pscan-tfbs →
1.2.2-4 →
armhf → 2020-08-14 11:21:13
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| pscan-tfbs 1.2.2-4 (armhf) Fri, 14 Aug 2020 11:14:47 +0000 |
+==============================================================================+
Package: pscan-tfbs
Version: 1.2.2-4
Source Version: 1.2.2-4
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-84125f42-e618-4c7d-80fd-bdc0d0e3563d' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.8 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.8 MB in 25s (1012 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'pscan-tfbs' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/pscan-tfbs.git
Please use:
git clone https://salsa.debian.org/med-team/pscan-tfbs.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 52.2 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main pscan-tfbs 1.2.2-4 (dsc) [1993 B]
Get:2 http://172.17.0.1/private bullseye-staging/main pscan-tfbs 1.2.2-4 (tar) [42.9 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main pscan-tfbs 1.2.2-4 (diff) [7296 B]
Fetched 52.2 kB in 0s (353 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pscan-tfbs-dYuFrx/pscan-tfbs-1.2.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pscan-tfbs-dYuFrx' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-FTP1oD/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-FTP1oD/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-FTP1oD/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-FTP1oD/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-FTP1oD/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-FTP1oD/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-FTP1oD/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-FTP1oD/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2825 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-FTP1oD/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12517 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libgsl-dev
Filtered Build-Depends: debhelper-compat (= 13), libgsl-dev
dpkg-deb: building package 'sbuild-build-depends-pscan-tfbs-dummy' in '/<<BUILDDIR>>/resolver-FTP1oD/apt_archive/sbuild-build-depends-pscan-tfbs-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-pscan-tfbs-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-FTP1oD/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-FTP1oD/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-FTP1oD/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-FTP1oD/apt_archive ./ Sources [502 B]
Get:5 copy:/<<BUILDDIR>>/resolver-FTP1oD/apt_archive ./ Packages [577 B]
Fetched 2412 B in 1s (3087 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install pscan-tfbs build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev debhelper dh-autoreconf
dh-strip-nondeterminism dwz file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl25
libgslcblas0 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2
libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff gsl-ref-psdoc | gsl-doc-pdf
| gsl-doc-info | gsl-ref-html libtool-doc gfortran | fortran95-compiler
gcj-jdk m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev debhelper dh-autoreconf
dh-strip-nondeterminism dwz file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl25
libgslcblas0 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2
libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf
sbuild-build-depends-pscan-tfbs-dummy
0 upgraded, 35 newly installed, 0 to remove and 0 not upgraded.
Need to get 20.2 MB of archives.
After this operation, 76.3 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-FTP1oD/apt_archive ./ sbuild-build-depends-pscan-tfbs-dummy 0.invalid.0 [868 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-3 [801 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2 [187 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.180-1 [162 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.4-1 [1159 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-3 [8287 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5+b1 [593 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2 [1007 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libgslcblas0 armhf 2.6+dfsg-2 [79.5 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libgsl25 armhf 2.6+dfsg-2 [753 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libgsl-dev armhf 2.6+dfsg-2 [950 kB]
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Setting up libpipeline1:armhf (1.5.2-2) ...
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Setting up automake (1:1.16.2-3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-10) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
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Setting up dh-autoreconf (19) ...
Processing triggers for libc-bin (2.31-3+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35-1+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.1.0-6+rpi1 gcc-10_10.1.0-6+rpi1 libc6-dev_2.31-3+rpi1 libstdc++-10-dev_10.1.0-6+rpi1 libstdc++6_10.1.0-6+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.10 aptitude_0.8.13-1+b1 aptitude-common_0.8.13-1 autoconf_2.69-11.1 automake_1:1.16.2-3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-7 binutils_2.35-1+rpi1 binutils-arm-linux-gnueabihf_2.35-1+rpi1 binutils-common_2.35-1+rpi1 bsdextrautils_2.36-2 bsdutils_1:2.36-2 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.30-3 cpp_4:10.1.0-1+rpi1 cpp-10_10.1.0-6+rpi1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.36-2 file_1:5.38-5 findutils_4.7.0-1 g++_4:10.1.0-1+rpi1 g++-10_10.1.0-6+rpi1 gcc_4:10.1.0-1+rpi1 gcc-10_10.1.0-6+rpi1 gcc-10-base_10.1.0-6+rpi1 gcc-6-base_6.5.0-1+rpi3 gcc-7-base_7.5.0-6+rpi1 gcc-8-base_8.4.0-4+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libasan6_10.1.0-6+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.1.0-6+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.35-1+rpi1 libblkid1_2.36-2 libboost-iostreams1.71.0_1.71.0-6+b1 libbz2-1.0_1.0.8-4 libc-bin_2.31-3+rpi1 libc-dev-bin_2.31-3+rpi1 libc6_2.31-3+rpi1 libc6-dev_2.31-3+rpi1 libcap-ng0_0.7.9-2.2 libcc1-0_10.1.0-6+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.35-1+rpi1 libctf0_2.35-1+rpi1 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.253 libdebhelper-perl_13.2 libdpkg-perl_1.20.5+rpi1 libelf1_0.180-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.36-2 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.1.0-6+rpi1 libgcc-s1_10.1.0-6+rpi1 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.4-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.14-2+b1 libgomp1_10.1.0-6+rpi1 libgpg-error0_1.38-2 libgsl-dev_2.6+dfsg-2 libgsl25_2.6+dfsg-2 libgslcblas0_2.6+dfsg-2 libhogweed6_3.6-2 libicu67_67.1-3 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libksba8_1.4.0-2 libldap-2.4-2_2.4.50+dfsg-1+b1 libldap-common_2.4.50+dfsg-1 liblocale-gettext-perl_1.07-4 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-2 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncursesw6_6.2-1 libnettle8_3.6-2 libnpth0_1.6-2 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.2-2 libreadline8_8.0-4 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.2-1 libsigsegv2_2.12-2 libsmartcols1_2.36-2 libsqlite3-0_3.32.3-1 libss2_1.45.6-1 libstdc++-10-dev_10.1.0-6+rpi1 libstdc++6_10.1.0-6+rpi1 libsub-override-perl_0.09-2 libsystemd0_245.6-2+rpi1+b1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10 libtext-iconv-perl_1.7-7 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.1.0-6+rpi1 libuchardet0_0.0.7-1 libudev1_245.6-2+rpi1+b1 libunistring2_0.9.10-4 libuuid1_2.36-2 libxapian30_1.4.15-1 libxml2_2.9.10+dfsg-5+b1 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-2 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pscan-tfbs-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 util-linux_2.36-2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.mQy4osZ0/trustedkeys.kbx': General error
gpgv: Signature made Wed Aug 12 12:21:47 2020 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./pscan-tfbs_1.2.2-4.dsc
dpkg-source: info: extracting pscan-tfbs in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking pscan-tfbs_1.2.2.orig.tar.gz
dpkg-source: info: unpacking pscan-tfbs_1.2.2-4.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-84125f42-e618-4c7d-80fd-bdc0d0e3563d
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package pscan-tfbs
dpkg-buildpackage: info: source version 1.2.2-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_clean
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/pscan-tfbs.substvars debian/files
rm -fr -- debian/pscan-tfbs/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
rm -f pscan
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/pscan-tfbs.substvars debian/files
rm -fr -- debian/pscan-tfbs/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -flto pscan.cpp -o pscan -Wl,-z,relro -Wl,-z,now -Wl,-flto -lgslcblas -lgsl
pscan.cpp: In member function 'char query::comp_char(char)':
pscan.cpp:4877:1: warning: control reaches end of non-void function [-Wreturn-type]
4877 | }
| ^
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -a
dh_prep -a
rm -f -- debian/pscan-tfbs.substvars
rm -fr -- debian/.debhelper/generated/pscan-tfbs/ debian/pscan-tfbs/ debian/tmp/
dh_install -a
install -d debian/pscan-tfbs/usr/lib/debian-med/bin/
cp --reflink=auto -a ./pscan debian/pscan-tfbs/usr/lib/debian-med/bin//
install -d debian/.debhelper/generated/pscan-tfbs
dh_installdocs -a
install -d debian/pscan-tfbs/usr/share/doc/pscan-tfbs
cp --reflink=auto -a ./HELP.txt debian/pscan-tfbs/usr/share/doc/pscan-tfbs
cp --reflink=auto -a ./REFERENCE.txt debian/pscan-tfbs/usr/share/doc/pscan-tfbs
chmod -R u\+rw,go=rX debian/pscan-tfbs/usr/share/doc
install -p -m0644 debian/README.Debian debian/pscan-tfbs/usr/share/doc/pscan-tfbs/README.Debian
install -p -m0644 debian/copyright debian/pscan-tfbs/usr/share/doc/pscan-tfbs/copyright
dh_installchangelogs -a
install -p -m0644 debian/changelog debian/pscan-tfbs/usr/share/doc/pscan-tfbs/changelog.Debian
dh_installexamples -a
install -d debian/pscan-tfbs/usr/share/doc/pscan-tfbs/examples
cp --reflink=auto -a ./example_matrix_file.wil debian/pscan-tfbs/usr/share/doc/pscan-tfbs/examples
cp --reflink=auto -a ./debian/tests/sample.fasta debian/pscan-tfbs/usr/share/doc/pscan-tfbs/examples
dh_installman -a
install -d debian/pscan-tfbs/usr/share/man/man1/
install -p -m0644 ./debian/pscan-tfbs.1 debian/pscan-tfbs/usr/share/man/man1/pscan-tfbs.1
man-recode --to-code UTF-8 --suffix .dh-new debian/pscan-tfbs/usr/share/man/man1/pscan-tfbs.1
mv debian/pscan-tfbs/usr/share/man/man1/pscan-tfbs.1.dh-new debian/pscan-tfbs/usr/share/man/man1/pscan-tfbs.1
chmod 0644 -- debian/pscan-tfbs/usr/share/man/man1/pscan-tfbs.1
dh_perl -a
dh_link -a
install -d debian/pscan-tfbs/usr/lib/debian-med/share/man/man1
rm -f debian/pscan-tfbs/usr/lib/debian-med/share/man/man1/pscan.1.gz
ln -s ../../../../../share/man/man1/pscan-tfbs.1.gz debian/pscan-tfbs/usr/lib/debian-med/share/man/man1/pscan.1.gz
install -d debian/pscan-tfbs/usr/bin
rm -f debian/pscan-tfbs/usr/bin/pscan-tfbs
ln -s ../lib/debian-med/bin/pscan debian/pscan-tfbs/usr/bin/pscan-tfbs
dh_strip_nondeterminism -a
dh_compress -a
cd debian/pscan-tfbs
chmod a-x usr/share/doc/pscan-tfbs/HELP.txt usr/share/doc/pscan-tfbs/changelog.Debian usr/share/man/man1/pscan-tfbs.1
gzip -9nf usr/share/doc/pscan-tfbs/HELP.txt usr/share/doc/pscan-tfbs/changelog.Debian usr/share/man/man1/pscan-tfbs.1
cd '/<<PKGBUILDDIR>>'
dh_fixperms -a
find debian/pscan-tfbs ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/pscan-tfbs/usr/share/doc -type f -a -true -a ! -regex 'debian/pscan-tfbs/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/pscan-tfbs/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/pscan-tfbs/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/pscan-tfbs -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/pscan-tfbs/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
find debian/pscan-tfbs/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
dh_missing -a
dh_dwz -a -a
dwz -- debian/pscan-tfbs/usr/lib/debian-med/bin/pscan
dh_strip -a -a
install -d debian/.debhelper/pscan-tfbs/dbgsym-root/usr/lib/debug/.build-id/5c
objcopy --only-keep-debug --compress-debug-sections debian/pscan-tfbs/usr/lib/debian-med/bin/pscan debian/.debhelper/pscan-tfbs/dbgsym-root/usr/lib/debug/.build-id/5c/eb80f9f6db9524f72770cc9023cb85e9639666.debug
chmod 0644 -- debian/.debhelper/pscan-tfbs/dbgsym-root/usr/lib/debug/.build-id/5c/eb80f9f6db9524f72770cc9023cb85e9639666.debug
strip --remove-section=.comment --remove-section=.note debian/pscan-tfbs/usr/lib/debian-med/bin/pscan
objcopy --add-gnu-debuglink debian/.debhelper/pscan-tfbs/dbgsym-root/usr/lib/debug/.build-id/5c/eb80f9f6db9524f72770cc9023cb85e9639666.debug debian/pscan-tfbs/usr/lib/debian-med/bin/pscan
install -d debian/.debhelper/pscan-tfbs/dbgsym-root/usr/share/doc
ln -s pscan-tfbs debian/.debhelper/pscan-tfbs/dbgsym-root/usr/share/doc/pscan-tfbs-dbgsym
dh_makeshlibs -a -a
rm -f debian/pscan-tfbs/DEBIAN/shlibs
dh_shlibdeps -a -a
install -d debian/pscan-tfbs/DEBIAN
dpkg-shlibdeps -Tdebian/pscan-tfbs.substvars debian/pscan-tfbs/usr/lib/debian-med/bin/pscan
dpkg-shlibdeps: warning: debian/pscan-tfbs/usr/lib/debian-med/bin/pscan contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/pscan-tfbs/usr/lib/debian-med/bin/pscan was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
echo misc:Depends= >> debian/pscan-tfbs.substvars
echo misc:Pre-Depends= >> debian/pscan-tfbs.substvars
install -d debian/.debhelper/pscan-tfbs/dbgsym-root/DEBIAN
dpkg-gencontrol -ppscan-tfbs -ldebian/changelog -Tdebian/pscan-tfbs.substvars -Pdebian/.debhelper/pscan-tfbs/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -DPackage=pscan-tfbs-dbgsym "-DDepends=pscan-tfbs (= \${binary:Version})" "-DDescription=debug symbols for pscan-tfbs" -DBuild-Ids=5ceb80f9f6db9524f72770cc9023cb85e9639666 -DSection=debug -UMulti-Arch -UReplaces -UBreaks
chmod 0644 -- debian/.debhelper/pscan-tfbs/dbgsym-root/DEBIAN/control
dpkg-gencontrol -ppscan-tfbs -ldebian/changelog -Tdebian/pscan-tfbs.substvars -Pdebian/pscan-tfbs
chmod 0644 -- debian/pscan-tfbs/DEBIAN/control
dh_md5sums -a
cd debian/pscan-tfbs >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/pscan-tfbs/DEBIAN/md5sums
cd debian/.debhelper/pscan-tfbs/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/pscan-tfbs/dbgsym-root/DEBIAN/md5sums
dh_builddeb -a
dpkg-deb --root-owner-group --build debian/pscan-tfbs ..
dpkg-deb --root-owner-group --build debian/.debhelper/pscan-tfbs/dbgsym-root ..
dpkg-deb: building package 'pscan-tfbs' in '../pscan-tfbs_1.2.2-4_armhf.deb'.
dpkg-deb: building package 'pscan-tfbs-dbgsym' in '../pscan-tfbs-dbgsym_1.2.2-4_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../pscan-tfbs_1.2.2-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-08-14T11:21:02Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
pscan-tfbs_1.2.2-4_armhf.changes:
---------------------------------
Format: 1.8
Date: Wed, 12 Aug 2020 17:17:33 +0530
Source: pscan-tfbs
Binary: pscan-tfbs pscan-tfbs-dbgsym
Architecture: armhf
Version: 1.2.2-4
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <npatra974@gmail.com>
Description:
pscan-tfbs - search for transcription factor binding sites
Changes:
pscan-tfbs (1.2.2-4) unstable; urgency=medium
.
* Team Upload.
[ Steffen Moeller ]
* d/u/metadata: Fixed yaml syntax
* Update metadata
.
[ Nilesh Patra ]
* Add autopkgtests
* Install relevant examples
* Drop compat, switch to debhelper compat version 13
* Add "Rules-Requires-Root:no"
Checksums-Sha1:
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b598adc353b2ea307564af10861fe670af3d45c8 4602 pscan-tfbs_1.2.2-4_armhf.buildinfo
8d0ff894a2aca14a1f38c5051d78457d411ff271 57900 pscan-tfbs_1.2.2-4_armhf.deb
Checksums-Sha256:
f73fde1b08ec8e075185e5cb17e78cc46015c76a998e68f7a2ee98ea1aec2b63 613148 pscan-tfbs-dbgsym_1.2.2-4_armhf.deb
5b384b6aeaf47db9d25634b92d63f104e49304343b66cf1651f59440fe401303 4602 pscan-tfbs_1.2.2-4_armhf.buildinfo
d76ff2644a003a31facf3b2296413c41ff8862b365e4405fced98edbcdb89942 57900 pscan-tfbs_1.2.2-4_armhf.deb
Files:
f90870a3f04c0dad84de4396f5ad22c8 613148 debug optional pscan-tfbs-dbgsym_1.2.2-4_armhf.deb
ea6d524781add17013cae985ed11ac14 4602 science optional pscan-tfbs_1.2.2-4_armhf.buildinfo
a5444192ea24a09133fc598200365e36 57900 science optional pscan-tfbs_1.2.2-4_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
pscan-tfbs-dbgsym_1.2.2-4_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 613148 bytes: control archive=536 bytes.
382 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: pscan-tfbs-dbgsym
Source: pscan-tfbs
Version: 1.2.2-4
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 637
Depends: pscan-tfbs (= 1.2.2-4)
Section: debug
Priority: optional
Description: debug symbols for pscan-tfbs
Build-Ids: 5ceb80f9f6db9524f72770cc9023cb85e9639666
drwxr-xr-x root/root 0 2020-08-12 11:47 ./
drwxr-xr-x root/root 0 2020-08-12 11:47 ./usr/
drwxr-xr-x root/root 0 2020-08-12 11:47 ./usr/lib/
drwxr-xr-x root/root 0 2020-08-12 11:47 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-08-12 11:47 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-08-12 11:47 ./usr/lib/debug/.build-id/5c/
-rw-r--r-- root/root 641656 2020-08-12 11:47 ./usr/lib/debug/.build-id/5c/eb80f9f6db9524f72770cc9023cb85e9639666.debug
drwxr-xr-x root/root 0 2020-08-12 11:47 ./usr/share/
drwxr-xr-x root/root 0 2020-08-12 11:47 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-08-12 11:47 ./usr/share/doc/pscan-tfbs-dbgsym -> pscan-tfbs
pscan-tfbs_1.2.2-4_armhf.deb
----------------------------
new Debian package, version 2.0.
size 57900 bytes: control archive=1276 bytes.
1255 bytes, 24 lines control
670 bytes, 9 lines md5sums
Package: pscan-tfbs
Version: 1.2.2-4
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 151
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libgsl25 (>= 2.6), libstdc++6 (>= 5.2)
Section: science
Priority: optional
Homepage: http://www.beaconlab.it/pscan
Description: search for transcription factor binding sites
Pscan finds Over-represented Transcription Factor Binding Site Motifs in
Sequences from Co-Regulated or Co-Expressed Genes.
.
Pscan is a software tool that scans a set of sequences (e.g. promoters)
from co-regulated or co-expressed genes with motifs describing the
binding specificity of known transcription factors and assesses which
motifs are significantly over- or under-represented, providing thus
hints on which transcription factors could be common regulators of the
genes studied, together with the location of their candidate binding
sites in the sequences. Pscan does not resort to comparisons with
orthologous sequences and experimental results show that it compares
favorably to other tools for the same task in terms of false positive
predictions and computation time. The website is free and open to all
users and there is no login requirement.
drwxr-xr-x root/root 0 2020-08-12 11:47 ./
drwxr-xr-x root/root 0 2020-08-12 11:47 ./usr/
drwxr-xr-x root/root 0 2020-08-12 11:47 ./usr/bin/
lrwxrwxrwx root/root 0 2020-08-12 11:47 ./usr/bin/pscan-tfbs -> ../lib/debian-med/bin/pscan
drwxr-xr-x root/root 0 2020-08-12 11:47 ./usr/lib/
drwxr-xr-x root/root 0 2020-08-12 11:47 ./usr/lib/debian-med/
drwxr-xr-x root/root 0 2020-08-12 11:47 ./usr/lib/debian-med/bin/
-rwxr-xr-x root/root 120332 2020-08-12 11:47 ./usr/lib/debian-med/bin/pscan
drwxr-xr-x root/root 0 2020-08-12 11:47 ./usr/lib/debian-med/share/
drwxr-xr-x root/root 0 2020-08-12 11:47 ./usr/lib/debian-med/share/man/
drwxr-xr-x root/root 0 2020-08-12 11:47 ./usr/lib/debian-med/share/man/man1/
lrwxrwxrwx root/root 0 2020-08-12 11:47 ./usr/lib/debian-med/share/man/man1/pscan.1.gz -> ../../../../../share/man/man1/pscan-tfbs.1.gz
drwxr-xr-x root/root 0 2020-08-12 11:47 ./usr/share/
drwxr-xr-x root/root 0 2020-08-12 11:47 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-08-12 11:47 ./usr/share/doc/pscan-tfbs/
-rw-r--r-- root/root 1924 2012-05-17 14:17 ./usr/share/doc/pscan-tfbs/HELP.txt.gz
-rw-r--r-- root/root 1060 2020-07-10 12:38 ./usr/share/doc/pscan-tfbs/README.Debian
-rw-r--r-- root/root 284 2012-05-17 14:17 ./usr/share/doc/pscan-tfbs/REFERENCE.txt
-rw-r--r-- root/root 819 2020-08-12 11:47 ./usr/share/doc/pscan-tfbs/changelog.Debian.gz
-rw-r--r-- root/root 1370 2020-07-10 12:38 ./usr/share/doc/pscan-tfbs/copyright
drwxr-xr-x root/root 0 2020-08-12 11:47 ./usr/share/doc/pscan-tfbs/examples/
-rw-r--r-- root/root 507 2009-03-03 11:48 ./usr/share/doc/pscan-tfbs/examples/example_matrix_file.wil
-rw-r--r-- root/root 2736 2020-07-10 12:53 ./usr/share/doc/pscan-tfbs/examples/sample.fasta
drwxr-xr-x root/root 0 2020-08-12 11:47 ./usr/share/man/
drwxr-xr-x root/root 0 2020-08-12 11:47 ./usr/share/man/man1/
-rw-r--r-- root/root 2645 2020-08-12 11:47 ./usr/share/man/man1/pscan-tfbs.1.gz
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| Post Build |
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 3764
Build-Time: 131
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 195
Job: pscan-tfbs_1.2.2-4
Machine Architecture: armhf
Package: pscan-tfbs
Package-Time: 375
Source-Version: 1.2.2-4
Space: 3764
Status: successful
Version: 1.2.2-4
--------------------------------------------------------------------------------
Finished at 2020-08-14T11:21:02Z
Build needed 00:06:15, 3764k disc space