Raspbian Package Auto-Building

Build log for prime-phylo (1.0.11-2+b2) on armhf

prime-phylo → 1.0.11-2+b2 → armhf → 2016-03-10 07:04:58 

sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on testwandboard

+==============================================================================+
| prime-phylo 1.0.11-2+b2 (armhf)                            10 Mar 2016 06:38 |
+==============================================================================+

Package: prime-phylo
Version: 1.0.11-2+b2
Source Version: 1.0.11-2
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/prime-phylo-0Sd_Jn/prime-phylo-1.0.11' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/prime-phylo-0Sd_Jn' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-1dfd64a9-0df6-4d92-8921-293ec28a7015' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8789 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [10.9 MB]
Fetched 19.7 MB in 28s (699 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'prime-phylo' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/prime-phylo.git
Please use:
git clone git://anonscm.debian.org/debian-med/prime-phylo.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 758 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main prime-phylo 1.0.11-2 (dsc) [2146 B]
Get:2 http://172.17.0.1/private stretch-staging/main prime-phylo 1.0.11-2 (tar) [751 kB]
Get:3 http://172.17.0.1/private stretch-staging/main prime-phylo 1.0.11-2 (diff) [5008 B]
Fetched 758 kB in 0s (1338 kB/s)
Download complete and in download only mode

Check architectures
-------------------


Check dependencies
------------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-9CM6Wx/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-9CM6Wx/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-9CM6Wx/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-9CM6Wx/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-9CM6Wx/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-9CM6Wx/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-9CM6Wx/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-9CM6Wx/apt_archive ./ Sources [194 B]
Get:5 file:/<<BUILDDIR>>/resolver-9CM6Wx/apt_archive ./ Packages [507 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver)                         |
+------------------------------------------------------------------------------+

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 70 not upgraded.
Need to get 0 B/768 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-9CM6Wx/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12685 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
Merged Build-Depends: debhelper (>= 9.0.0), gengetopt, cmake, libblas-dev, liblapack-dev, gfortran, bison, flex, libopenmpi-dev, libxml2-dev, libboost-dev, libboost-mpi-dev, libboost-serialization-dev, zlib1g-dev
Filtered Build-Depends: debhelper (>= 9.0.0), gengetopt, cmake, libblas-dev, liblapack-dev, gfortran, bison, flex, libopenmpi-dev, libxml2-dev, libboost-dev, libboost-mpi-dev, libboost-serialization-dev, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-prime-phylo-dummy' in '/<<BUILDDIR>>/resolver-YAykWU/apt_archive/sbuild-build-depends-prime-phylo-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-YAykWU/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-YAykWU/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-YAykWU/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-YAykWU/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-YAykWU/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-YAykWU/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-YAykWU/apt_archive ./ Sources [276 B]
Get:5 file:/<<BUILDDIR>>/resolver-YAykWU/apt_archive ./ Packages [599 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

+------------------------------------------------------------------------------+
| Install prime-phylo build dependencies (apt-based resolver)                  |
+------------------------------------------------------------------------------+

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autotools-dev bison bsdmainutils cmake cmake-data cpp-5 debhelper
  dh-strip-nondeterminism file flex g++-5 gcc-5 gcc-5-base gengetopt gettext
  gettext-base gfortran gfortran-5 groff-base icu-devtools intltool-debian
  libarchive-zip-perl libarchive13 libasan2 libatomic1 libbison-dev
  libblas-common libblas-dev libblas3 libboost-dev libboost-mpi-dev
  libboost-mpi1.58-dev libboost-mpi1.58.0 libboost-serialization-dev
  libboost-serialization1.58-dev libboost-serialization1.58.0 libboost1.58-dev
  libcc1-0 libcroco3 libcurl3 libexpat1 libffi6
  libfile-stripnondeterminism-perl libfl-dev libgcc-5-dev libgcc1
  libgfortran-5-dev libgfortran3 libglib2.0-0 libgnutls30 libgomp1
  libgssapi-krb5-2 libhogweed4 libhwloc-dev libhwloc5 libibverbs-dev
  libibverbs1 libicu-dev libicu55 libidn11 libjsoncpp1 libk5crypto3
  libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3
  libldap-2.4-2 libltdl-dev libltdl7 liblzo2-2 libmagic1 libnettle6
  libnghttp2-14 libopenmpi-dev libopenmpi1.10 libp11-kit0 libpipeline1
  librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.0.2
  libstdc++-5-dev libstdc++6 libtasn1-6 libtimedate-perl libubsan0
  libunistring0 libxml2 libxml2-dev m4 man-db mpi-default-dev openmpi-common
  po-debconf zlib1g-dev
Suggested packages:
  bison-doc wamerican | wordlist whois vacation codeblocks eclipse ninja-build
  gcc-5-locales dh-make gcc-5-doc libstdc++6-5-dbg libgcc1-dbg libgomp1-dbg
  libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg libtsan0-dbg
  libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg gettext-doc
  autopoint libasprintf-dev libgettextpo-dev gfortran-doc gfortran-5-doc
  libgfortran3-dbg groff lrzip liblapack-doc-man liblapack-doc libboost-doc
  libboost-graph1.58-dev libboost1.58-doc libboost-atomic1.58-dev
  libboost-chrono1.58-dev libboost-context1.58-dev libboost-coroutine1.58-dev
  libboost-date-time1.58-dev libboost-exception1.58-dev
  libboost-filesystem1.58-dev libboost-graph-parallel1.58-dev
  libboost-iostreams1.58-dev libboost-locale1.58-dev libboost-log1.58-dev
  libboost-math1.58-dev libboost-mpi-python1.58-dev
  libboost-program-options1.58-dev libboost-python1.58-dev
  libboost-random1.58-dev libboost-regex1.58-dev libboost-signals1.58-dev
  libboost-system1.58-dev libboost-test1.58-dev libboost-thread1.58-dev
  libboost-timer1.58-dev libboost-wave1.58-dev libboost1.58-tools-dev
  libmpfrc++-dev libntl-dev gnutls-bin krb5-doc krb5-user
  libhwloc-contrib-plugins icu-doc libtool-doc opennmpi-doc libstdc++-5-doc
  pkg-config less www-browser libmail-box-perl
Recommended packages:
  curl | wget | lynx-cur ca-certificates libglib2.0-data shared-mime-info
  xdg-user-dirs libhwloc-plugins krb5-locales libtool openmpi-bin
  libsasl2-modules xml-core libmail-sendmail-perl
The following NEW packages will be installed:
  autotools-dev bison bsdmainutils cmake cmake-data debhelper
  dh-strip-nondeterminism file flex gengetopt gettext gettext-base gfortran
  gfortran-5 groff-base icu-devtools intltool-debian libarchive-zip-perl
  libarchive13 libbison-dev libblas-common libblas-dev libblas3 libboost-dev
  libboost-mpi-dev libboost-mpi1.58-dev libboost-mpi1.58.0
  libboost-serialization-dev libboost-serialization1.58-dev
  libboost-serialization1.58.0 libboost1.58-dev libcroco3 libcurl3 libexpat1
  libffi6 libfile-stripnondeterminism-perl libfl-dev libgfortran-5-dev
  libgfortran3 libglib2.0-0 libgnutls30 libgssapi-krb5-2 libhogweed4
  libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libicu-dev libicu55
  libidn11 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
  liblapack-dev liblapack3 libldap-2.4-2 libltdl-dev libltdl7 liblzo2-2
  libmagic1 libnettle6 libnghttp2-14 libopenmpi-dev libopenmpi1.10 libp11-kit0
  libpipeline1 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1
  libssl1.0.2 libtasn1-6 libtimedate-perl libunistring0 libxml2 libxml2-dev m4
  man-db mpi-default-dev openmpi-common po-debconf
  sbuild-build-depends-prime-phylo-dummy zlib1g-dev
The following packages will be upgraded:
  cpp-5 g++-5 gcc-5 gcc-5-base libasan2 libatomic1 libcc1-0 libgcc-5-dev
  libgcc1 libgomp1 libstdc++-5-dev libstdc++6 libubsan0
13 upgraded, 86 newly installed, 0 to remove and 57 not upgraded.
Need to get 145 MB/145 MB of archives.
After this operation, 368 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-YAykWU/apt_archive ./ sbuild-build-depends-prime-phylo-dummy 0.invalid.0 [856 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf libgomp1 armhf 5.3.1-10 [47.2 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libatomic1 armhf 5.3.1-10 [6550 B]
Get:4 http://172.17.0.1/private stretch-staging/main armhf gcc-5-base armhf 5.3.1-10 [169 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libgcc1 armhf 1:5.3.1-10 [38.4 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf libasan2 armhf 5.3.1-10 [227 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libubsan0 armhf 5.3.1-10 [84.3 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf cpp-5 armhf 5.3.1-10 [22.9 MB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf libcc1-0 armhf 5.3.1-10 [24.8 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf g++-5 armhf 5.3.1-10 [24.5 MB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf gcc-5 armhf 5.3.1-10 [23.0 MB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libgcc-5-dev armhf 5.3.1-10 [448 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libstdc++-5-dev armhf 5.3.1-10 [1430 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libstdc++6 armhf 5.3.1-10 [326 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-7 [1083 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.6 [177 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf cmake-data all 3.4.1-2 [1110 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libnettle6 armhf 3.2-1 [202 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libicu55 armhf 55.1-7 [7380 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.3+dfsg1-1 [800 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libarchive13 armhf 3.1.2-11+b1 [230 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libkeyutils1 armhf 1.5.9-8 [11.5 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libkrb5support0 armhf 1.13.2+dfsg-5 [56.6 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libk5crypto3 armhf 1.13.2+dfsg-5 [110 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libkrb5-3 armhf 1.13.2+dfsg-5 [259 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libgssapi-krb5-2 armhf 1.13.2+dfsg-5 [130 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libidn11 armhf 1.32-3 [110 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libhogweed4 armhf 3.2-1 [126 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libffi6 armhf 3.2.1-4 [18.5 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libp11-kit0 armhf 0.23.2-3 [93.3 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libtasn1-6 armhf 4.7-3 [44.4 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf libgnutls30 armhf 3.4.9-2 [711 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libsasl2-modules-db armhf 2.1.26.dfsg1-14+b1 [65.8 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libsasl2-2 armhf 2.1.26.dfsg1-14+b1 [97.1 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf libldap-2.4-2 armhf 2.4.42+dfsg-2+rpi1+b2 [198 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libnghttp2-14 armhf 1.8.0-1 [76.7 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d-1+b1 [54.4 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf libssh2-1 armhf 1.5.0-2.1 [121 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2g-1 [886 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libcurl3 armhf 7.47.0-1 [247 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.1.0-7 [59.8 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libjsoncpp1 armhf 1.6.5-4 [63.4 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf cmake armhf 3.4.1-2+b1 [2183 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-4 [28.2 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libfl-dev armhf 2.6.0-11 [84.3 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf flex armhf 2.6.0-11 [404 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.7-2 [111 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20150820.1 [71.7 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf libbison-dev armhf 2:3.0.4.dfsg-1 [433 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf bison armhf 2:3.0.4.dfsg-1 [744 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.46.2-3 [2482 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.7-2 [1400 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.56-2 [94.9 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.016-1 [11.9 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.016-1 [6998 B]
Get:67 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160115 [827 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf gengetopt armhf 2.22.6+dfsg0-1 [174 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 5.3.1-10 [153 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf libgfortran-5-dev armhf 5.3.1-10 [182 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf gfortran-5 armhf 5.3.1-10 [23.7 MB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf gfortran armhf 4:5.3.1-1+rpi1 [1362 B]
Get:73 http://172.17.0.1/private stretch-staging/main armhf icu-devtools armhf 55.1-7 [163 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf libblas-common armhf 3.6.0-2 [13.5 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf libblas3 armhf 3.6.0-2 [110 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf libblas-dev armhf 3.6.0-2 [116 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf libboost1.58-dev armhf 1.58.0+dfsg-5+b1 [6232 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf libboost-dev armhf 1.58.0.1+b1 [3748 B]
Get:79 http://172.17.0.1/private stretch-staging/main armhf libboost-serialization1.58.0 armhf 1.58.0+dfsg-5+b1 [119 kB]
Get:80 http://172.17.0.1/private stretch-staging/main armhf libboost-serialization1.58-dev armhf 1.58.0+dfsg-5+b1 [169 kB]
Get:81 http://172.17.0.1/private stretch-staging/main armhf libltdl7 armhf 2.4.6-0.1 [42.8 kB]
Get:82 http://172.17.0.1/private stretch-staging/main armhf libhwloc5 armhf 1.11.2-3 [80.8 kB]
Get:83 http://172.17.0.1/private stretch-staging/main armhf libibverbs1 armhf 1.1.8-1.1 [28.5 kB]
Get:84 http://172.17.0.1/private stretch-staging/main armhf libopenmpi1.10 armhf 1.10.2-8+rpi1 [1781 kB]
Get:85 http://172.17.0.1/private stretch-staging/main armhf libboost-mpi1.58.0 armhf 1.58.0+dfsg-5+b1 [52.8 kB]
Get:86 http://172.17.0.1/private stretch-staging/main armhf openmpi-common all 1.10.2-8+rpi1 [141 kB]
Get:87 http://172.17.0.1/private stretch-staging/main armhf libibverbs-dev armhf 1.1.8-1.1 [82.6 kB]
Get:88 http://172.17.0.1/private stretch-staging/main armhf libltdl-dev armhf 2.4.6-0.1 [159 kB]
Get:89 http://172.17.0.1/private stretch-staging/main armhf libhwloc-dev armhf 1.11.2-3 [133 kB]
Get:90 http://172.17.0.1/private stretch-staging/main armhf libopenmpi-dev armhf 1.10.2-8+rpi1 [625 kB]
Get:91 http://172.17.0.1/private stretch-staging/main armhf mpi-default-dev armhf 1.4 [4612 B]
Get:92 http://172.17.0.1/private stretch-staging/main armhf libboost-mpi1.58-dev armhf 1.58.0+dfsg-5+b1 [71.8 kB]
Get:93 http://172.17.0.1/private stretch-staging/main armhf libboost-mpi-dev armhf 1.58.0.1+b1 [3480 B]
Get:94 http://172.17.0.1/private stretch-staging/main armhf libboost-serialization-dev armhf 1.58.0.1+b1 [3614 B]
Get:95 http://172.17.0.1/private stretch-staging/main armhf libicu-dev armhf 55.1-7 [8339 kB]
Get:96 http://172.17.0.1/private stretch-staging/main armhf liblapack3 armhf 3.6.0-2 [1382 kB]
Get:97 http://172.17.0.1/private stretch-staging/main armhf liblapack-dev armhf 3.6.0-2 [1355 kB]
Get:98 http://172.17.0.1/private stretch-staging/main armhf libxml2-dev armhf 2.9.3+dfsg1-1 [720 kB]
Get:99 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 145 MB in 56s (2548 kB/s)
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12685 files and directories currently installed.)
Preparing to unpack .../libgomp1_5.3.1-10_armhf.deb ...
Unpacking libgomp1:armhf (5.3.1-10) over (5.3.1-8+rpi1) ...
Preparing to unpack .../libatomic1_5.3.1-10_armhf.deb ...
Unpacking libatomic1:armhf (5.3.1-10) over (5.3.1-8+rpi1) ...
Preparing to unpack .../gcc-5-base_5.3.1-10_armhf.deb ...
Unpacking gcc-5-base:armhf (5.3.1-10) over (5.3.1-8+rpi1) ...
Processing triggers for libc-bin (2.21-7) ...
Setting up gcc-5-base:armhf (5.3.1-10) ...
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12685 files and directories currently installed.)
Preparing to unpack .../libgcc1_1%3a5.3.1-10_armhf.deb ...
Unpacking libgcc1:armhf (1:5.3.1-10) over (1:5.3.1-8+rpi1) ...
Processing triggers for libc-bin (2.21-7) ...
Setting up libgcc1:armhf (1:5.3.1-10) ...
Processing triggers for libc-bin (2.21-7) ...
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12685 files and directories currently installed.)
Preparing to unpack .../libasan2_5.3.1-10_armhf.deb ...
Unpacking libasan2:armhf (5.3.1-10) over (5.3.1-8+rpi1) ...
Preparing to unpack .../libubsan0_5.3.1-10_armhf.deb ...
Unpacking libubsan0:armhf (5.3.1-10) over (5.3.1-8+rpi1) ...
Preparing to unpack .../cpp-5_5.3.1-10_armhf.deb ...
Unpacking cpp-5 (5.3.1-10) over (5.3.1-8+rpi1) ...
Preparing to unpack .../libcc1-0_5.3.1-10_armhf.deb ...
Unpacking libcc1-0:armhf (5.3.1-10) over (5.3.1-8+rpi1) ...
Preparing to unpack .../g++-5_5.3.1-10_armhf.deb ...
Unpacking g++-5 (5.3.1-10) over (5.3.1-8+rpi1) ...
Preparing to unpack .../gcc-5_5.3.1-10_armhf.deb ...
Unpacking gcc-5 (5.3.1-10) over (5.3.1-8+rpi1) ...
Preparing to unpack .../libgcc-5-dev_5.3.1-10_armhf.deb ...
Unpacking libgcc-5-dev:armhf (5.3.1-10) over (5.3.1-8+rpi1) ...
Preparing to unpack .../libstdc++-5-dev_5.3.1-10_armhf.deb ...
Unpacking libstdc++-5-dev:armhf (5.3.1-10) over (5.3.1-8+rpi1) ...
Preparing to unpack .../libstdc++6_5.3.1-10_armhf.deb ...
Unpacking libstdc++6:armhf (5.3.1-10) over (5.3.1-8+rpi1) ...
Processing triggers for libc-bin (2.21-7) ...
Setting up libstdc++6:armhf (5.3.1-10) ...
Processing triggers for libc-bin (2.21-7) ...
Selecting previously unselected package groff-base.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12685 files and directories currently installed.)
Preparing to unpack .../groff-base_1.22.3-7_armhf.deb ...
Unpacking groff-base (1.22.3-7) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../bsdmainutils_9.0.6_armhf.deb ...
Unpacking bsdmainutils (9.0.6) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../libpipeline1_1.4.1-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.1-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../man-db_2.7.5-1_armhf.deb ...
Unpacking man-db (2.7.5-1) ...
Selecting previously unselected package cmake-data.
Preparing to unpack .../cmake-data_3.4.1-2_all.deb ...
Unpacking cmake-data (3.4.1-2) ...
Selecting previously unselected package liblzo2-2:armhf.
Preparing to unpack .../liblzo2-2_2.08-1.2_armhf.deb ...
Unpacking liblzo2-2:armhf (2.08-1.2) ...
Selecting previously unselected package libnettle6:armhf.
Preparing to unpack .../libnettle6_3.2-1_armhf.deb ...
Unpacking libnettle6:armhf (3.2-1) ...
Selecting previously unselected package libicu55:armhf.
Preparing to unpack .../libicu55_55.1-7_armhf.deb ...
Unpacking libicu55:armhf (55.1-7) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../libxml2_2.9.3+dfsg1-1_armhf.deb ...
Unpacking libxml2:armhf (2.9.3+dfsg1-1) ...
Selecting previously unselected package libarchive13:armhf.
Preparing to unpack .../libarchive13_3.1.2-11+b1_armhf.deb ...
Unpacking libarchive13:armhf (3.1.2-11+b1) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../libkeyutils1_1.5.9-8_armhf.deb ...
Unpacking libkeyutils1:armhf (1.5.9-8) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../libkrb5support0_1.13.2+dfsg-5_armhf.deb ...
Unpacking libkrb5support0:armhf (1.13.2+dfsg-5) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../libk5crypto3_1.13.2+dfsg-5_armhf.deb ...
Unpacking libk5crypto3:armhf (1.13.2+dfsg-5) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../libkrb5-3_1.13.2+dfsg-5_armhf.deb ...
Unpacking libkrb5-3:armhf (1.13.2+dfsg-5) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../libgssapi-krb5-2_1.13.2+dfsg-5_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.13.2+dfsg-5) ...
Selecting previously unselected package libidn11:armhf.
Preparing to unpack .../libidn11_1.32-3_armhf.deb ...
Unpacking libidn11:armhf (1.32-3) ...
Selecting previously unselected package libhogweed4:armhf.
Preparing to unpack .../libhogweed4_3.2-1_armhf.deb ...
Unpacking libhogweed4:armhf (3.2-1) ...
Selecting previously unselected package libffi6:armhf.
Preparing to unpack .../libffi6_3.2.1-4_armhf.deb ...
Unpacking libffi6:armhf (3.2.1-4) ...
Selecting previously unselected package libp11-kit0:armhf.
Preparing to unpack .../libp11-kit0_0.23.2-3_armhf.deb ...
Unpacking libp11-kit0:armhf (0.23.2-3) ...
Selecting previously unselected package libtasn1-6:armhf.
Preparing to unpack .../libtasn1-6_4.7-3_armhf.deb ...
Unpacking libtasn1-6:armhf (4.7-3) ...
Selecting previously unselected package libgnutls30:armhf.
Preparing to unpack .../libgnutls30_3.4.9-2_armhf.deb ...
Unpacking libgnutls30:armhf (3.4.9-2) ...
Selecting previously unselected package libsasl2-modules-db:armhf.
Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-14+b1_armhf.deb ...
Unpacking libsasl2-modules-db:armhf (2.1.26.dfsg1-14+b1) ...
Selecting previously unselected package libsasl2-2:armhf.
Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-14+b1_armhf.deb ...
Unpacking libsasl2-2:armhf (2.1.26.dfsg1-14+b1) ...
Selecting previously unselected package libldap-2.4-2:armhf.
Preparing to unpack .../libldap-2.4-2_2.4.42+dfsg-2+rpi1+b2_armhf.deb ...
Unpacking libldap-2.4-2:armhf (2.4.42+dfsg-2+rpi1+b2) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../libnghttp2-14_1.8.0-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.8.0-1) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d-1+b1_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d-1+b1) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../libssh2-1_1.5.0-2.1_armhf.deb ...
Unpacking libssh2-1:armhf (1.5.0-2.1) ...
Selecting previously unselected package libssl1.0.2:armhf.
Preparing to unpack .../libssl1.0.2_1.0.2g-1_armhf.deb ...
Unpacking libssl1.0.2:armhf (1.0.2g-1) ...
Selecting previously unselected package libcurl3:armhf.
Preparing to unpack .../libcurl3_7.47.0-1_armhf.deb ...
Unpacking libcurl3:armhf (7.47.0-1) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../libexpat1_2.1.0-7_armhf.deb ...
Unpacking libexpat1:armhf (2.1.0-7) ...
Selecting previously unselected package libjsoncpp1:armhf.
Preparing to unpack .../libjsoncpp1_1.6.5-4_armhf.deb ...
Unpacking libjsoncpp1:armhf (1.6.5-4) ...
Selecting previously unselected package cmake.
Preparing to unpack .../cmake_3.4.1-2+b1_armhf.deb ...
Unpacking cmake (3.4.1-2+b1) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../libsigsegv2_2.10-4_armhf.deb ...
Unpacking libsigsegv2:armhf (2.10-4) ...
Selecting previously unselected package m4.
Preparing to unpack .../archives/m4_1.4.17-5_armhf.deb ...
Unpacking m4 (1.4.17-5) ...
Selecting previously unselected package libfl-dev:armhf.
Preparing to unpack .../libfl-dev_2.6.0-11_armhf.deb ...
Unpacking libfl-dev:armhf (2.6.0-11) ...
Selecting previously unselected package flex.
Preparing to unpack .../flex_2.6.0-11_armhf.deb ...
Unpacking flex (2.6.0-11) ...
Selecting previously unselected package libunistring0:armhf.
Preparing to unpack .../libunistring0_0.9.3-5.2_armhf.deb ...
Unpacking libunistring0:armhf (0.9.3-5.2) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../libmagic1_1%3a5.25-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.25-2) ...
Selecting previously unselected package file.
Preparing to unpack .../file_1%3a5.25-2_armhf.deb ...
Unpacking file (1:5.25-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../gettext-base_0.19.7-2_armhf.deb ...
Unpacking gettext-base (0.19.7-2) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../autotools-dev_20150820.1_all.deb ...
Unpacking autotools-dev (20150820.1) ...
Selecting previously unselected package libbison-dev:armhf.
Preparing to unpack .../libbison-dev_2%3a3.0.4.dfsg-1_armhf.deb ...
Unpacking libbison-dev:armhf (2:3.0.4.dfsg-1) ...
Selecting previously unselected package bison.
Preparing to unpack .../bison_2%3a3.0.4.dfsg-1_armhf.deb ...
Unpacking bison (2:3.0.4.dfsg-1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../libglib2.0-0_2.46.2-3_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.46.2-3) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../libcroco3_0.6.11-1_armhf.deb ...
Unpacking libcroco3:armhf (0.6.11-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../gettext_0.19.7-2_armhf.deb ...
Unpacking gettext (0.19.7-2) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../po-debconf_1.0.19_all.deb ...
Unpacking po-debconf (1.0.19) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../libarchive-zip-perl_1.56-2_all.deb ...
Unpacking libarchive-zip-perl (1.56-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../libfile-stripnondeterminism-perl_0.016-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (0.016-1) ...
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ...
Unpacking libtimedate-perl (2.3000-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../dh-strip-nondeterminism_0.016-1_all.deb ...
Unpacking dh-strip-nondeterminism (0.016-1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../debhelper_9.20160115_all.deb ...
Unpacking debhelper (9.20160115) ...
Selecting previously unselected package gengetopt.
Preparing to unpack .../gengetopt_2.22.6+dfsg0-1_armhf.deb ...
Unpacking gengetopt (2.22.6+dfsg0-1) ...
Selecting previously unselected package libgfortran3:armhf.
Preparing to unpack .../libgfortran3_5.3.1-10_armhf.deb ...
Unpacking libgfortran3:armhf (5.3.1-10) ...
Selecting previously unselected package libgfortran-5-dev:armhf.
Preparing to unpack .../libgfortran-5-dev_5.3.1-10_armhf.deb ...
Unpacking libgfortran-5-dev:armhf (5.3.1-10) ...
Selecting previously unselected package gfortran-5.
Preparing to unpack .../gfortran-5_5.3.1-10_armhf.deb ...
Unpacking gfortran-5 (5.3.1-10) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../gfortran_4%3a5.3.1-1+rpi1_armhf.deb ...
Unpacking gfortran (4:5.3.1-1+rpi1) ...
Selecting previously unselected package icu-devtools.
Preparing to unpack .../icu-devtools_55.1-7_armhf.deb ...
Unpacking icu-devtools (55.1-7) ...
Selecting previously unselected package libblas-common.
Preparing to unpack .../libblas-common_3.6.0-2_armhf.deb ...
Unpacking libblas-common (3.6.0-2) ...
Selecting previously unselected package libblas3.
Preparing to unpack .../libblas3_3.6.0-2_armhf.deb ...
Unpacking libblas3 (3.6.0-2) ...
Selecting previously unselected package libblas-dev.
Preparing to unpack .../libblas-dev_3.6.0-2_armhf.deb ...
Unpacking libblas-dev (3.6.0-2) ...
Selecting previously unselected package libboost1.58-dev:armhf.
Preparing to unpack .../libboost1.58-dev_1.58.0+dfsg-5+b1_armhf.deb ...
Unpacking libboost1.58-dev:armhf (1.58.0+dfsg-5+b1) ...
Selecting previously unselected package libboost-dev:armhf.
Preparing to unpack .../libboost-dev_1.58.0.1+b1_armhf.deb ...
Unpacking libboost-dev:armhf (1.58.0.1+b1) ...
Selecting previously unselected package libboost-serialization1.58.0:armhf.
Preparing to unpack .../libboost-serialization1.58.0_1.58.0+dfsg-5+b1_armhf.deb ...
Unpacking libboost-serialization1.58.0:armhf (1.58.0+dfsg-5+b1) ...
Selecting previously unselected package libboost-serialization1.58-dev:armhf.
Preparing to unpack .../libboost-serialization1.58-dev_1.58.0+dfsg-5+b1_armhf.deb ...
Unpacking libboost-serialization1.58-dev:armhf (1.58.0+dfsg-5+b1) ...
Selecting previously unselected package libltdl7:armhf.
Preparing to unpack .../libltdl7_2.4.6-0.1_armhf.deb ...
Unpacking libltdl7:armhf (2.4.6-0.1) ...
Selecting previously unselected package libhwloc5:armhf.
Preparing to unpack .../libhwloc5_1.11.2-3_armhf.deb ...
Unpacking libhwloc5:armhf (1.11.2-3) ...
Selecting previously unselected package libibverbs1.
Preparing to unpack .../libibverbs1_1.1.8-1.1_armhf.deb ...
Unpacking libibverbs1 (1.1.8-1.1) ...
Selecting previously unselected package libopenmpi1.10.
Preparing to unpack .../libopenmpi1.10_1.10.2-8+rpi1_armhf.deb ...
Unpacking libopenmpi1.10 (1.10.2-8+rpi1) ...
Selecting previously unselected package libboost-mpi1.58.0.
Preparing to unpack .../libboost-mpi1.58.0_1.58.0+dfsg-5+b1_armhf.deb ...
Unpacking libboost-mpi1.58.0 (1.58.0+dfsg-5+b1) ...
Selecting previously unselected package openmpi-common.
Preparing to unpack .../openmpi-common_1.10.2-8+rpi1_all.deb ...
Unpacking openmpi-common (1.10.2-8+rpi1) ...
Selecting previously unselected package libibverbs-dev.
Preparing to unpack .../libibverbs-dev_1.1.8-1.1_armhf.deb ...
Unpacking libibverbs-dev (1.1.8-1.1) ...
Selecting previously unselected package libltdl-dev:armhf.
Preparing to unpack .../libltdl-dev_2.4.6-0.1_armhf.deb ...
Unpacking libltdl-dev:armhf (2.4.6-0.1) ...
Selecting previously unselected package libhwloc-dev:armhf.
Preparing to unpack .../libhwloc-dev_1.11.2-3_armhf.deb ...
Unpacking libhwloc-dev:armhf (1.11.2-3) ...
Selecting previously unselected package libopenmpi-dev.
Preparing to unpack .../libopenmpi-dev_1.10.2-8+rpi1_armhf.deb ...
Unpacking libopenmpi-dev (1.10.2-8+rpi1) ...
Selecting previously unselected package mpi-default-dev.
Preparing to unpack .../mpi-default-dev_1.4_armhf.deb ...
Unpacking mpi-default-dev (1.4) ...
Selecting previously unselected package libboost-mpi1.58-dev.
Preparing to unpack .../libboost-mpi1.58-dev_1.58.0+dfsg-5+b1_armhf.deb ...
Unpacking libboost-mpi1.58-dev (1.58.0+dfsg-5+b1) ...
Selecting previously unselected package libboost-mpi-dev.
Preparing to unpack .../libboost-mpi-dev_1.58.0.1+b1_armhf.deb ...
Unpacking libboost-mpi-dev (1.58.0.1+b1) ...
Selecting previously unselected package libboost-serialization-dev:armhf.
Preparing to unpack .../libboost-serialization-dev_1.58.0.1+b1_armhf.deb ...
Unpacking libboost-serialization-dev:armhf (1.58.0.1+b1) ...
Selecting previously unselected package libicu-dev:armhf.
Preparing to unpack .../libicu-dev_55.1-7_armhf.deb ...
Unpacking libicu-dev:armhf (55.1-7) ...
Selecting previously unselected package liblapack3.
Preparing to unpack .../liblapack3_3.6.0-2_armhf.deb ...
Unpacking liblapack3 (3.6.0-2) ...
Selecting previously unselected package liblapack-dev.
Preparing to unpack .../liblapack-dev_3.6.0-2_armhf.deb ...
Unpacking liblapack-dev (3.6.0-2) ...
Selecting previously unselected package libxml2-dev:armhf.
Preparing to unpack .../libxml2-dev_2.9.3+dfsg1-1_armhf.deb ...
Unpacking libxml2-dev:armhf (2.9.3+dfsg1-1) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2+b1_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Selecting previously unselected package sbuild-build-depends-prime-phylo-dummy.
Preparing to unpack .../sbuild-build-depends-prime-phylo-dummy.deb ...
Unpacking sbuild-build-depends-prime-phylo-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.21-7) ...
Setting up libgomp1:armhf (5.3.1-10) ...
Setting up libatomic1:armhf (5.3.1-10) ...
Setting up libasan2:armhf (5.3.1-10) ...
Setting up libubsan0:armhf (5.3.1-10) ...
Setting up cpp-5 (5.3.1-10) ...
Setting up libcc1-0:armhf (5.3.1-10) ...
Setting up libgcc-5-dev:armhf (5.3.1-10) ...
Setting up gcc-5 (5.3.1-10) ...
Setting up libstdc++-5-dev:armhf (5.3.1-10) ...
Setting up g++-5 (5.3.1-10) ...
Setting up groff-base (1.22.3-7) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up cmake-data (3.4.1-2) ...
Setting up liblzo2-2:armhf (2.08-1.2) ...
Setting up libnettle6:armhf (3.2-1) ...
Setting up libicu55:armhf (55.1-7) ...
Setting up libxml2:armhf (2.9.3+dfsg1-1) ...
Setting up libarchive13:armhf (3.1.2-11+b1) ...
Setting up libkeyutils1:armhf (1.5.9-8) ...
Setting up libkrb5support0:armhf (1.13.2+dfsg-5) ...
Setting up libk5crypto3:armhf (1.13.2+dfsg-5) ...
Setting up libkrb5-3:armhf (1.13.2+dfsg-5) ...
Setting up libgssapi-krb5-2:armhf (1.13.2+dfsg-5) ...
Setting up libidn11:armhf (1.32-3) ...
Setting up libhogweed4:armhf (3.2-1) ...
Setting up libffi6:armhf (3.2.1-4) ...
Setting up libp11-kit0:armhf (0.23.2-3) ...
Setting up libtasn1-6:armhf (4.7-3) ...
Setting up libgnutls30:armhf (3.4.9-2) ...
Setting up libsasl2-modules-db:armhf (2.1.26.dfsg1-14+b1) ...
Setting up libsasl2-2:armhf (2.1.26.dfsg1-14+b1) ...
Setting up libldap-2.4-2:armhf (2.4.42+dfsg-2+rpi1+b2) ...
Setting up libnghttp2-14:armhf (1.8.0-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d-1+b1) ...
Setting up libssh2-1:armhf (1.5.0-2.1) ...
Setting up libssl1.0.2:armhf (1.0.2g-1) ...
Setting up libcurl3:armhf (7.47.0-1) ...
Setting up libexpat1:armhf (2.1.0-7) ...
Setting up libjsoncpp1:armhf (1.6.5-4) ...
Setting up cmake (3.4.1-2+b1) ...
Setting up libsigsegv2:armhf (2.10-4) ...
Setting up m4 (1.4.17-5) ...
Setting up libfl-dev:armhf (2.6.0-11) ...
Setting up flex (2.6.0-11) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libmagic1:armhf (1:5.25-2) ...
Setting up file (1:5.25-2) ...
Setting up gettext-base (0.19.7-2) ...
Setting up autotools-dev (20150820.1) ...
Setting up libbison-dev:armhf (2:3.0.4.dfsg-1) ...
Setting up bison (2:3.0.4.dfsg-1) ...
update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode
Setting up libglib2.0-0:armhf (2.46.2-3) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up gettext (0.19.7-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.19) ...
Setting up libarchive-zip-perl (1.56-2) ...
Setting up libfile-stripnondeterminism-perl (0.016-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up gengetopt (2.22.6+dfsg0-1) ...
Setting up libgfortran3:armhf (5.3.1-10) ...
Setting up libgfortran-5-dev:armhf (5.3.1-10) ...
Setting up gfortran-5 (5.3.1-10) ...
Setting up gfortran (4:5.3.1-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up icu-devtools (55.1-7) ...
Setting up libblas-common (3.6.0-2) ...
Setting up libblas3 (3.6.0-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libblas-dev (3.6.0-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libboost1.58-dev:armhf (1.58.0+dfsg-5+b1) ...
Setting up libboost-dev:armhf (1.58.0.1+b1) ...
Setting up libboost-serialization1.58.0:armhf (1.58.0+dfsg-5+b1) ...
Setting up libboost-serialization1.58-dev:armhf (1.58.0+dfsg-5+b1) ...
Setting up libltdl7:armhf (2.4.6-0.1) ...
Setting up libhwloc5:armhf (1.11.2-3) ...
Setting up libibverbs1 (1.1.8-1.1) ...
Setting up libopenmpi1.10 (1.10.2-8+rpi1) ...
Setting up libboost-mpi1.58.0 (1.58.0+dfsg-5+b1) ...
Setting up openmpi-common (1.10.2-8+rpi1) ...
Setting up libibverbs-dev (1.1.8-1.1) ...
Setting up libltdl-dev:armhf (2.4.6-0.1) ...
Setting up libhwloc-dev:armhf (1.11.2-3) ...
Setting up libopenmpi-dev (1.10.2-8+rpi1) ...
update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode
Setting up mpi-default-dev (1.4) ...
Setting up libboost-mpi1.58-dev (1.58.0+dfsg-5+b1) ...
Setting up libboost-mpi-dev (1.58.0.1+b1) ...
Setting up libboost-serialization-dev:armhf (1.58.0.1+b1) ...
Setting up libicu-dev:armhf (55.1-7) ...
Setting up liblapack3 (3.6.0-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up liblapack-dev (3.6.0-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up libxml2-dev:armhf (2.9.3+dfsg1-1) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Setting up debhelper (9.20160115) ...
Setting up sbuild-build-depends-prime-phylo-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.016-1) ...
Processing triggers for libc-bin (2.21-7) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.3.0-1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26-3 dpkg-dev_1.18.4 g++-5_5.3.1-10 gcc-5_5.3.1-10 libc6-dev_2.21-7 libstdc++-5-dev_5.3.1-10 libstdc++6_5.3.1-10 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.113+nmu3 apt_1.2.3 autotools-dev_20150820.1 base-files_9.5+rpi1 base-passwd_3.5.39 bash_4.3-14 binutils_2.26-3 bison_2:3.0.4.dfsg-1 bsdmainutils_9.0.6 bsdutils_1:2.27.1-3 build-essential_11.7 bzip2_1.0.6-8 cmake_3.4.1-2+b1 cmake-data_3.4.1-2 coreutils_8.24-1 cpio_2.11+dfsg-4.1 cpp_4:5.3.1-1+rpi1 cpp-5_5.3.1-10 dash_0.5.8-2.1 debconf_1.5.58 debfoster_2.7-2 debhelper_9.20160115 debianutils_4.7 dh-strip-nondeterminism_0.016-1 diffutils_1:3.3-3 dmsetup_2:1.02.115-2 dpkg_1.18.4 dpkg-dev_1.18.4 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.6.0+git+20160126-2 flex_2.6.0-11 g++_4:5.3.1-1+rpi1 g++-5_5.3.1-10 gcc_4:5.3.1-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-10 gcc-5_5.3.1-10 gcc-5-base_5.3.1-10 gengetopt_2.22.6+dfsg0-1 gettext_0.19.7-2 gettext-base_0.19.7-2 gfortran_4:5.3.1-1+rpi1 gfortran-5_5.3.1-10 gnupg_1.4.20-1 gpgv_1.4.20-1 grep_2.22-1 groff-base_1.22.3-7 gzip_1.6-4 hostname_3.16 icu-devtools_55.1-7 init_1.24 init-system-helpers_1.24 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5.2 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-7+rpi1 kmod_22-1 libacl1_2.2.52-3 libapparmor1_2.10-3 libapt-pkg5.0_1.2.3 libarchive-zip-perl_1.56-2 libarchive13_3.1.2-11+b1 libasan2_5.3.1-10 libatomic1_5.3.1-10 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1 libaudit1_1:2.4.5-1 libbison-dev_2:3.0.4.dfsg-1 libblas-common_3.6.0-2 libblas-dev_3.6.0-2 libblas3_3.6.0-2 libblkid1_2.27.1-3 libboost-dev_1.58.0.1+b1 libboost-mpi-dev_1.58.0.1+b1 libboost-mpi1.58-dev_1.58.0+dfsg-5+b1 libboost-mpi1.58.0_1.58.0+dfsg-5+b1 libboost-serialization-dev_1.58.0.1+b1 libboost-serialization1.58-dev_1.58.0+dfsg-5+b1 libboost-serialization1.58.0_1.58.0+dfsg-5+b1 libboost1.58-dev_1.58.0+dfsg-5+b1 libbz2-1.0_1.0.6-8 libc-bin_2.21-7 libc-dev-bin_2.21-7 libc6_2.21-7 libc6-dev_2.21-7 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-10 libcomerr2_1.42.13-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libcurl3_7.47.0-1 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1 libdebconfclient0_0.204 libdevmapper1.02.1_2:1.02.115-2 libdpkg-perl_1.18.4 libdrm2_2.4.66-2 libexpat1_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.27.1-3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.016-1 libfl-dev_2.6.0-11 libgc1c2_1:7.4.2-7.3 libgcc-5-dev_5.3.1-10 libgcc1_1:5.3.1-10 libgcrypt20_1.6.4-5 libgdbm3_1.8.3-13.1 libgfortran-5-dev_5.3.1-10 libgfortran3_5.3.1-10 libglib2.0-0_2.46.2-3 libgmp10_2:6.1.0+dfsg-2 libgnutls30_3.4.9-2 libgomp1_5.3.1-10 libgpg-error0_1.21-1 libgssapi-krb5-2_1.13.2+dfsg-5 libhogweed4_3.2-1 libhwloc-dev_1.11.2-3 libhwloc5_1.11.2-3 libibverbs-dev_1.1.8-1.1 libibverbs1_1.1.8-1.1 libicu-dev_55.1-7 libicu55_55.1-7 libidn11_1.32-3 libisl15_0.16.1-1 libjsoncpp1_1.6.5-4 libk5crypto3_1.13.2+dfsg-5 libkeyutils1_1.5.9-8 libklibc_2.0.4-7+rpi1 libkmod2_22-1 libkrb5-3_1.13.2+dfsg-5 libkrb5support0_1.13.2+dfsg-5 liblapack-dev_3.6.0-2 liblapack3_3.6.0-2 libldap-2.4-2_2.4.42+dfsg-2+rpi1+b2 libltdl-dev_2.4.6-0.1 libltdl7_2.4.6-0.1 liblz4-1_0.0~r131-1 liblzma5_5.1.1alpha+20120614-2.1 liblzo2-2_2.08-1.2 libmagic1_1:5.25-2 libmount1_2.27.1-3 libmpc3_1.0.3-1 libmpfr4_3.1.3-2 libncurses5_6.0+20151024-2 libncursesw5_6.0+20151024-2 libnettle6_3.2-1 libnghttp2-14_1.8.0-1 libopenmpi-dev_1.10.2-8+rpi1 libopenmpi1.10_1.10.2-8+rpi1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.2 libpam-modules-bin_1.1.8-3.2 libpam-runtime_1.1.8-3.2 libpam0g_1.1.8-3.2 libpcre3_2:8.38-1 libperl5.22_5.22.1-5 libpipeline1_1.4.1-2 libplymouth4_0.9.2-3 libpng12-0_1.2.54-1 libprocps5_2:3.3.11-3 libreadline6_6.3-8+b3 librtmp1_2.4+20151223.gitfa8646d-1+b1 libsasl2-2_2.1.26.dfsg1-14+b1 libsasl2-modules-db_2.1.26.dfsg1-14+b1 libseccomp2_2.2.3-2 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libsigsegv2_2.10-4 libsmartcols1_2.27.1-3 libss2_1.42.13-1 libssh2-1_1.5.0-2.1 libssl1.0.2_1.0.2g-1 libstdc++-5-dev_5.3.1-10 libstdc++6_5.3.1-10 libsystemd0_228-6 libtasn1-6_4.7-3 libtext-charwidth-perl_0.04-7+b6 libtext-iconv-perl_1.7-5+b7 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20151024-2 libubsan0_5.3.1-10 libudev1_228-6 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-3 libxml2_2.9.3+dfsg1-1 libxml2-dev_2.9.3+dfsg1-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160110+rpi1 m4_1.4.17-5 make_4.1-5 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.04-1 mawk_1.3.3-17 mount_2.27.1-3 mpi-default-dev_1.4 multiarch-support_2.21-7 ncurses-base_6.0+20151024-2 ncurses-bin_6.0+20151024-2 openmpi-common_1.10.2-8+rpi1 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.1-5 perl-base_5.22.1-5 perl-modules-5.22_5.22.1-7 plymouth_0.9.2-3 po-debconf_1.0.19 procps_2:3.3.11-3 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-prime-phylo-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_228-6 systemd-sysv_228-6 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-2.1 tzdata_2016a-1 udev_228-6 util-linux_2.27.1-3 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Fri Oct 17 08:07:35 2014 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./prime-phylo_1.0.11-2.dsc
dpkg-source: info: extracting prime-phylo in prime-phylo-1.0.11
dpkg-source: info: unpacking prime-phylo_1.0.11.orig.tar.gz
dpkg-source: info: unpacking prime-phylo_1.0.11-2.debian.tar.xz

Check disc space
----------------

Sufficient free space for build

Hack binNMU version
-------------------

Created changelog entry for binNMU version 1.0.11-2+b2

User Environment
----------------

DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-1dfd64a9-0df6-4d92-8921-293ec28a7015
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: source package prime-phylo
dpkg-buildpackage: source version 1.0.11-2+b2
dpkg-buildpackage: source distribution stretch-staging
 dpkg-source --before-build prime-phylo-1.0.11
dpkg-buildpackage: host architecture armhf
 fakeroot debian/rules clean
dh clean --buildsystem=cmake --parallel
   dh_testdir -O--buildsystem=cmake -O--parallel
   dh_auto_clean -O--buildsystem=cmake -O--parallel
   dh_clean -O--buildsystem=cmake -O--parallel
 debian/rules build-arch
dh build-arch --buildsystem=cmake --parallel
   dh_testdir -a -O--buildsystem=cmake -O--parallel
   dh_update_autotools_config -a -O--buildsystem=cmake -O--parallel
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- \
-Dofficial_binary_packaging=on \
-Dprime_dynamic=on \
-DCMAKE_INSTALL_PREFIX=/usr \
-DCMAKE_INSTALL_RPATH=/usr/lib/prime-phylo \
-DCMAKE_BUILD_TYPE=RELEASE
	cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -Dofficial_binary_packaging=on -Dprime_dynamic=on -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_INSTALL_RPATH=/usr/lib/prime-phylo -DCMAKE_BUILD_TYPE=RELEASE
-- The CXX compiler identification is GNU 5.3.1
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- The Fortran compiler identification is GNU 5.3.1
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran  -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
-- The C compiler identification is GNU 5.3.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - found
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- A library with BLAS API found.
hittade /usr/lib/libblas.so
-- A library with BLAS API found.
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- A library with LAPACK API found.
-- Found BISON: /usr/bin/bison (found version "3.0.4") 
-- Found FLEX: /usr/bin/flex (found version "2.6.0") 
-- Found MPI_C: /usr/lib/openmpi/lib/libmpi.so  
-- Found MPI_CXX: /usr/lib/openmpi/lib/libmpi_cxx.so;/usr/lib/openmpi/lib/libmpi.so  
-- Found MPI_Fortran: /usr/lib/openmpi/lib/libmpi_usempif08.so;/usr/lib/openmpi/lib/libmpi_usempi_ignore_tkr.so;/usr/lib/openmpi/lib/libmpi_mpifh.so;/usr/lib/openmpi/lib/libmpi.so  
-- Boost version: 1.58.0
-- Found the following Boost libraries:
--   mpi
--   serialization
-- Found LibXml2: /usr/lib/arm-linux-gnueabihf/libxml2.so (found version "2.9.3") 
mpilib is /usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent;/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include;/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi 
included path is  
CMake Warning (dev) at src/cxx/CMakeLists.txt:366 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "primeDTLSR".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  src/cxx/applications/primeDTLSR/CMakeLists.txt:30 (prime_add_tests)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at src/cxx/CMakeLists.txt:366 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "primeDLRS".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  src/cxx/applications/primeDLRS/CMakeLists.txt:27 (prime_add_tests)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at src/cxx/CMakeLists.txt:366 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "showtree".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  src/cxx/tools/showtree/CMakeLists.txt:12 (prime_add_tests)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at CMakeLists.txt:120 (if):
  Policy CMP0053 is not set: Simplify variable reference and escape sequence
  evaluation.  Run "cmake --help-policy CMP0053" for policy details.  Use the
  cmake_policy command to set the policy and suppress this warning.

  For input:

    '@CMAKE_SOURCE_DIR@/excluded_from_release'

  the old evaluation rules produce:

    '/<<PKGBUILDDIR>>/excluded_from_release'

  but the new evaluation rules produce:

    '@CMAKE_SOURCE_DIR@/excluded_from_release'

  Using the old result for compatibility since the policy is not set.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_INSTALL_LOCALSTATEDIR
    CMAKE_INSTALL_SYSCONFDIR


-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_build -a -O--buildsystem=cmake -O--parallel
	make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/build.make src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[  1%] [BISON][MyParser2] Building parser with bison 3.0.4
[  1%] [FLEX][MyScanner2] Building scanner with flex 2.6.0
cd /<<PKGBUILDDIR>>/src/cxx/libraries/sfile && /usr/bin/flex -o/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/lexer.c seqreader.l
cd /<<PKGBUILDDIR>>/src/cxx/libraries/sfile && /usr/bin/bison -d -d -o /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/gb.tab.c gb.y
gb.y: warning: 1 nonterminal useless in grammar [-Wother]
gb.y: warning: 1 rule useless in grammar [-Wother]
gb.y:117.47-58: warning: nonterminal useless in grammar: darwin_entry [-Wother]
 %type <entry>   gb_entry fasta_entry ig_entry darwin_entry
                                               ^^^^^^^^^^^^
gb.y:258.19-61: warning: rule useless in grammar [-Wother]
 darwin_entry	: TEXT {$$ = NULL; /* Not implemented yet */}
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/libraries/sfile /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/DependInfo.cmake --color=
Scanning dependencies of target prime-phylo-sfile
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/build.make src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[  2%] Building C object src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/gbread.c.o
[  2%] Building C object src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/sfile.c.o
[  3%] Building C object src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/gb.tab.c.o
[  3%] Building C object src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/lexer.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile && /usr/bin/cc  -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_sfile_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile -I/<<PKGBUILDDIR>>/src/cxx/libraries/sfile -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo-sfile.dir/sfile.c.o   -c /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile && /usr/bin/cc  -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_sfile_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile -I/<<PKGBUILDDIR>>/src/cxx/libraries/sfile -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo-sfile.dir/gbread.c.o   -c /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/gbread.c
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile && /usr/bin/cc  -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_sfile_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile -I/<<PKGBUILDDIR>>/src/cxx/libraries/sfile -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo-sfile.dir/lexer.c.o   -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/lexer.c
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile && /usr/bin/cc  -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_sfile_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile -I/<<PKGBUILDDIR>>/src/cxx/libraries/sfile -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo-sfile.dir/gb.tab.c.o   -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/gb.tab.c
/<<PKGBUILDDIR>>/src/cxx/libraries/sfile/gbread.c: In function 'main':
/<<PKGBUILDDIR>>/src/cxx/libraries/sfile/gbread.c:17:10: warning: implicit declaration of function 'strcmp' [-Wimplicit-function-declaration]
     if (!strcmp(argv[opt], "-d")) {
          ^
/<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c: In function 'seq_print':
/<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c:265:14: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat=]
       printf("%9d", char_counter + 1);
              ^
/<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c:212:15: warning: variable 'date' set but not used [-Wunused-but-set-variable]
   char *top, *date;
               ^
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/gb.tab.c: In function 'yyparse':
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/gb.tab.c:1237:16: warning: implicit declaration of function 'yylex' [-Wimplicit-function-declaration]
       yychar = yylex ();
                ^
gb.y: In function 'yyerror':
gb.y:291:70: warning: implicit declaration of function 'linenumber' [-Wimplicit-function-declaration]
gb.y: In function 'add_to_seq':
gb.y:402:9: warning: unused variable 'new_buf' [-Wunused-variable]
seqreader.l: In function 'seq_read':
seqreader.l:271:9: warning: unused variable 'code' [-Wunused-variable]
seqreader.l: At top level:
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/lexer.c:1847:17: warning: 'yyunput' defined but not used [-Wunused-function]
     static void yyunput (int c, char * yy_bp )
                 ^
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/lexer.c:1890:16: warning: 'input' defined but not used [-Wunused-function]
     static int input  (void)
                ^
[  4%] Linking C shared library libprime-phylo-sfile.so
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile && /usr/bin/cmake -E cmake_link_script CMakeFiles/prime-phylo-sfile.dir/link.txt --verbose=1
/usr/bin/cc  -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -fexceptions -g  -Wl,-z,relro -shared -Wl,-soname,libprime-phylo-sfile.so -o libprime-phylo-sfile.so CMakeFiles/prime-phylo-sfile.dir/gbread.c.o CMakeFiles/prime-phylo-sfile.dir/sfile.c.o CMakeFiles/prime-phylo-sfile.dir/lexer.c.o CMakeFiles/prime-phylo-sfile.dir/gb.tab.c.o -Wl,-rpath,:::::::::::::::::::: 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[  4%] Built target prime-phylo-sfile
make -f src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/build.make src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[  5%] [BISON][MyParser] Building parser with bison 3.0.4
[  5%] [FLEX][MyScanner] Building scanner with flex 2.6.0
cd /<<PKGBUILDDIR>>/src/cxx/libraries/prime && /usr/bin/flex -Pyytree_ -o/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/lexer.c NHX.l
cd /<<PKGBUILDDIR>>/src/cxx/libraries/prime && /usr/bin/bison -d -y -p yytree_ -d -o /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/NHXparse.c NHXparse.y
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/libraries/prime /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DependInfo.cmake --color=
Scanning dependencies of target prime-phylo
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/build.make src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[  6%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXtree.c.o
[  6%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXnode.c.o
[  7%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXannotation.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/cc  -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/NHXtree.c.o   -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NHXtree.c
[  7%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/lexer.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/cc  -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/NHXnode.c.o   -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NHXnode.c
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/cc  -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/NHXannotation.c.o   -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NHXannotation.c
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/cc  -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/lexer.c.o   -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/lexer.c
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/NHXnode.c: In function 'NHX_debug_print':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/NHXnode.c:155:18: warning: format '%d' expects argument of type 'int', but argument 3 has type 'double' [-Wformat=]
  fprintf(stderr, "BW:\t%d\n", l->arg.t);
                  ^
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/lexer.c:1335:17: warning: 'yyunput' defined but not used [-Wunused-function]
     static void yyunput (int c, char * yy_bp )
                 ^
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/lexer.c:1378:16: warning: 'input' defined but not used [-Wunused-function]
     static int input  (void)
                ^
[  8%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXparse.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/cc  -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/NHXparse.c.o   -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/NHXparse.c
[  8%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/AnError.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/AnError.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/AnError.cc
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/NHXparse.c: In function 'yytree_parse':
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/NHXparse.c:64:25: warning: implicit declaration of function 'yytree_lex' [-Wimplicit-function-declaration]
 #define yylex           yytree_lex
                         ^
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/NHXparse.c:1280:16: note: in expansion of macro 'yylex'
       yychar = yylex ();
                ^
[  9%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Beep.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/Beep.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Beep.cc
NHXparse.y: In function 'read_tree':
NHXparse.y:351:5: warning: implicit declaration of function 'close' [-Wimplicit-function-declaration]
NHXparse.y: In function 'read_tree_string':
NHXparse.y:399:3: warning: implicit declaration of function 'read_from_string' [-Wimplicit-function-declaration]
NHXparse.y:404:3: warning: implicit declaration of function 'close_string_buffer' [-Wimplicit-function-declaration]
[ 10%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BeepOption.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/BeepOption.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepOption.cc
[ 10%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Hacks.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/Hacks.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Hacks.cc
[ 11%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ODESolver.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/ODESolver.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.cc
[ 11%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/PRNG.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/PRNG.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/PRNG.cc
[ 12%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/PrimeOptionMap.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/PrimeOptionMap.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/PrimeOptionMap.cc
[ 12%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ProbabilityModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/ProbabilityModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ProbabilityModel.cc
[ 13%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DiscreteGamma.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/DiscreteGamma.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DiscreteGamma.cc
[ 14%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Probability.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/Probability.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Probability.cc
[ 14%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Tokenizer.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/Tokenizer.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tokenizer.cc
[ 15%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TimeEstimator.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/TimeEstimator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TimeEstimator.cc
[ 15%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BranchSwapping.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/BranchSwapping.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BranchSwapping.cc
[ 16%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DiscTree.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/DiscTree.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DiscTree.cc
[ 17%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeDiscPtMaps.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/EdgeDiscPtMaps.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMaps.cc
[ 17%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeDiscTree.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/EdgeDiscTree.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscTree.cc
[ 18%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochPtMaps.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/EpochPtMaps.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc
[ 18%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochPtSet.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/EpochPtSet.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtSet.cc
[ 19%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochTree.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/EpochTree.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochTree.cc
[ 19%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/InvMRCA.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/InvMRCA.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/InvMRCA.cc
[ 20%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Node.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/Node.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Node.cc
[ 21%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NodeMap.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/NodeMap.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NodeMap.cc
[ 21%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NodeNodeMap.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/NodeNodeMap.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NodeNodeMap.cc
[ 22%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/RandomTreeGenerator.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/RandomTreeGenerator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/RandomTreeGenerator.cc
[ 22%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/StrStrMap.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/StrStrMap.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/StrStrMap.cc
[ 23%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Tree.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/Tree.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.cc
[ 23%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeAnalysis.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/TreeAnalysis.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeAnalysis.cc
[ 24%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeDiscretizer.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/TreeDiscretizer.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizer.cc
[ 25%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeDiscretizers.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/TreeDiscretizers.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizers.cc
[ 25%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/TreeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.cc
[ 26%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeIO.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/TreeIO.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeIO.cc
[ 26%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeInputOutput.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/TreeInputOutput.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeInputOutput.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.cc: In constructor 'beep::TreeMCMC::TreeMCMC(beep::MCMCModel&, beep::Tree&, const Real&)':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.cc:34:23: warning: passing NULL to non-pointer argument 1 of 'beep::RealVector::RealVector(unsigned int)' [-Wconversion-null]
     sprAccPropCnt(0, 0)
                       ^
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.cc:34:23: warning: passing NULL to non-pointer argument 1 of 'beep::RealVector::RealVector(unsigned int)' [-Wconversion-null]
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.cc:34:23: warning: passing NULL to non-pointer argument 1 of 'beep::RealVector::RealVector(unsigned int)' [-Wconversion-null]
[ 27%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeIOTraits.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/TreeIOTraits.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeIOTraits.cc
[ 28%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreePerturbationEvent.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/TreePerturbationEvent.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreePerturbationEvent.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeInputOutput.cc: In member function 'void beep::TreeInputOutput::fromFileStream(FILE*, beep::inputFormats)':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeInputOutput.cc:118:21: warning: converting to non-pointer type 'char' from NULL [-Wconversion-null]
    buf[ bytes_read ]=NULL;
                     ^
[ 28%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ConstRateModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/ConstRateModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ConstRateModel.cc
[ 29%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Density2P_common.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/Density2P_common.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeInputOutput.cc: In member function 'beep::Node* beep::TreeInputOutput::extendBeepTree(beep::Tree&, xmlNodePtr, const beep::TreeIOTraits&, std::vector<beep::SetOfNodes>*, beep::StrStrMap*, std::map<const beep::Node*, beep::Node*>*, std::map<const beep::Node*, unsigned int>*)':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeInputOutput.cc:1049:22: warning: 'idInt' may be used uninitialized in this function [-Wmaybe-uninitialized]
  new_node = S.addNode(l, r, idInt, name);
                      ^
[ 29%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Density2P_positive.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/Density2P_positive.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_positive.cc
[ 30%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Density2PMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/Density2PMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2PMCMC.cc
[ 30%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeRateMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/EdgeRateMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeRateMCMC.cc
[ 31%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeRateMCMC_common.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/EdgeRateMCMC_common.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeRateMCMC_common.cc
[ 32%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeRateModel_common.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/EdgeRateModel_common.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeRateModel_common.cc
[ 32%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeWeightHandler.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/EdgeWeightHandler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightHandler.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeRateMCMC_common.cc: In member function 'void beep::EdgeRateMCMC_common<Templ_EdgeRateModel>::generateRates() [with Templ_EdgeRateModel = beep::gbmRateModel]':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeRateMCMC_common.cc:104:30: warning: unused variable 'fparam' [-Wunused-variable]
                         Real fparam = std::log(rate) -  0.5 * variance * (rtime - 3.0 * ltime);
                              ^
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeRateMCMC_common.cc:105:30: warning: unused variable 'rparam' [-Wunused-variable]
                         Real rparam = variance * (rtime + ltime);
                              ^
[ 33%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeWeightMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/EdgeWeightMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightMCMC.cc
[ 33%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/GammaDensity.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/GammaDensity.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaDensity.cc
[ 34%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/InvGaussDensity.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/InvGaussDensity.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/InvGaussDensity.cc
[ 34%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LengthRateModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/LengthRateModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LengthRateModel.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightMCMC.cc: In member function 'void beep::EdgeWeightMCMC::showCurrentTree()':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightMCMC.cc:106:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (int i = 0; i < t.size(); i++)
                           ^
[ 35%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LogNormDensity.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/LogNormDensity.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LogNormDensity.cc
[ 36%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NormalDensity.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/NormalDensity.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NormalDensity.cc
[ 36%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/UniformDensity.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/UniformDensity.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/UniformDensity.cc
[ 37%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/VarRateModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/VarRateModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/VarRateModel.cc
[ 37%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SiteRateHandler.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/SiteRateHandler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SiteRateHandler.cc
[ 38%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DummyMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/DummyMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DummyMCMC.cc
[ 38%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MCMCModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/MCMCModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MCMCModel.cc
[ 39%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/StdMCMCModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/StdMCMCModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/StdMCMCModel.cc
[ 39%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SimpleMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/SimpleMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SimpleMCMC.cc
[ 40%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MCMCObject.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/MCMCObject.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MCMCObject.cc
[ 41%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SimpleMCMCPostSample.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/SimpleMCMCPostSample.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SimpleMCMCPostSample.cc
[ 41%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SimpleML.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/SimpleML.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SimpleML.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SimpleMCMC.cc: In member function 'virtual void beep::SimpleMCMC::iterate(unsigned int, unsigned int)':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SimpleMCMC.cc:78:14: warning: variable 'check_number_nonupdate' set but not used [-Wunused-but-set-variable]
     unsigned check_number_nonupdate = 0;
              ^
[ 42%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/mcmc/MCMCSampler.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/mcmc/MCMCSampler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/mcmc/MCMCSampler.cc
[ 43%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/mcmc/GSRSampler.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/mcmc/GSRSampler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/mcmc/GSRSampler.cc
[ 43%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/mcmc/PosteriorSampler.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/mcmc/PosteriorSampler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/mcmc/PosteriorSampler.cc
[ 44%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SimpleObserver.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/SimpleObserver.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SimpleObserver.cc
[ 44%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MpiMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/MpiMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MpiMCMC.cc
[ 45%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MultiGSR.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/MultiGSR.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MultiGSR.cc
[ 45%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MpiMultiGSR.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/MpiMultiGSR.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MpiMultiGSR.cc
[ 46%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BDTreeGenerator.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/BDTreeGenerator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BDTreeGenerator.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/MpiMultiGSR.cc: In member function 'virtual beep::Probability beep::MpiMultiGSR::calcDataProbability(unsigned int)':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/MpiMultiGSR.cc:337:41: warning: operation on 'i' may be undefined [-Wsequence-point]
    p[++i] = geneFams[i]->initStateProb();//updateDataProbability();
                                         ^
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/MpiMultiGSR.cc:337:41: warning: operation on 'i' may be undefined [-Wsequence-point]
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/MpiMultiGSR.cc:337:41: warning: operation on 'i' may be undefined [-Wsequence-point]
[ 47%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BirthDeathMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/BirthDeathMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathMCMC.cc
[ 47%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BirthDeathProbs.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/BirthDeathProbs.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathProbs.cc
[ 48%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/CongruentGuestTreeTimeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/CongruentGuestTreeTimeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/CongruentGuestTreeTimeMCMC.cc
[ 48%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DiscBirthDeathProbs.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/DiscBirthDeathProbs.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DiscBirthDeathProbs.cc
[ 49%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeDiscBDMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/EdgeDiscBDMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscBDMCMC.cc
[ 49%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeDiscBDProbs.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/EdgeDiscBDProbs.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscBDProbs.cc
[ 50%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeDiscGSR.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/EdgeDiscGSR.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc
[ 51%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochBDTMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/EpochBDTMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTMCMC.cc
[ 51%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochBDTProbs.cc.o
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc:8:0:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.hh: In constructor 'beep::EdgeDiscGSR::EdgeDiscGSR(beep::Tree*, beep::EdgeDiscTree*, beep::StrStrMap*, beep::Density2P*, beep::EdgeDiscBDProbs*, beep::UnsignedVector*)':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.hh:588:14: warning: 'beep::EdgeDiscGSR::m_calculatedAtAndBelow' will be initialized after [-Wreorder]
         bool m_calculatedAtAndBelow;
              ^
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.hh:583:14: warning:   'bool beep::EdgeDiscGSR::m_calculatedAtBars' [-Wreorder]
         bool m_calculatedAtBars;
              ^
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc:23:5: warning:   when initialized here [-Wreorder]
     EdgeDiscGSR::EdgeDiscGSR(Tree* G,
     ^
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/EpochBDTProbs.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc: In member function 'void beep::EdgeDiscGSR::convertDensitiesToProbabilities()':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc:475:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (int i = 0; i < m_G->getNumberOfNodes(); i++) {
                           ^
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc:485:27: warning: variable 'xpt' set but not used [-Wunused-but-set-variable]
                     Point xpt = x.getPt();
                           ^
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc:525:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (int i = 0; i < m_G->getNumberOfNodes(); i++) {
                           ^
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc:528:19: warning: unused variable 'parent' [-Wunused-variable]
             Node *parent = u->getParent();
                   ^
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc: In member function 'beep::Probability beep::EdgeDiscGSR::getTotalPlacementDensity(const beep::Node*)':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc:897:18: warning: unused variable 'timeStep' [-Wunused-variable]
             Real timeStep = u->isLeaf() ? 1.0 : m_DS->getTimestep(xPoint.first);
                  ^
[ 52%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochDLTRS.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/EpochDLTRS.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochDLTRS.cc
[ 52%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/GammaMap.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/GammaMap.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaMap.cc
[ 53%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/GuestTreeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/GuestTreeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GuestTreeModel.cc
[ 54%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EnumerateReconciliationModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/EnumerateReconciliationModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EnumerateReconciliationModel.cc
[ 54%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/fastGEM_BirthDeathMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/fastGEM_BirthDeathMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM_BirthDeathMCMC.cc
[ 55%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/fastGEM_BirthDeathProbs.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/fastGEM_BirthDeathProbs.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM_BirthDeathProbs.cc
[ 55%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/fastGEM.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/fastGEM.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc
[ 56%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LambdaMap.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/LambdaMap.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LambdaMap.cc
[ 56%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MaxReconciledTreeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/MaxReconciledTreeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MaxReconciledTreeModel.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc: In member function 'unsigned int beep::fastGEM::calcMaxProb(unsigned int)':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc:136:14: warning: variable 'topRateProb' set but not used [-Wunused-but-set-variable]
  Probability topRateProb = df->operator()(rate);
              ^
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc: In member function 'void beep::fastGEM::printSa()':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc:1298:10: warning: variable 'zeroTotalQuotient' set but not used [-Wunused-but-set-variable]
     Real zeroTotalQuotient = 0.0;
          ^
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc: In member function 'void beep::fastGEM::printLb()':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc:1325:10: warning: variable 'zeroTotalQuotient' set but not used [-Wunused-but-set-variable]
     Real zeroTotalQuotient = 0.0;
          ^
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc: In member function 'void beep::fastGEM::printLt()':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc:1356:10: warning: variable 'zeroTotalQuotient' set but not used [-Wunused-but-set-variable]
     Real zeroTotalQuotient = 0.0;
          ^
[ 57%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/PerturbationObservable.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/PerturbationObservable.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/PerturbationObservable.cc
[ 58%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciledTreeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/ReconciledTreeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciledTreeModel.cc
[ 58%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciledTreeTimeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/ReconciledTreeTimeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciledTreeTimeModel.cc
[ 59%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciledTreeTimeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/ReconciledTreeTimeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciledTreeTimeMCMC.cc
[ 59%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/ReconciliationModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationModel.cc
[ 60%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationSampler.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/ReconciliationSampler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationSampler.cc
[ 60%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationTimeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/ReconciliationTimeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTimeModel.cc
[ 61%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationTimeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/ReconciliationTimeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTimeMCMC.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTimeModel.cc: In member function 'std::__cxx11::string beep::ReconciliationTimeModel::table4os() const':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTimeModel.cc:319:58: warning: typedef 'MapIter' locally defined but not used [-Wunused-local-typedefs]
     typedef std::map<unsigned, unsigned>::const_iterator MapIter;
                                                          ^
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationSampler.cc: In member function 'void beep::ReconciliationSampler::setAttributesAndProbabilities()':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationSampler.cc:161:17: warning: variable 'p' set but not used [-Wunused-but-set-variable]
     Probability p = calculateDataProbability();
                 ^
[ 62%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationTimeSampler.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/ReconciliationTimeSampler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTimeSampler.cc
[ 62%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationTreeGenerator.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/ReconciliationTreeGenerator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTreeGenerator.cc
[ 63%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DLRSOrthoCalculator.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/DLRSOrthoCalculator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DLRSOrthoCalculator.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTimeSampler.cc: In member function 'const string beep::ReconciliationTimeSampler::table4os() const':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTimeSampler.cc:422:58: warning: typedef 'MapIter' locally defined but not used [-Wunused-local-typedefs]
     typedef std::map<unsigned, unsigned>::const_iterator MapIter;
                                                          ^
[ 63%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SetOfNodes.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/SetOfNodes.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SetOfNodes.cc
[ 64%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TopTimeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/TopTimeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TopTimeMCMC.cc
[ 65%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridBranchSwapping.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/HybridBranchSwapping.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridBranchSwapping.cc
[ 65%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridTree.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/HybridTree.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.cc
[ 66%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridTreeIO.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/HybridTreeIO.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeIO.cc
[ 66%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridTreeInputOutput.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/HybridTreeInputOutput.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeInputOutput.cc
[ 67%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BDHybridTreeGenerator.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/BDHybridTreeGenerator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BDHybridTreeGenerator.cc
[ 67%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BirthDeathInHybridProbs.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/BirthDeathInHybridProbs.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathInHybridProbs.cc
[ 68%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BirthDeathInHybridMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/BirthDeathInHybridMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathInHybridMCMC.cc
[ 69%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridBDTreeGenerator.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/HybridBDTreeGenerator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridBDTreeGenerator.cc
[ 69%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridGuestTreeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/HybridGuestTreeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridGuestTreeMCMC.cc
[ 70%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridGuestTreeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/HybridGuestTreeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridGuestTreeModel.cc
[ 70%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridHostTreeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/HybridHostTreeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridHostTreeMCMC.cc
[ 71%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridHostTreeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/HybridHostTreeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridHostTreeModel.cc
[ 71%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EnumHybridGuestTreeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/EnumHybridGuestTreeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EnumHybridGuestTreeMCMC.cc
[ 72%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EnumHybridGuestTreeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/EnumHybridGuestTreeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EnumHybridGuestTreeModel.cc
[ 73%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/CacheSubstitutionModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/CacheSubstitutionModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/CacheSubstitutionModel.cc
[ 73%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/FastCacheSubstitutionModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/FastCacheSubstitutionModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/FastCacheSubstitutionModel.cc
[ 74%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MatrixCache.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/MatrixCache.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MatrixCache.cc
[ 74%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TransitionHandler.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/TransitionHandler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TransitionHandler.cc
In file included from /usr/include/c++/5/ext/hash_map:60:0,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/FastCacheSubstitutionModel.hh:8,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/FastCacheSubstitutionModel.cc:1:
/usr/include/c++/5/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
 #warning \
  ^
[ 75%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MatrixTransitionHandler.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/MatrixTransitionHandler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MatrixTransitionHandler.cc
[ 75%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SeqIO.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/SeqIO.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SeqIO.cc
[ 76%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SequenceGenerator.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/SequenceGenerator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceGenerator.cc
[ 77%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SequenceType.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/SequenceType.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceType.cc
[ 77%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SequenceData.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/SequenceData.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceData.cc
[ 78%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SubstitutionModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/SubstitutionModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SubstitutionModel.cc
[ 78%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SubstitutionMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/SubstitutionMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SubstitutionMCMC.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceData.cc: In member function 'std::map<char, double> beep::SequenceData::getBaseFrequencies()':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceData.cc:288:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             for (int i = 0; i < seqType.alphabetSize(); i++)
                               ^
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceData.cc:303:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                 for (int j = 0; j < seq.length(); j++) {
                                   ^
[ 79%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LA_Vector.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/LA_Vector.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LA_Vector.cc
[ 80%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LA_Matrix.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/LA_Matrix.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LA_Matrix.cc
[ 80%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LA_DiagonalMatrix.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/openmpi/include/openmpi/openmpi/ompi/mpi/cxx  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g -fPIC   -o CMakeFiles/prime-phylo.dir/LA_DiagonalMatrix.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LA_DiagonalMatrix.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/LA_Matrix.cc: In constructor 'beep::LA_Matrix::LA_Matrix()':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/LA_Matrix.cc:19:5: warning: 'beep::LA_Matrix::dim' is initialized with itself [-Winit-self]
     LA_Matrix::LA_Matrix()
     ^
[ 81%] Linking CXX shared library libprime-phylo.so
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/cmake -E cmake_link_script CMakeFiles/prime-phylo.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g  -Wl,-z,relro -shared -Wl,-soname,libprime-phylo.so -o libprime-phylo.so CMakeFiles/prime-phylo.dir/NHXnode.c.o CMakeFiles/prime-phylo.dir/NHXtree.c.o CMakeFiles/prime-phylo.dir/NHXannotation.c.o CMakeFiles/prime-phylo.dir/lexer.c.o CMakeFiles/prime-phylo.dir/NHXparse.c.o CMakeFiles/prime-phylo.dir/AnError.cc.o CMakeFiles/prime-phylo.dir/Beep.cc.o CMakeFiles/prime-phylo.dir/BeepOption.cc.o CMakeFiles/prime-phylo.dir/Hacks.cc.o CMakeFiles/prime-phylo.dir/ODESolver.cc.o CMakeFiles/prime-phylo.dir/PRNG.cc.o CMakeFiles/prime-phylo.dir/PrimeOptionMap.cc.o CMakeFiles/prime-phylo.dir/ProbabilityModel.cc.o CMakeFiles/prime-phylo.dir/DiscreteGamma.cc.o CMakeFiles/prime-phylo.dir/Probability.cc.o CMakeFiles/prime-phylo.dir/Tokenizer.cc.o CMakeFiles/prime-phylo.dir/TimeEstimator.cc.o CMakeFiles/prime-phylo.dir/BranchSwapping.cc.o CMakeFiles/prime-phylo.dir/DiscTree.cc.o CMakeFiles/prime-phylo.dir/EdgeDiscPtMaps.cc.o CMakeFiles/prime-phylo.dir/EdgeDiscTree.cc.o CMakeFiles/prime-phylo.dir/EpochPtMaps.cc.o CMakeFiles/prime-phylo.dir/EpochPtSet.cc.o CMakeFiles/prime-phylo.dir/EpochTree.cc.o CMakeFiles/prime-phylo.dir/InvMRCA.cc.o CMakeFiles/prime-phylo.dir/Node.cc.o CMakeFiles/prime-phylo.dir/NodeMap.cc.o CMakeFiles/prime-phylo.dir/NodeNodeMap.cc.o CMakeFiles/prime-phylo.dir/RandomTreeGenerator.cc.o CMakeFiles/prime-phylo.dir/StrStrMap.cc.o CMakeFiles/prime-phylo.dir/Tree.cc.o CMakeFiles/prime-phylo.dir/TreeAnalysis.cc.o CMakeFiles/prime-phylo.dir/TreeDiscretizer.cc.o CMakeFiles/prime-phylo.dir/TreeDiscretizers.cc.o CMakeFiles/prime-phylo.dir/TreeMCMC.cc.o CMakeFiles/prime-phylo.dir/TreeIO.cc.o CMakeFiles/prime-phylo.dir/TreeInputOutput.cc.o CMakeFiles/prime-phylo.dir/TreeIOTraits.cc.o CMakeFiles/prime-phylo.dir/TreePerturbationEvent.cc.o CMakeFiles/prime-phylo.dir/ConstRateModel.cc.o CMakeFiles/prime-phylo.dir/Density2P_common.cc.o CMakeFiles/prime-phylo.dir/Density2P_positive.cc.o CMakeFiles/prime-phylo.dir/Density2PMCMC.cc.o CMakeFiles/prime-phylo.dir/EdgeRateMCMC.cc.o CMakeFiles/prime-phylo.dir/EdgeRateMCMC_common.cc.o CMakeFiles/prime-phylo.dir/EdgeRateModel_common.cc.o CMakeFiles/prime-phylo.dir/EdgeWeightHandler.cc.o CMakeFiles/prime-phylo.dir/EdgeWeightMCMC.cc.o CMakeFiles/prime-phylo.dir/GammaDensity.cc.o CMakeFiles/prime-phylo.dir/InvGaussDensity.cc.o CMakeFiles/prime-phylo.dir/LengthRateModel.cc.o CMakeFiles/prime-phylo.dir/LogNormDensity.cc.o CMakeFiles/prime-phylo.dir/NormalDensity.cc.o CMakeFiles/prime-phylo.dir/UniformDensity.cc.o CMakeFiles/prime-phylo.dir/VarRateModel.cc.o CMakeFiles/prime-phylo.dir/SiteRateHandler.cc.o CMakeFiles/prime-phylo.dir/DummyMCMC.cc.o CMakeFiles/prime-phylo.dir/MCMCModel.cc.o CMakeFiles/prime-phylo.dir/StdMCMCModel.cc.o CMakeFiles/prime-phylo.dir/MCMCObject.cc.o CMakeFiles/prime-phylo.dir/SimpleMCMC.cc.o CMakeFiles/prime-phylo.dir/SimpleMCMCPostSample.cc.o CMakeFiles/prime-phylo.dir/SimpleML.cc.o CMakeFiles/prime-phylo.dir/mcmc/MCMCSampler.cc.o CMakeFiles/prime-phylo.dir/mcmc/GSRSampler.cc.o CMakeFiles/prime-phylo.dir/mcmc/PosteriorSampler.cc.o CMakeFiles/prime-phylo.dir/SimpleObserver.cc.o CMakeFiles/prime-phylo.dir/MpiMCMC.cc.o CMakeFiles/prime-phylo.dir/MultiGSR.cc.o CMakeFiles/prime-phylo.dir/MpiMultiGSR.cc.o CMakeFiles/prime-phylo.dir/BDTreeGenerator.cc.o CMakeFiles/prime-phylo.dir/BirthDeathMCMC.cc.o CMakeFiles/prime-phylo.dir/BirthDeathProbs.cc.o CMakeFiles/prime-phylo.dir/CongruentGuestTreeTimeMCMC.cc.o CMakeFiles/prime-phylo.dir/DiscBirthDeathProbs.cc.o CMakeFiles/prime-phylo.dir/EdgeDiscBDMCMC.cc.o CMakeFiles/prime-phylo.dir/EdgeDiscBDProbs.cc.o CMakeFiles/prime-phylo.dir/EdgeDiscGSR.cc.o CMakeFiles/prime-phylo.dir/EpochBDTMCMC.cc.o CMakeFiles/prime-phylo.dir/EpochBDTProbs.cc.o CMakeFiles/prime-phylo.dir/EpochDLTRS.cc.o CMakeFiles/prime-phylo.dir/GammaMap.cc.o CMakeFiles/prime-phylo.dir/GuestTreeModel.cc.o CMakeFiles/prime-phylo.dir/EnumerateReconciliationModel.cc.o CMakeFiles/prime-phylo.dir/fastGEM_BirthDeathMCMC.cc.o CMakeFiles/prime-phylo.dir/fastGEM_BirthDeathProbs.cc.o CMakeFiles/prime-phylo.dir/fastGEM.cc.o CMakeFiles/prime-phylo.dir/LambdaMap.cc.o CMakeFiles/prime-phylo.dir/MaxReconciledTreeModel.cc.o CMakeFiles/prime-phylo.dir/PerturbationObservable.cc.o CMakeFiles/prime-phylo.dir/ReconciledTreeModel.cc.o CMakeFiles/prime-phylo.dir/ReconciledTreeTimeModel.cc.o CMakeFiles/prime-phylo.dir/ReconciledTreeTimeMCMC.cc.o CMakeFiles/prime-phylo.dir/ReconciliationModel.cc.o CMakeFiles/prime-phylo.dir/ReconciliationSampler.cc.o CMakeFiles/prime-phylo.dir/ReconciliationTimeModel.cc.o CMakeFiles/prime-phylo.dir/ReconciliationTimeMCMC.cc.o CMakeFiles/prime-phylo.dir/ReconciliationTimeSampler.cc.o CMakeFiles/prime-phylo.dir/ReconciliationTreeGenerator.cc.o CMakeFiles/prime-phylo.dir/DLRSOrthoCalculator.cc.o CMakeFiles/prime-phylo.dir/SetOfNodes.cc.o CMakeFiles/prime-phylo.dir/TopTimeMCMC.cc.o CMakeFiles/prime-phylo.dir/HybridBranchSwapping.cc.o CMakeFiles/prime-phylo.dir/HybridTree.cc.o CMakeFiles/prime-phylo.dir/HybridTreeIO.cc.o CMakeFiles/prime-phylo.dir/HybridTreeInputOutput.cc.o CMakeFiles/prime-phylo.dir/BDHybridTreeGenerator.cc.o CMakeFiles/prime-phylo.dir/BirthDeathInHybridProbs.cc.o CMakeFiles/prime-phylo.dir/BirthDeathInHybridMCMC.cc.o CMakeFiles/prime-phylo.dir/HybridBDTreeGenerator.cc.o CMakeFiles/prime-phylo.dir/HybridGuestTreeMCMC.cc.o CMakeFiles/prime-phylo.dir/HybridGuestTreeModel.cc.o CMakeFiles/prime-phylo.dir/HybridHostTreeMCMC.cc.o CMakeFiles/prime-phylo.dir/HybridHostTreeModel.cc.o CMakeFiles/prime-phylo.dir/EnumHybridGuestTreeMCMC.cc.o CMakeFiles/prime-phylo.dir/EnumHybridGuestTreeModel.cc.o CMakeFiles/prime-phylo.dir/CacheSubstitutionModel.cc.o CMakeFiles/prime-phylo.dir/FastCacheSubstitutionModel.cc.o CMakeFiles/prime-phylo.dir/MatrixCache.cc.o CMakeFiles/prime-phylo.dir/TransitionHandler.cc.o CMakeFiles/prime-phylo.dir/MatrixTransitionHandler.cc.o CMakeFiles/prime-phylo.dir/SeqIO.cc.o CMakeFiles/prime-phylo.dir/SequenceGenerator.cc.o CMakeFiles/prime-phylo.dir/SequenceType.cc.o CMakeFiles/prime-phylo.dir/SequenceData.cc.o CMakeFiles/prime-phylo.dir/SubstitutionModel.cc.o CMakeFiles/prime-phylo.dir/SubstitutionMCMC.cc.o CMakeFiles/prime-phylo.dir/LA_Vector.cc.o CMakeFiles/prime-phylo.dir/LA_Matrix.cc.o CMakeFiles/prime-phylo.dir/LA_DiagonalMatrix.cc.o  -L/usr/lib/liblapack.so  -L/usr/lib/libblas.so -llapack -lblas -lxml2 /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -lboost_mpi -lboost_serialization ../sfile/libprime-phylo-sfile.so -Wl,-rpath,/usr/lib/liblapack.so:/usr/lib/libblas.so:/usr/lib/openmpi/lib:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile: 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 81%] Built target prime-phylo
make -f src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/build.make src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/depend
make -f src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/build.make src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/depend
make -f src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/build.make src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/depend
make -f src/cxx/tools/treesize/CMakeFiles/treesize.dir/build.make src/cxx/tools/treesize/CMakeFiles/treesize.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/applications/primeDLRS /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDLRS /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/applications/primeDTLSR /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDTLSR /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/DependInfo.cmake --color=
[ 82%] Generating cmdline.c, cmdline.h
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize && /usr/bin/gengetopt -i /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize/cmdline.ggo --file-name=cmdline --output-dir=/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize
[ 83%] Generating cmdline.c, cmdline.h
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM && /usr/bin/gengetopt -i /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM/cmdline.ggo --file-name=cmdline --output-dir=/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/treesize /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize/CMakeFiles/treesize.dir/DependInfo.cmake --color=
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/applications/primeGEM /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/DependInfo.cmake --color=
Scanning dependencies of target primeDLRS
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/build.make src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/build
Scanning dependencies of target primeDTLSR
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/build.make src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Scanning dependencies of target treesize
[ 83%] Building CXX object src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/primeDLRS.cc.o
[ 83%] Building CXX object src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/idolatrous.cc.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/tools/treesize/CMakeFiles/treesize.dir/build.make src/cxx/tools/treesize/CMakeFiles/treesize.dir/build
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDTLSR && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDTLSR -I/<<PKGBUILDDIR>>/src/cxx/applications/primeDTLSR -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g   -o CMakeFiles/primeDTLSR.dir/idolatrous.cc.o -c /<<PKGBUILDDIR>>/src/cxx/applications/primeDTLSR/idolatrous.cc
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDLRS && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDLRS -I/<<PKGBUILDDIR>>/src/cxx/applications/primeDLRS -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g   -o CMakeFiles/primeDLRS.dir/primeDLRS.cc.o -c /<<PKGBUILDDIR>>/src/cxx/applications/primeDLRS/primeDLRS.cc
Scanning dependencies of target primeGEM
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/build.make src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 83%] Building CXX object src/cxx/tools/treesize/CMakeFiles/treesize.dir/treesize.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize -I/<<PKGBUILDDIR>>/src/cxx/tools/treesize -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g   -o CMakeFiles/treesize.dir/treesize.cc.o -c /<<PKGBUILDDIR>>/src/cxx/tools/treesize/treesize.cc
[ 83%] Building CXX object src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/troyo.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM -I/<<PKGBUILDDIR>>/src/cxx/applications/primeGEM -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g   -o CMakeFiles/primeGEM.dir/troyo.cc.o -c /<<PKGBUILDDIR>>/src/cxx/applications/primeGEM/troyo.cc
/<<PKGBUILDDIR>>/src/cxx/tools/treesize/treesize.cc: In function 'int main(int, char**)':
/<<PKGBUILDDIR>>/src/cxx/tools/treesize/treesize.cc:55:13: warning: enumeration value 'input_format__NULL' not handled in switch [-Wswitch]
       switch(args_info.input_format_arg)
             ^
[ 84%] Building C object src/cxx/tools/treesize/CMakeFiles/treesize.dir/cmdline.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize && /usr/bin/cc  -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize -I/<<PKGBUILDDIR>>/src/cxx/tools/treesize -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -fexceptions -g   -o CMakeFiles/treesize.dir/cmdline.c.o   -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize/cmdline.c
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize/cmdline.c: In function 'update_arg':
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize/cmdline.c:395:9: warning: variable 'stop_char' set but not used [-Wunused-but-set-variable]
   char *stop_char = 0;
         ^
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize/cmdline.c: In function 'cmdline_parser_internal':
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize/cmdline.c:483:7: warning: variable 'check_required' set but not used [-Wunused-but-set-variable]
   int check_required;
       ^
[ 85%] Linking CXX executable treesize
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize && /usr/bin/cmake -E cmake_link_script CMakeFiles/treesize.dir/link.txt --verbose=1
/usr/bin/c++   -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g   -Wl,-z,relro CMakeFiles/treesize.dir/treesize.cc.o CMakeFiles/treesize.dir/cmdline.c.o  -o treesize -rdynamic ../../libraries/prime/libprime-phylo.so -llapack -lblas -lxml2 /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -lboost_mpi -lboost_serialization ../../libraries/sfile/libprime-phylo-sfile.so -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime:/usr/lib/openmpi/lib:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile: 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 85%] Built target treesize
make -f src/cxx/tools/showtree/CMakeFiles/showtree.dir/build.make src/cxx/tools/showtree/CMakeFiles/showtree.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 85%] Generating cmdline.c, cmdline.h
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree && /usr/bin/gengetopt -i /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree/cmdline.ggo --file-name=cmdline --output-dir=/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/showtree /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree/CMakeFiles/showtree.dir/DependInfo.cmake --color=
Scanning dependencies of target showtree
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/tools/showtree/CMakeFiles/showtree.dir/build.make src/cxx/tools/showtree/CMakeFiles/showtree.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 86%] Building CXX object src/cxx/tools/showtree/CMakeFiles/showtree.dir/showtree.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree -I/<<PKGBUILDDIR>>/src/cxx/tools/showtree -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g   -o CMakeFiles/showtree.dir/showtree.cc.o -c /<<PKGBUILDDIR>>/src/cxx/tools/showtree/showtree.cc
/<<PKGBUILDDIR>>/src/cxx/tools/showtree/showtree.cc: In function 'void outputSingleTree(beep::Tree&, beep::TreeIOTraits&, gengetopt_args_info&)':
/<<PKGBUILDDIR>>/src/cxx/tools/showtree/showtree.cc:30:20: warning: variable 'nw' set but not used [-Wunused-but-set-variable]
   bool et, nt, bl, nw;
                    ^
/<<PKGBUILDDIR>>/src/cxx/tools/showtree/showtree.cc: In function 'int main(int, char**)':
/<<PKGBUILDDIR>>/src/cxx/tools/showtree/showtree.cc:174:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
        if(args_info.tree_number_arg >= Tvec.size())
                                     ^
[ 86%] Building C object src/cxx/tools/showtree/CMakeFiles/showtree.dir/cmdline.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree && /usr/bin/cc  -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree -I/<<PKGBUILDDIR>>/src/cxx/tools/showtree -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -fexceptions -g   -o CMakeFiles/showtree.dir/cmdline.c.o   -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree/cmdline.c
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree/cmdline.c: In function 'cmdline_parser_internal':
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree/cmdline.c:554:7: warning: variable 'check_required' set but not used [-Wunused-but-set-variable]
   int check_required;
       ^
[ 87%] Linking CXX executable showtree
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree && /usr/bin/cmake -E cmake_link_script CMakeFiles/showtree.dir/link.txt --verbose=1
/usr/bin/c++   -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g   -Wl,-z,relro CMakeFiles/showtree.dir/showtree.cc.o CMakeFiles/showtree.dir/cmdline.c.o  -o showtree -rdynamic ../../libraries/prime/libprime-phylo.so -llapack -lblas -lxml2 /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -lboost_mpi -lboost_serialization ../../libraries/sfile/libprime-phylo-sfile.so -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime:/usr/lib/openmpi/lib:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile: 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 87%] Built target showtree
make -f src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/build.make src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 88%] Generating cmdline.c, cmdline.h
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile && /usr/bin/gengetopt -i /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile/cmdline.ggo --file-name=cmdline --output-dir=/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/reconcile /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/DependInfo.cmake --color=
Scanning dependencies of target reconcile
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/build.make src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 89%] Building CXX object src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/Rootalyzer.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile -I/<<PKGBUILDDIR>>/src/cxx/tools/reconcile -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g   -o CMakeFiles/reconcile.dir/Rootalyzer.cc.o -c /<<PKGBUILDDIR>>/src/cxx/tools/reconcile/Rootalyzer.cc
[ 90%] Building C object src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/cmdline.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM && /usr/bin/cc  -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM -I/<<PKGBUILDDIR>>/src/cxx/applications/primeGEM -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -fexceptions -g   -o CMakeFiles/primeGEM.dir/cmdline.c.o   -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM/cmdline.c
[ 90%] Linking CXX executable primeGEM
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM && /usr/bin/cmake -E cmake_link_script CMakeFiles/primeGEM.dir/link.txt --verbose=1
/usr/bin/c++   -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g   -Wl,-z,relro CMakeFiles/primeGEM.dir/troyo.cc.o CMakeFiles/primeGEM.dir/cmdline.c.o  -o primeGEM -rdynamic ../../libraries/prime/libprime-phylo.so -llapack -lblas -lxml2 /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -lboost_mpi -lboost_serialization ../../libraries/sfile/libprime-phylo-sfile.so -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime:/usr/lib/openmpi/lib:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile: 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 90%] Built target primeGEM
[ 90%] Building CXX object src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/reconcile.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile -I/<<PKGBUILDDIR>>/src/cxx/tools/reconcile -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g   -o CMakeFiles/reconcile.dir/reconcile.cc.o -c /<<PKGBUILDDIR>>/src/cxx/tools/reconcile/reconcile.cc
make -f src/cxx/tools/reroot/CMakeFiles/reroot.dir/build.make src/cxx/tools/reroot/CMakeFiles/reroot.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 91%] Generating cmdline.c, cmdline.h
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot && /usr/bin/gengetopt -i /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot/cmdline.ggo --file-name=cmdline --output-dir=/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/reroot /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot/CMakeFiles/reroot.dir/DependInfo.cmake --color=
Scanning dependencies of target reroot
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/tools/reroot/CMakeFiles/reroot.dir/build.make src/cxx/tools/reroot/CMakeFiles/reroot.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 91%] Building CXX object src/cxx/tools/reroot/CMakeFiles/reroot.dir/reroot.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot -I/<<PKGBUILDDIR>>/src/cxx/tools/reroot -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g   -o CMakeFiles/reroot.dir/reroot.cc.o -c /<<PKGBUILDDIR>>/src/cxx/tools/reroot/reroot.cc
[ 92%] Linking CXX executable primeDLRS
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDLRS && /usr/bin/cmake -E cmake_link_script CMakeFiles/primeDLRS.dir/link.txt --verbose=1
/usr/bin/c++   -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g   -Wl,-z,relro CMakeFiles/primeDLRS.dir/primeDLRS.cc.o  -o primeDLRS -rdynamic ../../libraries/prime/libprime-phylo.so ../../libraries/sfile/libprime-phylo-sfile.so -llapack -lblas -lxml2 /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -lboost_mpi -lboost_serialization -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile:/usr/lib/openmpi/lib: 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 92%] Built target primeDLRS
[ 93%] Building C object src/cxx/tools/reroot/CMakeFiles/reroot.dir/cmdline.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot && /usr/bin/cc  -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot -I/<<PKGBUILDDIR>>/src/cxx/tools/reroot -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -fexceptions -g   -o CMakeFiles/reroot.dir/cmdline.c.o   -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot/cmdline.c
[ 94%] Linking CXX executable primeDTLSR
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDTLSR && /usr/bin/cmake -E cmake_link_script CMakeFiles/primeDTLSR.dir/link.txt --verbose=1
/usr/bin/c++   -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g   -Wl,-z,relro CMakeFiles/primeDTLSR.dir/idolatrous.cc.o  -o primeDTLSR -rdynamic ../../libraries/prime/libprime-phylo.so ../../libraries/sfile/libprime-phylo-sfile.so -llapack -lblas -lxml2 /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -lboost_mpi -lboost_serialization -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile:/usr/lib/openmpi/lib: 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 94%] Built target primeDTLSR
[ 95%] Building C object src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/cmdline.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile && /usr/bin/cc  -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile -I/<<PKGBUILDDIR>>/src/cxx/tools/reconcile -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -fexceptions -g   -o CMakeFiles/reconcile.dir/cmdline.c.o   -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile/cmdline.c
make -f src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/build.make src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 95%] Generating cmdline.c, cmdline.h
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames && /usr/bin/gengetopt -i /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames/cmdline.ggo --file-name=cmdline --output-dir=/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/DependInfo.cmake --color=
/<<PKGBUILDDIR>>/src/cxx/tools/reconcile/reconcile.cc: In function 'int main(int, char**)':
/<<PKGBUILDDIR>>/src/cxx/tools/reconcile/reconcile.cc:37:21: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   char *ofilename = "mpr.out";
                     ^
Scanning dependencies of target tree2leafnames
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/build.make src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/<<PKGBUILDDIR>>/src/cxx/tools/reconcile/reconcile.cc: In function 'void populateGsMap(beep::Tree, beep::StrStrMap&)':
/<<PKGBUILDDIR>>/src/cxx/tools/reconcile/reconcile.cc:157:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (int i = 0; i < gtree.getNumberOfNodes(); i++) {
                       ^
[ 96%] Building CXX object src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/tree2leafnames.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames -I/<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g   -o CMakeFiles/tree2leafnames.dir/tree2leafnames.cc.o -c /<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames/tree2leafnames.cc
[ 97%] Building C object src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/cmdline.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames && /usr/bin/cc  -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames -I/<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -fexceptions -g   -o CMakeFiles/tree2leafnames.dir/cmdline.c.o   -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames/cmdline.c
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames/cmdline.c: In function 'update_arg':
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames/cmdline.c:388:9: warning: variable 'stop_char' set but not used [-Wunused-but-set-variable]
   char *stop_char = 0;
         ^
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames/cmdline.c: In function 'cmdline_parser_internal':
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames/cmdline.c:472:7: warning: variable 'check_required' set but not used [-Wunused-but-set-variable]
   int check_required;
       ^
make -f src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/build.make src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 97%] Generating cmdline.c, cmdline.h
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw && /usr/bin/gengetopt -i /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw/cmdline.ggo --file-name=cmdline --output-dir=/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/chainsaw /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/DependInfo.cmake --color=
/<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames/tree2leafnames.cc: In function 'int main(int, char**)':
/<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames/tree2leafnames.cc:51:11: warning: enumeration value 'input_format__NULL' not handled in switch [-Wswitch]
     switch(args_info.input_format_arg)
           ^
Scanning dependencies of target chainsaw
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/build.make src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 98%] Building CXX object src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/chainsaw.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw && /usr/bin/c++   -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw -I/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g   -o CMakeFiles/chainsaw.dir/chainsaw.cc.o -c /<<PKGBUILDDIR>>/src/cxx/tools/chainsaw/chainsaw.cc
[ 98%] Linking CXX executable tree2leafnames
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree2leafnames.dir/link.txt --verbose=1
/usr/bin/c++   -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g   -Wl,-z,relro CMakeFiles/tree2leafnames.dir/tree2leafnames.cc.o CMakeFiles/tree2leafnames.dir/cmdline.c.o  -o tree2leafnames -rdynamic ../../libraries/prime/libprime-phylo.so -llapack -lblas -lxml2 /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -lboost_mpi -lboost_serialization ../../libraries/sfile/libprime-phylo-sfile.so -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime:/usr/lib/openmpi/lib:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile: 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 98%] Linking CXX executable reconcile
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile && /usr/bin/cmake -E cmake_link_script CMakeFiles/reconcile.dir/link.txt --verbose=1
[ 98%] Built target tree2leafnames
/usr/bin/c++   -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g   -Wl,-z,relro CMakeFiles/reconcile.dir/Rootalyzer.cc.o CMakeFiles/reconcile.dir/reconcile.cc.o CMakeFiles/reconcile.dir/cmdline.c.o  -o reconcile -rdynamic ../../libraries/prime/libprime-phylo.so -llapack -lblas -lxml2 /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -lboost_mpi -lboost_serialization ../../libraries/sfile/libprime-phylo-sfile.so -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime:/usr/lib/openmpi/lib:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile: 
[ 98%] Building C object src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/cmdline.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw && /usr/bin/cc  -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw -I/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -fexceptions -g   -o CMakeFiles/chainsaw.dir/cmdline.c.o   -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw/cmdline.c
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw/cmdline.c: In function 'cmdline_parser_internal':
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw/cmdline.c:539:7: warning: variable 'check_required' set but not used [-Wunused-but-set-variable]
   int check_required;
       ^
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 98%] Built target reconcile
/<<PKGBUILDDIR>>/src/cxx/tools/reroot/reroot.cc: In function 'int main(int, char**)':
/<<PKGBUILDDIR>>/src/cxx/tools/reroot/reroot.cc:76:13: warning: enumeration value 'input_format__NULL' not handled in switch [-Wswitch]
       switch(args_info.input_format_arg)
             ^
/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw/chainsaw.cc: In function 'beep::Tree ReadGuestTree(gengetopt_args_info&, std::vector<beep::SetOfNodes>*, beep::StrStrMap*)':
/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw/chainsaw.cc:90:9: warning: enumeration value 'guest_tree_format__NULL' not handled in switch [-Wswitch]
   switch(ai.guest_tree_format_arg)
         ^
/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw/chainsaw.cc: In function 'beep::Tree ReadHostTree(gengetopt_args_info&)':
/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw/chainsaw.cc:114:9: warning: enumeration value 'host_tree_format__NULL' not handled in switch [-Wswitch]
   switch(ai.host_tree_format_arg)
         ^
[ 99%] Linking CXX executable chainsaw
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw && /usr/bin/cmake -E cmake_link_script CMakeFiles/chainsaw.dir/link.txt --verbose=1
/usr/bin/c++   -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g   -Wl,-z,relro CMakeFiles/chainsaw.dir/chainsaw.cc.o CMakeFiles/chainsaw.dir/cmdline.c.o  -o chainsaw -rdynamic ../../libraries/prime/libprime-phylo.so -llapack -lblas -lxml2 /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -lboost_mpi -lboost_serialization ../../libraries/sfile/libprime-phylo-sfile.so -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime:/usr/lib/openmpi/lib:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile: 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 99%] Built target chainsaw
[100%] Linking CXX executable reroot
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot && /usr/bin/cmake -E cmake_link_script CMakeFiles/reroot.dir/link.txt --verbose=1
/usr/bin/c++   -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g   -Wl,-z,relro CMakeFiles/reroot.dir/reroot.cc.o CMakeFiles/reroot.dir/cmdline.c.o  -o reroot -rdynamic ../../libraries/prime/libprime-phylo.so -llapack -lblas -lxml2 /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -lboost_mpi -lboost_serialization ../../libraries/sfile/libprime-phylo-sfile.so -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime:/usr/lib/openmpi/lib:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile: 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target reroot
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
   dh_auto_test -a -O--buildsystem=cmake -O--parallel
 fakeroot debian/rules binary-arch
dh binary-arch --buildsystem=cmake --parallel
   dh_testroot -a -O--buildsystem=cmake -O--parallel
   dh_prep -a -O--buildsystem=cmake -O--parallel
   dh_auto_install -a -O--buildsystem=cmake -O--parallel
	make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/prime-phylo AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/build.make src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/libraries/sfile /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/build.make src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[  4%] Built target prime-phylo-sfile
make -f src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/build.make src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/libraries/prime /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/build.make src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 81%] Built target prime-phylo
make -f src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/build.make src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/depend
make -f src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/build.make src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/depend
make -f src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/build.make src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/depend
make -f src/cxx/tools/treesize/CMakeFiles/treesize.dir/build.make src/cxx/tools/treesize/CMakeFiles/treesize.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/applications/primeGEM /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/applications/primeDLRS /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDLRS /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/applications/primeDTLSR /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDTLSR /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/treesize /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize/CMakeFiles/treesize.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/build.make src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/tools/treesize/CMakeFiles/treesize.dir/build.make src/cxx/tools/treesize/CMakeFiles/treesize.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/build.make src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/build.make src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/cxx/tools/treesize/CMakeFiles/treesize.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 85%] Built target primeGEM
[ 86%] Built target treesize
make -f src/cxx/tools/showtree/CMakeFiles/showtree.dir/build.make src/cxx/tools/showtree/CMakeFiles/showtree.dir/depend
make -f src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/build.make src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/showtree /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree/CMakeFiles/showtree.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/reconcile /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/DependInfo.cmake --color=
[ 87%] Built target primeDLRS
make -f src/cxx/tools/reroot/CMakeFiles/reroot.dir/build.make src/cxx/tools/reroot/CMakeFiles/reroot.dir/depend
[ 88%] Built target primeDTLSR
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/reroot /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot/CMakeFiles/reroot.dir/DependInfo.cmake --color=
make -f src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/build.make src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/tools/showtree/CMakeFiles/showtree.dir/build.make src/cxx/tools/showtree/CMakeFiles/showtree.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/build.make src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/cxx/tools/showtree/CMakeFiles/showtree.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/tools/reroot/CMakeFiles/reroot.dir/build.make src/cxx/tools/reroot/CMakeFiles/reroot.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/build.make src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/cxx/tools/reroot/CMakeFiles/reroot.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 90%] Built target showtree
[ 93%] Built target reconcile
make -f src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/build.make src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/chainsaw /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/DependInfo.cmake --color=
[ 96%] Built target reroot
[ 98%] Built target tree2leafnames
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/build.make src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target chainsaw
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Debug"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/primeGEM.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/primeDTLSR.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/primeDLRS.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/treesize.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/showtree.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/reconcile.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/reroot.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/tree2leafnames.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/chainsaw.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/mcmc_analysis.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/lib/prime-phylo/libprime-phylo.so
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/lib/prime-phylo/libprime-phylo.so" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/lib/prime-phylo/libprime-phylo-sfile.so
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/lib/prime-phylo/libprime-phylo-sfile.so" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/primeGEM
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/primeGEM" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/primeDTLSR
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/primeDTLSR" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/primeDLRS
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/primeDLRS" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/treesize
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/treesize" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/showtree
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/showtree" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/reconcile
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/reconcile" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/reroot
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/reroot" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/tree2leafnames
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/tree2leafnames" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/chainsaw
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/chainsaw" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/mcmc_analysis
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
   dh_installdocs -a -O--buildsystem=cmake -O--parallel
   dh_installchangelogs -a -O--buildsystem=cmake -O--parallel
   dh_installman -a -O--buildsystem=cmake -O--parallel
   dh_lintian -a -O--buildsystem=cmake -O--parallel
   dh_perl -a -O--buildsystem=cmake -O--parallel
   dh_link -a -O--buildsystem=cmake -O--parallel
   dh_strip_nondeterminism -a -O--buildsystem=cmake -O--parallel
   dh_compress -a -O--buildsystem=cmake -O--parallel
   dh_fixperms -a -O--buildsystem=cmake -O--parallel
   dh_strip -a -O--buildsystem=cmake -O--parallel
   debian/rules override_dh_makeshlibs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_makeshlibs -pprime-phylo -Xprime-phylo.so -Xprime-phylo-sfile.so
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_shlibdeps -a -O--buildsystem=cmake -O--parallel
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: debian/prime-phylo/usr/bin/primeDLRS contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: debian/prime-phylo/usr/bin/reconcile contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: debian/prime-phylo/usr/bin/chainsaw contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: debian/prime-phylo/usr/bin/primeGEM contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: debian/prime-phylo/usr/bin/showtree contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: debian/prime-phylo/usr/bin/treesize contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: debian/prime-phylo/usr/bin/primeDTLSR contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: debian/prime-phylo/usr/bin/tree2leafnames contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: debian/prime-phylo/usr/lib/prime-phylo/libprime-phylo.so contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: debian/prime-phylo/usr/bin/reroot contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/prime-phylo/usr/bin/primeDLRS debian/prime-phylo/usr/bin/reconcile debian/prime-phylo/usr/bin/chainsaw debian/prime-phylo/usr/bin/primeGEM debian/prime-phylo/usr/bin/showtree debian/prime-phylo/usr/bin/treesize debian/prime-phylo/usr/bin/primeDTLSR debian/prime-phylo/usr/bin/tree2leafnames debian/prime-phylo/usr/lib/prime-phylo/libprime-phylo.so debian/prime-phylo/usr/bin/reroot were not linked against libmpi_cxx.so.1 (they use none of the library's symbols)
   dh_installdeb -a -O--buildsystem=cmake -O--parallel
   dh_gencontrol -a -O--buildsystem=cmake -O--parallel
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
   dh_md5sums -a -O--buildsystem=cmake -O--parallel
   dh_builddeb -a -O--buildsystem=cmake -O--parallel
dpkg-deb: building package 'prime-phylo-dbgsym' in '../prime-phylo-dbgsym_1.0.11-2+b2_armhf.deb'.
dpkg-deb: building package 'prime-phylo' in '../prime-phylo_1.0.11-2+b2_armhf.deb'.
 dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../prime-phylo_1.0.11-2+b2_armhf.changes
dpkg-genchanges: warning: package prime-phylo-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build prime-phylo-1.0.11
dpkg-buildpackage: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160310-0704

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


prime-phylo_1.0.11-2+b2_armhf.changes:
--------------------------------------

Format: 1.8
Date: Fri, 17 Oct 2014 09:45:42 +0200
Source: prime-phylo (1.0.11-2)
Binary: prime-phylo
Binary-Only: yes
Architecture: armhf
Version: 1.0.11-2+b2
Distribution: stretch-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
 prime-phylo - bayesian estimation of gene trees taking the species tree into ac
Changes:
 prime-phylo (1.0.11-2+b2) stretch-staging; urgency=low, binary-only=yes
 .
   * Binary-only non-maintainer upload for armhf; no source changes.
   * rebuild due to debcheck failure
Checksums-Sha1:
 1db9f8d79a3f45eac474138b578422e017132eed 7940358 prime-phylo-dbgsym_1.0.11-2+b2_armhf.deb
 e0f51e3fbb6604105299e3770baf9cfec5b1616b 694508 prime-phylo_1.0.11-2+b2_armhf.deb
Checksums-Sha256:
 0e1dc02b0e9199f72333db20032d1bcc6d8853866fcadef8c404003feaed8a7f 7940358 prime-phylo-dbgsym_1.0.11-2+b2_armhf.deb
 efc0c1887a1e336ced57c861dabaeda16612fc58adf894cb9e35e133c35c28c5 694508 prime-phylo_1.0.11-2+b2_armhf.deb
Files:
 cab6f08a387ed07d1a9eabfbdc0ed131 7940358 debug extra prime-phylo-dbgsym_1.0.11-2+b2_armhf.deb
 ef94cd4c365596a3886dfcd5d7d13e66 694508 science optional prime-phylo_1.0.11-2+b2_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


prime-phylo-dbgsym_1.0.11-2+b2_armhf.deb
----------------------------------------

 new debian package, version 2.0.
 size 7940358 bytes: control archive=1042 bytes.
     846 bytes,    13 lines      control              
    1166 bytes,    11 lines      md5sums              
 Package: prime-phylo-dbgsym
 Source: prime-phylo (1.0.11-2)
 Version: 1.0.11-2+b2
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 8411
 Depends: prime-phylo (= 1.0.11-2+b2)
 Section: debug
 Priority: extra
 Homepage: http://prime.sbc.su.se
 Description: Debug symbols for prime-phylo
 Auto-Built-Package: debug-symbols
 Build-Ids: 0165e6955cc43ac3cfb924a1d401547343cbed16 0a113caea95db84f0dda7a722695a34dd5c436c1 1d4b52b391892b7f83e4477c0823542a48e28347 2e3821242cf449478f1235d8bf4a59320e373ebe 40ac1f8784c43bacb07dd77b92063826206bcb26 4812d03ef817c89ff8783a0a31bddfc3753732b4 5bbf89db8927c56fc99ad8f776889533f11c2deb 63607bdd8033c84039edebf0078783fbe2e5d40d 76b11990d933d0231d60689100a597799f36d9ab 943baf0ff68f6be241873fbe133be4aa8df8ddd1 c68723757802886a1ad322e1cf0be4081ae8670d

drwxr-xr-x root/root         0 2016-03-10 07:04 ./
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/lib/
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/lib/debug/
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/lib/debug/.build-id/01/
-rw-r--r-- root/root     55456 2016-03-10 07:03 ./usr/lib/debug/.build-id/01/65e6955cc43ac3cfb924a1d401547343cbed16.debug
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/lib/debug/.build-id/0a/
-rw-r--r-- root/root    128736 2016-03-10 07:03 ./usr/lib/debug/.build-id/0a/113caea95db84f0dda7a722695a34dd5c436c1.debug
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/lib/debug/.build-id/1d/
-rw-r--r-- root/root    160088 2016-03-10 07:03 ./usr/lib/debug/.build-id/1d/4b52b391892b7f83e4477c0823542a48e28347.debug
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/lib/debug/.build-id/2e/
-rw-r--r-- root/root     58880 2016-03-10 07:03 ./usr/lib/debug/.build-id/2e/3821242cf449478f1235d8bf4a59320e373ebe.debug
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/lib/debug/.build-id/40/
-rw-r--r-- root/root     59916 2016-03-10 07:03 ./usr/lib/debug/.build-id/40/ac1f8784c43bacb07dd77b92063826206bcb26.debug
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/lib/debug/.build-id/48/
-rw-r--r-- root/root   7521088 2016-03-10 07:03 ./usr/lib/debug/.build-id/48/12d03ef817c89ff8783a0a31bddfc3753732b4.debug
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/lib/debug/.build-id/5b/
-rw-r--r-- root/root    216336 2016-03-10 07:03 ./usr/lib/debug/.build-id/5b/bf89db8927c56fc99ad8f776889533f11c2deb.debug
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/lib/debug/.build-id/63/
-rw-r--r-- root/root     71936 2016-03-10 07:03 ./usr/lib/debug/.build-id/63/607bdd8033c84039edebf0078783fbe2e5d40d.debug
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/lib/debug/.build-id/76/
-rw-r--r-- root/root     36612 2016-03-10 07:03 ./usr/lib/debug/.build-id/76/b11990d933d0231d60689100a597799f36d9ab.debug
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/lib/debug/.build-id/94/
-rw-r--r-- root/root    187756 2016-03-10 07:03 ./usr/lib/debug/.build-id/94/3baf0ff68f6be241873fbe133be4aa8df8ddd1.debug
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/lib/debug/.build-id/c6/
-rw-r--r-- root/root     89168 2016-03-10 07:03 ./usr/lib/debug/.build-id/c6/8723757802886a1ad322e1cf0be4081ae8670d.debug
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/share/
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/share/doc/
lrwxrwxrwx root/root         0 2016-03-10 07:03 ./usr/share/doc/prime-phylo-dbgsym -> prime-phylo


prime-phylo_1.0.11-2+b2_armhf.deb
---------------------------------

 new debian package, version 2.0.
 size 694508 bytes: control archive=1624 bytes.
    1083 bytes,    20 lines      control              
    1739 bytes,    27 lines      md5sums              
 Package: prime-phylo
 Source: prime-phylo (1.0.11-2)
 Version: 1.0.11-2+b2
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 2469
 Depends: perl, libblas3 | libblas.so.3, libboost-mpi1.58.0, libboost-serialization1.58.0, libc6 (>= 2.7), libgcc1 (>= 1:4.0), liblapack3 | liblapack.so.3, libopenmpi1.10, libstdc++6 (>= 5.2), libxml2 (>= 2.7.4)
 Suggests: njplot, treeviewx, muscle, probalign, mafft, python-biopython, mrbayes, phyml, raxml
 Section: science
 Priority: optional
 Homepage: http://prime.sbc.su.se
 Description: bayesian estimation of gene trees taking the species tree into account
  PrIME (Probabilistic Integrated Models of Evolution) is a package
  supporting inference of evolutionary parameters in a Bayesian framework
  using Markov chain Monte Carlo simulation. A distinguishing feature of
  PrIME is that the species tree is taken into account when analyzing gene
  trees.
  .
  The input data to PrIME is a multiple sequence alignment in FASTA format
  and the output data contains trees in Newick format.

drwxr-xr-x root/root         0 2016-03-10 07:03 ./
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/bin/
-rwxr-xr-x root/root     26644 2016-03-10 07:03 ./usr/bin/chainsaw
-rwxr-xr-x root/root     33128 2012-12-17 15:52 ./usr/bin/mcmc_analysis
-rwxr-xr-x root/root     76320 2016-03-10 07:03 ./usr/bin/primeDLRS
-rwxr-xr-x root/root     80452 2016-03-10 07:03 ./usr/bin/primeDTLSR
-rwxr-xr-x root/root     35176 2016-03-10 07:03 ./usr/bin/primeGEM
lrwxrwxrwx root/root         0 2016-03-10 07:03 ./usr/bin/primeGSRf -> primeDLRS
-rwxr-xr-x root/root     34880 2016-03-10 07:03 ./usr/bin/reconcile
-rwxr-xr-x root/root     51332 2016-03-10 07:03 ./usr/bin/reroot
-rwxr-xr-x root/root     26724 2016-03-10 07:03 ./usr/bin/showtree
-rwxr-xr-x root/root     18268 2016-03-10 07:03 ./usr/bin/tree2leafnames
-rwxr-xr-x root/root     18276 2016-03-10 07:03 ./usr/bin/treesize
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/lib/
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/lib/prime-phylo/
-rw-r--r-- root/root     42836 2016-03-10 07:03 ./usr/lib/prime-phylo/libprime-phylo-sfile.so
-rw-r--r-- root/root   2033860 2016-03-10 07:03 ./usr/lib/prime-phylo/libprime-phylo.so
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/share/
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/share/doc/
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/share/doc/prime-phylo/
-rw-r--r-- root/root       225 2016-03-10 06:48 ./usr/share/doc/prime-phylo/changelog.Debian.armhf.gz
-rw-r--r-- root/root       278 2016-03-10 06:48 ./usr/share/doc/prime-phylo/changelog.Debian.gz
-rw-r--r-- root/root       505 2012-12-17 15:52 ./usr/share/doc/prime-phylo/changelog.gz
-rw-r--r-- root/root      7324 2014-10-17 08:00 ./usr/share/doc/prime-phylo/copyright
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/share/lintian/
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/share/lintian/overrides/
-rw-r--r-- root/root      1167 2014-10-17 08:00 ./usr/share/lintian/overrides/prime-phylo
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/share/man/
drwxr-xr-x root/root         0 2016-03-10 07:03 ./usr/share/man/man1/
-rw-r--r-- root/root       653 2016-03-10 07:03 ./usr/share/man/man1/chainsaw.1.gz
-rw-r--r-- root/root      1284 2016-03-10 07:03 ./usr/share/man/man1/mcmc_analysis.1.gz
-rw-r--r-- root/root      2154 2016-03-10 07:03 ./usr/share/man/man1/primeDLRS.1.gz
-rw-r--r-- root/root      1992 2016-03-10 07:03 ./usr/share/man/man1/primeDTLSR.1.gz
-rw-r--r-- root/root       987 2016-03-10 07:03 ./usr/share/man/man1/primeGEM.1.gz
lrwxrwxrwx root/root         0 2016-03-10 07:03 ./usr/share/man/man1/primeGSRf.1.gz -> primeDLRS.1.gz
-rw-r--r-- root/root       654 2016-03-10 07:03 ./usr/share/man/man1/reconcile.1.gz
-rw-r--r-- root/root       886 2016-03-10 07:03 ./usr/share/man/man1/reroot.1.gz
-rw-r--r-- root/root       904 2016-03-10 07:03 ./usr/share/man/man1/showtree.1.gz
-rw-r--r-- root/root       494 2016-03-10 07:03 ./usr/share/man/man1/tree2leafnames.1.gz
-rw-r--r-- root/root       608 2016-03-10 07:03 ./usr/share/man/man1/treesize.1.gz


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 98760
Build-Time: 987
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 525
Job: prime-phylo_1.0.11-2
Machine Architecture: armhf
Package: prime-phylo
Package-Time: 1569
Source-Version: 1.0.11-2
Space: 98760
Status: successful
Version: 1.0.11-2+b2
--------------------------------------------------------------------------------
Finished at 20160310-0704
Build needed 00:26:09, 98760k disc space