+dfsg-5+rpi1 [157 kB]
Get:225 http://172.17.0.1/private bullseye-staging/main armhf libsynctex2 armhf 2020.20200327.54578-7 [70.2 kB]
Get:226 http://172.17.0.1/private bullseye-staging/main armhf libteckit0 armhf 2.5.10+ds1-3 [252 kB]
Get:227 http://172.17.0.1/private bullseye-staging/main armhf libtexlua53 armhf 2020.20200327.54578-7 [102 kB]
Get:228 http://172.17.0.1/private bullseye-staging/main armhf libtexluajit2 armhf 2020.20200327.54578-7 [208 kB]
Get:229 http://172.17.0.1/private bullseye-staging/main armhf libxmu6 armhf 2:1.1.2-2+b3 [52.1 kB]
Get:230 http://172.17.0.1/private bullseye-staging/main armhf libxpm4 armhf 1:3.5.12-1 [43.6 kB]
Get:231 http://172.17.0.1/private bullseye-staging/main armhf libxaw7 armhf 2:1.0.13-1.1 [166 kB]
Get:232 http://172.17.0.1/private bullseye-staging/main armhf libxml2-dev armhf 2.9.10+dfsg-6.6 [646 kB]
Get:233 http://172.17.0.1/private bullseye-staging/main armhf libzzip-0-13 armhf 0.13.62-3.3 [51.9 kB]
Get:234 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.9.2-3 [1056 B]
Get:235 http://172.17.0.1/private bullseye-staging/main armhf python3.9-dev armhf 3.9.2-1+rpi1 [501 kB]
Get:236 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.9.2-3 [24.8 kB]
Get:237 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.9.2-3 [1064 B]
Get:238 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 52.0.0-3 [189 kB]
Get:239 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.19.5-1 [2930 kB]
Get:240 http://172.17.0.1/private bullseye-staging/main armhf python3-opengl all 3.1.5+dfsg-1 [610 kB]
Get:241 http://172.17.0.1/private bullseye-staging/main armhf python3-pyqt5.sip armhf 12.8.1-1+b1 [44.2 kB]
Get:242 http://172.17.0.1/private bullseye-staging/main armhf python3-pyqt5 armhf 5.15.2+dfsg-3 [1954 kB]
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Get:245 http://172.17.0.1/private bullseye-staging/main armhf texlive-binaries armhf 2020.20200327.54578-7 [6900 kB]
Get:246 http://172.17.0.1/private bullseye-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:247 http://172.17.0.1/private bullseye-staging/main armhf texlive-base all 2020.20210202-3 [20.8 MB]
Get:248 http://172.17.0.1/private bullseye-staging/main armhf texlive-latex-base all 2020.20210202-3 [1120 kB]
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invoke-rc.d: could not determine current runlevel
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Creating config file /etc/papersize with new version
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Not building database; man-db/auto-update is not 'true'.
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Regenerating fonts cache... done.
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libnetcdf-dev (1:4.7.4-1) ...
Setting up python3-numpy (1:1.19.5-1) ...
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update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up libglx-dev:armhf (1.3.2-1) ...
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tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
Setting up libgl-dev:armhf (1.3.2-1) ...
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Setting up python3-opengl (3.1.5+dfsg-1) ...
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Setting up libgles-dev:armhf (1.3.2-1) ...
Setting up python3-pyqt5 (5.15.2+dfsg-3) ...
Setting up python3-pyqt5.qtopengl (5.15.2+dfsg-3) ...
Setting up libglvnd-dev:armhf (1.3.2-1) ...
Setting up libglew-dev:armhf (2.1.0-4) ...
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Setting up freeglut3-dev:armhf (2.8.1-6) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-11+rpi1) ...
Processing triggers for tex-common (6.16) ...
Running updmap-sys. This may take some time... done.
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Building format(s) --all.
This may take some time... done.
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.35.2-2+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.2.1-6+rpi1 gcc-10_10.2.1-6+rpi1 libc6-dev_2.31-11+rpi1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 linux-libc-dev_5.10.28-1+rpi1
Package versions: adduser_3.118 apt_2.2.3 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11+rpi1 base-passwd_3.5.49 bash_5.1-2 binutils_2.35.2-2+rpi1 binutils-arm-linux-gnueabihf_2.35.2-2+rpi1 binutils-common_2.35.2-2+rpi1 bsdextrautils_2.36.1-7 bsdutils_1:2.36.1-7 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.2.1-6+rpi1 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.75 debhelper_13.3.4 debianutils_4.11.2 dh-autoreconf_20 dh-python_4.20201102+nmu1 dh-strip-nondeterminism_1.11.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.13+20210201-1 e2fsprogs_1.46.2-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 fonts-lmodern_2.004.5-6.1 freeglut3_2.8.1-6 freeglut3-dev_2.8.1-6 g++_4:10.2.1-1+rpi1 g++-10_10.2.1-6+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.2.1-6+rpi1 gcc-10-base_10.2.1-6+rpi1 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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: pymol
Binary: pymol, python3-pymol, pymol-data
Architecture: any all
Version: 2.4.0+dfsg-2
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Uploaders: Michael Banck <mbanck@debian.org>
Homepage: http://www.pymol.org
Standards-Version: 4.4.0
Vcs-Browser: https://salsa.debian.org/debichem-team/pymol
Vcs-Git: https://salsa.debian.org/debichem-team/pymol.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 12), dh-python, freeglut3-dev, libfreetype6-dev, libglew1.5-dev, libglm-dev, libnetcdf-dev, libpng-dev, python3-all, python3-all-dev, python3-numpy, python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, texlive-latex-base, libxml2-dev
Package-List:
pymol deb science optional arch=all
pymol-data deb science optional arch=all
python3-pymol deb python optional arch=any
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f9054bf38b4f9b16ff4b4f5fbaa9dc1b6c3491dd 56680 pymol_2.4.0+dfsg-2.debian.tar.xz
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Files:
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eab05e19b4018817bdb7ded3264bc049 56680 pymol_2.4.0+dfsg-2.debian.tar.xz
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.DXprHqi0/trustedkeys.kbx': General error
gpgv: Signature made Sat May 22 11:26:38 2021 UTC
gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./pymol_2.4.0+dfsg-2.dsc
dpkg-source: info: extracting pymol in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking pymol_2.4.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking pymol_2.4.0+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 02_test-suite.patch
dpkg-source: info: applying 03_povray.patch
dpkg-source: info: applying 22_fix_pymol_import.patch
dpkg-source: info: applying 27_fix_pymol_path_in_setup.patch
dpkg-source: info: applying 28_no_data_install_in_python_path.patch
dpkg-source: info: applying 31_fix_format-security.patch
dpkg-source: info: applying 32_fix_spelling_lintian_warnings.patch
dpkg-source: info: applying 33_fix_relative_paths_in_example_scripts.patch
dpkg-source: info: applying 34_fix_examples_add_fetch_instead_of_load.patch
dpkg-source: info: applying 40_mstop_movies.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=3022a9708189491d95cf94702fa03404
JOURNAL_STREAM=8:14335
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-e488b268-1bc4-4da4-9c72-b4b713eec3ee
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c4828
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package pymol
dpkg-buildpackage: info: source version 2.4.0+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python3 --buildsystem pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f -r build test/tmp test/cmp generated
dh_clean debian/pymol.launch debian/pymol-ref-card.* \
Rules.make create_shadertext.pyc
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules build-arch
dh build-arch --with python3 --buildsystem pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/arc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/bond_amber.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/bond_mmff.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/bonds.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/brick.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/cc1.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/charge.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/cif.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/cpv.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/dictdb.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/gamess1.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/gms.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/hetatm.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/io.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/lst.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/mae.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/map.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/mass.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/mmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/models.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/mol.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/mol2.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/neighbor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/pdb.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/pkl.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/place.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/protein.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/protein_amber.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/protein_amber99.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/protein_mmff.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/protein_residues.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/sdf.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/solvate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/water_amber.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/water_residues.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/xyz.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
copying modules/chempy/bmin/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
copying modules/chempy/bmin/commands.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
copying modules/chempy/bmin/realtime.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
copying modules/chempy/bmin/state.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
copying modules/chempy/bmin/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/champ
copying modules/chempy/champ/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/champ
copying modules/chempy/champ/amber99.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/champ
copying modules/chempy/champ/assign.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/champ
copying modules/chempy/champ/formal_charges.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/champ
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/fast
copying modules/chempy/fast/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/fast
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/fragments
copying modules/chempy/fragments/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/fragments
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf
copying modules/chempy/mmtf/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf
copying modules/chempy/mmtf/io.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
copying modules/chempy/tinker/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
copying modules/chempy/tinker/amber.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
copying modules/chempy/tinker/keyword.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
copying modules/chempy/tinker/realtime.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
copying modules/chempy/tinker/state.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/TextEditor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/advanced_settings_gui.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/builder.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/file_dialogs.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/keymapping.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/mimic_pmg_tk.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/mimic_tk.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/properties_dialog.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/pymol_gl_widget.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/pymol_qt_gui.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/volume.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax
copying modules/pmg_qt/syntax/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax
copying modules/pmg_qt/syntax/pml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax
copying modules/pmg_qt/syntax/pmlparser.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax
copying modules/pmg_qt/syntax/python.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/ColorEditor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/Demo.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/PMGApp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/PyMOLMapLoad.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/SetEditor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/Setting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/TextEditor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/volume.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins
copying modules/pmg_tk/skins/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/demo
copying modules/pmg_tk/skins/demo/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/demo
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/ModalWindow.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/builder.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup
copying modules/pmg_tk/startup/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup
copying modules/pmg_tk/startup/apbs_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/_gui.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/api.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/callback.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/cgo.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/checking.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/colorprinting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/colorramping.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/commanding.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/completing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/computing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/constants.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/constants_palette.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/controlling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/creating.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/diagnosing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/editing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/editor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/experimenting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/exporting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/externing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/feedingback.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/fitting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/gui.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/headering.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/helping.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/importing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/internal.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/invocation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/keyboard.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/keywords.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/lazyio.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/locking.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/menu.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/monitoring.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/morphing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/movie.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/moving.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/parser.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/parsing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/preset.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/pymolhttpd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/querying.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/rpc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/selecting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/selector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/seqalign.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/setting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/shortcut.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/vfont.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/viewing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/wizarding.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/xray.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/xwin.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/povray.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/Qt
copying modules/pymol/Qt/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/Qt
copying modules/pymol/Qt/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/Qt
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/contrib
copying modules/pymol/contrib/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/contrib
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/opengl
copying modules/pymol/opengl/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/opengl
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/gl
copying modules/pymol/opengl/gl/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/gl
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/glu
copying modules/pymol/opengl/glu/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/glu
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/glut
copying modules/pymol/opengl/glut/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/glut
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/installation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/legacysupport.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/managergui.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/managergui_qt.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/repository.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/stereochemistry
copying modules/pymol/stereochemistry/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/stereochemistry
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/annotation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/appearance.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/benchmark.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/box.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/charge.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/cleanup.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/command.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/demo.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/density.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/distance.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/dragging.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/fedora.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/filter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/label.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/measurement.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/message.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/mutagenesis.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/nucmutagenesis.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/openvr.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/pair_fit.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/pseudoatom.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/renaming.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/sculpting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/security.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/stereodemo.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/toggle.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol2
copying modules/pymol2/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol2
copying modules/pymol2/cmd2.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol2
copying modules/pmg_qt/forms/askpartial.ui -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/colors.ui -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/fetch.ui -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_aln.ui -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_mae.ui -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_map.ui -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_mtz.ui -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_traj.ui -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/movieexport.ui -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/pluginitem.ui -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/pluginmanager.ui -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/png.ui -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/props.ui -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/render.ui -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/save_molecule.ui -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/save_object.ui -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
running build_ext
building 'pymol._cmd' extension
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/build
creating build/temp.linux-armhf-3.9/build/generated
creating build/temp.linux-armhf-3.9/contrib
creating build/temp.linux-armhf-3.9/contrib/uiuc
creating build/temp.linux-armhf-3.9/contrib/uiuc/plugins
creating build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin
creating build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src
creating build/temp.linux-armhf-3.9/layer0
creating build/temp.linux-armhf-3.9/layer1
creating build/temp.linux-armhf-3.9/layer2
creating build/temp.linux-armhf-3.9/layer3
creating build/temp.linux-armhf-3.9/layer4
creating build/temp.linux-armhf-3.9/layer5
creating build/temp.linux-armhf-3.9/modules
creating build/temp.linux-armhf-3.9/modules/cealign
creating build/temp.linux-armhf-3.9/modules/cealign/src
creating build/temp.linux-armhf-3.9/ov
creating build/temp.linux-armhf-3.9/ov/src
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD build/generated/ShaderText.cpp -o build/temp.linux-armhf-3.9/build/generated/ShaderText.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerInitAll’:
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:271:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
271 | if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:273:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
273 | if(ok) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerFreeAll’:
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:411:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
411 | if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:413:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
413 | return ok;
| ^~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:32:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_readline’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:279:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
279 | for (i = 0; i < strlen(line); ++i) {
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_fread’:
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_fread’:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=]
435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
| ~~^ ~~
| | |
| long int fio_size_t {aka long long int}
| %lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=]
435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
| ~~^ ~~~~
| | |
| long int fio_size_t {aka long long int}
| %lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_fwrite’:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=]
435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
| ~~^ ~~
| | |
| long int fio_size_t {aka long long int}
| %lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~~~~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=]
435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
| ~~^ ~~~~
| | |
| long int fio_size_t {aka long long int}
| %lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_fwrite’:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~~~~~
| |
| fio_size_t {aka long long int}
In file included from contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:70:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdheader’:
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:191:57: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
191 | } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:204:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
204 | if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:222:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
222 | if (input_integer[0] != dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:399:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
399 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:416:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
416 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdstep’:
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:621:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
621 | if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT;
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:625:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
625 | if ((tmpbuf[2*i]+tmpbuf[2*i+1]) != sizeof(float)*N) return DCD_BADFORMAT;
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable ‘readlen’ set but not used [-Wunused-but-set-variable]
546 | fio_size_t readlen; /* number of bytes actually read */
| ^~~~~~~
In file included from /usr/include/string.h:495,
from contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:23,
from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:31:
In function ‘strncpy’,
inlined from ‘get_pdb_cryst1’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:119:3,
inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:277:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 82 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:144:5,
inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 8 bytes from a string of length 52 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:149:5,
inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 8 bytes from a string of length 44 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:154:5,
inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 8 bytes from a string of length 36 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5,
inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5,
inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:609:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
609 | static int fio_write_str(fio_fd fd, const char *str) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:605:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
605 | static int fio_read_int32(fio_fd fd, int *i) {
| ^~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
| ^~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:89:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
| ^~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_pdb_header’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:190:5,
inlined from ‘open_pdb_read’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:79:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 9 bytes from a string of length 32 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_pdb_header’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:200:5,
inlined from ‘open_pdb_read’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:79:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 20 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:299:3,
inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 70 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:304:3,
inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 1 byte from a string of length 66 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:308:3,
inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 65 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:317:3,
inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 60 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5,
inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:326:3,
inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5,
inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:326:3,
inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:330:5,
inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 10 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:339:5,
inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 2 bytes from a string of length 6 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int getUniqueResID(char*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable ‘i’ [-Wunused-variable]
443 | int i, uid;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable ‘j’ [-Wunused-variable]
484 | int i, count, atomdata, pos, idx, xyzcount, j;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable ‘oldChain’ [-Wunused-variable]
503 | char oldChain[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readAngleBonds(molfile_atom_t*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
803 | int bondTable[32];
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable ‘j’ [-Wunused-variable]
807 | int i, pos, j, k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
811 | char modelNum[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable ‘atom’ [-Wunused-variable]
822 | molfile_atom_t * atom;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable ‘test’ [-Wunused-variable]
884 | int test = parser->nbonds + bnum;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readRMSDBonds(molfile_atom_t*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
984 | int bondTable[32];
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable ‘j’ [-Wunused-variable]
988 | int i, pos, j, k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
991 | char modelNum[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable ‘atom’ [-Wunused-variable]
1002 | molfile_atom_t * atom;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘void* open_file_write(const char*, const char*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable ‘fd’ [-Wunused-variable]
1409 | FILE* fd;
| ^~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_structure’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
292 | if (NULL == fgets(fbuffer, 1024, data->file))
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
295 | if (NULL == fgets(fbuffer, 1024, data->file))
| ^~
In file included from /usr/include/string.h:495,
from contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:34:
In function ‘strncpy’,
inlined from ‘read_dlpoly_config_structure’ at contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:362:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In function ‘strncpy’,
inlined from ‘read_dlpoly_structure’ at contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:267:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘int read_dsn6_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
233 | fread(brick, sizeof(char), 512, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘void* open_dsn6_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
91 | fread(fileHeader, sizeof(short), 19, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: ‘fpexpftoc’ defined but not used [-Wunused-function]
1028 | static int fpexpftoc(char *ftocstr) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: ‘have_keyline’ defined but not used [-Wunused-function]
1006 | static int have_keyline(FILE *file, const char *keystring1,
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:962:12: warning: ‘goto_keyline’ defined but not used [-Wunused-function]
962 | static int goto_keyline(FILE *file, ...) {
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: ‘strtoupper’ defined but not used [-Wunused-function]
901 | static char *strtoupper(char *s) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: ‘iswhiteline’ defined but not used [-Wunused-function]
895 | static int iswhiteline(char *s) {
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:846:13: warning: ‘eatwhitelines’ defined but not used [-Wunused-function]
846 | static void eatwhitelines(FILE *file) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:13: warning: ‘eatline’ defined but not used [-Wunused-function]
835 | static void eatline(FILE * fd, int n)
| ^~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: ‘symmetry_expand’ defined but not used [-Wunused-function]
711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:540:13: warning: ‘angular_momentum_expon’ defined but not used [-Wunused-function]
540 | static void angular_momentum_expon(int *ang_mom_expon,
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: ‘del_wavefunction’ defined but not used [-Wunused-function]
507 | static void del_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: ‘replace_wavefunction’ defined but not used [-Wunused-function]
490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
| ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:471:27: warning: ‘add_wavefunction’ defined but not used [-Wunused-function]
471 | static qm_wavefunction_t* add_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: ‘init_qmdata’ defined but not used [-Wunused-function]
437 | static qmdata_t* init_qmdata() {
| ^~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘void* open_plt_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
69 | fread(intHeader, sizeof(int), 5, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
82 | fread(floatHeader, sizeof(float), 6, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void put_element_ply(PlyFile*, void*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable ‘i’ [-Wunused-variable]
459 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void ascii_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable ‘i’ [-Wunused-variable]
1407 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable ‘i’ [-Wunused-variable]
1541 | int i,j,k;
| ^
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1629 | fread (&len, sizeof(int), 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1631 | fread (str, len, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void get_binary_item(FILE*, int, int*, unsigned int*, double*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2057 | fread (ptr, 1, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2063 | fread (ptr, 1, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2069 | fread (ptr, 2, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2075 | fread (ptr, 2, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2081 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2087 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2093 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2099 | fread (ptr, 8, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
243 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
252 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
328 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
346 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
355 | fgets(nextline, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
419 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
194 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
203 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘void* open_bgf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
59 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘char* recreate_command_line(int, char**)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
1334 | line[0] = '\0';
| ~~~~~~~~^~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: at offset 0 to an object with size 0 allocated by ‘malloc’ here
1333 | line = (char *) malloc (sizeof(char) * len);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘int read_brix_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
247 | fread(brick, sizeof(char), 512, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘void* open_brix_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
79 | fscanf(fd, "%3s", keyWord);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
86 | fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
93 | fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
100 | fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
109 | fscanf(fd, " %s %f %f %f %f %f %f", keyWord,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
110 | &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
123 | fscanf(fd, " %s %f", keyWord, &prod);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
128 | fscanf(fd, " %s %f", keyWord, &plus);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
135 | fscanf(fd, " %s %f", keyWord, &sigma);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function ‘int {anonymous}::write_structure(void*, int, const molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1902:9: warning: unused variable ‘last_ctnumber’ [-Wunused-variable]
1902 | int last_ctnumber = -1;
| ^~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘get_atom_radius’:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable ‘type’ set but not used [-Wunused-but-set-variable]
166 | char *name, *type;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable ‘name’ set but not used [-Wunused-but-set-variable]
166 | char *name, *type;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=]
127 | sprintf(atom->resname, "%d", resid);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999]
127 | sprintf(atom->resname, "%d", resid);
| ^~~~
In file included from /usr/include/stdio.h:867,
from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 12 bytes into a destination of size 8
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:495,
from contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:34:
In function ‘strncpy’,
inlined from ‘get_pqr_cryst1’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:109:3,
inlined from ‘read_pqr_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:319:9:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_pqr_fields’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:137:3,
inlined from ‘read_pqr_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 68 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_pqr_fields’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:138:3,
inlined from ‘read_pqr_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 63 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_pqr_fields’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:139:3,
inlined from ‘read_pqr_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 1 byte from a string of length 59 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_pqr_fields’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:140:3,
inlined from ‘read_pqr_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 58 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function ‘write_psf_structure’:
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:782:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
782 | if (strlen(atoms[i].type) > fw) {
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: ‘fortread_4’ defined but not used [-Wunused-function]
103 | static int fortread_4(void *dest, int n, int swap, FILE *fd) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘fort_get_endian_reclen’ defined but not used [-Wunused-function]
55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘fort_eat_recmark’ defined but not used [-Wunused-function]
36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28,
from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘swap8_aligned’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘void* open_ccp4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
304 | fgets(symData, 81, fd);
| ~~~~~^~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function ‘void* open_cube_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
175 | fgets(readbuf, 1023, cube->fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
181 | fgets(readbuf, 1023, cube->fd); // skip second header line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
326 | fgets(readbuf, 1023, cube->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
337 | fgets(readbuf, 1023, cube->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
339 | fscanf(cube->fd, "%d", &cube->nsets);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
344 | fscanf(cube->fd, "%d", &orb);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
349 | fgets(readbuf, 1023, cube->fd); // gobble up rest of line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function ‘open_rst_read’:
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable ‘timesteprst’ set but not used [-Wunused-but-set-variable]
48 | double timesteprst;
| ^~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:60,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:58:
/usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >]’:
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator’ changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from /usr/include/c++/10/map:61,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:58:
/usr/include/c++/10/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = {anonymous}::Blob; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >]’:
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator’ changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function]
111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
| ^~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘void DDmkdir(const string&, mode_t, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:16: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
714 | sprintf(sub, "%03x/", i);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:15: note: directive argument in the range [0, 2147483646]
714 | sprintf(sub, "%03x/", i);
| ^~~~~~~
In file included from /usr/include/stdio.h:867,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 6
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:23: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
722 | sprintf(subsub, "%03x", j);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:22: note: directive argument in the range [0, 2147483646]
722 | sprintf(subsub, "%03x", j);
| ^~~~~~
In file included from /usr/include/stdio.h:867,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 4 and 9 bytes into a destination of size 6
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function ‘int read_spider_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
286 | fread(datablock, total * sizeof(float), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘std::string framefile(const string&, size_t, size_t, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:28: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
675 | sprintf(answer, "%03x/", d1);
| ^
In file included from /usr/include/stdio.h:867,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 9
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:28: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=]
673 | sprintf(answer, "%03x/%03x/", d1, d2);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:22: note: directive argument in the range [0, 2147483646]
673 | sprintf(answer, "%03x/%03x/", d1, d2);
| ^~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 9 and 19 bytes into a destination of size 9
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
96 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
104 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
119 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
131 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
153 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
162 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
171 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function]
111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
| ^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:495,
from contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:41:
In function ‘strncpy’,
inlined from ‘read_tinker_structure’ at contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:103:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
102 | fread(&headersize, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘write_vaspposcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to ‘sizeof’ in ‘strncpy’ call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess]
360 | strncpy(tmptype, atom->type, sizeof(atom->type));
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:40:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Deferred.cpp -o build/temp.linux-armhf-3.9/layer0/Deferred.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Err.cpp -o build/temp.linux-armhf-3.9/layer0/Err.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:47:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from /usr/include/stdio.h:867,
from contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:29:
In function ‘sprintf’,
inlined from ‘vtf_error’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:3,
inlined from ‘vtf_read_bonds’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1203:5,
inlined from ‘vtf_read_bonds’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1193:12:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:58:
/usr/include/c++/10/bits/stl_map.h: In member function ‘int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const’:
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator’ changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator’ changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Feedback.cpp -o build/temp.linux-armhf-3.9/layer0/Feedback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator’ changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator’ changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator’ changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:495,
from contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:32:
In function ‘strncat’,
inlined from ‘vtf_parse_atom’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:538:9,
inlined from ‘vtf_parse_structure’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:812:24,
inlined from ‘_vtf_open_file_read’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:944:5,
inlined from ‘vtf_open_file_read’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:970:10:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
inlined from ‘vtf_parse_atom’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:629:7,
inlined from ‘vtf_parse_structure’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:812:24,
inlined from ‘_vtf_open_file_read’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:944:5,
inlined from ‘vtf_open_file_read’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:970:10:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
371 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
306 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
288 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
297 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
365 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
387 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
395 | fgets(nextline, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
455 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
241 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
250 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘void* open_xbgf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
72 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Field.cpp -o build/temp.linux-armhf-3.9/layer0/Field.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void eatline(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
238 | fgets(readbuf, 1024, fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void* open_xsf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
408 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
442 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
444 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
446 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
448 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
450 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
473 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
508 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:495,
from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:53:
In function ‘strncpy’,
inlined from ‘read_xyz_structure’ at contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:133:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Block.cpp -o build/temp.linux-armhf-3.9/layer0/Block.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘int read_edm_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
240 | fgets(readbuf, 13, edm->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘void eatline(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
44 | fgets(readbuf, 1024, fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/File.cpp -o build/temp.linux-armhf-3.9/layer0/File.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function ‘void* open_fs4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
79 | fread(&dataBegin, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
278 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
297 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
319 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
357 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
223 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
241 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘void* open_mdf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
164 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
176 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
183 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘have_gamess’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
1106 | char word[3][BUFSIZ];
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_stats’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
2264 | char word[7][BUFSIZ];
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_wavefunction’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
3573 | char word[6][BUFSIZ];
| ^~~~
At top level:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1002:13: warning: ‘print_input_data’ defined but not used [-Wunused-function]
1002 | static void print_input_data(qmdata_t *data) {
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function]
109 | static float get_pte_vdw_radius(const int idx)
| ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function]
102 | static float get_pte_mass(const int idx)
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function]
95 | static const char *get_pte_label(const int idx)
| ^~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: ‘fpexpftoc’ defined but not used [-Wunused-function]
1028 | static int fpexpftoc(char *ftocstr) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: ‘strtoupper’ defined but not used [-Wunused-function]
901 | static char *strtoupper(char *s) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: ‘iswhiteline’ defined but not used [-Wunused-function]
895 | static int iswhiteline(char *s) {
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
275 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
289 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
199 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
209 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
127 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
138 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘void* open_mol2_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
74 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
81 | fgets(line, LINESIZE, fd); // Read and ignore the mol_name
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
82 | fgets(line, LINESIZE, fd); // Read the molecule info
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
91 | fgets(line, LINESIZE, fd); // Read and ignore the mol_type
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
92 | fgets(line, LINESIZE, fd); // Read the charge_type
| ~~~~~^~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/GenericBuffer.cpp -o build/temp.linux-armhf-3.9/layer0/GenericBuffer.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Crystal.cpp -o build/temp.linux-armhf-3.9/layer0/Crystal.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from /usr/include/string.h:495,
from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:155:
In function ‘strncpy’,
inlined from ‘read_gamess_rundata’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:615:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘read_gamess_rundata’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:620:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4096 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘read_gamess_rundata’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:621:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘read_gamess_rundata’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:622:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1618:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_rundata’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable ‘hessian_data’ set but not used [-Wunused-but-set-variable]
596 | molfile_qm_hessian_t *hessian_data;
| ^~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: ‘have_keyline’ defined but not used [-Wunused-function]
1006 | static int have_keyline(FILE *file, const char *keystring1,
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: ‘symmetry_expand’ defined but not used [-Wunused-function]
711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: ‘del_wavefunction’ defined but not used [-Wunused-function]
507 | static void del_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: ‘replace_wavefunction’ defined but not used [-Wunused-function]
490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
| ^~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:48:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function]
109 | static float get_pte_vdw_radius(const int idx)
| ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function]
102 | static float get_pte_mass(const int idx)
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function]
95 | static const char *get_pte_label(const int idx)
| ^~~~~~~~~~~~~
In file included from /usr/include/string.h:495,
from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:34:
In function ‘strncpy’,
inlined from ‘read_molden_structure’ at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:350:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘read_molden_structure’ at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:351:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘read_molden_structure’ at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:317:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘read_molden_structure’ at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:326:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 11 bytes from a string of length 1023 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
inlined from ‘get_basis_options’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1422:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
inlined from ‘get_basis_options’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1411:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_fmoxyz’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1682:5,
inlined from ‘get_input_structure’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1537:12:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_proc_mem.isra’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1279:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 256 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_proc_mem.isra’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1272:5:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_contrl’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1981:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
inlined from ‘get_contrl_firefly’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1818:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/GraphicsUtil.cpp -o build/temp.linux-armhf-3.9/layer0/GraphicsUtil.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Pixmap.cpp -o build/temp.linux-armhf-3.9/layer0/Pixmap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In function ‘strncpy’,
inlined from ‘symmetry_expand’ at contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:819:5,
inlined from ‘get_traj_frame.constprop’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2931:7:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 10 bytes from a string of length 10 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Isosurf.cpp -o build/temp.linux-armhf-3.9/layer0/Isosurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
91 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
116 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
132 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
149 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
155 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/PostProcess.cpp -o build/temp.linux-armhf-3.9/layer0/PostProcess.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
161 | fgets(line, 80, infile); //one more read to keep us in sync
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
170 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
217 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
237 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
256 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘void line3(FILE*, GRASSP*)’:
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
186 | fread(line3, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro ‘TRASH’
284 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
285 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro ‘TRASH’
291 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro ‘TRASH’
305 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
306 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro ‘TRASH’
307 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro ‘TRASH’
311 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro ‘TRASH’
313 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro ‘TRASH’
318 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
319 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro ‘TRASH’
320 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro ‘TRASH’
328 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
329 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro ‘TRASH’
330 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro ‘TRASH’
354 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
355 | fread(vertex, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro ‘TRASH’
356 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro ‘TRASH’
357 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
358 | fread(access, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro ‘TRASH’
359 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro ‘TRASH’
360 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
361 | fread(normal, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro ‘TRASH’
362 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro ‘TRASH’
371 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
372 | fread(triangle, 3 * sizeof(int), ntriangles, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro ‘TRASH’
373 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro ‘TRASH’
374 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
375 | fread(properties, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro ‘TRASH’
394 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
395 | fread(striangle, sizeof(short), 3 * ntriangles, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro ‘TRASH’
396 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro ‘TRASH’
397 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
398 | fread(properties, sizeof(float), 3 * nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable ‘numatoms’ set but not used [-Wunused-but-set-variable]
103 | int i, numatoms;
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘write_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:206:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
206 | if (fwrite(tmp, sizeof(double), 3*n, namdbin->fd) != 3*n) {
| ^~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_structure’:
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:730:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
730 | if (len > sizeof(name)) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:1060:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
1060 | for (i=0; i<(3 * mmtk->atom_numberdim); i++) {
| ^
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function ‘void* open_grid_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
84 | fread(&dataBegin, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘int mdio_readline(md_file*, char*, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
426 | fgets(buf, n, mf->f);
| ~~~~~^~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/ShaderMgr.cpp -o build/temp.linux-armhf-3.9/layer0/ShaderMgr.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function ‘int read_parm7_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
78 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
204 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
257 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_resnames(const char*, int, char*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
275 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
289 | fscanf(file, " %d", &cur);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘parmstruct* read_parm7_header(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
368 | fgets(sdum, 512, file);
| ~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
371 | fscanf(file, "%s\n", sdum); // "%FLAG"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
378 | fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
385 | fscanf(file, "%s\n", sdum); // "FORMAT (20a4)"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
399 | fgets(prm->title, sizeof(prm->title), file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
427 | fgets(sdum, sizeof(sdum), file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
439 | fscanf(file,parm7,
| ~~~~~~^~~~~~~~~~~~
440 | &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
441 | &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
442 | &prm->Jparm, &prm->Nparm);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
443 | fscanf(file, parm7,
| ~~~~~~^~~~~~~~~~~~~
444 | &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
445 | &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
446 | &prm->Natyp, &prm->Nphb);
| ~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
447 | fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
448 | &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
449 | &prm->IfBox, &prm->Nmxrs, &prm->IfCap);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
451 | fscanf(file,"%8d",&prm->Numextra); //BB
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int read_parm7_flag(FILE*, const char*, const char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
79 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
87 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
97 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function ‘int {anonymous}::ReadPARM::readparm(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
435 | fscanf(file, " " DBLFMT, &prm->Charges[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
444 | fscanf(file, " " DBLFMT, &prm->Masses[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
510 | fscanf(file, " " DBLFMT, &prm->Rk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
517 | fscanf(file, " " DBLFMT, &prm->Req[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
524 | fscanf(file, " " DBLFMT, &prm->Tk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
531 | fscanf(file, " " DBLFMT, &prm->Teq[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
538 | fscanf(file, " " DBLFMT, &prm->Pk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
545 | fscanf(file, " " DBLFMT, &prm->Pn[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
552 | fscanf(file, " " DBLFMT, &prm->Phase[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
559 | fscanf(file, " " DBLFMT, &prm->Solty[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
567 | fscanf(file, " " DBLFMT, &prm->Cn1[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
575 | fscanf(file, " " DBLFMT, &prm->Cn2[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
756 | fscanf(file, " " DBLFMT, &prm->HB12[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
763 | fscanf(file, " " DBLFMT, &prm->HB6[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
771 | fscanf(file, " " DBLFMT, &H[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
853 | fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
854 | &prm->Box[0], &prm->Box[1], &prm->Box[2]);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
867 | fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
868 | &prm->Natcap, &prm->Cutcap,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
869 | &prm->Xcap, &prm->Ycap, &prm->Zcap);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Basis.cpp -o build/temp.linux-armhf-3.9/layer1/Basis.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUTHel18.cpp -o build/temp.linux-armhf-3.9/layer1/FontGLUTHel18.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontType.cpp -o build/temp.linux-armhf-3.9/layer1/FontType.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Map.cpp -o build/temp.linux-armhf-3.9/layer0/Map.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/ButMode.cpp -o build/temp.linux-armhf-3.9/layer1/ButMode.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Movie.cpp -o build/temp.linux-armhf-3.9/layer1/Movie.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Match.cpp -o build/temp.linux-armhf-3.9/layer0/Match.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Matrix.cpp -o build/temp.linux-armhf-3.9/layer0/Matrix.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/CGO.cpp -o build/temp.linux-armhf-3.9/layer1/CGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Ortho.cpp -o build/temp.linux-armhf-3.9/layer1/Ortho.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/MemoryDebug.cpp -o build/temp.linux-armhf-3.9/layer0/MemoryDebug.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/MyPNG.cpp -o build/temp.linux-armhf-3.9/layer0/MyPNG.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/ShaderPrg.cpp -o build/temp.linux-armhf-3.9/layer0/ShaderPrg.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Parse.cpp -o build/temp.linux-armhf-3.9/layer0/Parse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SceneRender.cpp -o build/temp.linux-armhf-3.9/layer1/SceneRender.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Sphere.cpp -o build/temp.linux-armhf-3.9/layer0/Sphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In function ‘int add_normal_char(COrtho*, unsigned char)’,
inlined from ‘void OrthoKey(PyMOLGlobals*, unsigned char, int, int, int)’ at layer1/Ortho.cpp:873:30:
layer1/Ortho.cpp:850:34: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
850 | I->Line[curLine][I->CurChar] = 0;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
layer1/Ortho.cpp: In function ‘void OrthoKey(PyMOLGlobals*, unsigned char, int, int, int)’:
layer1/Ortho.cpp:80:17: note: at offset 0 to object ‘COrtho::Line’ with size 262144 declared here
80 | OrthoLineType Line[OrthoSaveLines + 1]{};
| ^~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Tetsurf.cpp -o build/temp.linux-armhf-3.9/layer0/Tetsurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/P.cpp -o build/temp.linux-armhf-3.9/layer1/P.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/ScrollBar.cpp -o build/temp.linux-armhf-3.9/layer1/ScrollBar.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer1/P.cpp: In function ‘void PSetupEmbedded(PyMOLGlobals*, int, char**)’:
layer1/P.cpp:1961:22: warning: ‘void PyEval_InitThreads()’ is deprecated [-Wdeprecated-declarations]
1961 | PyEval_InitThreads();
| ^
In file included from /usr/include/python3.9/Python.h:145,
from layer0/os_python.h:32,
from layer1/P.cpp:26:
/usr/include/python3.9/ceval.h:130:37: note: declared here
130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void);
| ^~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Seq.cpp -o build/temp.linux-armhf-3.9/layer1/Seq.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Texture.cpp -o build/temp.linux-armhf-3.9/layer0/Texture.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/PConv.cpp -o build/temp.linux-armhf-3.9/layer1/PConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Setting.cpp -o build/temp.linux-armhf-3.9/layer1/Setting.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Tracker.cpp -o build/temp.linux-armhf-3.9/layer0/Tracker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Picking.cpp -o build/temp.linux-armhf-3.9/layer1/Picking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Pop.cpp -o build/temp.linux-armhf-3.9/layer1/Pop.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Triangle.cpp -o build/temp.linux-armhf-3.9/layer0/Triangle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/PyMOLObject.cpp -o build/temp.linux-armhf-3.9/layer1/PyMOLObject.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Ray.cpp -o build/temp.linux-armhf-3.9/layer1/Ray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Util.cpp -o build/temp.linux-armhf-3.9/layer0/Util.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Util2.cpp -o build/temp.linux-armhf-3.9/layer0/Util2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Vector.cpp -o build/temp.linux-armhf-3.9/layer0/Vector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer1/Ray.cpp: In function ‘void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)’:
layer1/Ray.cpp:1538:20: warning: ‘%s’ directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=]
1538 | "%s"
| ^~
......
1543 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
| ~~~~~~~~
layer1/Ray.cpp:1533:18: note: ‘sprintf’ output between 116 and 3302 bytes into a destination of size 1024
1533 | sprintf(buffer,
| ~~~~~~~^~~~~~~~
1534 | "Transform {\n"
| ~~~~~~~~~~~~~~~
1535 | " translation %8.6f %8.6f %8.6f\n"
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1536 | " rotation %8.6f %8.6f %8.6f %8.6f\n"
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1537 | " children [\n"
| ~~~~~~~~~~~~~~~
1538 | "%s"
| ~~~~
1539 | " ]\n"
| ~~~~~~
1540 | "}\n",
| ~~~~~~
1541 | vert2[0] - mid[0],
| ~~~~~~~~~~~~~~~~~~
1542 | vert2[1] - mid[1],
| ~~~~~~~~~~~~~~~~~~
1543 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Word.cpp -o build/temp.linux-armhf-3.9/layer0/Word.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/os_gl.cpp -o build/temp.linux-armhf-3.9/layer0/os_gl.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/CifFile.cpp -o build/temp.linux-armhf-3.9/layer2/CifFile.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/CifMoleculeReader.cpp -o build/temp.linux-armhf-3.9/layer2/CifMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/COLLADA.cpp -o build/temp.linux-armhf-3.9/layer1/COLLADA.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Rep.cpp -o build/temp.linux-armhf-3.9/layer1/Rep.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Scene.cpp -o build/temp.linux-armhf-3.9/layer1/Scene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Character.cpp -o build/temp.linux-armhf-3.9/layer1/Character.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from /usr/include/c++/10/map:60,
from layer2/CifMoleculeReader.cpp:9:
/usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long int&&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, res_bond_dict_t>; _KeyOfValue = std::_Select1st<std::pair<const long long int, res_bond_dict_t> >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, res_bond_dict_t> >]’:
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, res_bond_dict_t>, std::_Select1st<std::pair<const long long int, res_bond_dict_t> >, std::less<long long int>, std::allocator<std::pair<const long long int, res_bond_dict_t> > >::const_iterator’ changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Color.cpp -o build/temp.linux-armhf-3.9/layer1/Color.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from /usr/include/c++/10/map:61,
from layer2/CifMoleculeReader.cpp:9:
/usr/include/c++/10/bits/stl_map.h: In function ‘bool read_chem_comp_bond_dict(const pymol::cif_data*, bond_dict_t&)’:
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, res_bond_dict_t>, std::_Select1st<std::pair<const long long int, res_bond_dict_t> >, std::less<long long int>, std::allocator<std::pair<const long long int, res_bond_dict_t> > >::const_iterator’ changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, res_bond_dict_t>, std::_Select1st<std::pair<const long long int, res_bond_dict_t> >, std::less<long long int>, std::allocator<std::pair<const long long int, res_bond_dict_t> > >::const_iterator’ changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Control.cpp -o build/temp.linux-armhf-3.9/layer1/Control.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer1/Scene.cpp: In function ‘int SceneClick(Block*, int, int, int, int, double)’:
layer1/Scene.cpp:4227:36: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=]
4227 | PRINTF " You clicked %s", buffer ENDF(G);
| ^~ ~~~~~~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer1/Scene.cpp:33:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 14 and 1037 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer1/Scene.cpp:4227:15: note: in expansion of macro ‘PRINTF’
4227 | PRINTF " You clicked %s", buffer ENDF(G);
| ^~~~~~
layer1/Scene.cpp:4097:34: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=]
4097 | PRINTF " You clicked %s -> (%s)", buffer, cEditorSele1 ENDF(G);
| ^~ ~~~~~~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer1/Scene.cpp:33:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 23 and 1046 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer1/Scene.cpp:4097:13: note: in expansion of macro ‘PRINTF’
4097 | PRINTF " You clicked %s -> (%s)", buffer, cEditorSele1 ENDF(G);
| ^~~~~~
layer1/Scene.cpp:4113:36: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=]
4113 | PRINTF " You clicked %s -> (%s)", buffer, cEditorSele2 ENDF(G);
| ^~ ~~~~~~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer1/Scene.cpp:33:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 23 and 1046 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer1/Scene.cpp:4113:15: note: in expansion of macro ‘PRINTF’
4113 | PRINTF " You clicked %s -> (%s)", buffer, cEditorSele2 ENDF(G);
| ^~~~~~
layer1/Scene.cpp:4121:43: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1014 [-Wformat-overflow=]
4121 | sprintf(buffer, "cmd.edit(\"%s\",\"%s\")", buf1, buf2);
| ^~ ~~~~
layer1/Scene.cpp:4121:22: note: ‘sprintf’ output between 16 and 2062 bytes into a destination of size 1024
4121 | sprintf(buffer, "cmd.edit(\"%s\",\"%s\")", buf1, buf2);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:3984:38: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=]
3984 | PRINTF " You clicked %s -> (%s)\n", buffer, cEditorSele1 ENDF(G);
| ^~ ~~~~~~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer1/Scene.cpp:33:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 24 and 1047 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer1/Scene.cpp:3984:17: note: in expansion of macro ‘PRINTF’
3984 | PRINTF " You clicked %s -> (%s)\n", buffer, cEditorSele1 ENDF(G);
| ^~~~~~
layer1/Scene.cpp:3990:43: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1014 [-Wformat-overflow=]
3990 | sprintf(buf2, "cmd.edit(\"%s\",pkresi=1)", buffer);
| ^~ ~~~~~~
layer1/Scene.cpp:3990:24: note: ‘sprintf’ output between 22 and 1045 bytes into a destination of size 1024
3990 | sprintf(buf2, "cmd.edit(\"%s\",pkresi=1)", buffer);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4018:39: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
4018 | PRINTF " You unpicked %s.", buffer ENDF(G);
| ^~ ~~~~~~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer1/Scene.cpp:33:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 16 and 1039 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer1/Scene.cpp:4018:17: note: in expansion of macro ‘PRINTF’
4018 | PRINTF " You unpicked %s.", buffer ENDF(G);
| ^~~~~~
layer1/Scene.cpp:4031:64: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=]
4031 | PRINTFB(G, FB_Scene, FB_Results) " You clicked %s -> (%s)\n", buffer,
| ^~ ~~~~~~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer1/Scene.cpp:33:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 21 and 1299 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer1/Scene.cpp:4031:17: note: in expansion of macro ‘PRINTFB’
4031 | PRINTFB(G, FB_Scene, FB_Results) " You clicked %s -> (%s)\n", buffer,
| ^~~~~~~
layer1/Scene.cpp:4285:34: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=]
4285 | PRINTF " You clicked %s", buffer ENDF(G);
| ^~ ~~~~~~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer1/Scene.cpp:33:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 14 and 1037 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer1/Scene.cpp:4285:13: note: in expansion of macro ‘PRINTF’
4285 | PRINTF " You clicked %s", buffer ENDF(G);
| ^~~~~~
layer1/Scene.cpp:4319:53: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=]
4319 | sprintf(buffer, "cmd.drag(\"byobject (%s)\")", buf1);
| ^~ ~~~~
layer1/Scene.cpp:4319:22: note: ‘sprintf’ output between 24 and 1047 bytes into a destination of size 1024
4319 | sprintf(buffer, "cmd.drag(\"byobject (%s)\")", buf1);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4310:50: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1007 [-Wformat-overflow=]
4310 | sprintf(buffer, "cmd.drag(\"bymol (%s)\")", buf1);
| ^~ ~~~~
layer1/Scene.cpp:4310:22: note: ‘sprintf’ output between 21 and 1044 bytes into a destination of size 1024
4310 | sprintf(buffer, "cmd.drag(\"bymol (%s)\")", buf1);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4369:45: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=]
4369 | sprintf(buffer, "cmd.center(\"%s\",state=%d)", buf1, I->LastPicked.context.state + 1);
| ^~ ~~~~
layer1/Scene.cpp:4369:31: note: directive argument in the range [-2147483647, 2147483647]
4369 | sprintf(buffer, "cmd.center(\"%s\",state=%d)", buf1, I->LastPicked.context.state + 1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4369:22: note: ‘sprintf’ output between 23 and 1056 bytes into a destination of size 1024
4369 | sprintf(buffer, "cmd.center(\"%s\",state=%d)", buf1, I->LastPicked.context.state + 1);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4341:47: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=]
4341 | sprintf(buffer, "cmd.origin(\"%s\")", buf1);
| ^~ ~~~~
layer1/Scene.cpp:4341:24: note: ‘sprintf’ output between 15 and 1038 bytes into a destination of size 1024
4341 | sprintf(buffer, "cmd.origin(\"%s\")", buf1);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4347:38: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=]
4347 | PRINTF " You clicked %s", buffer ENDF(G);
| ^~ ~~~~~~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer1/Scene.cpp:33:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 14 and 1037 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer1/Scene.cpp:4347:17: note: in expansion of macro ‘PRINTF’
4347 | PRINTF " You clicked %s", buffer ENDF(G);
| ^~~~~~
layer1/Scene.cpp:4434:35: warning: ‘)’ directive writing 1 byte into a region of size between 0 and 1023 [-Wformat-overflow=]
4434 | sprintf(buf2, "%s(%s)", sel_mode_kw, buffer);
| ^
layer1/Scene.cpp:4434:22: note: ‘sprintf’ output between 3 and 1026 bytes into a destination of size 1024
4434 | sprintf(buf2, "%s(%s)", sel_mode_kw, buffer);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4441:57: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1008 [-Wformat-overflow=]
4441 | sprintf(buffer, "cmd.select('%s',\"%s(%s)\")", selName, sel_mode_kw,
| ^~
4442 | buf1);
| ~~~~
layer1/Scene.cpp:4441:26: note: ‘sprintf’ output 20 or more bytes (assuming 1043) into a destination of size 1024
4441 | sprintf(buffer, "cmd.select('%s',\"%s(%s)\")", selName, sel_mode_kw,
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4442 | buf1);
| ~~~~~
layer1/Scene.cpp:4416:43: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1015 [-Wformat-overflow=]
4416 | sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))",
| ^~
4417 | selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw,
| ~~~~~~
layer1/Scene.cpp:4416:22: note: ‘sprintf’ output 35 or more bytes (assuming 2081) into a destination of size 1024
4416 | sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))",
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4417 | selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4418 | selName);
| ~~~~~~~~
layer1/Scene.cpp:4425:47: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1015 [-Wformat-overflow=]
4425 | sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))",
| ^~
4426 | selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw,
| ~~~~~~
layer1/Scene.cpp:4425:26: note: ‘sprintf’ output 35 or more bytes (assuming 2081) into a destination of size 1024
4425 | sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))",
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4426 | selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4427 | selName);
| ~~~~~~~~
layer1/Scene.cpp:4428:57: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1008 [-Wformat-overflow=]
4428 | sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName,
| ^~
4429 | sel_mode_kw, buf2);
| ~~~~
layer1/Scene.cpp:4428:26: note: ‘sprintf’ output 29 or more bytes (assuming 1052) into a destination of size 1024
4428 | sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName,
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4429 | sel_mode_kw, buf2);
| ~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4393:32: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1022 [-Wformat-overflow=]
4393 | sprintf(buf2, "(%s(%s))", sel_mode_kw, buffer);
| ^~ ~~~~~~
layer1/Scene.cpp:4393:20: note: ‘sprintf’ output between 5 and 1028 bytes into a destination of size 1024
4393 | sprintf(buf2, "(%s(%s))", sel_mode_kw, buffer);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4404:55: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1008 [-Wformat-overflow=]
4404 | sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName,
| ^~
4405 | sel_mode_kw, buf1);
| ~~~~
layer1/Scene.cpp:4404:24: note: ‘sprintf’ output 29 or more bytes (assuming 1052) into a destination of size 1024
4404 | sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName,
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4405 | sel_mode_kw, buf1);
| ~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/ScenePicking.cpp -o build/temp.linux-armhf-3.9/layer1/ScenePicking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/CoordSet.cpp -o build/temp.linux-armhf-3.9/layer2/CoordSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Extrude.cpp -o build/temp.linux-armhf-3.9/layer1/Extrude.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SceneRay.cpp -o build/temp.linux-armhf-3.9/layer1/SceneRay.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer2/CoordSet.cpp: In member function ‘void CoordSet::update(int)’:
layer2/CoordSet.cpp:1240:72: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=]
1240 | PRINTFB(G, FB_CoordSet, FB_Blather) " CoordSetUpdate-Entered: object %s state %d cset %p\n",
| ^~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/DistSet.cpp -o build/temp.linux-armhf-3.9/layer2/DistSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Font.cpp -o build/temp.linux-armhf-3.9/layer1/Font.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUT.cpp -o build/temp.linux-armhf-3.9/layer1/FontGLUT.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectGadget.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectGadget.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/GadgetSet.cpp -o build/temp.linux-armhf-3.9/layer2/GadgetSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUT8x13.cpp -o build/temp.linux-armhf-3.9/layer1/FontGLUT8x13.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUT9x15.cpp -o build/temp.linux-armhf-3.9/layer1/FontGLUT9x15.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUTHel10.cpp -o build/temp.linux-armhf-3.9/layer1/FontGLUTHel10.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectGadgetRamp.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectGadgetRamp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUTHel12.cpp -o build/temp.linux-armhf-3.9/layer1/FontGLUTHel12.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDistDash.cpp -o build/temp.linux-armhf-3.9/layer2/RepDistDash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/HydrogenAdder.cpp -o build/temp.linux-armhf-3.9/layer2/HydrogenAdder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectGroup.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectGroup.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDistLabel.cpp -o build/temp.linux-armhf-3.9/layer2/RepDistLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/MmodTyping.cpp -o build/temp.linux-armhf-3.9/layer2/MmodTyping.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/MmtfMoleculeReader.cpp -o build/temp.linux-armhf-3.9/layer2/MmtfMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMap.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectMap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/Mol2Typing.cpp -o build/temp.linux-armhf-3.9/layer2/Mol2Typing.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDot.cpp -o build/temp.linux-armhf-3.9/layer2/RepDot.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/MolV3000.cpp -o build/temp.linux-armhf-3.9/layer2/MolV3000.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepEllipsoid.cpp -o build/temp.linux-armhf-3.9/layer2/RepEllipsoid.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectAlignment.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectAlignment.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer2/ObjectMap.cpp: In function ‘void ObjectMapDump(const ObjectMap*, const char*, int, int)’:
layer2/ObjectMap.cpp:5982:24: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 239 [-Wformat-truncation=]
5982 | " ObjectMapDump: %s written to %s\n", om->Name, fname ENDFB(om->G);
| ^~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output 30 or more bytes (assuming 285) into a destination of size 255
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepLabel.cpp -o build/temp.linux-armhf-3.9/layer2/RepLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectCGO.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectCGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)’:
layer2/ObjectMap.cpp:2977:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2977 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:2986:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2986 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:2992:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2992 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:3074:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
3074 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepMesh.cpp -o build/temp.linux-armhf-3.9/layer2/RepMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer2/ObjectMap.cpp: In function ‘int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:4297:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
4297 | " ObjectMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:4297:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
4297 | " ObjectMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer2/ObjectMap.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectCallback.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectCallback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMesh.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectDist.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectDist.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepNonbonded.cpp -o build/temp.linux-armhf-3.9/layer2/RepNonbonded.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Shaker.cpp -o build/temp.linux-armhf-3.9/layer1/Shaker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer2/ObjectMesh.cpp: In function ‘void ObjectMeshDump(ObjectMesh*, const char*, int, int)’:
layer2/ObjectMesh.cpp:329:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
329 | " ObjectMeshDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectMesh.cpp:33:
layer0/Feedback.h:274:15: note: ‘snprintf’ output 31 or more bytes (assuming 286) into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:328:7: note: in expansion of macro ‘PRINTFB’
328 | PRINTFB(I->G, FB_ObjectMesh, FB_Actions)
| ^~~~~~~
layer2/ObjectMesh.cpp: In member function ‘virtual void ObjectMesh::update()’:
layer2/ObjectMesh.cpp:507:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=]
507 | "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectMesh.cpp:33:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 50 and 305 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:506:9: note: in expansion of macro ‘PRINTFB’
506 | PRINTFB(I->G, FB_ObjectMesh, FB_Errors)
| ^~~~~~~
layer2/ObjectMesh.cpp:540:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=]
540 | " ObjectMesh: updating \"%s\".\n", I->Name ENDFB(G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectMesh.cpp:33:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 27 and 282 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:539:13: note: in expansion of macro ‘PRINTFB’
539 | PRINTFB(G, FB_ObjectMesh, FB_Details)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/Sculpt.cpp -o build/temp.linux-armhf-3.9/layer2/Sculpt.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepNonbondedSphere.cpp -o build/temp.linux-armhf-3.9/layer2/RepNonbondedSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Symmetry.cpp -o build/temp.linux-armhf-3.9/layer1/Symmetry.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMolecule.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectMolecule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Text.cpp -o build/temp.linux-armhf-3.9/layer1/Text.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepRibbon.cpp -o build/temp.linux-armhf-3.9/layer2/RepRibbon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer2/ObjectMolecule.cpp: In function ‘CoordSet* ObjectMoleculeMOLStr2CoordSet.constprop(PyMOLGlobals*, const char*, AtomInfoType**, const char**)’:
layer2/ObjectMolecule.cpp:7785:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=]
7785 | " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G)
| ^~ ~~~~~~~
In file included from layer1/Ortho.h:32,
from layer2/ObjectMolecule.cpp:35:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 34 and 289 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMolecule.cpp:7784:3: note: in expansion of macro ‘PRINTFB’
7784 | PRINTFB(G, FB_ObjectMolecule, FB_Blather)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSphere.cpp -o build/temp.linux-armhf-3.9/layer2/RepSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/SculptCache.cpp -o build/temp.linux-armhf-3.9/layer2/SculptCache.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/SideChainHelper.cpp -o build/temp.linux-armhf-3.9/layer2/SideChainHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/VFont.cpp -o build/temp.linux-armhf-3.9/layer2/VFont.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSphereGenerate.cpp -o build/temp.linux-armhf-3.9/layer2/RepSphereGenerate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/AtomIterators.cpp -o build/temp.linux-armhf-3.9/layer3/AtomIterators.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer2/ObjectMolecule.cpp: In member function ‘virtual void ObjectMolecule::update()’:
layer2/ObjectMolecule.cpp:10827:82: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=]
10827 | " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer2/ObjectMolecule.cpp:35:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 68 and 333 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMolecule.cpp:10826:13: note: in expansion of macro ‘PRINTFB’
10826 | PRINTFB(G, FB_ObjectMolecule, FB_Blather)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSphereImmediate.cpp -o build/temp.linux-armhf-3.9/layer2/RepSphereImmediate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer2/ObjectMolecule.cpp: In function ‘int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, const float*, int, int)’:
layer2/ObjectMolecule.cpp:10955:43: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=]
10955 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ^~
10956 | buffer, v[0], v[1], v[2], state + 1, mode, 0);
| ~~~~~~
layer2/ObjectMolecule.cpp:10955:21: note: directive argument in the range [-2147483647, 2147483647]
10955 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp:10955:14: note: ‘sprintf’ output between 78 and 2036 bytes into a destination of size 1024
10955 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
10956 | buffer, v[0], v[1], v[2], state + 1, mode, 0);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/CifDataValueFormatter.cpp -o build/temp.linux-armhf-3.9/layer3/CifDataValueFormatter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Editor.cpp -o build/temp.linux-armhf-3.9/layer3/Editor.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSurface.cpp -o build/temp.linux-armhf-3.9/layer2/RepSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/Editor.cpp: In function ‘void EditorPrepareDrag(PyMOLGlobals*, CObject*, int, int, int, int)’:
layer3/Editor.cpp:1944:29: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
1944 | " Editor: grabbing (%s).", name ENDFB(G);
| ^~ ~~~~
In file included from layer1/Ortho.h:32,
from layer1/ButMode.h:20,
from layer3/Editor.cpp:28:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 22 and 277 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Editor.cpp:1943:7: note: in expansion of macro ‘PRINTFB’
1943 | PRINTFB(G, FB_Editor, FB_Blather)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMolecule2.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectMolecule2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/Editor.cpp: In function ‘void EditorDefineExtraPks(PyMOLGlobals*)’:
layer3/Editor.cpp:335:29: warning: ‘%s’ directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=]
335 | sprintf(buffer, "(byres %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:335:12: note: ‘sprintf’ output between 9 and 264 bytes into a destination of size 256
335 | sprintf(buffer, "(byres %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:337:31: warning: ‘%s’ directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=]
337 | sprintf(buffer, "(bychain %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:337:12: note: ‘sprintf’ output between 11 and 266 bytes into a destination of size 256
337 | sprintf(buffer, "(bychain %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:339:32: warning: ‘%s’ directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=]
339 | sprintf(buffer, "(byobject %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:339:12: note: ‘sprintf’ output between 12 and 267 bytes into a destination of size 256
339 | sprintf(buffer, "(byobject %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/TypeFace.cpp -o build/temp.linux-armhf-3.9/layer1/TypeFace.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/View.cpp -o build/temp.linux-armhf-3.9/layer1/View.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Executive.cpp -o build/temp.linux-armhf-3.9/layer3/Executive.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Wizard.cpp -o build/temp.linux-armhf-3.9/layer1/Wizard.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveLoad(PyMOLGlobals*, const ExecutiveLoadArgs&)’:
layer3/Executive.cpp:3914:15: warning: unused variable ‘object_props’ [-Wunused-variable]
3914 | const char* object_props = args.object_props.c_str();
| ^~~~~~~~~~~~
layer3/Executive.cpp:3915:15: warning: unused variable ‘atom_props’ [-Wunused-variable]
3915 | const char* atom_props = args.atom_props.c_str();
| ^~~~~~~~~~
layer3/Executive.cpp:3924:8: warning: unused variable ‘mimic’ [-Wunused-variable]
3924 | auto mimic = args.mimic;
| ^~~~~
layer2/ObjectMolecule2.cpp: In function ‘int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, const float*, int, int, int, int)’:
layer2/ObjectMolecule2.cpp:313:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
313 | " ObjMol: created %s/%s/%s/%s`%d%c/%s\n",
| ^~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer2/ObjectMolecule2.cpp:20:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 26 and 291 bytes into a destination of size 255
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepWireBond.cpp -o build/temp.linux-armhf-3.9/layer2/RepWireBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/AssemblyHelpers.cpp -o build/temp.linux-armhf-3.9/layer2/AssemblyHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectSlice.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectSlice.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/AtomInfo.cpp -o build/temp.linux-armhf-3.9/layer2/AtomInfo.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Seeker.cpp -o build/temp.linux-armhf-3.9/layer3/Seeker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)’:
layer3/Executive.cpp:9162:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=]
9162 | " Remove: eliminated %d atoms in model \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 42 and 307 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9161:15: note: in expansion of macro ‘PRINTFB’
9161 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)’:
layer3/Executive.cpp:11590:28: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11590 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~
11591 | name, nSet, obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11590:17: note: directive argument in the range [1, 2147483647]
11590 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 560 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11589:15: note: in expansion of macro ‘PRINTF’
11589 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function ‘PyObject* ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, const char*, int, int, int)’:
layer3/Executive.cpp:11672:19: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11672 | " Getting: %s for %d bonds in object \"%s\".\n",
| ^~
11673 | name, nSet, obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11672:8: note: directive argument in the range [1, 2147483647]
11672 | " Getting: %s for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 38 and 556 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11671:6: note: in expansion of macro ‘PRINTF’
11671 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)’:
layer3/Executive.cpp:11775:62: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 208 and 217 [-Wformat-truncation=]
11775 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 306) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11774:17: note: in expansion of macro ‘PRINTF’
11774 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveUnsetBondSetting(PyMOLGlobals*, int, const char*, const char*, int, int, int)’:
layer3/Executive.cpp:11851:26: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11851 | " Setting: %s unset for %d bonds in object \"%s\".\n",
| ^~
11852 | name, nSet, rec->obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11851:15: note: directive argument in the range [1, 2147483647]
11851 | " Setting: %s unset for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 44 and 562 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11850:13: note: in expansion of macro ‘PRINTF’
11850 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, const char*, int, int, int)’:
layer3/Executive.cpp:12034:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=]
12034 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 297) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12033:25: note: in expansion of macro ‘PRINTF’
12033 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12034:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=]
12034 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 297) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12033:25: note: in expansion of macro ‘PRINTF’
12033 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11945:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11945 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~
11946 | name, value, nObj, state + 1 ENDF(G);
| ~~~~~
layer3/Executive.cpp:11945:21: note: directive argument in the range [1, 2147483647]
11945 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:11945:21: note: directive argument in the range [1, 2147483647]
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output 43 or more bytes (assuming 1084) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11944:19: note: in expansion of macro ‘PRINTF’
11944 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11942:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11942 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
| ^~ ~~~~~
layer3/Executive.cpp:11942:21: note: directive argument in the range [1, 2147483647]
11942 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output 34 or more bytes (assuming 1066) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11941:19: note: in expansion of macro ‘PRINTF’
11941 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12066:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
12066 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
12067 | name, value, rec->obj->Name, state + 1 ENDF(G);
| ~~~~~
layer3/Executive.cpp:12066:25: note: directive argument in the range [1, 2147483647]
12066 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output 43 or more bytes (assuming 1330) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12065:23: note: in expansion of macro ‘PRINTF’
12065 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12059:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
12059 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
12060 | name, value, rec->obj->Name ENDF(G);
| ~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output 34 or more bytes (assuming 1312) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12058:23: note: in expansion of macro ‘PRINTF’
12058 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11901:39: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11901 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G);
| ^~ ~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output 21 or more bytes (assuming 1044) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11901:11: note: in expansion of macro ‘PRINTF’
11901 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G);
| ^~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)’:
layer3/Executive.cpp:12283:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12283 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
12284 | name, op.i4, rec->obj->Name ENDF(G);
| ~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 561 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12282:23: note: in expansion of macro ‘PRINTF’
12282 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12251:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12251 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~
12252 | name, value2, nObj, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12251:21: note: directive argument in the range [1, 2147483647]
12251 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12251:21: note: directive argument in the range [1, 2147483647]
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1338 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12250:19: note: in expansion of macro ‘PRINTF’
12250 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12248:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12248 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
| ^~ ~~~~
layer3/Executive.cpp:12248:21: note: directive argument in the range [1, 2147483647]
12248 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1320 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12247:19: note: in expansion of macro ‘PRINTF’
12247 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12315:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12315 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
12316 | name, value2, rec->obj->Name, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12315:25: note: directive argument in the range [1, 2147483647]
12315 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12314:23: note: in expansion of macro ‘PRINTF’
12314 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12307:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12307 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
12308 | name, value2, rec->obj->Name ENDF(G);
| ~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12306:23: note: in expansion of macro ‘PRINTF’
12306 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12211:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12211 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~ ~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12211:11: note: in expansion of macro ‘PRINTF’
12211 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, const char*, CObject*, int, int, int)’:
layer3/Executive.cpp:12380:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12380 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
12381 | name, value2, obj->Name, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12380:19: note: directive argument in the range [1, 2147483647]
12380 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12379:17: note: in expansion of macro ‘PRINTF’
12379 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12372:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12372 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
12373 | name, value2, obj->Name ENDF(G);
| ~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12371:17: note: in expansion of macro ‘PRINTF’
12371 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12351:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12351 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~ ~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12351:11: note: in expansion of macro ‘PRINTF’
12351 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveUnsetSetting(PyMOLGlobals*, int, const char*, int, int, int)’:
layer3/Executive.cpp:12490:68: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=]
12490 | " Setting: %s unset for %d atoms in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output 44 or more bytes (assuming 299) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12489:21: note: in expansion of macro ‘PRINTF’
12489 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12515:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12515 | " Setting: %s unset in object \"%s\", state %d.\n",
| ^~
layer3/Executive.cpp:12515:25: note: directive argument in the range [1, 2147483647]
12515 | " Setting: %s unset in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output 41 or more bytes (assuming 305) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12514:23: note: in expansion of macro ‘PRINTF’
12514 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12509:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12509 | " Setting: %s unset in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: ‘snprintf’ output 32 or more bytes (assuming 287) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12508:23: note: in expansion of macro ‘PRINTF’
12508 | PRINTF
| ^~~~~~
layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::update()’:
layer2/ObjectSlice.cpp:639:42: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=]
639 | "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSlice.cpp:34:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 51 and 306 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSlice.cpp:638:9: note: in expansion of macro ‘PRINTFB’
638 | PRINTFB(I->G, FB_ObjectSlice, FB_Errors)
| ^~~~~~~
layer2/ObjectSlice.cpp:650:39: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=]
650 | " ObjectSlice: updating \"%s\".\n", I->Name ENDFB(I->G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSlice.cpp:34:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 28 and 283 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSlice.cpp:649:11: note: in expansion of macro ‘PRINTFB’
649 | PRINTFB(I->G, FB_ObjectSlice, FB_Blather)
| ^~~~~~~
layer3/Seeker.cpp: In function ‘void SeekerSelectionToggleRange(PyMOLGlobals*, CSeqRow*, int, int, int, int, int)’:
layer3/Seeker.cpp:148:50: warning: ‘%s’ directive writing up to 1023 bytes into a region of size between 754 and 1009 [-Wformat-overflow=]
148 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
| ^~
149 | buf1);
| ~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer3/Seeker.cpp:20:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 28 or more bytes (assuming 1306) into a destination of size 1024
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Seeker.cpp: In function ‘void SeekerSelectionToggle(PyMOLGlobals*, CSeqRow*, int, int, int, int)’:
layer3/Seeker.cpp:232:50: warning: ‘%s’ directive writing up to 1023 bytes into a region of size between 754 and 1009 [-Wformat-overflow=]
232 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
| ^~
233 | buf1);
| ~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer3/Seeker.cpp:20:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 28 or more bytes (assuming 1306) into a destination of size 1024
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectSurface.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/AtomInfoHistory.cpp -o build/temp.linux-armhf-3.9/layer2/AtomInfoHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/Executive.cpp: In function ‘bool ExecutiveSetSymmetry(PyMOLGlobals*, pymol::zstring_view, int, const CSymmetry&, bool)’:
layer3/Executive.cpp:6023:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 202 [-Wformat-truncation=]
6023 | " %s-Details: Updated symmetry for '%s'\n", __func__, obj->Name ENDFB(G);
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 311 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:6022:7: note: in expansion of macro ‘PRINTFB’
6022 | PRINTFB(G, FB_Executive, FB_Details)
| ^~~~~~~
layer3/Executive.cpp:6014:46: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=]
6014 | " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__,
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 76 and 331 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:6013:7: note: in expansion of macro ‘PRINTFB’
6013 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Selector.cpp -o build/temp.linux-armhf-3.9/layer3/Selector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int)’:
layer3/Executive.cpp:9495:53: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=]
9495 | " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 35 and 300 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9494:17: note: in expansion of macro ‘PRINTFB’
9494 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp:9508:67: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=]
9508 | " Valence: %d bond valences adjusted in model \"%s\".\n", cnt,
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 314 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9507:17: note: in expansion of macro ‘PRINTFB’
9507 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp:9520:59: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=]
9520 | " Unbond: %d bonds removed from model \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 41 and 306 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9519:17: note: in expansion of macro ‘PRINTFB’
9519 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer2/ObjectSurface.cpp: In function ‘void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)’:
layer2/ObjectSurface.cpp:264:30: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
264 | " ObjectSurfaceDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSurface.cpp:33:
layer0/Feedback.h:274:15: note: ‘snprintf’ output 34 or more bytes (assuming 289) into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSurface.cpp:263:7: note: in expansion of macro ‘PRINTFB’
263 | PRINTFB(I->G, FB_ObjectSurface, FB_Actions)
| ^~~~~~~
layer2/ObjectSurface.cpp: In member function ‘virtual void ObjectSurface::update()’:
layer2/ObjectSurface.cpp:493:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
493 | " ObjectSurface: updating \"%s\".\n", I->Name ENDFB(I->G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSurface.cpp:33:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSurface.cpp:492:13: note: in expansion of macro ‘PRINTFB’
492 | PRINTFB(I->G, FB_ObjectSurface, FB_Details)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectVolume.cpp -o build/temp.linux-armhf-3.9/layer2/ObjectVolume.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/BondTypeHistory.cpp -o build/temp.linux-armhf-3.9/layer2/BondTypeHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/Executive.cpp: In function ‘void ExecutiveManageObject(PyMOLGlobals*, CObject*, int, int)’:
layer3/Executive.cpp:14515:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
14515 | " Executive-Warning: name \"%s\" collides with a selection language keyword.\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 73 and 328 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:14514:7: note: in expansion of macro ‘PRINTFB’
14514 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp:14510:36: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
14510 | " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 61 and 316 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:14509:7: note: in expansion of macro ‘PRINTFB’
14509 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveGroup(PyMOLGlobals*, const char*, const char*, int, int)’:
layer3/Executive.cpp:2366:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
2366 | " Executive: adding '%s' to group '%s'.\n", rec->name, rec->group_name
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 36 and 546 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:2365:17: note: in expansion of macro ‘PRINTFB’
2365 | PRINTFB(G, FB_Executive, FB_Actions)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVOneToAny.cpp -o build/temp.linux-armhf-3.9/ov/src/OVOneToAny.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/Executive.cpp: In function ‘int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)’:
layer3/Executive.cpp:5145:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=]
5145 | " Executive: skipping unrecognized object \"%s\" of type %d.\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 321 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5144:11: note: in expansion of macro ‘PRINTFB’
5144 | PRINTFB(G, FB_Executive, FB_Errors)
| ^~~~~~~
layer3/Executive.cpp:5170:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=]
5170 | "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G);
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 304 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5169:9: note: in expansion of macro ‘PRINTFB’
5169 | PRINTFB(G, FB_Executive, FB_Errors)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVOneToOne.cpp -o build/temp.linux-armhf-3.9/ov/src/OVOneToOne.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/Executive.cpp: In function ‘void ExecutiveSelectRect(PyMOLGlobals*, BlockRect*, int)’:
layer3/Executive.cpp:7355:50: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1009 [-Wformat-overflow=]
7355 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
| ^~
7356 | buffer);
| ~~~~~~
layer3/Executive.cpp:7355:20: note: ‘sprintf’ output 28 or more bytes (assuming 1051) into a destination of size 1024
7355 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
7356 | buffer);
| ~~~~~~~
layer3/Executive.cpp:7341:50: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1009 [-Wformat-overflow=]
7341 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
| ^~
7342 | buffer);
| ~~~~~~
layer3/Executive.cpp:7341:20: note: ‘sprintf’ output 28 or more bytes (assuming 1051) into a destination of size 1024
7341 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
7342 | buffer);
| ~~~~~~~
layer3/Executive.cpp:7331:50: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1009 [-Wformat-overflow=]
7331 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
| ^~
7332 | buffer);
| ~~~~~~
layer3/Executive.cpp:7331:20: note: ‘sprintf’ output 28 or more bytes (assuming 1051) into a destination of size 1024
7331 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
7332 | buffer);
| ~~~~~~~
layer3/Executive.cpp:7323:50: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1009 [-Wformat-overflow=]
7323 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
| ^~
7324 | buffer);
| ~~~~~~
layer3/Executive.cpp:7323:20: note: ‘sprintf’ output 28 or more bytes (assuming 1051) into a destination of size 1024
7323 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
7324 | buffer);
| ~~~~~~~
layer3/Executive.cpp:7314:51: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1008 [-Wformat-overflow=]
7314 | sprintf(buf2, "%scmd.select(\"%s\",\"(%s)\",enable=1)\n", prefix, selName,
| ^~
7315 | buffer);
| ~~~~~~
layer3/Executive.cpp:7314:20: note: ‘sprintf’ output 30 or more bytes (assuming 1053) into a destination of size 1024
7314 | sprintf(buf2, "%scmd.select(\"%s\",\"(%s)\",enable=1)\n", prefix, selName,
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
7315 | buffer);
| ~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVRandom.cpp -o build/temp.linux-armhf-3.9/ov/src/OVRandom.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer2/ObjectVolume.cpp: In function ‘ObjectMapState* ObjectVolumeStateGetMapState(ObjectVolumeState*)’:
layer2/ObjectVolume.cpp:74:33: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
74 | "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName
| ^~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer2/ObjectVolume.cpp:20:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 46 and 301 bytes into a destination of size 255
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/ov_utility.cpp -o build/temp.linux-armhf-3.9/ov/src/ov_utility.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveCopy(PyMOLGlobals*, const char*, const char*, int)’:
layer3/Executive.cpp:9799:25: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
9799 | " Executive: object %s created.\n", oDst->Name ENDFB(G);
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9798:3: note: in expansion of macro ‘PRINTFB’
9798 | PRINTFB(G, FB_Executive, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp: In function ‘void ExecutiveSymExp(PyMOLGlobals*, const char*, const char*, const char*, float, int, int)’:
layer3/Executive.cpp:14181:39: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 238 [-Wformat-truncation=]
14181 | "new_name before: %s\n", new_name ENDFB(G);
| ^~ ~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 19 and 1042 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:14180:19: note: in expansion of macro ‘PRINTFB’
14180 | PRINTFB(G, FB_Executive, FB_Blather)
| ^~~~~~~
layer3/Executive.cpp:14184:41: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 236 [-Wformat-truncation=]
14184 | "Making new object: %s from name=%s, a=%d, x=%d, y=%d, z=%d\n",
| ^~
14185 | new_name, name, (int)a, x, y, z ENDFB(G);
| ~~~~~~~~
layer3/Executive.cpp:14184:21: note: directive argument in the range [-1, 1]
14184 | "Making new object: %s from name=%s, a=%d, x=%d, y=%d, z=%d\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:14184:21: note: directive argument in the range [-1, 1]
layer3/Executive.cpp:14184:21: note: directive argument in the range [-1, 1]
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: ‘snprintf’ output 52 or more bytes (assuming 1078) into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:14183:19: note: in expansion of macro ‘PRINTFB’
14183 | PRINTFB(G, FB_Executive, FB_Blather)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepAngle.cpp -o build/temp.linux-armhf-3.9/layer2/RepAngle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/Executive.cpp: In member function ‘virtual int CExecutive::drag(int, int, int)’:
layer3/Executive.cpp:15534:55: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=]
15534 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
| ^~
15535 | order_input, (location == -2) ? "upper" : "current");
| ~~~~~~~~~~~
layer3/Executive.cpp:15534:26: note: ‘sprintf’ output between 32 and 1057 bytes into a destination of size 1024
15534 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
15535 | order_input, (location == -2) ? "upper" : "current");
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveSetName(PyMOLGlobals*, const char*, const char*)’:
layer3/Executive.cpp:3623:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 222 [-Wformat-truncation=]
3623 | " Warning: Invalid characters in '%s' have been replaced or stripped\n",
| ^~
3624 | name ENDFB(G);
| ~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 67 and 322 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:3622:5: note: in expansion of macro ‘PRINTFB’
3622 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepCartoon.cpp -o build/temp.linux-armhf-3.9/layer2/RepCartoon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/Selector.cpp: In function ‘int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’:
layer3/Selector.cpp:1830:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=]
1830 | " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n",
| ^~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/10/cstdio:42,
from /usr/include/c++/10/ext/string_conversions.h:43,
from /usr/include/c++/10/bits/basic_string.h:6545,
from /usr/include/c++/10/string:55,
from layer3/Selector.cpp:20:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 59 and 324 bytes into a destination of size 255
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/ExecutivePython.cpp -o build/temp.linux-armhf-3.9/layer3/ExecutivePython.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/MaeExportHelpers.cpp -o build/temp.linux-armhf-3.9/layer3/MaeExportHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepCylBond.cpp -o build/temp.linux-armhf-3.9/layer2/RepCylBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/MoleculeExporter.cpp -o build/temp.linux-armhf-3.9/layer3/MoleculeExporter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/SelectorTmp.cpp -o build/temp.linux-armhf-3.9/layer3/SelectorTmp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDihedral.cpp -o build/temp.linux-armhf-3.9/layer2/RepDihedral.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer4/Cmd.cpp -o build/temp.linux-armhf-3.9/layer4/Cmd.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/MovieScene.cpp -o build/temp.linux-armhf-3.9/layer3/MovieScene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from /usr/include/c++/10/vector:72,
from layer0/MemoryDebug.h:21,
from layer4/Cmd.cpp:52:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* CmdCifGetArray(PyObject*, PyObject*)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/PlugIOManager.cpp -o build/temp.linux-armhf-3.9/layer3/PlugIOManager.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer4/Menu.cpp -o build/temp.linux-armhf-3.9/layer4/Menu.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer4/PopUp.cpp -o build/temp.linux-armhf-3.9/layer4/PopUp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/PlugIOManager.cpp: In function ‘CObject* PlugIOManagerLoad(PyMOLGlobals*, CObject**, const char*, int, int, const char*, int)’:
layer3/PlugIOManager.cpp:939:65: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=]
939 | " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G);
| ^~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer3/PlugIOManager.cpp:20:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 58 and 313 bytes into a destination of size 255
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/RingFinder.cpp -o build/temp.linux-armhf-3.9/layer3/RingFinder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer5/PyMOL.cpp -o build/temp.linux-armhf-3.9/layer5/PyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer5/PyMOL.cpp: In function ‘void init_python(int, char**)’:
layer5/PyMOL.cpp:1798:22: warning: ‘void PyEval_InitThreads()’ is deprecated [-Wdeprecated-declarations]
1798 | PyEval_InitThreads();
| ^
In file included from /usr/include/python3.9/Python.h:145,
from layer0/os_python.h:32,
from layer5/PyMOL.cpp:17:
/usr/include/python3.9/ceval.h:130:37: note: declared here
130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void);
| ^~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer5/TestPyMOL.cpp -o build/temp.linux-armhf-3.9/layer5/TestPyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer5/main.cpp -o build/temp.linux-armhf-3.9/layer5/main.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-armhf-3.9/modules/cealign/src/ccealignmodule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVContext.cpp -o build/temp.linux-armhf-3.9/ov/src/OVContext.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVHeap.cpp -o build/temp.linux-armhf-3.9/ov/src/OVHeap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVHeapArray.cpp -o build/temp.linux-armhf-3.9/ov/src/OVHeapArray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVLexicon.cpp -o build/temp.linux-armhf-3.9/ov/src/OVLexicon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/build/generated/ShaderText.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-armhf-3.9/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-armhf-3.9/layer0/Block.o build/temp.linux-armhf-3.9/layer0/Crystal.o build/temp.linux-armhf-3.9/layer0/Deferred.o build/temp.linux-armhf-3.9/layer0/Err.o build/temp.linux-armhf-3.9/layer0/Feedback.o build/temp.linux-armhf-3.9/layer0/Field.o build/temp.linux-armhf-3.9/layer0/File.o build/temp.linux-armhf-3.9/layer0/GenericBuffer.o build/temp.linux-armhf-3.9/layer0/GraphicsUtil.o build/temp.linux-armhf-3.9/layer0/Isosurf.o build/temp.linux-armhf-3.9/layer0/Map.o build/temp.linux-armhf-3.9/layer0/Match.o build/temp.linux-armhf-3.9/layer0/Matrix.o build/temp.linux-armhf-3.9/layer0/MemoryDebug.o build/temp.linux-armhf-3.9/layer0/MyPNG.o build/temp.linux-armhf-3.9/layer0/Parse.o build/temp.linux-armhf-3.9/layer0/Pixmap.o build/temp.linux-armhf-3.9/layer0/PostProcess.o build/temp.linux-armhf-3.9/layer0/ShaderMgr.o build/temp.linux-armhf-3.9/layer0/ShaderPrg.o build/temp.linux-armhf-3.9/layer0/Sphere.o build/temp.linux-armhf-3.9/layer0/Tetsurf.o build/temp.linux-armhf-3.9/layer0/Texture.o build/temp.linux-armhf-3.9/layer0/Tracker.o build/temp.linux-armhf-3.9/layer0/Triangle.o build/temp.linux-armhf-3.9/layer0/Util.o build/temp.linux-armhf-3.9/layer0/Util2.o build/temp.linux-armhf-3.9/layer0/Vector.o build/temp.linux-armhf-3.9/layer0/Word.o build/temp.linux-armhf-3.9/layer0/os_gl.o build/temp.linux-armhf-3.9/layer1/Basis.o build/temp.linux-armhf-3.9/layer1/ButMode.o build/temp.linux-armhf-3.9/layer1/CGO.o build/temp.linux-armhf-3.9/layer1/COLLADA.o build/temp.linux-armhf-3.9/layer1/Character.o build/temp.linux-armhf-3.9/layer1/Color.o build/temp.linux-armhf-3.9/layer1/Control.o build/temp.linux-armhf-3.9/layer1/Extrude.o build/temp.linux-armhf-3.9/layer1/Font.o build/temp.linux-armhf-3.9/layer1/FontGLUT.o build/temp.linux-armhf-3.9/layer1/FontGLUT8x13.o build/temp.linux-armhf-3.9/layer1/FontGLUT9x15.o build/temp.linux-armhf-3.9/layer1/FontGLUTHel10.o build/temp.linux-armhf-3.9/layer1/FontGLUTHel12.o build/temp.linux-armhf-3.9/layer1/FontGLUTHel18.o build/temp.linux-armhf-3.9/layer1/FontType.o build/temp.linux-armhf-3.9/layer1/Movie.o build/temp.linux-armhf-3.9/layer1/Ortho.o build/temp.linux-armhf-3.9/layer1/P.o build/temp.linux-armhf-3.9/layer1/PConv.o build/temp.linux-armhf-3.9/layer1/Picking.o build/temp.linux-armhf-3.9/layer1/Pop.o build/temp.linux-armhf-3.9/layer1/PyMOLObject.o build/temp.linux-armhf-3.9/layer1/Ray.o build/temp.linux-armhf-3.9/layer1/Rep.o build/temp.linux-armhf-3.9/layer1/Scene.o build/temp.linux-armhf-3.9/layer1/ScenePicking.o build/temp.linux-armhf-3.9/layer1/SceneRay.o build/temp.linux-armhf-3.9/layer1/SceneRender.o build/temp.linux-armhf-3.9/layer1/ScrollBar.o build/temp.linux-armhf-3.9/layer1/Seq.o build/temp.linux-armhf-3.9/layer1/Setting.o build/temp.linux-armhf-3.9/layer1/Shaker.o build/temp.linux-armhf-3.9/layer1/Symmetry.o build/temp.linux-armhf-3.9/layer1/Text.o build/temp.linux-armhf-3.9/layer1/TypeFace.o build/temp.linux-armhf-3.9/layer1/View.o build/temp.linux-armhf-3.9/layer1/Wizard.o build/temp.linux-armhf-3.9/layer2/AssemblyHelpers.o build/temp.linux-armhf-3.9/layer2/AtomInfo.o build/temp.linux-armhf-3.9/layer2/AtomInfoHistory.o build/temp.linux-armhf-3.9/layer2/BondTypeHistory.o build/temp.linux-armhf-3.9/layer2/CifFile.o build/temp.linux-armhf-3.9/layer2/CifMoleculeReader.o build/temp.linux-armhf-3.9/layer2/CoordSet.o build/temp.linux-armhf-3.9/layer2/DistSet.o build/temp.linux-armhf-3.9/layer2/GadgetSet.o build/temp.linux-armhf-3.9/layer2/HydrogenAdder.o build/temp.linux-armhf-3.9/layer2/MmodTyping.o build/temp.linux-armhf-3.9/layer2/MmtfMoleculeReader.o build/temp.linux-armhf-3.9/layer2/Mol2Typing.o build/temp.linux-armhf-3.9/layer2/MolV3000.o build/temp.linux-armhf-3.9/layer2/ObjectAlignment.o build/temp.linux-armhf-3.9/layer2/ObjectCGO.o build/temp.linux-armhf-3.9/layer2/ObjectCallback.o build/temp.linux-armhf-3.9/layer2/ObjectDist.o build/temp.linux-armhf-3.9/layer2/ObjectGadget.o build/temp.linux-armhf-3.9/layer2/ObjectGadgetRamp.o build/temp.linux-armhf-3.9/layer2/ObjectGroup.o build/temp.linux-armhf-3.9/layer2/ObjectMap.o build/temp.linux-armhf-3.9/layer2/ObjectMesh.o build/temp.linux-armhf-3.9/layer2/ObjectMolecule.o build/temp.linux-armhf-3.9/layer2/ObjectMolecule2.o build/temp.linux-armhf-3.9/layer2/ObjectSlice.o build/temp.linux-armhf-3.9/layer2/ObjectSurface.o build/temp.linux-armhf-3.9/layer2/ObjectVolume.o build/temp.linux-armhf-3.9/layer2/RepAngle.o build/temp.linux-armhf-3.9/layer2/RepCartoon.o build/temp.linux-armhf-3.9/layer2/RepCylBond.o build/temp.linux-armhf-3.9/layer2/RepDihedral.o build/temp.linux-armhf-3.9/layer2/RepDistDash.o build/temp.linux-armhf-3.9/layer2/RepDistLabel.o build/temp.linux-armhf-3.9/layer2/RepDot.o build/temp.linux-armhf-3.9/layer2/RepEllipsoid.o build/temp.linux-armhf-3.9/layer2/RepLabel.o build/temp.linux-armhf-3.9/layer2/RepMesh.o build/temp.linux-armhf-3.9/layer2/RepNonbonded.o build/temp.linux-armhf-3.9/layer2/RepNonbondedSphere.o build/temp.linux-armhf-3.9/layer2/RepRibbon.o build/temp.linux-armhf-3.9/layer2/RepSphere.o build/temp.linux-armhf-3.9/layer2/RepSphereGenerate.o build/temp.linux-armhf-3.9/layer2/RepSphereImmediate.o build/temp.linux-armhf-3.9/layer2/RepSurface.o build/temp.linux-armhf-3.9/layer2/RepWireBond.o build/temp.linux-armhf-3.9/layer2/Sculpt.o build/temp.linux-armhf-3.9/layer2/SculptCache.o build/temp.linux-armhf-3.9/layer2/SideChainHelper.o build/temp.linux-armhf-3.9/layer2/VFont.o build/temp.linux-armhf-3.9/layer3/AtomIterators.o build/temp.linux-armhf-3.9/layer3/CifDataValueFormatter.o build/temp.linux-armhf-3.9/layer3/Editor.o build/temp.linux-armhf-3.9/layer3/Executive.o build/temp.linux-armhf-3.9/layer3/ExecutivePython.o build/temp.linux-armhf-3.9/layer3/MaeExportHelpers.o build/temp.linux-armhf-3.9/layer3/MoleculeExporter.o build/temp.linux-armhf-3.9/layer3/MovieScene.o build/temp.linux-armhf-3.9/layer3/PlugIOManager.o build/temp.linux-armhf-3.9/layer3/RingFinder.o build/temp.linux-armhf-3.9/layer3/Seeker.o build/temp.linux-armhf-3.9/layer3/Selector.o build/temp.linux-armhf-3.9/layer3/SelectorTmp.o build/temp.linux-armhf-3.9/layer4/Cmd.o build/temp.linux-armhf-3.9/layer4/Menu.o build/temp.linux-armhf-3.9/layer4/PopUp.o build/temp.linux-armhf-3.9/layer5/PyMOL.o build/temp.linux-armhf-3.9/layer5/TestPyMOL.o build/temp.linux-armhf-3.9/layer5/main.o build/temp.linux-armhf-3.9/modules/cealign/src/ccealignmodule.o build/temp.linux-armhf-3.9/ov/src/OVContext.o build/temp.linux-armhf-3.9/ov/src/OVHeap.o build/temp.linux-armhf-3.9/ov/src/OVHeapArray.o build/temp.linux-armhf-3.9/ov/src/OVLexicon.o build/temp.linux-armhf-3.9/ov/src/OVOneToAny.o build/temp.linux-armhf-3.9/ov/src/OVOneToOne.o build/temp.linux-armhf-3.9/ov/src/OVRandom.o build/temp.linux-armhf-3.9/ov/src/ov_utility.o -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/_cmd.cpython-39-arm-linux-gnueabihf.so
building 'chempy.champ._champ' extension
creating build/temp.linux-armhf-3.9/contrib/champ
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/champ.c -o build/temp.linux-armhf-3.9/contrib/champ/champ.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/champ_module.c -o build/temp.linux-armhf-3.9/contrib/champ/champ_module.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/chiral.c -o build/temp.linux-armhf-3.9/contrib/champ/chiral.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/err2.c -o build/temp.linux-armhf-3.9/contrib/champ/err2.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/feedback2.c -o build/temp.linux-armhf-3.9/contrib/champ/feedback2.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/list.c -o build/temp.linux-armhf-3.9/contrib/champ/list.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/os_memory.c -o build/temp.linux-armhf-3.9/contrib/champ/os_memory.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/sort.c -o build/temp.linux-armhf-3.9/contrib/champ/sort.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/strblock.c -o build/temp.linux-armhf-3.9/contrib/champ/strblock.o
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/vla.c -o build/temp.linux-armhf-3.9/contrib/champ/vla.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/contrib/champ/champ.o build/temp.linux-armhf-3.9/contrib/champ/champ_module.o build/temp.linux-armhf-3.9/contrib/champ/chiral.o build/temp.linux-armhf-3.9/contrib/champ/err2.o build/temp.linux-armhf-3.9/contrib/champ/feedback2.o build/temp.linux-armhf-3.9/contrib/champ/list.o build/temp.linux-armhf-3.9/contrib/champ/os_memory.o build/temp.linux-armhf-3.9/contrib/champ/sort.o build/temp.linux-armhf-3.9/contrib/champ/strblock.o build/temp.linux-armhf-3.9/contrib/champ/vla.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/champ/_champ.cpython-39-arm-linux-gnueabihf.so
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
chmod +x test/pymol-test
PYBUILD_SYSTEM="custom" \
PYBUILD_BEFORE_TEST="cp -r {dir}/test {build_dir}" \
PYBUILD_AFTER_TEST="rm -rf {build_dir}/test" \
PYBUILD_TEST_ARGS="cd {build_dir}/test; PYMOL_PATH={build_dir} python{version} run" \
dh_auto_test
I: pybuild pybuild:284: cp -r /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build
I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/test; PYMOL_PATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build python3.9 run
run_tests: C0001quit...
run_tests: C0001quit.log DIFFERS over about 1 lines.
run_tests: C0010hello...
run_tests: C0010hello.log DIFFERS over about 1 lines.
run_tests: C0020pdb...
run_tests: C0020pdb.log DIFFERS over about 4 lines.
run_tests: C0020pdb.pdb is missing.
run_tests: C0021pdbstr...
run_tests: C0021pdbstr.log DIFFERS over about 3 lines.
run_tests: C0025mol...
run_tests: C0025mol.log DIFFERS over about 3 lines.
run_tests: C0026sdf...
run_tests: C0026sdf.log DIFFERS over about 17 lines.
run_tests: C0027mol2...
run_tests: C0027mol2.log DIFFERS over about 36 lines.
run_tests: C0030pkl...
run_tests: C0030pkl.log DIFFERS over about 4 lines.
run_tests: C0030pkl.pdb is missing.
run_tests: C0050multi...
run_tests: C0050multi.log DIFFERS over about 4 lines.
run_tests: C0060delete...
run_tests: C0060delete.log DIFFERS over about 19 lines.
run_tests: C0070rep...
run_tests: C0070rep.log DIFFERS over about 9 lines.
run_tests: C0080create...
run_tests: C0080create.1.pdb is missing.
run_tests: C0080create.2.pdb is missing.
run_tests: C0080create.log DIFFERS over about 61 lines.
run_tests: C0100select...
run_tests: C0100select.log DIFFERS over about 90 lines.
run_tests: C0105names...
run_tests: C0105names.log DIFFERS over about 27 lines.
run_tests: C0106order...
run_tests: C0106order.log DIFFERS over about 49 lines.
run_tests: C0140iterate...
run_tests: C0140iterate.log DIFFERS over about 23 lines.
run_tests: C0150alter...
run_tests: C0150alter.1.pdb is missing.
run_tests: C0150alter.log DIFFERS over about 11 lines.
run_tests: C0160get...
run_tests: C0160get.log DIFFERS over about 42 lines.
run_tests: C0170scene...
run_tests: C0170scene.log DIFFERS over about 125 lines.
run_tests: C0180embed...
run_tests: C0180embed.log DIFFERS over about 45 lines.
run_tests: C0181embed...
run_tests: C0181embed.log DIFFERS over about 10 lines.
run_tests: C0200feedback...
run_tests: C0200feedback.log DIFFERS over about 127 lines.
run_tests: C0201extend...
run_tests: C0201extend.log DIFFERS over about 11 lines.
run_tests: C0202help_python...
run_tests: C0202help_python.log DIFFERS over about 50 lines.
run_tests: C0300session...
run_tests: C0300session.log DIFFERS over about 14 lines.
run_tests: C0500misc...
run_tests: C0500misc.log DIFFERS over about 130 lines.
run_tests: C0550pseudo...
run_tests: C0550pseudo.log DIFFERS over about 36 lines.
run_tests: C0600util...
run_tests: C0600util.log DIFFERS over about 27 lines.
run_tests: C0700odd...
run_tests: C0700odd.1.pdb is missing.
run_tests: C0700odd.2.pdb is missing.
run_tests: C0700odd.3.pdb is missing.
run_tests: C0700odd.4.pdb is missing.
run_tests: C0700odd.5.pdb is missing.
run_tests: C0700odd.6.pdb is missing.
run_tests: C0700odd.7.pdb is missing.
run_tests: C0700odd.8.pdb is missing.
run_tests: C0700odd.9.pdb is missing.
run_tests: C0700odd.A.pdb is missing.
run_tests: C0700odd.B.pdb is missing.
run_tests: C0700odd.C.pdb is missing.
run_tests: C0700odd.D.pdb is missing.
run_tests: C0700odd.E.pdb is missing.
run_tests: C0700odd.F.pdb is missing.
run_tests: C0700odd.log DIFFERS over about 204 lines.
run_tests: C0740multipdb...
run_tests: C0740multipdb.log DIFFERS over about 45 lines.
run_tests: C0800matrices...
run_tests: C0800matrices.log DIFFERS over about 141 lines.
run_tests: C1000viewing...
run_tests: C1000viewing.log DIFFERS over about 264 lines.
run_tests: C1010helping...
run_tests: C1010helping.log DIFFERS over about 27 lines.
run_tests: C1020querying...
run_tests: C1020querying.log DIFFERS over about 123 lines.
run_tests: C1030selecting...
run_tests: C1030selecting.log DIFFERS over about 63 lines.
run_tests: C1035wildcards...
run_tests: C1035wildcards.log DIFFERS over about 53 lines.
run_tests: C1040editing...
run_tests: C1040editing.log DIFFERS over about 260 lines.
run_tests: C1050fitting...
run_tests: C1050fitting.log DIFFERS over about 77 lines.
run_tests: C1060controlling...
run_tests: C1060controlling.log DIFFERS over about 7 lines.
run_tests: C1070exporting...
run_tests: C1070exporting.log DIFFERS over about 27 lines.
run_tests: C1080isomore...
run_tests: C1080isomore.log DIFFERS over about 142 lines.
run_tests: C1090coulomb...
run_tests: C1090coulomb.log DIFFERS over about 23 lines.
run_tests: C1095slice...
run_tests: C1095slice.log DIFFERS over about 33 lines.
run_tests: C1100do...
run_tests: C1100do.log DIFFERS over about 40 lines.
run_tests: C1110matrix_mode...
run_tests: C1110matrix_mode.log DIFFERS over about 127 lines.
run_tests: C1200matrix_maps...
run_tests: C1200matrix_maps.log DIFFERS over about 60 lines.
run_tests: C1300extras...
run_tests: C1300extras.log DIFFERS over about 38 lines.
run_tests: C2000returns...
run_tests: C2000returns.log DIFFERS over about 121 lines.
I: pybuild pybuild:310: rm -rf /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/test
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python3 --buildsystem pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-pymol
running install
running build
running build_py
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-pymol
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/arc.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/bond_amber.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/bond_mmff.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/bonds.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/brick.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/cc1.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/charge.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/cif.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/cpv.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/dictdb.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/gamess1.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/gms.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/hetatm.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/io.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/lst.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/mae.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/map.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/mass.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/mmd.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/models.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/mol.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/mol2.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/neighbor.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/pdb.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/pkl.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/place.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/protein.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/protein_amber.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/protein_amber99.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/protein_mmff.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/protein_residues.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/sdf.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/solvate.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/water_amber.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/water_residues.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/xyz.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/commands.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/realtime.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/state.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/util.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/champ/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/champ/amber99.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/champ/assign.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/champ/formal_charges.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/champ/_champ.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fast
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/fast/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fast
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fragments
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/fragments/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fragments
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf/io.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/amber.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/keyword.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/realtime.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/state.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/TextEditor.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/advanced_settings_gui.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/builder.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/file_dialogs.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/keymapping.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/mimic_pmg_tk.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/mimic_tk.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/properties_dialog.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/pymol_gl_widget.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/pymol_qt_gui.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/volume.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/askpartial.ui -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/colors.ui -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/fetch.ui -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_aln.ui -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_mae.ui -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_map.ui -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_mtz.ui -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_traj.ui -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/movieexport.ui -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/pluginitem.ui -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/pluginmanager.ui -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/png.ui -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/props.ui -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/render.ui -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/save_molecule.ui -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/save_object.ui -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/pml.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/pmlparser.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/python.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/ColorEditor.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/Demo.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/PMGApp.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/PyMOLMapLoad.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/SetEditor.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/Setting.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/TextEditor.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/volume.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/demo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/demo/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/demo
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal/ModalWindow.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal/builder.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/startup
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/startup
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup/apbs_tools.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/startup
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/__main__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/_gui.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/api.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/callback.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/cgo.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/checking.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/cmd.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/colorprinting.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/colorramping.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/commanding.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/completing.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/computing.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/constants.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/constants_palette.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/controlling.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/creating.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/diagnosing.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/editing.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/editor.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/experimenting.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/exporting.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/externing.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/feedingback.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/fitting.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/gui.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/headering.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/helping.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/importing.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/internal.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/invocation.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/keyboard.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/keywords.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/lazyio.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/locking.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/menu.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/monitoring.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/morphing.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/movie.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/moving.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/parser.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/parsing.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/preset.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/pymolhttpd.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/querying.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/rpc.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/selecting.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/selector.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/seqalign.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/setting.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/shortcut.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/util.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/vfont.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/viewing.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizarding.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/xray.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/xwin.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/povray.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/Qt/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/Qt/utils.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/contrib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/contrib/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/contrib
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/gl
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/gl/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/gl
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/glu
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/glu/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/glu
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/glut
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/glut/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/glut
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/installation.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/legacysupport.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/managergui.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/managergui_qt.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/repository.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/stereochemistry
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/stereochemistry/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/stereochemistry
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/annotation.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/appearance.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/benchmark.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/box.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/charge.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/cleanup.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/command.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/demo.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/density.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/distance.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/dragging.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/fedora.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/filter.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/label.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/measurement.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/message.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/mutagenesis.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/nucmutagenesis.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/openvr.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/pair_fit.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/pseudoatom.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/renaming.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/sculpting.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/security.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/stereodemo.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/toggle.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol/_cmd.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol2/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pymol/build/pymol2/cmd2.py -> /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/arc.py to arc.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bond_amber.py to bond_amber.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bond_mmff.py to bond_mmff.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bonds.py to bonds.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/brick.py to brick.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/cc1.py to cc1.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/charge.py to charge.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/cif.py to cif.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/cpv.py to cpv.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/dictdb.py to dictdb.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/gamess1.py to gamess1.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/gms.py to gms.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/hetatm.py to hetatm.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/io.py to io.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/lst.py to lst.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mae.py to mae.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/map.py to map.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mass.py to mass.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmd.py to mmd.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/models.py to models.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mol.py to mol.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mol2.py to mol2.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/neighbor.py to neighbor.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/pdb.py to pdb.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/pkl.py to pkl.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/place.py to place.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein.py to protein.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_amber.py to protein_amber.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_amber99.py to protein_amber99.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_mmff.py to protein_mmff.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_residues.py to protein_residues.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/sdf.py to sdf.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/solvate.py to solvate.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/water_amber.py to water_amber.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/water_residues.py to water_residues.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/xyz.py to xyz.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/commands.py to commands.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/realtime.py to realtime.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/state.py to state.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/util.py to util.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/amber99.py to amber99.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/assign.py to assign.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/formal_charges.py to formal_charges.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fast/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fragments/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf/io.py to io.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/amber.py to amber.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/keyword.py to keyword.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/realtime.py to realtime.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/state.py to state.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/TextEditor.py to TextEditor.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/builder.py to builder.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/keymapping.py to keymapping.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/mimic_tk.py to mimic_tk.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/volume.py to volume.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax/pml.py to pml.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax/pmlparser.py to pmlparser.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax/python.py to python.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/ColorEditor.py to ColorEditor.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/Demo.py to Demo.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/PMGApp.py to PMGApp.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/SetEditor.py to SetEditor.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/Setting.py to Setting.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/TextEditor.py to TextEditor.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/volume.py to volume.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal/builder.py to builder.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/startup/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/__main__.py to __main__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/_gui.py to _gui.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/api.py to api.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/callback.py to callback.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/cgo.py to cgo.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/checking.py to checking.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/cmd.py to cmd.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/colorprinting.py to colorprinting.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/colorramping.py to colorramping.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/commanding.py to commanding.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/completing.py to completing.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/computing.py to computing.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/constants.py to constants.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/constants_palette.py to constants_palette.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/controlling.py to controlling.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/creating.py to creating.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/diagnosing.py to diagnosing.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/editing.py to editing.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/editor.py to editor.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/experimenting.py to experimenting.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/exporting.py to exporting.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/externing.py to externing.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/feedingback.py to feedingback.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/fitting.py to fitting.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/gui.py to gui.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/headering.py to headering.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/helping.py to helping.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/importing.py to importing.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/internal.py to internal.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/invocation.py to invocation.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/keyboard.py to keyboard.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/keywords.py to keywords.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/lazyio.py to lazyio.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/locking.py to locking.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/menu.py to menu.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/monitoring.py to monitoring.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/morphing.py to morphing.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/movie.py to movie.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/moving.py to moving.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/parser.py to parser.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/parsing.py to parsing.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/preset.py to preset.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/pymolhttpd.py to pymolhttpd.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/querying.py to querying.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/rpc.py to rpc.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/selecting.py to selecting.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/selector.py to selector.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/seqalign.py to seqalign.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/setting.py to setting.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/shortcut.py to shortcut.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/util.py to util.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/vfont.py to vfont.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/viewing.py to viewing.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizarding.py to wizarding.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/xray.py to xray.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/xwin.py to xwin.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/povray.py to povray.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt/utils.py to utils.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/contrib/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/gl/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/glu/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/glut/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/installation.py to installation.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/legacysupport.py to legacysupport.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/managergui.py to managergui.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/managergui_qt.py to managergui_qt.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/repository.py to repository.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/stereochemistry/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/annotation.py to annotation.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/appearance.py to appearance.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/benchmark.py to benchmark.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/box.py to box.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/charge.py to charge.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/cleanup.py to cleanup.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/command.py to command.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/demo.py to demo.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/density.py to density.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/distance.py to distance.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/dragging.py to dragging.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/fedora.py to fedora.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/filter.py to filter.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/label.py to label.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/measurement.py to measurement.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/message.py to message.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/mutagenesis.py to mutagenesis.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/openvr.py to openvr.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/pair_fit.py to pair_fit.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/pseudoatom.py to pseudoatom.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/renaming.py to renaming.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/sculpting.py to sculpting.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/security.py to security.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/stereodemo.py to stereodemo.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/toggle.py to toggle.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2/cmd2.py to cmd2.cpython-39.pyc
running install_egg_info
Writing /<<PKGBUILDDIR>>/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol-2.4.0.egg-info
creating /<<PKGBUILDDIR>>/debian/python3-pymol/usr/bin
debian/rules override_dh_install-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_numpy3
dh_install
rm -rf debian/python*pymol/usr/bin
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installexamples -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installinit -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_compress -Xpdb
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dwz: debian/python3-pymol/usr/lib/python3/dist-packages/pymol/_cmd.cpython-39-arm-linux-gnueabihf.so: DWARF compression not beneficial - old size 19574545 new size 19692942
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pymol-dbgsym' in '../python3-pymol-dbgsym_2.4.0+dfsg-2_armhf.deb'.
dpkg-deb: building package 'python3-pymol' in '../python3-pymol_2.4.0+dfsg-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> >../pymol_2.4.0+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-05-27T05:39:56Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
pymol_2.4.0+dfsg-2_armhf.changes:
---------------------------------
Format: 1.8
Date: Sat, 22 May 2021 13:26:27 +0200
Source: pymol
Binary: python3-pymol python3-pymol-dbgsym
Architecture: armhf
Version: 2.4.0+dfsg-2
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Michael Banck <mbanck@debian.org>
Description:
python3-pymol - Molecular Graphics System (Python 3 modules)
Closes: 987963
Changes:
pymol (2.4.0+dfsg-2) unstable; urgency=medium
.
* debian/tests/control: Add scenes2movie to list of skipped scripts (Closes:
#987963).
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Files:
9462a8103bdbe3d11e2918debaf2ca8a 11867 science optional pymol_2.4.0+dfsg-2_armhf.buildinfo
675c83f61a7b81eba417d539eca8c0c6 13738292 debug optional python3-pymol-dbgsym_2.4.0+dfsg-2_armhf.deb
72632cc55b49587dca3a93effecb6e62 3230352 python optional python3-pymol_2.4.0+dfsg-2_armhf.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: pymol
Binary: python3-pymol python3-pymol-dbgsym
Architecture: armhf
Version: 2.4.0+dfsg-2
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Thu, 27 May 2021 05:39:54 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.69-14),
automake (= 1:1.16.3-2),
autopoint (= 0.21-4),
autotools-dev (= 20180224.1+nmu1),
base-files (= 11+rpi1),
base-passwd (= 3.5.49),
bash (= 5.1-2),
binutils (= 2.35.2-2+rpi1),
binutils-arm-linux-gnueabihf (= 2.35.2-2+rpi1),
binutils-common (= 2.35.2-2+rpi1),
bsdextrautils (= 2.36.1-7),
bsdutils (= 1:2.36.1-7),
build-essential (= 12.9),
bzip2 (= 1.0.8-4),
coreutils (= 8.32-4),
cpp (= 4:10.2.1-1+rpi1),
cpp-10 (= 10.2.1-6+rpi1),
dash (= 0.5.11+git20200708+dd9ef66-5),
debconf (= 1.5.75),
debhelper (= 13.3.4),
debianutils (= 4.11.2),
dh-autoreconf (= 20),
dh-python (= 4.20201102+nmu1),
dh-strip-nondeterminism (= 1.11.0-1),
diffutils (= 1:3.7-5),
dpkg (= 1.20.9+rpi1),
dpkg-dev (= 1.20.9+rpi1),
dwz (= 0.13+20210201-1),
file (= 1:5.39-3),
findutils (= 4.8.0-1),
fontconfig (= 2.13.1-4.2),
fontconfig-config (= 2.13.1-4.2),
fonts-dejavu-core (= 2.37-2),
fonts-lmodern (= 2.004.5-6.1),
freeglut3 (= 2.8.1-6),
freeglut3-dev (= 2.8.1-6),
g++ (= 4:10.2.1-1+rpi1),
g++-10 (= 10.2.1-6+rpi1),
gcc (= 4:10.2.1-1+rpi1),
gcc-10 (= 10.2.1-6+rpi1),
gcc-10-base (= 10.2.1-6+rpi1),
gettext (= 0.21-4),
gettext-base (= 0.21-4),
grep (= 3.6-1),
groff-base (= 1.22.4-6),
gzip (= 1.10-4),
hdf5-helpers (= 1.10.6+repack-2),
hostname (= 3.23),
icu-devtools (= 67.1-6),
init-system-helpers (= 1.60),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.2.53-10),
libaec-dev (= 1.0.4-1),
libaec0 (= 1.0.4-1),
libarchive-zip-perl (= 1.68-1),
libasan6 (= 10.2.1-6+rpi1),
libatomic1 (= 10.2.1-6+rpi1),
libattr1 (= 1:2.4.48-6),
libaudit-common (= 1:3.0-2),
libaudit1 (= 1:3.0-2),
libavahi-client3 (= 0.8-5),
libavahi-common-data (= 0.8-5),
libavahi-common3 (= 0.8-5),
libbinutils (= 2.35.2-2+rpi1),
libblas3 (= 3.9.0-3),
libblkid1 (= 2.36.1-7),
libbrotli-dev (= 1.0.9-2+b1),
libbrotli1 (= 1.0.9-2+b1),
libbsd0 (= 0.11.3-1),
libbz2-1.0 (= 1.0.8-4),
libc-bin (= 2.31-11+rpi1),
libc-dev-bin (= 2.31-11+rpi1),
libc6 (= 2.31-11+rpi1),
libc6-dev (= 2.31-11+rpi1),
libcairo2 (= 1.16.0-5),
libcap-ng0 (= 0.7.9-2.2+b1),
libcc1-0 (= 10.2.1-6+rpi1),
libcom-err2 (= 1.46.2-1),
libcrypt-dev (= 1:4.4.18-2),
libcrypt1 (= 1:4.4.18-2),
libctf-nobfd0 (= 2.35.2-2+rpi1),
libctf0 (= 2.35.2-2+rpi1),
libcups2 (= 2.3.3op2-3),
libcurl3-gnutls (= 7.74.0-1.2),
libcurl4-gnutls-dev (= 7.74.0-1.2),
libdb5.3 (= 5.3.28+dfsg1-0.8),
libdbus-1-3 (= 1.12.20-2),
libdebconfclient0 (= 0.257),
libdebhelper-perl (= 13.3.4),
libdouble-conversion3 (= 3.1.5-6.1),
libdpkg-perl (= 1.20.9+rpi1),
libdrm-amdgpu1 (= 2.4.104-1+rpi1),
libdrm-common (= 2.4.104-1+rpi1),
libdrm-nouveau2 (= 2.4.104-1+rpi1),
libdrm-radeon1 (= 2.4.104-1+rpi1),
libdrm2 (= 2.4.104-1+rpi1),
libedit2 (= 3.1-20191231-2),
libegl-dev (= 1.3.2-1),
libegl-mesa0 (= 20.3.4-1+rpi1),
libegl1 (= 1.3.2-1),
libelf1 (= 0.183-1),
libevdev2 (= 1.11.0+dfsg-1+rpi1),
libexpat1 (= 2.2.10-2),
libexpat1-dev (= 2.2.10-2),
libffi7 (= 3.3-6),
libfile-stripnondeterminism-perl (= 1.11.0-1),
libfontconfig1 (= 2.13.1-4.2),
libfreetype-dev (= 2.10.4+dfsg-1),
libfreetype6 (= 2.10.4+dfsg-1),
libfreetype6-dev (= 2.10.4+dfsg-1),
libgbm1 (= 20.3.4-1+rpi1),
libgcc-10-dev (= 10.2.1-6+rpi1),
libgcc-s1 (= 10.2.1-6+rpi1),
libgcrypt20 (= 1.8.7-3),
libgdbm-compat4 (= 1.19-2),
libgdbm6 (= 1.19-2),
libgfortran5 (= 10.2.1-6+rpi1),
libgl-dev (= 1.3.2-1),
libgl1 (= 1.3.2-1),
libgl1-mesa-dev (= 20.3.4-1+rpi1),
libgl1-mesa-dri (= 20.3.4-1+rpi1),
libglapi-mesa (= 20.3.4-1+rpi1),
libgles-dev (= 1.3.2-1),
libgles1 (= 1.3.2-1),
libgles2 (= 1.3.2-1),
libglew-dev (= 2.1.0-4),
libglew2.1 (= 2.1.0-4),
libglib2.0-0 (= 2.66.8-1),
libglm-dev (= 0.9.9.8+ds-1),
libglu1-mesa (= 9.0.1-1),
libglu1-mesa-dev (= 9.0.1-1),
libglvnd-dev (= 1.3.2-1),
libglvnd0 (= 1.3.2-1),
libglx-dev (= 1.3.2-1),
libglx-mesa0 (= 20.3.4-1+rpi1),
libglx0 (= 1.3.2-1),
libgmp10 (= 2:6.2.1+dfsg-1),
libgnutls30 (= 3.7.1-3),
libgomp1 (= 10.2.1-6+rpi1),
libgpg-error0 (= 1.38-2),
libgraphite2-3 (= 1.3.14-1),
libgssapi-krb5-2 (= 1.18.3-5),
libgudev-1.0-0 (= 234-1),
libharfbuzz0b (= 2.7.4-1),
libhdf5-103-1 (= 1.10.6+repack-2),
libhdf5-cpp-103-1 (= 1.10.6+repack-2),
libhdf5-dev (= 1.10.6+repack-2),
libhdf5-fortran-102 (= 1.10.6+repack-2),
libhdf5-hl-100 (= 1.10.6+repack-2),
libhdf5-hl-cpp-100 (= 1.10.6+repack-2),
libhdf5-hl-fortran-100 (= 1.10.6+repack-2),
libhogweed6 (= 3.7.2-3),
libice-dev (= 2:1.0.10-1),
libice6 (= 2:1.0.10-1),
libicu-dev (= 67.1-6),
libicu67 (= 67.1-6),
libidn2-0 (= 2.3.0-5),
libinput-bin (= 1.16.4-3),
libinput10 (= 1.16.4-3),
libisl23 (= 0.23-1),
libjpeg-dev (= 1:2.0.6-4),
libjpeg62-turbo (= 1:2.0.6-4),
libjpeg62-turbo-dev (= 1:2.0.6-4),
libjs-jquery (= 3.5.1+dfsg+~3.5.5-7),
libjs-sphinxdoc (= 3.4.3-2),
libjs-underscore (= 1.9.1~dfsg-3),
libk5crypto3 (= 1.18.3-5),
libkeyutils1 (= 1.6.1-2),
libkpathsea6 (= 2020.20200327.54578-7),
libkrb5-3 (= 1.18.3-5),
libkrb5support0 (= 1.18.3-5),
liblapack3 (= 3.9.0-3),
libldap-2.4-2 (= 2.4.57+dfsg-2),
libllvm11 (= 1:11.0.1-2+rpi1),
liblz4-1 (= 1.9.3-1+rpi1),
liblzma5 (= 5.2.5-2),
libmagic-mgc (= 1:5.39-3),
libmagic1 (= 1:5.39-3),
libmd0 (= 1.0.3-3),
libmd4c0 (= 0.4.7-2),
libmount1 (= 2.36.1-7),
libmpc3 (= 1.2.0-1),
libmpdec3 (= 2.5.1-1+rpi1),
libmpfr6 (= 4.1.0-3),
libmtdev1 (= 1.1.6-1),
libncursesw6 (= 6.2+20201114-2),
libnetcdf-dev (= 1:4.7.4-1),
libnetcdf18 (= 1:4.7.4-1),
libnettle8 (= 3.7.2-3),
libnghttp2-14 (= 1.43.0-1),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libopengl-dev (= 1.3.2-1),
libopengl0 (= 1.3.2-1),
libp11-kit0 (= 0.23.22-1),
libpam-modules (= 1.4.0-7),
libpam-modules-bin (= 1.4.0-7),
libpam-runtime (= 1.4.0-7),
libpam0g (= 1.4.0-7),
libpaper-utils (= 1.1.28),
libpaper1 (= 1.1.28),
libpcre2-16-0 (= 10.36-2),
libpcre2-8-0 (= 10.36-2),
libpcre3 (= 2:8.39-13),
libperl5.32 (= 5.32.1-4),
libpipeline1 (= 1.5.3-1),
libpixman-1-0 (= 0.40.0-1),
libpng-dev (= 1.6.37-3),
libpng16-16 (= 1.6.37-3),
libpsl5 (= 0.21.0-1.2),
libptexenc1 (= 2020.20200327.54578-7),
libpthread-stubs0-dev (= 0.4-1),
libpython3-all-dev (= 3.9.2-3),
libpython3-dev (= 3.9.2-3),
libpython3-stdlib (= 3.9.2-3),
libpython3.9 (= 3.9.2-1+rpi1),
libpython3.9-dev (= 3.9.2-1+rpi1),
libpython3.9-minimal (= 3.9.2-1+rpi1),
libpython3.9-stdlib (= 3.9.2-1+rpi1),
libqt5core5a (= 5.15.2+dfsg-5+rpi1),
libqt5dbus5 (= 5.15.2+dfsg-5+rpi1),
libqt5designer5 (= 5.15.2-5),
libqt5gui5 (= 5.15.2+dfsg-5+rpi1),
libqt5help5 (= 5.15.2-5),
libqt5network5 (= 5.15.2+dfsg-5+rpi1),
libqt5opengl5 (= 5.15.2+dfsg-5+rpi1),
libqt5printsupport5 (= 5.15.2+dfsg-5+rpi1),
libqt5sql5 (= 5.15.2+dfsg-5+rpi1),
libqt5test5 (= 5.15.2+dfsg-5+rpi1),
libqt5widgets5 (= 5.15.2+dfsg-5+rpi1),
libqt5xml5 (= 5.15.2+dfsg-5+rpi1),
libreadline8 (= 8.1-1),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
libsasl2-2 (= 2.1.27+dfsg-2.1),
libsasl2-modules-db (= 2.1.27+dfsg-2.1),
libseccomp2 (= 2.5.1-1+rpi1),
libselinux1 (= 3.1-3),
libsensors-config (= 1:3.6.0-7),
libsensors5 (= 1:3.6.0-7),
libsigsegv2 (= 2.13-1),
libsm-dev (= 2:1.2.3-1),
libsm6 (= 2:1.2.3-1),
libsmartcols1 (= 2.36.1-7),
libsqlite3-0 (= 3.34.1-3),
libssh2-1 (= 1.9.0-2),
libssl1.1 (= 1.1.1k-1),
libstdc++-10-dev (= 10.2.1-6+rpi1),
libstdc++6 (= 10.2.1-6+rpi1),
libsub-override-perl (= 0.09-2),
libsynctex2 (= 2020.20200327.54578-7),
libsystemd0 (= 247.3-5+rpi1),
libsz2 (= 1.0.4-1),
libtasn1-6 (= 4.16.0-2),
libteckit0 (= 2.5.10+ds1-3),
libtexlua53 (= 2020.20200327.54578-7),
libtexluajit2 (= 2020.20200327.54578-7),
libtinfo6 (= 6.2+20201114-2),
libtirpc-common (= 1.3.1-1),
libtirpc-dev (= 1.3.1-1),
libtirpc3 (= 1.3.1-1),
libtool (= 2.4.6-15),
libubsan1 (= 10.2.1-6+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 247.3-5+rpi1),
libunistring2 (= 0.9.10-4),
libuuid1 (= 2.36.1-7),
libvulkan1 (= 1.2.162.0-1),
libwacom-common (= 1.8-2),
libwacom2 (= 1.8-2),
libwayland-client0 (= 1.18.0-2~exp1.1),
libwayland-server0 (= 1.18.0-2~exp1.1),
libx11-6 (= 2:1.7.1-1),
libx11-data (= 2:1.7.1-1),
libx11-dev (= 2:1.7.1-1),
libx11-xcb1 (= 2:1.7.1-1),
libxau-dev (= 1:1.0.9-1),
libxau6 (= 1:1.0.9-1),
libxaw7 (= 2:1.0.13-1.1),
libxcb-dri2-0 (= 1.14-3),
libxcb-dri3-0 (= 1.14-3),
libxcb-glx0 (= 1.14-3),
libxcb-icccm4 (= 0.4.1-1.1),
libxcb-image0 (= 0.4.0-1+b3),
libxcb-keysyms1 (= 0.4.0-1+b2),
libxcb-present0 (= 1.14-3),
libxcb-randr0 (= 1.14-3),
libxcb-render-util0 (= 0.3.9-1+b1),
libxcb-render0 (= 1.14-3),
libxcb-shape0 (= 1.14-3),
libxcb-shm0 (= 1.14-3),
libxcb-sync1 (= 1.14-3),
libxcb-util1 (= 0.4.0-1),
libxcb-xfixes0 (= 1.14-3),
libxcb-xinerama0 (= 1.14-3),
libxcb-xinput0 (= 1.14-3),
libxcb-xkb1 (= 1.14-3),
libxcb1 (= 1.14-3),
libxcb1-dev (= 1.14-3),
libxdamage1 (= 1:1.1.5-2),
libxdmcp-dev (= 1:1.1.2-3),
libxdmcp6 (= 1:1.1.2-3),
libxext-dev (= 2:1.3.3-1.1),
libxext6 (= 2:1.3.3-1.1),
libxfixes3 (= 1:5.0.3-2),
libxi6 (= 2:1.7.10-1),
libxkbcommon-x11-0 (= 1.0.3-2),
libxkbcommon0 (= 1.0.3-2),
libxml2 (= 2.9.10+dfsg-6.6),
libxml2-dev (= 2.9.10+dfsg-6.6),
libxmu6 (= 2:1.1.2-2+b3),
libxpm4 (= 1:3.5.12-1),
libxrender1 (= 1:0.9.10-1),
libxshmfence1 (= 1.3-1),
libxt-dev (= 1:1.2.0-1),
libxt6 (= 1:1.2.0-1),
libxxf86vm1 (= 1:1.1.4-1+b2),
libz3-4 (= 4.8.10-1),
libzstd1 (= 1.4.8+dfsg-2.1+rpi1),
libzzip-0-13 (= 0.13.62-3.3),
linux-libc-dev (= 5.10.28-1+rpi1),
login (= 1:4.8.1-1),
lsb-base (= 11.1.0+rpi1),
m4 (= 1.4.18-5),
make (= 4.3-4.1),
man-db (= 2.9.4-2),
mawk (= 1.3.4.20200120-2),
media-types (= 4.0.0),
ncurses-base (= 6.2+20201114-2),
ncurses-bin (= 6.2+20201114-2),
patch (= 2.7.6-7),
perl (= 5.32.1-4),
perl-base (= 5.32.1-4),
perl-modules-5.32 (= 5.32.1-4),
po-debconf (= 1.0.21+nmu1),
python3 (= 3.9.2-3),
python3-all (= 3.9.2-3),
python3-all-dev (= 3.9.2-3),
python3-dev (= 3.9.2-3),
python3-distutils (= 3.9.2-1),
python3-lib2to3 (= 3.9.2-1),
python3-minimal (= 3.9.2-3),
python3-numpy (= 1:1.19.5-1),
python3-opengl (= 3.1.5+dfsg-1),
python3-pkg-resources (= 52.0.0-3),
python3-pyqt5 (= 5.15.2+dfsg-3),
python3-pyqt5.qtopengl (= 5.15.2+dfsg-3),
python3-pyqt5.sip (= 12.8.1-1+b1),
python3.9 (= 3.9.2-1+rpi1),
python3.9-dev (= 3.9.2-1+rpi1),
python3.9-minimal (= 3.9.2-1+rpi1),
readline-common (= 8.1-1),
sed (= 4.7-1),
sensible-utils (= 0.0.14),
shared-mime-info (= 2.0-1),
sysvinit-utils (= 2.96-7),
t1utils (= 1.41-4),
tar (= 1.34+dfsg-1),
tex-common (= 6.16),
texlive-base (= 2020.20210202-3),
texlive-binaries (= 2020.20200327.54578-7),
texlive-latex-base (= 2020.20210202-3),
tzdata (= 2021a-1),
ucf (= 3.0043),
util-linux (= 2.36.1-7),
x11-common (= 1:7.7+22),
x11proto-dev (= 2020.1-1),
x11proto-xext-dev (= 2020.1-1),
xdg-utils (= 1.1.3-4.1),
xkb-data (= 2.29-2),
xorg-sgml-doctools (= 1:1.11-1.1),
xtrans-dev (= 1.4.0-1),
xz-utils (= 5.2.5-2),
zlib1g (= 1:1.2.11.dfsg-2),
zlib1g-dev (= 1:1.2.11.dfsg-2)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1621682787"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-pymol-dbgsym_2.4.0+dfsg-2_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 13738292 bytes: control archive=648 bytes.
421 bytes, 12 lines control
305 bytes, 3 lines md5sums
Package: python3-pymol-dbgsym
Source: pymol
Version: 2.4.0+dfsg-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 13951
Depends: python3-pymol (= 2.4.0+dfsg-2)
Section: debug
Priority: optional
Description: debug symbols for python3-pymol
Build-Ids: 23fc5b96a22b2996381d42f659be5c1fb2361a2a df25ac31b66280ddff5d25bf57fc748ba14dbf05
drwxr-xr-x root/root 0 2021-05-22 11:26 ./
drwxr-xr-x root/root 0 2021-05-22 11:26 ./usr/
drwxr-xr-x root/root 0 2021-05-22 11:26 ./usr/lib/
drwxr-xr-x root/root 0 2021-05-22 11:26 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-05-22 11:26 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-05-22 11:26 ./usr/lib/debug/.build-id/23/
-rw-r--r-- root/root 14167532 2021-05-22 11:26 ./usr/lib/debug/.build-id/23/fc5b96a22b2996381d42f659be5c1fb2361a2a.debug
drwxr-xr-x root/root 0 2021-05-22 11:26 ./usr/lib/debug/.build-id/df/
-rw-r--r-- root/root 99604 2021-05-22 11:26 ./usr/lib/debug/.build-id/df/25ac31b66280ddff5d25bf57fc748ba14dbf05.debug
drwxr-xr-x root/root 0 2021-05-22 11:26 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2021-05-22 11:26 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 3264 2021-05-22 11:26 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-pymol.debug
drwxr-xr-x root/root 0 2021-05-22 11:26 ./usr/share/
drwxr-xr-x root/root 0 2021-05-22 11:26 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-05-22 11:26 ./usr/share/doc/python3-pymol-dbgsym -> python3-pymol
python3-pymol_2.4.0+dfsg-2_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 3230352 bytes: control archive=6732 bytes.
1325 bytes, 27 lines control
18099 bytes, 212 lines md5sums
251 bytes, 12 lines * postinst #!/bin/sh
400 bytes, 12 lines * prerm #!/bin/sh
Package: python3-pymol
Source: pymol
Version: 2.4.0+dfsg-2
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 11677
Depends: python3-numpy (>= 1:1.16.0~rc1), python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, python3-numpy-abi9, python3 (<< 3.10), python3 (>= 3.9~), python3:any, libc6 (>= 2.29), libfreetype6 (>= 2.2.1), libgcc-s1 (>= 3.5), libgl1, libglew2.1 (>= 1.12.0), libnetcdf18 (>= 3.6.1), libpng16-16 (>= 1.6.2-1), libstdc++6 (>= 5.2), libxml2 (>= 2.7.4), pymol-data (= 2.4.0+dfsg-2)
Breaks: pymol (<= 2.2.0-1)
Section: python
Priority: optional
Homepage: http://www.pymol.org
Description: Molecular Graphics System (Python 3 modules)
PyMOL is a molecular graphics system targeted at medium to large
biomolecules like proteins. It can generate high-quality publication-ready
molecular graphics images and animations.
.
Features include:
* Visualization of molecules, molecular trajectories and surfaces
of crystallography data or orbitals
* Molecular builder and sculptor
* Internal raytracer and movie generator
* Fully extensible and scriptable via a Python interface
.
File formats PyMOL can read include PDB, XYZ, CIF, MDL Molfile, ChemDraw,
CCP4 maps, XPLOR maps and Gaussian cube maps.
.
This package contains the Python 3 modules.
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 284284
Build-Time: 738
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 1136
Job: pymol_2.4.0+dfsg-2
Machine Architecture: armhf
Package: pymol
Package-Time: 1906
Source-Version: 2.4.0+dfsg-2
Space: 284284
Status: successful
Version: 2.4.0+dfsg-2
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Finished at 2021-05-27T05:39:56Z
Build needed 00:31:46, 284284k disk space