Raspbian Package Auto-Building

Build log for prime-phylo (1.0.11-10) on armhf

prime-phylo → 1.0.11-10 → armhf → 2021-08-21 15:32:29 

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01

+==============================================================================+
| prime-phylo 1.0.11-10 (armhf)                Sat, 21 Aug 2021 15:00:15 +0000 |
+==============================================================================+

Package: prime-phylo
Version: 1.0.11-10
Source Version: 1.0.11-10
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-056d0574-3e93-4aee-b29b-b30c997bff00' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.3 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.3 MB]
Fetched 25.6 MB in 25s (1023 kB/s)
Reading package lists...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'prime-phylo' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/prime-phylo.git
Please use:
git clone https://salsa.debian.org/med-team/prime-phylo.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 761 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main prime-phylo 1.0.11-10 (dsc) [2204 B]
Get:2 http://172.17.0.1/private bookworm-staging/main prime-phylo 1.0.11-10 (tar) [751 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main prime-phylo 1.0.11-10 (diff) [8524 B]
Fetched 761 kB in 0s (4755 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/prime-phylo-GnMmR8/prime-phylo-1.0.11' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/prime-phylo-GnMmR8' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-7xSF3v/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-7xSF3v/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-7xSF3v/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-7xSF3v/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-7xSF3v/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-7xSF3v/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-7xSF3v/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-7xSF3v/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-7xSF3v/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2880 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-7xSF3v/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-7xSF3v/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 5 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-7xSF3v/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (23.2 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12488 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), gengetopt, cmake, libblas-dev, liblapack-dev, gfortran, bison, flex, libopenmpi-dev, libxml2-dev, libboost-dev, libboost-mpi-dev, libboost-serialization-dev, zlib1g-dev
Filtered Build-Depends: debhelper-compat (= 13), gengetopt, cmake, libblas-dev, liblapack-dev, gfortran, bison, flex, libopenmpi-dev, libxml2-dev, libboost-dev, libboost-mpi-dev, libboost-serialization-dev, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-prime-phylo-dummy' in '/<<BUILDDIR>>/resolver-7xSF3v/apt_archive/sbuild-build-depends-prime-phylo-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-prime-phylo-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-7xSF3v/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-7xSF3v/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-7xSF3v/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-7xSF3v/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-7xSF3v/apt_archive ./ Sources [580 B]
Get:5 copy:/<<BUILDDIR>>/resolver-7xSF3v/apt_archive ./ Packages [661 B]
Fetched 2574 B in 1s (3241 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-7xSF3v/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-7xSF3v/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...

Install prime-phylo build dependencies (apt-based resolver)
-----------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bison bsdextrautils cmake
  cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file flex
  gengetopt gettext gettext-base gfortran gfortran-10 groff-base
  ibverbs-providers icu-devtools intltool-debian libarchive-zip-perl
  libarchive13 libblas-dev libblas3 libboost-dev libboost-mpi-dev
  libboost-mpi1.74-dev libboost-mpi1.74.0 libboost-serialization-dev
  libboost-serialization1.74-dev libboost-serialization1.74.0 libboost1.74-dev
  libbrotli1 libbsd0 libcbor0 libcurl4 libdebhelper-perl libedit2 libelf1
  libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7
  libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1
  libfido2-1 libfile-stripnondeterminism-perl libgfortran-10-dev libgfortran5
  libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1
  libicu-dev libicu67 libjs-jquery libjs-jquery-ui libjsoncpp24 liblapack-dev
  liblapack3 libltdl-dev libltdl7 libmagic-mgc libmagic1 libmd0 libncurses6
  libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev
  libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1
  libpmix-dev libpmix2 libprocps8 libpsl5 librdmacm1 librhash0 librtmp1
  libsigsegv2 libssh2-1 libsub-override-perl libtool libuchardet0 libuv1
  libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxml2-dev
  libxnvctrl0 m4 man-db mpi-default-dev ocl-icd-libopencl1 openmpi-bin
  openmpi-common openssh-client po-debconf procps sensible-utils zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc bison-doc cmake-doc ninja-build
  dh-make flex-doc gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc
  gfortran-10-doc libcoarrays-dev groff lrzip liblapack-doc libboost-doc
  libboost-graph1.74-dev libboost1.74-doc libboost-atomic1.74-dev
  libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev
  libboost-contract1.74-dev libboost-coroutine1.74-dev
  libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
  libboost-filesystem1.74-dev libboost-graph-parallel1.74-dev
  libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev
  libboost-math1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
  libboost-program-options1.74-dev libboost-python1.74-dev
  libboost-random1.74-dev libboost-regex1.74-dev libboost-stacktrace1.74-dev
  libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
  libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
  libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
  icu-doc libjs-jquery-ui-docs libtool-doc openmpi-doc pciutils gcj-jdk
  pkg-config m4-doc apparmor less www-browser opencl-icd keychain libpam-ssh
  monkeysphere ssh-askpass libmail-box-perl
Recommended packages:
  libfl-dev curl | wget | lynx ca-certificates libarchive-cpio-perl
  javascript-common libgpm2 libcoarrays-openmpi-dev publicsuffix xauth
  libmail-sendmail-perl psmisc
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bison bsdextrautils cmake
  cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file flex
  gengetopt gettext gettext-base gfortran gfortran-10 groff-base
  ibverbs-providers icu-devtools intltool-debian libarchive-zip-perl
  libarchive13 libblas-dev libblas3 libboost-dev libboost-mpi-dev
  libboost-mpi1.74-dev libboost-mpi1.74.0 libboost-serialization-dev
  libboost-serialization1.74-dev libboost-serialization1.74.0 libboost1.74-dev
  libbrotli1 libbsd0 libcbor0 libcurl4 libdebhelper-perl libedit2 libelf1
  libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7
  libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1
  libfido2-1 libfile-stripnondeterminism-perl libgfortran-10-dev libgfortran5
  libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1
  libicu-dev libicu67 libjs-jquery libjs-jquery-ui libjsoncpp24 liblapack-dev
  liblapack3 libltdl-dev libltdl7 libmagic-mgc libmagic1 libmd0 libncurses6
  libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev
  libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1
  libpmix-dev libpmix2 libprocps8 libpsl5 librdmacm1 librhash0 librtmp1
  libsigsegv2 libssh2-1 libsub-override-perl libtool libuchardet0 libuv1
  libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxml2-dev
  libxnvctrl0 m4 man-db mpi-default-dev ocl-icd-libopencl1 openmpi-bin
  openmpi-common openssh-client po-debconf procps
  sbuild-build-depends-prime-phylo-dummy sensible-utils zlib1g-dev
0 upgraded, 117 newly installed, 0 to remove and 5 not upgraded.
Need to get 69.8 MB of archives.
After this operation, 392 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-7xSF3v/apt_archive ./ sbuild-build-depends-prime-phylo-dummy 0.invalid.0 [948 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.36.1-8 [137 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-6 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf flex armhf 2.6.4-8 [412 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf libncurses6 armhf 6.2+20201114-2 [79.9 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf libprocps8 armhf 2:3.3.17-5 [60.5 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf procps armhf 2:3.3.17-5 [475 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.14 [14.8 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf libmd0 armhf 1.0.3-3 [27.2 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf libedit2 armhf 3.1-20191231-2 [80.2 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf libcbor0 armhf 0.5.0+dfsg-2 [19.5 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libfido2-1 armhf 1.6.0-2 [47.2 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf openssh-client armhf 1:8.4p1-5+b1 [793 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.69-14 [313 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.3-2 [814 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf bison armhf 2:3.7.6+dfsg-1 [1049 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf cmake-data all 3.18.4-2+rpi1 [1725 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [580 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf libarchive13 armhf 3.4.3-2 [294 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf libssh2-1 armhf 1.9.0-3 [151 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf libcurl4 armhf 7.74.0-1.3 [305 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.2.10-2 [73.4 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf libjsoncpp24 armhf 1.9.4-4 [67.0 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf librhash0 armhf 1.4.1-2 [141 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf libuv1 armhf 1.40.0-2 [119 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf cmake armhf 3.18.4-2+rpi1 [3118 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.3.4 [189 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.183-1 [161 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.3.4 [1049 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf gengetopt armhf 2.23+dfsg1-1 [158 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf libgfortran5 armhf 10.2.1-6+rpi1 [232 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf libgfortran-10-dev armhf 10.2.1-6+rpi1 [278 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf gfortran-10 armhf 10.2.1-6+rpi1 [7195 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf gfortran armhf 4:10.2.1-1+rpi1 [1428 B]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf libnl-3-200 armhf 3.4.0-1 [55.0 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf libnl-route-3-200 armhf 3.4.0-1 [132 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf libibverbs1 armhf 33.2-1 [52.4 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf ibverbs-providers armhf 33.2-1 [25.0 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf icu-devtools armhf 67.1-7 [172 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf libblas-dev armhf 3.9.0-3 [113 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-9 [9534 kB]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf libboost-dev armhf 1.74.0.3+b1 [4820 B]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf libboost-serialization1.74.0 armhf 1.74.0-9 [319 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf libboost-serialization1.74-dev armhf 1.74.0-9 [388 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-1 [126 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libevent-pthreads-2.1-7 armhf 2.1.12-stable-1 [56.8 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf librdmacm1 armhf 33.2-1 [60.0 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf libfabric1 armhf 1.11.0-2 [311 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf libhwloc15 armhf 2.4.1+dfsg-1 [122 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf libpciaccess0 armhf 0.16-1 [51.0 kB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-1 [311 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-1 [705 kB]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.3-1.1 [47.8 kB]
Get:85 http://172.17.0.1/private bookworm-staging/main armhf libxnvctrl0 armhf 470.57.02-2 [26.0 kB]
Get:86 http://172.17.0.1/private bookworm-staging/main armhf ocl-icd-libopencl1 armhf 2.2.14-2 [39.9 kB]
Get:87 http://172.17.0.1/private bookworm-staging/main armhf libhwloc-plugins armhf 2.4.1+dfsg-1 [19.9 kB]
Get:88 http://172.17.0.1/private bookworm-staging/main armhf libpmix2 armhf 4.0.0-4.1 [467 kB]
Get:89 http://172.17.0.1/private bookworm-staging/main armhf libopenmpi3 armhf 4.1.0-10+rpi1 [1768 kB]
Get:90 http://172.17.0.1/private bookworm-staging/main armhf libboost-mpi1.74.0 armhf 1.74.0-9 [274 kB]
Get:91 http://172.17.0.1/private bookworm-staging/main armhf openmpi-common all 4.1.0-10+rpi1 [177 kB]
Get:92 http://172.17.0.1/private bookworm-staging/main armhf libnl-3-dev armhf 3.4.0-1 [92.4 kB]
Get:93 http://172.17.0.1/private bookworm-staging/main armhf libnl-route-3-dev armhf 3.4.0-1 [145 kB]
Get:94 http://172.17.0.1/private bookworm-staging/main armhf libibverbs-dev armhf 33.2-1 [179 kB]
Get:95 http://172.17.0.1/private bookworm-staging/main armhf libnuma1 armhf 2.0.12-1 [22.5 kB]
Get:96 http://172.17.0.1/private bookworm-staging/main armhf libnuma-dev armhf 2.0.12-1 [35.6 kB]
Get:97 http://172.17.0.1/private bookworm-staging/main armhf libltdl7 armhf 2.4.6-15 [388 kB]
Get:98 http://172.17.0.1/private bookworm-staging/main armhf libltdl-dev armhf 2.4.6-15 [159 kB]
Get:99 http://172.17.0.1/private bookworm-staging/main armhf libhwloc-dev armhf 2.4.1+dfsg-1 [190 kB]
Get:100 http://172.17.0.1/private bookworm-staging/main armhf libevent-2.1-7 armhf 2.1.12-stable-1 [167 kB]
Get:101 http://172.17.0.1/private bookworm-staging/main armhf libevent-extra-2.1-7 armhf 2.1.12-stable-1 [100 kB]
Get:102 http://172.17.0.1/private bookworm-staging/main armhf libevent-openssl-2.1-7 armhf 2.1.12-stable-1 [61.7 kB]
Get:103 http://172.17.0.1/private bookworm-staging/main armhf libevent-dev armhf 2.1.12-stable-1 [281 kB]
Get:104 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:105 http://172.17.0.1/private bookworm-staging/main armhf libpmix-dev armhf 4.0.0-4.1 [602 kB]
Get:106 http://172.17.0.1/private bookworm-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB]
Get:107 http://172.17.0.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB]
Get:108 http://172.17.0.1/private bookworm-staging/main armhf openmpi-bin armhf 4.1.0-10+rpi1 [205 kB]
Get:109 http://172.17.0.1/private bookworm-staging/main armhf libopenmpi-dev armhf 4.1.0-10+rpi1 [1143 kB]
Get:110 http://172.17.0.1/private bookworm-staging/main armhf mpi-default-dev armhf 1.14 [5548 B]
Get:111 http://172.17.0.1/private bookworm-staging/main armhf libboost-mpi1.74-dev armhf 1.74.0-9 [299 kB]
Get:112 http://172.17.0.1/private bookworm-staging/main armhf libboost-mpi-dev armhf 1.74.0.3+b1 [4688 B]
Get:113 http://172.17.0.1/private bookworm-staging/main armhf libboost-serialization-dev armhf 1.74.0.3+b1 [4832 B]
Get:114 http://172.17.0.1/private bookworm-staging/main armhf libicu-dev armhf 67.1-7 [9228 kB]
Get:115 http://172.17.0.1/private bookworm-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:116 http://172.17.0.1/private bookworm-staging/main armhf liblapack-dev armhf 3.9.0-3 [2980 kB]
Get:117 http://172.17.0.1/private bookworm-staging/main armhf libxml2-dev armhf 2.9.10+dfsg-6.7 [646 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 69.8 MB in 6s (12.6 MB/s)
Selecting previously unselected package bsdextrautils.
(Reading database ... 12488 files and directories currently installed.)
Preparing to unpack .../000-bsdextrautils_2.36.1-8_armhf.deb ...
Unpacking bsdextrautils (2.36.1-8) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../001-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../002-groff-base_1.22.4-6_armhf.deb ...
Unpacking groff-base (1.22.4-6) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../003-libpipeline1_1.5.3-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.3-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../004-man-db_2.9.4-2_armhf.deb ...
Unpacking man-db (2.9.4-2) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../005-libsigsegv2_2.13-1_armhf.deb ...
Unpacking libsigsegv2:armhf (2.13-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../006-m4_1.4.18-5_armhf.deb ...
Unpacking m4 (1.4.18-5) ...
Selecting previously unselected package flex.
Preparing to unpack .../007-flex_2.6.4-8_armhf.deb ...
Unpacking flex (2.6.4-8) ...
Selecting previously unselected package libncurses6:armhf.
Preparing to unpack .../008-libncurses6_6.2+20201114-2_armhf.deb ...
Unpacking libncurses6:armhf (6.2+20201114-2) ...
Selecting previously unselected package libprocps8:armhf.
Preparing to unpack .../009-libprocps8_2%3a3.3.17-5_armhf.deb ...
Unpacking libprocps8:armhf (2:3.3.17-5) ...
Selecting previously unselected package procps.
Preparing to unpack .../010-procps_2%3a3.3.17-5_armhf.deb ...
Unpacking procps (2:3.3.17-5) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../011-sensible-utils_0.0.14_all.deb ...
Unpacking sensible-utils (0.0.14) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../012-libmagic-mgc_1%3a5.39-3_armhf.deb ...
Unpacking libmagic-mgc (1:5.39-3) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../013-libmagic1_1%3a5.39-3_armhf.deb ...
Unpacking libmagic1:armhf (1:5.39-3) ...
Selecting previously unselected package file.
Preparing to unpack .../014-file_1%3a5.39-3_armhf.deb ...
Unpacking file (1:5.39-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../015-gettext-base_0.21-4_armhf.deb ...
Unpacking gettext-base (0.21-4) ...
Selecting previously unselected package libmd0:armhf.
Preparing to unpack .../016-libmd0_1.0.3-3_armhf.deb ...
Unpacking libmd0:armhf (1.0.3-3) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../017-libbsd0_0.11.3-1_armhf.deb ...
Unpacking libbsd0:armhf (0.11.3-1) ...
Selecting previously unselected package libedit2:armhf.
Preparing to unpack .../018-libedit2_3.1-20191231-2_armhf.deb ...
Unpacking libedit2:armhf (3.1-20191231-2) ...
Selecting previously unselected package libcbor0:armhf.
Preparing to unpack .../019-libcbor0_0.5.0+dfsg-2_armhf.deb ...
Unpacking libcbor0:armhf (0.5.0+dfsg-2) ...
Selecting previously unselected package libfido2-1:armhf.
Preparing to unpack .../020-libfido2-1_1.6.0-2_armhf.deb ...
Unpacking libfido2-1:armhf (1.6.0-2) ...
Selecting previously unselected package openssh-client.
Preparing to unpack .../021-openssh-client_1%3a8.4p1-5+b1_armhf.deb ...
Unpacking openssh-client (1:8.4p1-5+b1) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../022-autoconf_2.69-14_all.deb ...
Unpacking autoconf (2.69-14) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../023-autotools-dev_20180224.1+nmu1_all.deb ...
Unpacking autotools-dev (20180224.1+nmu1) ...
Selecting previously unselected package automake.
Preparing to unpack .../024-automake_1%3a1.16.3-2_all.deb ...
Unpacking automake (1:1.16.3-2) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../025-autopoint_0.21-4_all.deb ...
Unpacking autopoint (0.21-4) ...
Selecting previously unselected package bison.
Preparing to unpack .../026-bison_2%3a3.7.6+dfsg-1_armhf.deb ...
Unpacking bison (2:3.7.6+dfsg-1) ...
Selecting previously unselected package cmake-data.
Preparing to unpack .../027-cmake-data_3.18.4-2+rpi1_all.deb ...
Unpacking cmake-data (3.18.4-2+rpi1) ...
Selecting previously unselected package libicu67:armhf.
Preparing to unpack .../028-libicu67_67.1-7_armhf.deb ...
Unpacking libicu67:armhf (67.1-7) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../029-libxml2_2.9.10+dfsg-6.7_armhf.deb ...
Unpacking libxml2:armhf (2.9.10+dfsg-6.7) ...
Selecting previously unselected package libarchive13:armhf.
Preparing to unpack .../030-libarchive13_3.4.3-2_armhf.deb ...
Unpacking libarchive13:armhf (3.4.3-2) ...
Selecting previously unselected package libbrotli1:armhf.
Preparing to unpack .../031-libbrotli1_1.0.9-2+b1_armhf.deb ...
Unpacking libbrotli1:armhf (1.0.9-2+b1) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../032-libnghttp2-14_1.43.0-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.43.0-1) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../033-libpsl5_0.21.0-1.2_armhf.deb ...
Unpacking libpsl5:armhf (0.21.0-1.2) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../034-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../035-libssh2-1_1.9.0-3_armhf.deb ...
Unpacking libssh2-1:armhf (1.9.0-3) ...
Selecting previously unselected package libcurl4:armhf.
Preparing to unpack .../036-libcurl4_7.74.0-1.3_armhf.deb ...
Unpacking libcurl4:armhf (7.74.0-1.3) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../037-libexpat1_2.2.10-2_armhf.deb ...
Unpacking libexpat1:armhf (2.2.10-2) ...
Selecting previously unselected package libjsoncpp24:armhf.
Preparing to unpack .../038-libjsoncpp24_1.9.4-4_armhf.deb ...
Unpacking libjsoncpp24:armhf (1.9.4-4) ...
Selecting previously unselected package librhash0:armhf.
Preparing to unpack .../039-librhash0_1.4.1-2_armhf.deb ...
Unpacking librhash0:armhf (1.4.1-2) ...
Selecting previously unselected package libuv1:armhf.
Preparing to unpack .../040-libuv1_1.40.0-2_armhf.deb ...
Unpacking libuv1:armhf (1.40.0-2) ...
Selecting previously unselected package cmake.
Preparing to unpack .../041-cmake_3.18.4-2+rpi1_armhf.deb ...
Unpacking cmake (3.18.4-2+rpi1) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../042-libdebhelper-perl_13.3.4_all.deb ...
Unpacking libdebhelper-perl (13.3.4) ...
Selecting previously unselected package libtool.
Preparing to unpack .../043-libtool_2.4.6-15_all.deb ...
Unpacking libtool (2.4.6-15) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../044-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../045-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../046-libsub-override-perl_0.09-2_all.deb ...
Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../047-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../048-dh-strip-nondeterminism_1.12.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.12.0-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../049-libelf1_0.183-1_armhf.deb ...
Unpacking libelf1:armhf (0.183-1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../050-dwz_0.14-1_armhf.deb ...
Unpacking dwz (0.14-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../051-gettext_0.21-4_armhf.deb ...
Unpacking gettext (0.21-4) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../052-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../053-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../054-debhelper_13.3.4_all.deb ...
Unpacking debhelper (13.3.4) ...
Selecting previously unselected package gengetopt.
Preparing to unpack .../055-gengetopt_2.23+dfsg1-1_armhf.deb ...
Unpacking gengetopt (2.23+dfsg1-1) ...
Selecting previously unselected package libgfortran5:armhf.
Preparing to unpack .../056-libgfortran5_10.2.1-6+rpi1_armhf.deb ...
Unpacking libgfortran5:armhf (10.2.1-6+rpi1) ...
Selecting previously unselected package libgfortran-10-dev:armhf.
Preparing to unpack .../057-libgfortran-10-dev_10.2.1-6+rpi1_armhf.deb ...
Unpacking libgfortran-10-dev:armhf (10.2.1-6+rpi1) ...
Selecting previously unselected package gfortran-10.
Preparing to unpack .../058-gfortran-10_10.2.1-6+rpi1_armhf.deb ...
Unpacking gfortran-10 (10.2.1-6+rpi1) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../059-gfortran_4%3a10.2.1-1+rpi1_armhf.deb ...
Unpacking gfortran (4:10.2.1-1+rpi1) ...
Selecting previously unselected package libnl-3-200:armhf.
Preparing to unpack .../060-libnl-3-200_3.4.0-1_armhf.deb ...
Unpacking libnl-3-200:armhf (3.4.0-1) ...
Selecting previously unselected package libnl-route-3-200:armhf.
Preparing to unpack .../061-libnl-route-3-200_3.4.0-1_armhf.deb ...
Unpacking libnl-route-3-200:armhf (3.4.0-1) ...
Selecting previously unselected package libibverbs1:armhf.
Preparing to unpack .../062-libibverbs1_33.2-1_armhf.deb ...
Unpacking libibverbs1:armhf (33.2-1) ...
Selecting previously unselected package ibverbs-providers:armhf.
Preparing to unpack .../063-ibverbs-providers_33.2-1_armhf.deb ...
Unpacking ibverbs-providers:armhf (33.2-1) ...
Selecting previously unselected package icu-devtools.
Preparing to unpack .../064-icu-devtools_67.1-7_armhf.deb ...
Unpacking icu-devtools (67.1-7) ...
Selecting previously unselected package libblas3:armhf.
Preparing to unpack .../065-libblas3_3.9.0-3_armhf.deb ...
Unpacking libblas3:armhf (3.9.0-3) ...
Selecting previously unselected package libblas-dev:armhf.
Preparing to unpack .../066-libblas-dev_3.9.0-3_armhf.deb ...
Unpacking libblas-dev:armhf (3.9.0-3) ...
Selecting previously unselected package libboost1.74-dev:armhf.
Preparing to unpack .../067-libboost1.74-dev_1.74.0-9_armhf.deb ...
Unpacking libboost1.74-dev:armhf (1.74.0-9) ...
Selecting previously unselected package libboost-dev:armhf.
Preparing to unpack .../068-libboost-dev_1.74.0.3+b1_armhf.deb ...
Unpacking libboost-dev:armhf (1.74.0.3+b1) ...
Selecting previously unselected package libboost-serialization1.74.0:armhf.
Preparing to unpack .../069-libboost-serialization1.74.0_1.74.0-9_armhf.deb ...
Unpacking libboost-serialization1.74.0:armhf (1.74.0-9) ...
Selecting previously unselected package libboost-serialization1.74-dev:armhf.
Preparing to unpack .../070-libboost-serialization1.74-dev_1.74.0-9_armhf.deb ...
Unpacking libboost-serialization1.74-dev:armhf (1.74.0-9) ...
Selecting previously unselected package libevent-core-2.1-7:armhf.
Preparing to unpack .../071-libevent-core-2.1-7_2.1.12-stable-1_armhf.deb ...
Unpacking libevent-core-2.1-7:armhf (2.1.12-stable-1) ...
Selecting previously unselected package libevent-pthreads-2.1-7:armhf.
Preparing to unpack .../072-libevent-pthreads-2.1-7_2.1.12-stable-1_armhf.deb ...
Unpacking libevent-pthreads-2.1-7:armhf (2.1.12-stable-1) ...
Selecting previously unselected package librdmacm1:armhf.
Preparing to unpack .../073-librdmacm1_33.2-1_armhf.deb ...
Unpacking librdmacm1:armhf (33.2-1) ...
Selecting previously unselected package libfabric1.
Preparing to unpack .../074-libfabric1_1.11.0-2_armhf.deb ...
Unpacking libfabric1 (1.11.0-2) ...
Selecting previously unselected package libhwloc15:armhf.
Preparing to unpack .../075-libhwloc15_2.4.1+dfsg-1_armhf.deb ...
Unpacking libhwloc15:armhf (2.4.1+dfsg-1) ...
Selecting previously unselected package libpciaccess0:armhf.
Preparing to unpack .../076-libpciaccess0_0.16-1_armhf.deb ...
Unpacking libpciaccess0:armhf (0.16-1) ...
Selecting previously unselected package libxau6:armhf.
Preparing to unpack .../077-libxau6_1%3a1.0.9-1_armhf.deb ...
Unpacking libxau6:armhf (1:1.0.9-1) ...
Selecting previously unselected package libxdmcp6:armhf.
Preparing to unpack .../078-libxdmcp6_1%3a1.1.2-3_armhf.deb ...
Unpacking libxdmcp6:armhf (1:1.1.2-3) ...
Selecting previously unselected package libxcb1:armhf.
Preparing to unpack .../079-libxcb1_1.14-3_armhf.deb ...
Unpacking libxcb1:armhf (1.14-3) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../080-libx11-data_2%3a1.7.2-1_all.deb ...
Unpacking libx11-data (2:1.7.2-1) ...
Selecting previously unselected package libx11-6:armhf.
Preparing to unpack .../081-libx11-6_2%3a1.7.2-1_armhf.deb ...
Unpacking libx11-6:armhf (2:1.7.2-1) ...
Selecting previously unselected package libxext6:armhf.
Preparing to unpack .../082-libxext6_2%3a1.3.3-1.1_armhf.deb ...
Unpacking libxext6:armhf (2:1.3.3-1.1) ...
Selecting previously unselected package libxnvctrl0:armhf.
Preparing to unpack .../083-libxnvctrl0_470.57.02-2_armhf.deb ...
Unpacking libxnvctrl0:armhf (470.57.02-2) ...
Selecting previously unselected package ocl-icd-libopencl1:armhf.
Preparing to unpack .../084-ocl-icd-libopencl1_2.2.14-2_armhf.deb ...
Unpacking ocl-icd-libopencl1:armhf (2.2.14-2) ...
Selecting previously unselected package libhwloc-plugins:armhf.
Preparing to unpack .../085-libhwloc-plugins_2.4.1+dfsg-1_armhf.deb ...
Unpacking libhwloc-plugins:armhf (2.4.1+dfsg-1) ...
Selecting previously unselected package libpmix2:armhf.
Preparing to unpack .../086-libpmix2_4.0.0-4.1_armhf.deb ...
Unpacking libpmix2:armhf (4.0.0-4.1) ...
Selecting previously unselected package libopenmpi3:armhf.
Preparing to unpack .../087-libopenmpi3_4.1.0-10+rpi1_armhf.deb ...
Unpacking libopenmpi3:armhf (4.1.0-10+rpi1) ...
Selecting previously unselected package libboost-mpi1.74.0.
Preparing to unpack .../088-libboost-mpi1.74.0_1.74.0-9_armhf.deb ...
Unpacking libboost-mpi1.74.0 (1.74.0-9) ...
Selecting previously unselected package openmpi-common.
Preparing to unpack .../089-openmpi-common_4.1.0-10+rpi1_all.deb ...
Unpacking openmpi-common (4.1.0-10+rpi1) ...
Selecting previously unselected package libnl-3-dev:armhf.
Preparing to unpack .../090-libnl-3-dev_3.4.0-1_armhf.deb ...
Unpacking libnl-3-dev:armhf (3.4.0-1) ...
Selecting previously unselected package libnl-route-3-dev:armhf.
Preparing to unpack .../091-libnl-route-3-dev_3.4.0-1_armhf.deb ...
Unpacking libnl-route-3-dev:armhf (3.4.0-1) ...
Selecting previously unselected package libibverbs-dev:armhf.
Preparing to unpack .../092-libibverbs-dev_33.2-1_armhf.deb ...
Unpacking libibverbs-dev:armhf (33.2-1) ...
Selecting previously unselected package libnuma1:armhf.
Preparing to unpack .../093-libnuma1_2.0.12-1_armhf.deb ...
Unpacking libnuma1:armhf (2.0.12-1) ...
Selecting previously unselected package libnuma-dev:armhf.
Preparing to unpack .../094-libnuma-dev_2.0.12-1_armhf.deb ...
Unpacking libnuma-dev:armhf (2.0.12-1) ...
Selecting previously unselected package libltdl7:armhf.
Preparing to unpack .../095-libltdl7_2.4.6-15_armhf.deb ...
Unpacking libltdl7:armhf (2.4.6-15) ...
Selecting previously unselected package libltdl-dev:armhf.
Preparing to unpack .../096-libltdl-dev_2.4.6-15_armhf.deb ...
Unpacking libltdl-dev:armhf (2.4.6-15) ...
Selecting previously unselected package libhwloc-dev:armhf.
Preparing to unpack .../097-libhwloc-dev_2.4.1+dfsg-1_armhf.deb ...
Unpacking libhwloc-dev:armhf (2.4.1+dfsg-1) ...
Selecting previously unselected package libevent-2.1-7:armhf.
Preparing to unpack .../098-libevent-2.1-7_2.1.12-stable-1_armhf.deb ...
Unpacking libevent-2.1-7:armhf (2.1.12-stable-1) ...
Selecting previously unselected package libevent-extra-2.1-7:armhf.
Preparing to unpack .../099-libevent-extra-2.1-7_2.1.12-stable-1_armhf.deb ...
Unpacking libevent-extra-2.1-7:armhf (2.1.12-stable-1) ...
Selecting previously unselected package libevent-openssl-2.1-7:armhf.
Preparing to unpack .../100-libevent-openssl-2.1-7_2.1.12-stable-1_armhf.deb ...
Unpacking libevent-openssl-2.1-7:armhf (2.1.12-stable-1) ...
Selecting previously unselected package libevent-dev.
Preparing to unpack .../101-libevent-dev_2.1.12-stable-1_armhf.deb ...
Unpacking libevent-dev (2.1.12-stable-1) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../102-zlib1g-dev_1%3a1.2.11.dfsg-2_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Selecting previously unselected package libpmix-dev:armhf.
Preparing to unpack .../103-libpmix-dev_4.0.0-4.1_armhf.deb ...
Unpacking libpmix-dev:armhf (4.0.0-4.1) ...
Selecting previously unselected package libjs-jquery.
Preparing to unpack .../104-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ...
Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ...
Selecting previously unselected package libjs-jquery-ui.
Preparing to unpack .../105-libjs-jquery-ui_1.12.1+dfsg-8_all.deb ...
Unpacking libjs-jquery-ui (1.12.1+dfsg-8) ...
Selecting previously unselected package openmpi-bin.
Preparing to unpack .../106-openmpi-bin_4.1.0-10+rpi1_armhf.deb ...
Unpacking openmpi-bin (4.1.0-10+rpi1) ...
Selecting previously unselected package libopenmpi-dev:armhf.
Preparing to unpack .../107-libopenmpi-dev_4.1.0-10+rpi1_armhf.deb ...
Unpacking libopenmpi-dev:armhf (4.1.0-10+rpi1) ...
Selecting previously unselected package mpi-default-dev.
Preparing to unpack .../108-mpi-default-dev_1.14_armhf.deb ...
Unpacking mpi-default-dev (1.14) ...
Selecting previously unselected package libboost-mpi1.74-dev.
Preparing to unpack .../109-libboost-mpi1.74-dev_1.74.0-9_armhf.deb ...
Unpacking libboost-mpi1.74-dev (1.74.0-9) ...
Selecting previously unselected package libboost-mpi-dev.
Preparing to unpack .../110-libboost-mpi-dev_1.74.0.3+b1_armhf.deb ...
Unpacking libboost-mpi-dev (1.74.0.3+b1) ...
Selecting previously unselected package libboost-serialization-dev:armhf.
Preparing to unpack .../111-libboost-serialization-dev_1.74.0.3+b1_armhf.deb ...
Unpacking libboost-serialization-dev:armhf (1.74.0.3+b1) ...
Selecting previously unselected package libicu-dev:armhf.
Preparing to unpack .../112-libicu-dev_67.1-7_armhf.deb ...
Unpacking libicu-dev:armhf (67.1-7) ...
Selecting previously unselected package liblapack3:armhf.
Preparing to unpack .../113-liblapack3_3.9.0-3_armhf.deb ...
Unpacking liblapack3:armhf (3.9.0-3) ...
Selecting previously unselected package liblapack-dev:armhf.
Preparing to unpack .../114-liblapack-dev_3.9.0-3_armhf.deb ...
Unpacking liblapack-dev:armhf (3.9.0-3) ...
Selecting previously unselected package libxml2-dev:armhf.
Preparing to unpack .../115-libxml2-dev_2.9.10+dfsg-6.7_armhf.deb ...
Unpacking libxml2-dev:armhf (2.9.10+dfsg-6.7) ...
Selecting previously unselected package sbuild-build-depends-prime-phylo-dummy.
Preparing to unpack .../116-sbuild-build-depends-prime-phylo-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-prime-phylo-dummy (0.invalid.0) ...
Setting up libexpat1:armhf (2.2.10-2) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up libpciaccess0:armhf (0.16-1) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up libboost1.74-dev:armhf (1.74.0-9) ...
Setting up gengetopt (2.23+dfsg1-1) ...
Setting up bsdextrautils (2.36.1-8) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libicu67:armhf (67.1-7) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.3.4) ...
Setting up libbrotli1:armhf (1.0.9-2+b1) ...
Setting up libcbor0:armhf (0.5.0+dfsg-2) ...
Setting up libnghttp2-14:armhf (1.43.0-1) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.39-3) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libblas3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libuv1:armhf (1.40.0-2) ...
Setting up libx11-data (2:1.7.2-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.2+20201114-2) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up libhwloc15:armhf (2.4.1+dfsg-1) ...
Setting up libevent-core-2.1-7:armhf (2.1.12-stable-1) ...
Setting up libevent-2.1-7:armhf (2.1.12-stable-1) ...
Setting up autopoint (0.21-4) ...
Setting up icu-devtools (67.1-7) ...
Setting up libltdl7:armhf (2.4.6-15) ...
Setting up libgfortran5:armhf (10.2.1-6+rpi1) ...
Setting up libjsoncpp24:armhf (1.9.4-4) ...
Setting up libboost-serialization1.74.0:armhf (1.74.0-9) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up libnuma1:armhf (2.0.12-1) ...
Setting up libmd0:armhf (1.0.3-3) ...
Setting up sensible-utils (0.0.14) ...
Setting up ocl-icd-libopencl1:armhf (2.2.14-2) ...
Setting up librhash0:armhf (1.4.1-2) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libnl-3-200:armhf (3.4.0-1) ...
Setting up openmpi-common (4.1.0-10+rpi1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libgfortran-10-dev:armhf (10.2.1-6+rpi1) ...
Setting up libssh2-1:armhf (1.9.0-3) ...
Setting up cmake-data (3.18.4-2+rpi1) ...
Setting up libboost-dev:armhf (1.74.0.3+b1) ...
Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ...
Setting up libfido2-1:armhf (1.6.0-2) ...
Setting up libbsd0:armhf (0.11.3-1) ...
Setting up libelf1:armhf (0.183-1) ...
Setting up libicu-dev:armhf (67.1-7) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.7) ...
Setting up libprocps8:armhf (2:3.3.17-5) ...
Setting up libblas-dev:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up libevent-pthreads-2.1-7:armhf (2.1.12-stable-1) ...
Setting up libfile-stripnondeterminism-perl (1.12.0-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libevent-extra-2.1-7:armhf (2.1.12-stable-1) ...
Setting up liblapack3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.14-3) ...
Setting up gettext (0.21-4) ...
Setting up libtool (2.4.6-15) ...
Setting up libarchive13:armhf (3.4.3-2) ...
Setting up libedit2:armhf (3.1-20191231-2) ...
Setting up libevent-openssl-2.1-7:armhf (2.1.12-stable-1) ...
Setting up m4 (1.4.18-5) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libnuma-dev:armhf (2.0.12-1) ...
Setting up libnl-route-3-200:armhf (3.4.0-1) ...
Setting up libxml2-dev:armhf (2.9.10+dfsg-6.7) ...
Setting up libjs-jquery-ui (1.12.1+dfsg-8) ...
Setting up libevent-dev (2.1.12-stable-1) ...
Setting up liblapack-dev:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up gfortran-10 (10.2.1-6+rpi1) ...
Setting up autoconf (2.69-14) ...
Setting up libboost-serialization1.74-dev:armhf (1.74.0-9) ...
Setting up dh-strip-nondeterminism (1.12.0-1) ...
Setting up dwz (0.14-1) ...
Setting up libnl-3-dev:armhf (3.4.0-1) ...
Setting up groff-base (1.22.4-6) ...
Setting up procps (2:3.3.17-5) ...
Setting up bison (2:3.7.6+dfsg-1) ...
update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode
Setting up libcurl4:armhf (7.74.0-1.3) ...
Setting up libx11-6:armhf (2:1.7.2-1) ...
Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libibverbs1:armhf (33.2-1) ...
Setting up flex (2.6.4-8) ...
Setting up ibverbs-providers:armhf (33.2-1) ...
Setting up openssh-client (1:8.4p1-5+b1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libxext6:armhf (2:1.3.3-1.1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:10.2.1-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libxnvctrl0:armhf (470.57.02-2) ...
Setting up dh-autoreconf (20) ...
Setting up libnl-route-3-dev:armhf (3.4.0-1) ...
Setting up libltdl-dev:armhf (2.4.6-15) ...
Setting up libboost-serialization-dev:armhf (1.74.0.3+b1) ...
Setting up cmake (3.18.4-2+rpi1) ...
Setting up libhwloc-dev:armhf (2.4.1+dfsg-1) ...
Setting up librdmacm1:armhf (33.2-1) ...
Setting up debhelper (13.3.4) ...
Setting up libibverbs-dev:armhf (33.2-1) ...
Setting up libhwloc-plugins:armhf (2.4.1+dfsg-1) ...
Setting up libfabric1 (1.11.0-2) ...
Setting up libpmix2:armhf (4.0.0-4.1) ...
Setting up libopenmpi3:armhf (4.1.0-10+rpi1) ...
Setting up libboost-mpi1.74.0 (1.74.0-9) ...
Setting up libpmix-dev:armhf (4.0.0-4.1) ...
Setting up openmpi-bin (4.1.0-10+rpi1) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Setting up libopenmpi-dev:armhf (4.1.0-10+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode
Setting up mpi-default-dev (1.14) ...
Setting up libboost-mpi1.74-dev (1.74.0-9) ...
Setting up libboost-mpi-dev (1.74.0.3+b1) ...
Setting up sbuild-build-depends-prime-phylo-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-13+rpi1) ...

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35.2-2+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.2.1-6+rpi1 gcc-10_10.2.1-6+rpi1 libc6-dev_2.31-13+rpi1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.2.4 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1+rpi1 base-passwd_3.5.51 bash_5.1-2 binutils_2.35.2-2+rpi1 binutils-arm-linux-gnueabihf_2.35.2-2+rpi1 binutils-common_2.35.2-2+rpi1 bison_2:3.7.6+dfsg-1 bsdextrautils_2.36.1-8 bsdutils_1:2.36.1-8 build-essential_12.9 bzip2_1.0.8-4 cmake_3.18.4-2+rpi1 cmake-data_3.18.4-2+rpi1 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.2.1-6+rpi1 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.77 debhelper_13.3.4 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.2-2 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 flex_2.6.4-8 g++_4:10.2.1-1+rpi1 g++-10_10.2.1-6+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.2.1-6+rpi1 gcc-10-base_10.2.1-6+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.3.0-22+rpi1 gengetopt_2.23+dfsg1-1 gettext_0.21-4 gettext-base_0.21-4 gfortran_4:10.2.1-1+rpi1 gfortran-10_10.2.1-6+rpi1 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4 hostname_3.23 ibverbs-providers_33.2-1 icu-devtools_67.1-7 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libapt-pkg6.0_2.2.4 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2 libasan6_10.2.1-6+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-6+rpi1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libbinutils_2.35.2-2+rpi1 libblas-dev_3.9.0-3 libblas3_3.9.0-3 libblkid1_2.36.1-8 libboost-dev_1.74.0.3+b1 libboost-mpi-dev_1.74.0.3+b1 libboost-mpi1.74-dev_1.74.0-9 libboost-mpi1.74.0_1.74.0-9 libboost-serialization-dev_1.74.0.3+b1 libboost-serialization1.74-dev_1.74.0-9 libboost-serialization1.74.0_1.74.0-9 libboost1.74-dev_1.74.0-9 libbrotli1_1.0.9-2+b1 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-13+rpi1 libc-dev-bin_2.31-13+rpi1 libc6_2.31-13+rpi1 libc6-dev_2.31-13+rpi1 libcap-ng0_0.7.9-2.2+b1 libcbor0_0.5.0+dfsg-2 libcc1-0_10.2.1-6+rpi1 libcom-err2_1.46.2-2 libcrypt-dev_1:4.4.18-4 libcrypt1_1:4.4.18-4 libctf-nobfd0_2.35.2-2+rpi1 libctf0_2.35.2-2+rpi1 libcurl4_7.74.0-1.3 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.3.4 libdpkg-perl_1.20.9+rpi1 libedit2_3.1-20191231-2 libelf1_0.183-1 libevent-2.1-7_2.1.12-stable-1 libevent-core-2.1-7_2.1.12-stable-1 libevent-dev_2.1.12-stable-1 libevent-extra-2.1-7_2.1.12-stable-1 libevent-openssl-2.1-7_2.1.12-stable-1 libevent-pthreads-2.1-7_2.1.12-stable-1 libexpat1_2.2.10-2 libext2fs2_1.46.2-2 libfabric1_1.11.0-2 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libfido2-1_1.6.0-2 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-10-dev_10.2.1-6+rpi1 libgcc-s1_10.2.1-6+rpi1 libgcrypt20_1.8.7-6 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgfortran-10-dev_10.2.1-6+rpi1 libgfortran5_10.2.1-6+rpi1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.1-5 libgomp1_10.2.1-6+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-6 libhogweed6_3.7.3-1 libhwloc-dev_2.4.1+dfsg-1 libhwloc-plugins_2.4.1+dfsg-1 libhwloc15_2.4.1+dfsg-1 libibverbs-dev_33.2-1 libibverbs1_33.2-1 libicu-dev_67.1-7 libicu67_67.1-7 libidn2-0_2.3.0-5 libisl23_0.23-1 libjs-jquery_3.5.1+dfsg+~3.5.5-7 libjs-jquery-ui_1.12.1+dfsg-8 libjsoncpp24_1.9.4-4 libk5crypto3_1.18.3-6 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-6 libkrb5support0_1.18.3-6 libksba8_1.5.0-3 liblapack-dev_3.9.0-3 liblapack3_3.9.0-3 libldap-2.4-2_2.4.57+dfsg-3 liblocale-gettext-perl_1.07-4+b1 libltdl-dev_2.4.6-15 libltdl7_2.4.6-15 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmd0_1.0.3-3 libmount1_2.36.1-8 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20201114-2 libncursesw6_6.2+20201114-2 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnl-3-200_3.4.0-1 libnl-3-dev_3.4.0-1 libnl-route-3-200_3.4.0-1 libnl-route-3-dev_3.4.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnuma-dev_2.0.12-1 libnuma1_2.0.12-1 libopenmpi-dev_4.1.0-10+rpi1 libopenmpi3_4.1.0-10+rpi1 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-9 libpam-modules-bin_1.4.0-9 libpam-runtime_1.4.0-9 libpam0g_1.4.0-9 libpciaccess0_0.16-1 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-4+deb11u1 libpipeline1_1.5.3-1 libpmix-dev_4.0.0-4.1 libpmix2_4.0.0-4.1 libprocps8_2:3.3.17-5 libpsl5_0.21.0-1.2 librdmacm1_33.2-1 libreadline8_8.1-1 librhash0_1.4.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.36.1-8 libsqlite3-0_3.34.1-3 libss2_1.46.2-2 libssh2-1_1.9.0-3 libssl1.1_1.1.1k-1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.3-6+rpi1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-15 libubsan1_10.2.1-6+rpi1 libuchardet0_0.0.7-1 libudev1_247.3-6+rpi1 libunistring2_0.9.10-4 libuuid1_2.36.1-8 libuv1_1.40.0-2 libx11-6_2:1.7.2-1 libx11-data_2:1.7.2-1 libxau6_1:1.0.9-1 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1.1 libxml2_2.9.10+dfsg-6.7 libxml2-dev_2.9.10+dfsg-6.7 libxnvctrl0_470.57.02-2 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.2-2 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.36.1-8 mpi-default-dev_1.14 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 netbase_6.3 ocl-icd-libopencl1_2.2.14-2 openmpi-bin_4.1.0-10+rpi1 openmpi-common_4.1.0-10+rpi1 openssh-client_1:8.4p1-5+b1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-4+deb11u1 perl-base_5.32.1-4+deb11u1 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 procps_2:3.3.17-5 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-prime-phylo-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.14 sysvinit-utils_2.96-7 tar_1.34+dfsg-1 tzdata_2021a-1 util-linux_2.36.1-8 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.GzNVyLbr/trustedkeys.kbx': General error
gpgv: Signature made Sun Aug 15 14:21:26 2021 UTC
gpgv:                using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv:                issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./prime-phylo_1.0.11-10.dsc
dpkg-source: info: extracting prime-phylo in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking prime-phylo_1.0.11.orig.tar.gz
dpkg-source: info: unpacking prime-phylo_1.0.11-10.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix-ftbfs-with-Boost160.patch
dpkg-source: info: applying fix-gcc-8.patch
dpkg-source: info: applying 0003-Fix-build-with-Boost-1.67.patch
dpkg-source: info: applying 0004-fix-gcc10-build.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-056d0574-3e93-4aee-b29b-b30c997bff00
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package prime-phylo
dpkg-buildpackage: info: source version 1.0.11-10
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --buildsystem=cmake
   dh_auto_clean -O--buildsystem=cmake
   dh_autoreconf_clean -O--buildsystem=cmake
   dh_clean -O--buildsystem=cmake
 debian/rules binary-arch
dh binary-arch --buildsystem=cmake
   dh_update_autotools_config -a -O--buildsystem=cmake
   dh_autoreconf -a -O--buildsystem=cmake
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- \
-Dofficial_binary_packaging=on \
-Dprime_dynamic=on \
-DCMAKE_INSTALL_PREFIX=/usr \
-DCMAKE_INSTALL_RPATH=/usr/lib/prime-phylo \
-DCMAKE_BUILD_TYPE=RELEASE
	cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -Dofficial_binary_packaging=on -Dprime_dynamic=on -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_INSTALL_RPATH=/usr/lib/prime-phylo -DCMAKE_BUILD_TYPE=RELEASE ..
-- The CXX compiler identification is GNU 10.2.1
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- The Fortran compiler identification is GNU 10.2.1
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/bin/gfortran - skipped
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 - yes
-- The C compiler identification is GNU 10.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - not found
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - found
-- Found BLAS: /usr/lib/arm-linux-gnueabihf/libblas.so  
hittade /usr/lib/arm-linux-gnueabihf/libblas.so
-- Looking for Fortran cheev
-- Looking for Fortran cheev - not found
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- A library with LAPACK API found.
-- Found BISON: /usr/bin/bison (found version "3.7.6") 
-- Found FLEX: /usr/bin/flex (found version "2.6.4") 
-- Found MPI_C: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so (found version "3.1") 
-- Found MPI_CXX: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so (found version "3.1") 
-- Found MPI_Fortran: /usr/lib/arm-linux-gnueabihf/libmpi_usempif08.so (found version "3.1") 
-- Found MPI: TRUE (found version "3.1")  
-- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.40.0") found components: mpi serialization 
-- Found LibXml2: /usr/lib/arm-linux-gnueabihf/libxml2.so (found version "2.9.10") 
mpilib is /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi;/usr/lib/arm-linux-gnueabihf/openmpi/include 
included path is  
CMake Warning (dev) at src/cxx/CMakeLists.txt:366 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "primeDTLSR".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  src/cxx/applications/primeDTLSR/CMakeLists.txt:30 (prime_add_tests)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at src/cxx/CMakeLists.txt:366 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "primeDLRS".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  src/cxx/applications/primeDLRS/CMakeLists.txt:27 (prime_add_tests)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at src/cxx/CMakeLists.txt:366 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "showtree".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  src/cxx/tools/showtree/CMakeLists.txt:12 (prime_add_tests)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at CMakeLists.txt:120 (if):
  Policy CMP0053 is not set: Simplify variable reference and escape sequence
  evaluation.  Run "cmake --help-policy CMP0053" for policy details.  Use the
  cmake_policy command to set the policy and suppress this warning.

  For input:

    '@CMAKE_SOURCE_DIR@/excluded_from_release'

  the old evaluation rules produce:

    '/<<PKGBUILDDIR>>/excluded_from_release'

  but the new evaluation rules produce:

    '@CMAKE_SOURCE_DIR@/excluded_from_release'

  Using the old result for compatibility since the policy is not set.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_INSTALL_LIBDIR
    CMAKE_INSTALL_LOCALSTATEDIR
    CMAKE_INSTALL_RUNSTATEDIR
    CMAKE_INSTALL_SYSCONFDIR


-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_build -a -O--buildsystem=cmake
	cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make  -f src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/build.make src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[  1%] [BISON][MyParser2] Building parser with bison 3.7.6
[  1%] [FLEX][MyScanner2] Building scanner with flex 2.6.4
cd /<<PKGBUILDDIR>>/src/cxx/libraries/sfile && /usr/bin/flex -o/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/lexer.c seqreader.l
cd /<<PKGBUILDDIR>>/src/cxx/libraries/sfile && /usr/bin/bison -d -d -o /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/gb.tab.c gb.y
gb.y: warning: 1 nonterminal useless in grammar [-Wother]
gb.y: warning: 1 rule useless in grammar [-Wother]
gb.y:258.1-12: warning: nonterminal useless in grammar: darwin_entry [-Wother]
  258 | darwin_entry	: TEXT {$$ = NULL; /* Not implemented yet */}
      | ^~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/libraries/sfile /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/DependInfo.cmake --color=
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/DependInfo.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/depend.internal".
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/depend.internal".
Scanning dependencies of target prime-phylo-sfile
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make  -f src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/build.make src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[  2%] Building C object src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/gbread.c.o
[  2%] Building C object src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/sfile.c.o
[  3%] Building C object src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/lexer.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_sfile_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile -I/<<PKGBUILDDIR>>/src/cxx/libraries/sfile -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo-sfile.dir/sfile.c.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_sfile_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile -I/<<PKGBUILDDIR>>/src/cxx/libraries/sfile -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo-sfile.dir/gbread.c.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/gbread.c
[  3%] Building C object src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/gb.tab.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_sfile_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile -I/<<PKGBUILDDIR>>/src/cxx/libraries/sfile -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo-sfile.dir/lexer.c.o -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/lexer.c
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_sfile_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile -I/<<PKGBUILDDIR>>/src/cxx/libraries/sfile -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo-sfile.dir/gb.tab.c.o -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/gb.tab.c
/<<PKGBUILDDIR>>/src/cxx/libraries/sfile/gbread.c: In function 'main':
/<<PKGBUILDDIR>>/src/cxx/libraries/sfile/gbread.c:17:10: warning: implicit declaration of function 'strcmp' [-Wimplicit-function-declaration]
   17 |     if (!strcmp(argv[opt], "-d")) {
      |          ^~~~~~
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/gb.tab.c: In function 'yyparse':
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/gb.tab.c:1105:16: warning: implicit declaration of function 'yylex' [-Wimplicit-function-declaration]
 1105 |       yychar = yylex ();
      |                ^~~~~
gb.y: In function 'yyerror':
/<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c: In function 'seq_print':
gb.y:291:70: warning: implicit declaration of function 'linenumber' [-Wimplicit-function-declaration]
/<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c:265:14: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat=]
  265 |       printf("%9d", char_counter + 1);
      |              ^~~~~  ~~~~~~~~~~~~~~~~
      |                                  |
      |                                  long int
/<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c:212:15: warning: variable 'date' set but not used [-Wunused-but-set-variable]
  212 |   char *top, *date;
      |               ^~~~
gb.y: In function 'add_to_seq':
gb.y:402:9: warning: unused variable 'new_buf' [-Wunused-variable]
seqreader.l: In function 'seq_read':
seqreader.l:270:9: warning: unused variable 'code' [-Wunused-variable]
At top level:
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/lexer.c:1864:16: warning: 'input' defined but not used [-Wunused-function]
 1864 |     static int input  (void)
      |                ^~~~~
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile/lexer.c:1821:17: warning: 'yyunput' defined but not used [-Wunused-function]
 1821 |     static void yyunput (int c, char * yy_bp )
      |                 ^~~~~~~
[  4%] Linking C shared library libprime-phylo-sfile.so
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile && /usr/bin/cmake -E cmake_link_script CMakeFiles/prime-phylo-sfile.dir/link.txt --verbose=1
/usr/bin/cc -fPIC -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libprime-phylo-sfile.so -o libprime-phylo-sfile.so CMakeFiles/prime-phylo-sfile.dir/gbread.c.o CMakeFiles/prime-phylo-sfile.dir/sfile.c.o CMakeFiles/prime-phylo-sfile.dir/lexer.c.o CMakeFiles/prime-phylo-sfile.dir/gb.tab.c.o  -Wl,-rpath,:::::::::::::::::::: 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[  4%] Built target prime-phylo-sfile
make  -f src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/build.make src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[  5%] [BISON][MyParser] Building parser with bison 3.7.6
[  5%] [FLEX][MyScanner] Building scanner with flex 2.6.4
cd /<<PKGBUILDDIR>>/src/cxx/libraries/prime && /usr/bin/flex -Pyytree_ -o/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/lexer.c NHX.l
cd /<<PKGBUILDDIR>>/src/cxx/libraries/prime && /usr/bin/bison -d -y -p yytree_ -d -o /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/NHXparse.c NHXparse.y
NHXparse.y:105.1-7: warning: POSIX Yacc does not support %expect [-Wyacc]
  105 | %expect 4 
      | ^~~~~~~
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/libraries/prime /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DependInfo.cmake --color=
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DependInfo.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/depend.internal".
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/depend.internal".
Scanning dependencies of target prime-phylo
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make  -f src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/build.make src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[  6%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXnode.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/NHXnode.c.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NHXnode.c
[  6%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXtree.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/NHXtree.c.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NHXtree.c
[  7%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXannotation.c.o
[  7%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/lexer.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/NHXannotation.c.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NHXannotation.c
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/lexer.c.o -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/lexer.c
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/NHXnode.c: In function 'NHX_debug_print':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/NHXnode.c:155:25: warning: format '%d' expects argument of type 'int', but argument 3 has type 'double' [-Wformat=]
  155 |  fprintf(stderr, "BW:\t%d\n", l->arg.t);
      |                        ~^     ~~~~~~~~
      |                         |           |
      |                         int         double
      |                        %f
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/lexer.c:1597:16: warning: 'input' defined but not used [-Wunused-function]
 1597 |     static int input  (void)
      |                ^~~~~
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/lexer.c:1554:17: warning: 'yyunput' defined but not used [-Wunused-function]
 1554 |     static void yyunput (int c, char * yy_bp )
      |                 ^~~~~~~
In file included from /usr/include/string.h:495,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NHXannotation.c:4:
In function 'strncpy',
    inlined from 'new_annotation' at /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NHXannotation.c:80:3:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 5 equals destination size [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[  8%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXparse.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/NHXparse.c.o -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/NHXparse.c
[  8%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/AnError.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/AnError.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/AnError.cc
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/NHXparse.c: In function 'yytree_parse':
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/NHXparse.c:69:25: warning: implicit declaration of function 'yytree_lex' [-Wimplicit-function-declaration]
   69 | #define yylex           yytree_lex
      |                         ^~~~~~~~~~
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime/NHXparse.c:1121:16: note: in expansion of macro 'yylex'
 1121 |       yychar = yylex ();
      |                ^~~~~
NHXparse.y: In function 'read_tree':
NHXparse.y:351:5: warning: implicit declaration of function 'close'; did you mean 'pclose'? [-Wimplicit-function-declaration]
NHXparse.y: In function 'read_tree_string':
NHXparse.y:399:3: warning: implicit declaration of function 'read_from_string'; did you mean 'read_tree_string'? [-Wimplicit-function-declaration]
NHXparse.y:404:3: warning: implicit declaration of function 'close_string_buffer' [-Wimplicit-function-declaration]
[  9%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Beep.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/Beep.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Beep.cc
[ 10%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BeepOption.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/BeepOption.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepOption.cc
[ 10%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Hacks.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/Hacks.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Hacks.cc
[ 11%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ODESolver.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/ODESolver.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.cc
[ 11%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/PRNG.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/PRNG.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/PRNG.cc
[ 12%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/PrimeOptionMap.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/PrimeOptionMap.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/PrimeOptionMap.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.cc:4:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:359:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::C2' of non-integral type [-fpermissive]
  359 |  static const Real C2 =       1.0 /      5.0;
      |                    ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:360:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::C3' of non-integral type [-fpermissive]
  360 |  static const Real C3 =       3.0 /     10.0;
      |                    ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:361:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::C4' of non-integral type [-fpermissive]
  361 |  static const Real C4 =       4.0 /      5.0;
      |                    ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:362:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::C5' of non-integral type [-fpermissive]
  362 |  static const Real C5 =       8.0 /      9.0;
      |                    ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:363:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A21' of non-integral type [-fpermissive]
  363 |  static const Real A21 =      1.0 /      5.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:364:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A31' of non-integral type [-fpermissive]
  364 |  static const Real A31 =      3.0 /     40.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:365:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A32' of non-integral type [-fpermissive]
  365 |  static const Real A32 =      9.0 /     40.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:366:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A41' of non-integral type [-fpermissive]
  366 |  static const Real A41 =     44.0 /     45.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:367:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A42' of non-integral type [-fpermissive]
  367 |  static const Real A42 =    -56.0 /     15.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:368:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A43' of non-integral type [-fpermissive]
  368 |  static const Real A43 =     32.0 /      9.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:369:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A51' of non-integral type [-fpermissive]
  369 |  static const Real A51 =  19372.0 /   6561.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:370:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A52' of non-integral type [-fpermissive]
  370 |     static const Real A52 = -25360.0 /   2187.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:371:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A53' of non-integral type [-fpermissive]
  371 |     static const Real A53 =  64448.0 /   6561.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:372:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A54' of non-integral type [-fpermissive]
  372 |     static const Real A54 =   -212.0 /    729.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:373:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A61' of non-integral type [-fpermissive]
  373 |     static const Real A61 =   9017.0 /   3168.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:374:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A62' of non-integral type [-fpermissive]
  374 |     static const Real A62 =   -355.0 /     33.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:375:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A63' of non-integral type [-fpermissive]
  375 |     static const Real A63 =  46732.0 /   5247.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:376:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A64' of non-integral type [-fpermissive]
  376 |     static const Real A64 =     49.0 /    176.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:377:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A65' of non-integral type [-fpermissive]
  377 |     static const Real A65 =  -5103.0 /  18656.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:378:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A71' of non-integral type [-fpermissive]
  378 |     static const Real A71 =     35.0 /    384.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:379:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A73' of non-integral type [-fpermissive]
  379 |     static const Real A73 =    500.0 /   1113.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:380:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A74' of non-integral type [-fpermissive]
  380 |     static const Real A74 =    125.0 /    192.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:381:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A75' of non-integral type [-fpermissive]
  381 |     static const Real A75 =  -2187.0 /   6784.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:382:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A76' of non-integral type [-fpermissive]
  382 |     static const Real A76 =     11.0 /     84.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:383:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E1' of non-integral type [-fpermissive]
  383 |     static const Real E1 =      71.0 /  57600.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:384:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E3' of non-integral type [-fpermissive]
  384 |     static const Real E3 =     -71.0 /  16695.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:385:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E4' of non-integral type [-fpermissive]
  385 |     static const Real E4 =      71.0 /   1920.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:386:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E5' of non-integral type [-fpermissive]
  386 |     static const Real E5 =  -17253.0 / 339200.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:387:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E6' of non-integral type [-fpermissive]
  387 |     static const Real E6 =      22.0 /    525.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:388:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E7' of non-integral type [-fpermissive]
  388 |     static const Real E7 =      -1.0 /     40.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:391:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D1' of non-integral type [-fpermissive]
  391 |     static const Real D1 =  -12715105075.0 /  11282082432.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:392:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D3' of non-integral type [-fpermissive]
  392 |     static const Real D3 =   87487479700.0 /  32700410799.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:393:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D4' of non-integral type [-fpermissive]
  393 |     static const Real D4 =  -10690763975.0 /   1880347072.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:394:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D5' of non-integral type [-fpermissive]
  394 |     static const Real D5 =  701980252875.0 / 199316789632.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:395:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D6' of non-integral type [-fpermissive]
  395 |     static const Real D6 =   -1453857185.0 /    822651844.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:396:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D7' of non-integral type [-fpermissive]
  396 |     static const Real D7 =      69997945.0 /     29380423.0;
      |                       ^~
[ 12%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ProbabilityModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/ProbabilityModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ProbabilityModel.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/PrimeOptionMap.cc:3:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/PrimeOption.hh: In member function 'void beep::UserSubstitutionMatrixOption::parseParams(std::string&, unsigned int, std::vector<beep::UserSubstMatrixParams>&)':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/PrimeOption.hh:405:23: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=]
  405 |  catch(std::exception e)
      |                       ^
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/PrimeOption.hh:423:23: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=]
  423 |  catch(std::exception e)
      |                       ^
[ 13%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DiscreteGamma.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/DiscreteGamma.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DiscreteGamma.cc
[ 14%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Probability.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/Probability.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Probability.cc
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepOption.hh:10,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepOption.cc:5:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepOption.hh:10,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepOption.cc:5:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void beep::option::BeepOptionMap::parseUserSubstModel(beep::option::UserSubstModelOption*, int&, int, char**)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 14%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Tokenizer.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/Tokenizer.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tokenizer.cc
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/PrimeOptionMap.hh:12,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/PrimeOptionMap.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/PrimeOptionMap.hh:12,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/PrimeOptionMap.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void beep::TmplPrimeOption<T>::parseParams(std::string&, unsigned int, std::vector<T>&) [with T = double]':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 15%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TimeEstimator.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/TimeEstimator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TimeEstimator.cc
/usr/include/c++/10/bits/stl_vector.h: In member function 'void beep::UserSubstitutionMatrixOption::parseParams(std::string&, unsigned int, std::vector<beep::UserSubstMatrixParams>&)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 15%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BranchSwapping.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/BranchSwapping.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BranchSwapping.cc
/usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector<double> beep::option::BeepOptionMap::getDoubleX3(std::string)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 16%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DiscTree.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/DiscTree.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DiscTree.cc
[ 17%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeDiscPtMaps.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/EdgeDiscPtMaps.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMaps.cc
[ 17%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeDiscTree.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/EdgeDiscTree.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscTree.cc
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DiscTree.hh:6,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DiscTree.cc:6:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void beep::DiscTree::createGridTimes()':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 18%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochPtMaps.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/EpochPtMaps.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc
[ 18%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochPtSet.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/EpochPtSet.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtSet.cc
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtSet.hh:6,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtSet.cc:5:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtSet.hh:6,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtSet.cc:5:
/usr/include/c++/10/bits/stl_vector.h: In constructor 'beep::EpochPtSet::EpochPtSet(std::vector<const beep::Node*>, beep::Real, beep::Real, unsigned int)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtSet.hh:6,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtSet.cc:5:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtSet.hh:6,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtSet.cc:5:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 19%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochTree.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/EpochTree.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochTree.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:9,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc:5:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochTree.hh:54:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::EpochTree::MIN_SPLICE_DELTA' of non-integral type [-fpermissive]
   54 |  static const Real MIN_SPLICE_DELTA = 0.0001;
      |                    ^~~~~~~~~~~~~~~~
[ 19%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/InvMRCA.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/InvMRCA.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/InvMRCA.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochTree.cc:7:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochTree.hh:54:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::EpochTree::MIN_SPLICE_DELTA' of non-integral type [-fpermissive]
   54 |  static const Real MIN_SPLICE_DELTA = 0.0001;
      |                    ^~~~~~~~~~~~~~~~
[ 20%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Node.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/Node.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Node.cc
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc:5:
/usr/include/c++/10/bits/vector.tcc: In function 'void std::vector<_Tp, _Alloc>::_M_assign_aux(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:300:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  300 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:300:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function 'void std::vector<_Tp, _Alloc>::_M_assign_aux(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const beep::Probability*, std::vector<beep::Probability, std::allocator<beep::Probability> > >; _Tp = beep::Probability; _Alloc = std::allocator<beep::Probability>]':
/usr/include/c++/10/bits/vector.tcc:300:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const beep::Probability*, std::vector<beep::Probability, std::allocator<beep::Probability> > >' changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc:300:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const beep::Probability*, std::vector<beep::Probability, std::allocator<beep::Probability> > >' changed in GCC 7.1
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc:5:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh: In member function 'void beep::EpochPtMap<T>::set(unsigned int, unsigned int, beep::EpochPtMap<T>::const_iterator) [with T = double]':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:162:14: note: parameter passing for argument of type 'beep::EpochPtMap<double>::const_iterator' {aka 'std::vector<double, std::allocator<double> >::const_iterator'} changed in GCC 7.1
  162 |  inline void set(unsigned i, unsigned j, const_iterator start)
      |              ^~~
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc:5:
/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
 1628 |  { _M_assign_aux(__first, __last, std::__iterator_category(__first)); }
      |    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc:5:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh: In member function 'void beep::EpochPtMap<T>::set(const EpochTime&, beep::EpochPtMap<T>::const_iterator) [with T = double]':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:173:14: note: parameter passing for argument of type 'beep::EpochPtMap<double>::const_iterator' {aka 'std::vector<double, std::allocator<double> >::const_iterator'} changed in GCC 7.1
  173 |  inline void set(const EpochTime& tm, const_iterator start)
      |              ^~~
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc:5:
/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
 1628 |  { _M_assign_aux(__first, __last, std::__iterator_category(__first)); }
      |    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc:5:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh: In member function 'void beep::EpochPtMap<T>::setWithMin(unsigned int, unsigned int, beep::EpochPtMap<T>::const_iterator, const T&) [with T = double]':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:188:14: note: parameter passing for argument of type 'beep::EpochPtMap<double>::const_iterator' {aka 'std::vector<double, std::allocator<double> >::const_iterator'} changed in GCC 7.1
  188 |  inline void setWithMin(unsigned i, unsigned j, const_iterator start, const T& lowerBound)
      |              ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:188:14: note: parameter passing for argument of type 'beep::EpochPtMap<double>::const_iterator' {aka 'std::vector<double, std::allocator<double> >::const_iterator'} changed in GCC 7.1
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh: In member function 'void beep::EpochPtMap<T>::setWithMax(unsigned int, unsigned int, beep::EpochPtMap<T>::const_iterator, const T&) [with T = double]':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:206:14: note: parameter passing for argument of type 'beep::EpochPtMap<double>::const_iterator' {aka 'std::vector<double, std::allocator<double> >::const_iterator'} changed in GCC 7.1
  206 |  inline void setWithMax(unsigned i, unsigned j, const_iterator start, const T& upperBound)
      |              ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:206:14: note: parameter passing for argument of type 'beep::EpochPtMap<double>::const_iterator' {aka 'std::vector<double, std::allocator<double> >::const_iterator'} changed in GCC 7.1
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh: In member function 'void beep::EpochPtPtMap<T>::set(unsigned int, unsigned int, unsigned int, unsigned int, beep::EpochPtPtMap<T>::const_iterator) [with T = double]':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:403:14: note: parameter passing for argument of type 'beep::EpochPtPtMap<double>::const_iterator' {aka 'std::vector<double, std::allocator<double> >::const_iterator'} changed in GCC 7.1
  403 |  inline void set(unsigned i, unsigned j, unsigned p, unsigned q,
      |              ^~~
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc:5:
/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
 1628 |  { _M_assign_aux(__first, __last, std::__iterator_category(__first)); }
      |    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc:5:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh: In member function 'void beep::EpochPtPtMap<T>::set(beep::EpochTime, beep::EpochTime, beep::EpochPtPtMap<T>::const_iterator) [with T = double]':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:418:14: note: parameter passing for argument of type 'beep::EpochPtPtMap<double>::const_iterator' {aka 'std::vector<double, std::allocator<double> >::const_iterator'} changed in GCC 7.1
  418 |  inline void set(EpochTime tm1, EpochTime tm2, const_iterator start)
      |              ^~~
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc:5:
/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
 1628 |  { _M_assign_aux(__first, __last, std::__iterator_category(__first)); }
      |    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc:5:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh: In member function 'void beep::EpochPtPtMap<T>::setWithMin(unsigned int, unsigned int, unsigned int, unsigned int, beep::EpochPtPtMap<T>::const_iterator, const T&) [with T = double]':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:438:14: note: parameter passing for argument of type 'beep::EpochPtPtMap<double>::const_iterator' {aka 'std::vector<double, std::allocator<double> >::const_iterator'} changed in GCC 7.1
  438 |  inline void setWithMin(unsigned i, unsigned j, unsigned p, unsigned q,
      |              ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh: In member function 'void beep::EpochPtPtMap<T>::setWithMax(unsigned int, unsigned int, unsigned int, unsigned int, beep::EpochPtPtMap<T>::const_iterator, const T&) [with T = double]':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:461:14: note: parameter passing for argument of type 'beep::EpochPtPtMap<double>::const_iterator' {aka 'std::vector<double, std::allocator<double> >::const_iterator'} changed in GCC 7.1
  461 |  inline void setWithMax(unsigned i, unsigned j, unsigned p, unsigned q,
      |              ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh: In member function 'void beep::EpochPtMap<T>::set(unsigned int, unsigned int, beep::EpochPtMap<T>::const_iterator) [with T = beep::Probability]':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:162:14: note: parameter passing for argument of type 'beep::EpochPtMap<beep::Probability>::const_iterator' {aka 'std::vector<beep::Probability, std::allocator<beep::Probability> >::const_iterator'} changed in GCC 7.1
  162 |  inline void set(unsigned i, unsigned j, const_iterator start)
      |              ^~~
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc:5:
/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const beep::Probability*, std::vector<beep::Probability, std::allocator<beep::Probability> > >' changed in GCC 7.1
 1628 |  { _M_assign_aux(__first, __last, std::__iterator_category(__first)); }
      |    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc:5:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh: In member function 'void beep::EpochPtMap<T>::set(const EpochTime&, beep::EpochPtMap<T>::const_iterator) [with T = beep::Probability]':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:173:14: note: parameter passing for argument of type 'beep::EpochPtMap<beep::Probability>::const_iterator' {aka 'std::vector<beep::Probability, std::allocator<beep::Probability> >::const_iterator'} changed in GCC 7.1
  173 |  inline void set(const EpochTime& tm, const_iterator start)
      |              ^~~
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc:5:
/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const beep::Probability*, std::vector<beep::Probability, std::allocator<beep::Probability> > >' changed in GCC 7.1
 1628 |  { _M_assign_aux(__first, __last, std::__iterator_category(__first)); }
      |    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc:5:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh: In member function 'void beep::EpochPtMap<T>::setWithMin(unsigned int, unsigned int, beep::EpochPtMap<T>::const_iterator, const T&) [with T = beep::Probability]':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:188:14: note: parameter passing for argument of type 'beep::EpochPtMap<beep::Probability>::const_iterator' {aka 'std::vector<beep::Probability, std::allocator<beep::Probability> >::const_iterator'} changed in GCC 7.1
  188 |  inline void setWithMin(unsigned i, unsigned j, const_iterator start, const T& lowerBound)
      |              ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:188:14: note: parameter passing for argument of type 'beep::EpochPtMap<beep::Probability>::const_iterator' {aka 'std::vector<beep::Probability, std::allocator<beep::Probability> >::const_iterator'} changed in GCC 7.1
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh: In member function 'void beep::EpochPtMap<T>::setWithMax(unsigned int, unsigned int, beep::EpochPtMap<T>::const_iterator, const T&) [with T = beep::Probability]':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:206:14: note: parameter passing for argument of type 'beep::EpochPtMap<beep::Probability>::const_iterator' {aka 'std::vector<beep::Probability, std::allocator<beep::Probability> >::const_iterator'} changed in GCC 7.1
  206 |  inline void setWithMax(unsigned i, unsigned j, const_iterator start, const T& upperBound)
      |              ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh: In member function 'void beep::EpochPtPtMap<T>::set(unsigned int, unsigned int, unsigned int, unsigned int, beep::EpochPtPtMap<T>::const_iterator) [with T = beep::Probability]':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:403:14: note: parameter passing for argument of type 'beep::EpochPtPtMap<beep::Probability>::const_iterator' {aka 'std::vector<beep::Probability, std::allocator<beep::Probability> >::const_iterator'} changed in GCC 7.1
  403 |  inline void set(unsigned i, unsigned j, unsigned p, unsigned q,
      |              ^~~
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc:5:
/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const beep::Probability*, std::vector<beep::Probability, std::allocator<beep::Probability> > >' changed in GCC 7.1
 1628 |  { _M_assign_aux(__first, __last, std::__iterator_category(__first)); }
      |    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc:5:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh: In member function 'void beep::EpochPtPtMap<T>::set(beep::EpochTime, beep::EpochTime, beep::EpochPtPtMap<T>::const_iterator) [with T = beep::Probability]':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:418:14: note: parameter passing for argument of type 'beep::EpochPtPtMap<beep::Probability>::const_iterator' {aka 'std::vector<beep::Probability, std::allocator<beep::Probability> >::const_iterator'} changed in GCC 7.1
  418 |  inline void set(EpochTime tm1, EpochTime tm2, const_iterator start)
      |              ^~~
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc:5:
/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const beep::Probability*, std::vector<beep::Probability, std::allocator<beep::Probability> > >' changed in GCC 7.1
 1628 |  { _M_assign_aux(__first, __last, std::__iterator_category(__first)); }
      |    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc:5:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh: In member function 'void beep::EpochPtPtMap<T>::setWithMin(unsigned int, unsigned int, unsigned int, unsigned int, beep::EpochPtPtMap<T>::const_iterator, const T&) [with T = beep::Probability]':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:438:14: note: parameter passing for argument of type 'beep::EpochPtPtMap<beep::Probability>::const_iterator' {aka 'std::vector<beep::Probability, std::allocator<beep::Probability> >::const_iterator'} changed in GCC 7.1
  438 |  inline void setWithMin(unsigned i, unsigned j, unsigned p, unsigned q,
      |              ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh: In member function 'void beep::EpochPtPtMap<T>::setWithMax(unsigned int, unsigned int, unsigned int, unsigned int, beep::EpochPtPtMap<T>::const_iterator, const T&) [with T = beep::Probability]':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:461:14: note: parameter passing for argument of type 'beep::EpochPtPtMap<beep::Probability>::const_iterator' {aka 'std::vector<beep::Probability, std::allocator<beep::Probability> >::const_iterator'} changed in GCC 7.1
  461 |  inline void setWithMax(unsigned i, unsigned j, unsigned p, unsigned q,
      |              ^~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochTree.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochTree.cc:7:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {beep::EpochPtSet}; _Tp = beep::EpochPtSet; _Alloc = std::allocator<beep::EpochPtSet>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<beep::EpochPtSet>::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {beep::EpochPtSet}; _Tp = beep::EpochPtSet; _Alloc = std::allocator<beep::EpochPtSet>]':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<beep::EpochPtSet*, std::vector<beep::EpochPtSet> >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void beep::EpochTree::update()':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<beep::EpochPtSet*, std::vector<beep::EpochPtSet> >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 21%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NodeMap.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/NodeMap.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NodeMap.cc
[ 21%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NodeNodeMap.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/NodeNodeMap.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NodeNodeMap.cc
[ 22%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/RandomTreeGenerator.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/RandomTreeGenerator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/RandomTreeGenerator.cc
[ 22%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/StrStrMap.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/StrStrMap.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/StrStrMap.cc
[ 23%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Tree.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/Tree.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.cc
[ 23%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeAnalysis.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/TreeAnalysis.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeAnalysis.cc
[ 24%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeDiscretizer.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/TreeDiscretizer.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizer.cc
[ 25%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeDiscretizers.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/TreeDiscretizers.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizers.cc
[ 25%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/TreeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.cc
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizers.hh:6,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizers.cc:4:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' changed in GCC 7.1
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizer.hh:6,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizer.cc:6:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizers.hh:6,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizers.cc:4:
/usr/include/c++/10/bits/stl_vector.h: In member function 'virtual void beep::StepSizeEdgeDiscretizer::discretizeEdge(const beep::Node*, std::vector<double, std::allocator<double> >&) const':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizers.hh:6,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizers.cc:4:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizers.hh:6,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizers.cc:4:
/usr/include/c++/10/bits/stl_vector.h: In member function 'virtual void beep::EquiSplitEdgeDiscretizer::discretizeEdge(const beep::Node*, std::vector<double, std::allocator<double> >&) const':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizers.hh:6,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizers.cc:4:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizer.hh:6,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizer.cc:6:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void beep::TreeDiscretizerOld::update()':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizer.hh:6,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizer.cc:6:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizer.hh:6,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizer.cc:6:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizer.hh:6,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizer.cc:6:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 26%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeIO.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/TreeIO.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeIO.cc
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.cc:7:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' changed in GCC 7.1
  509 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
[ 26%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeInputOutput.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/TreeInputOutput.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeInputOutput.cc
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.cc:7:
/usr/include/c++/10/bits/stl_vector.h: In member function 'virtual beep::Node* beep::Tree::addNode(beep::Node*, beep::Node*, unsigned int, std::string)':
/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  960 |    _M_fill_insert(end(), __new_size - size(), __x);
      |    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  960 |    _M_fill_insert(end(), __new_size - size(), __x);
      |    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  960 |    _M_fill_insert(end(), __new_size - size(), __x);
      |    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.cc: In constructor 'beep::TreeMCMC::TreeMCMC(beep::MCMCModel&, beep::Tree&, const Real&)':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.cc:26:15: warning: passing NULL to non-pointer argument 1 of 'beep::RealVector::RealVector(unsigned int)' [-Wconversion-null]
   26 |     old_times(NULL),
      |               ^~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BranchSwapping.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.hh:6,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:257:25: note:   declared here
  257 |     RealVector(unsigned n_elems) //!< All elems are initialized to zero.
      |                ~~~~~~~~~^~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.cc:27:15: warning: passing NULL to non-pointer argument 1 of 'beep::RealVector::RealVector(unsigned int)' [-Wconversion-null]
   27 |     old_rates(NULL),
      |               ^~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BranchSwapping.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.hh:6,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:257:25: note:   declared here
  257 |     RealVector(unsigned n_elems) //!< All elems are initialized to zero.
      |                ~~~~~~~~~^~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.cc:28:17: warning: passing NULL to non-pointer argument 1 of 'beep::RealVector::RealVector(unsigned int)' [-Wconversion-null]
   28 |     old_lengths(NULL),
      |                 ^~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BranchSwapping.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.hh:6,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:257:25: note:   declared here
  257 |     RealVector(unsigned n_elems) //!< All elems are initialized to zero.
      |                ~~~~~~~~~^~~~~~~
[ 27%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeIOTraits.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/TreeIOTraits.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeIOTraits.cc
[ 28%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreePerturbationEvent.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/TreePerturbationEvent.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreePerturbationEvent.cc
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BranchSwapping.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.hh:6,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {beep::Probability}; _Tp = beep::Probability; _Alloc = std::allocator<beep::Probability>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<beep::Probability, std::allocator<beep::Probability> >::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void beep::OrthologyMCMC::estimateOrthology(bool)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<beep::Probability*, std::vector<beep::Probability, std::allocator<beep::Probability> > >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeInputOutput.cc: In member function 'void beep::TreeInputOutput::fromFileStream(FILE*, beep::inputFormats)':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeInputOutput.cc:118:22: warning: converting to non-pointer type 'char' from NULL [-Wconversion-null]
  118 |    buf[ bytes_read ]=NULL;
      |                      ^~~~
[ 28%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ConstRateModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/ConstRateModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ConstRateModel.cc
[ 29%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Density2P_common.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/Density2P_common.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.cc
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeIO.hh:10,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeIO.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const beep::Tree&}; _Tp = beep::Tree; _Alloc = std::allocator<beep::Tree>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<beep::Tree>::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeInputOutput.hh:13,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeInputOutput.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const beep::Tree&}; _Tp = beep::Tree; _Alloc = std::allocator<beep::Tree>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<beep::Tree>::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeInputOutput.cc: In member function 'beep::Node* beep::TreeInputOutput::extendBeepTree(beep::Tree&, xmlNodePtr, const beep::TreeIOTraits&, std::vector<beep::SetOfNodes>*, beep::StrStrMap*, std::map<const beep::Node*, beep::Node*>*, std::map<const beep::Node*, unsigned int>*)':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeInputOutput.cc:1049:22: warning: 'idInt' may be used uninitialized in this function [-Wmaybe-uninitialized]
 1049 |  new_node = S.addNode(l, r, idInt, name);
      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.cc:5:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/InvGaussDensity.hh:89:25: warning: 'constexpr' needed for in-class initialization of static data member 'const double beep::InvGaussDensity::pi' of non-integral type [-fpermissive]
   89 |     static const double pi = 3.14159265358979; //!< math.constant \f$\pi\f$
      |                         ^~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.cc:6:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/LogNormDensity.hh:81:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::LogNormDensity::pi' of non-integral type [-fpermissive]
   81 |     static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$.
      |                       ^~
[ 29%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Density2P_positive.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/Density2P_positive.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_positive.cc
[ 30%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Density2PMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/Density2PMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2PMCMC.cc
[ 30%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeRateMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/EdgeRateMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeRateMCMC.cc
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeIO.hh:10,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeIO.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector<beep::Tree> beep::TreeIO::readAllBeepTrees(const beep::TreeIOTraits&, std::vector<beep::SetOfNodes>*, std::vector<beep::StrStrMap>*)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<beep::Tree*, std::vector<beep::Tree> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 31%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeRateMCMC_common.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/EdgeRateMCMC_common.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeRateMCMC_common.cc
[ 32%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeRateModel_common.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/EdgeRateModel_common.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeRateModel_common.cc
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeInputOutput.hh:13,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeInputOutput.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector<beep::Tree> beep::TreeInputOutput::readAllBeepTrees(beep::TreeIOTraits&, std::vector<beep::SetOfNodes>*, std::vector<beep::StrStrMap>*)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<beep::Tree*, std::vector<beep::Tree> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeRateMCMC_common.cc: In member function 'void beep::EdgeRateMCMC_common<Templ_EdgeRateModel>::generateRates() [with Templ_EdgeRateModel = beep::gbmRateModel]':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeRateMCMC_common.cc:104:30: warning: unused variable 'fparam' [-Wunused-variable]
  104 |                         Real fparam = std::log(rate) -  0.5 * variance * (rtime - 3.0 * ltime);
      |                              ^~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeRateMCMC_common.cc:105:30: warning: unused variable 'rparam' [-Wunused-variable]
  105 |                         Real rparam = variance * (rtime + ltime);
      |                              ^~~~~~
[ 32%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeWeightHandler.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/EdgeWeightHandler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightHandler.cc
[ 33%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeWeightMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/EdgeWeightMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightMCMC.cc
[ 33%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/GammaDensity.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/GammaDensity.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaDensity.cc
[ 34%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/InvGaussDensity.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/InvGaussDensity.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/InvGaussDensity.cc
[ 34%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LengthRateModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/LengthRateModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LengthRateModel.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightMCMC.cc: In member function 'void beep::EdgeWeightMCMC::showCurrentTree()':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightMCMC.cc:106:27: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  106 |         for (int i = 0; i < t.size(); i++)
      |                         ~~^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/InvGaussDensity.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/InvGaussDensity.hh:89:25: warning: 'constexpr' needed for in-class initialization of static data member 'const double beep::InvGaussDensity::pi' of non-integral type [-fpermissive]
   89 |     static const double pi = 3.14159265358979; //!< math.constant \f$\pi\f$
      |                         ^~
[ 35%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LogNormDensity.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/LogNormDensity.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LogNormDensity.cc
[ 36%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NormalDensity.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/NormalDensity.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NormalDensity.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LogNormDensity.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/LogNormDensity.hh:81:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::LogNormDensity::pi' of non-integral type [-fpermissive]
   81 |     static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$.
      |                       ^~
[ 36%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/UniformDensity.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/UniformDensity.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/UniformDensity.cc
[ 37%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/VarRateModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/VarRateModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/VarRateModel.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NormalDensity.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/NormalDensity.hh:84:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::NormalDensity::pi' of non-integral type [-fpermissive]
   84 |     static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$.
      |                       ^~
[ 37%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SiteRateHandler.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/SiteRateHandler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SiteRateHandler.cc
[ 38%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DummyMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/DummyMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DummyMCMC.cc
[ 38%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MCMCModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/MCMCModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MCMCModel.cc
[ 39%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/StdMCMCModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/StdMCMCModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/StdMCMCModel.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SiteRateHandler.cc:7:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SiteRateHandler.hh:83:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::SiteRateHandler::MAX' of non-integral type [-fpermissive]
   83 |     static const Real MAX = 1e10; //!< rates do not change for alpha > MAX.
      |                       ^~~
[ 40%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MCMCObject.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/MCMCObject.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MCMCObject.cc
[ 40%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SimpleMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/SimpleMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SimpleMCMC.cc
[ 41%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SimpleMCMCPostSample.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/SimpleMCMCPostSample.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SimpleMCMCPostSample.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/StdMCMCModel.cc:5:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/LogNormDensity.hh:81:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::LogNormDensity::pi' of non-integral type [-fpermissive]
   81 |     static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$.
      |                       ^~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/StdMCMCModel.cc:6:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/NormalDensity.hh:84:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::NormalDensity::pi' of non-integral type [-fpermissive]
   84 |     static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$.
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SimpleMCMC.cc: In member function 'virtual void beep::SimpleMCMC::iterate(unsigned int, unsigned int)':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SimpleMCMC.cc:78:14: warning: variable 'check_number_nonupdate' set but not used [-Wunused-but-set-variable]
   78 |     unsigned check_number_nonupdate = 0;
      |              ^~~~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SimpleML.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/SimpleML.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SimpleML.cc
[ 42%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/mcmc/MCMCSampler.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/mcmc/MCMCSampler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/mcmc/MCMCSampler.cc
[ 43%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/mcmc/GSRSampler.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/mcmc/GSRSampler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/mcmc/GSRSampler.cc
[ 43%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/mcmc/PosteriorSampler.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/mcmc/PosteriorSampler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/mcmc/PosteriorSampler.cc
[ 44%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SimpleObserver.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/SimpleObserver.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SimpleObserver.cc
[ 44%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MpiMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/MpiMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MpiMCMC.cc
[ 45%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MultiGSR.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/MultiGSR.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MultiGSR.cc
[ 45%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MpiMultiGSR.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/MpiMultiGSR.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MpiMultiGSR.cc
[ 46%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BDTreeGenerator.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/BDTreeGenerator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BDTreeGenerator.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/MpiMultiGSR.cc: In member function 'virtual beep::Probability beep::MpiMultiGSR::calcDataProbability(unsigned int)':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/MpiMultiGSR.cc:338:6: warning: operation on 'i' may be undefined [-Wsequence-point]
  338 |    p[++i] = geneFams[i]->initStateProb();//updateDataProbability();
      |      ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/MpiMultiGSR.cc:338:6: warning: operation on 'i' may be undefined [-Wsequence-point]
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/MpiMultiGSR.cc:338:6: warning: operation on 'i' may be undefined [-Wsequence-point]
[ 47%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BirthDeathMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/BirthDeathMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathMCMC.cc
In file included from /usr/include/c++/10/map:60,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Beep.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Probability.hh:14,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:8,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BDTreeGenerator.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BDTreeGenerator.cc:1:
/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<beep::Node* const&>, std::tuple<>}; _Key = beep::Node*; _Val = std::pair<beep::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<beep::Node* const, double> >; _Compare = std::less<beep::Node*>; _Alloc = std::allocator<std::pair<beep::Node* const, double> >]':
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree<beep::Node*, std::pair<beep::Node* const, double>, std::_Select1st<std::pair<beep::Node* const, double> >, std::less<beep::Node*>, std::allocator<std::pair<beep::Node* const, double> > >::const_iterator' changed in GCC 7.1
 2458 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Beep.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Probability.hh:14,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:8,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BDTreeGenerator.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BDTreeGenerator.cc:1:
/usr/include/c++/10/bits/stl_map.h: In member function 'beep::Node* beep::BDTreeGenerator::generateV(beep::Node*)':
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<beep::Node*, std::pair<beep::Node* const, double>, std::_Select1st<std::pair<beep::Node* const, double> >, std::less<beep::Node*>, std::allocator<std::pair<beep::Node* const, double> > >::const_iterator' changed in GCC 7.1
  501 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  502 |          std::tuple<const key_type&>(__k),
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  503 |          std::tuple<>());
      |          ~~~~~~~~~~~~~~~             
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<beep::Node*, std::pair<beep::Node* const, double>, std::_Select1st<std::pair<beep::Node* const, double> >, std::less<beep::Node*>, std::allocator<std::pair<beep::Node* const, double> > >::const_iterator' changed in GCC 7.1
  501 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  502 |          std::tuple<const key_type&>(__k),
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  503 |          std::tuple<>());
      |          ~~~~~~~~~~~~~~~             
/usr/include/c++/10/bits/stl_map.h: In member function 'beep::Node* beep::BDTreeGenerator::generateX(beep::Node*, beep::Real)':
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<beep::Node*, std::pair<beep::Node* const, double>, std::_Select1st<std::pair<beep::Node* const, double> >, std::less<beep::Node*>, std::allocator<std::pair<beep::Node* const, double> > >::const_iterator' changed in GCC 7.1
  501 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  502 |          std::tuple<const key_type&>(__k),
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  503 |          std::tuple<>());
      |          ~~~~~~~~~~~~~~~             
/usr/include/c++/10/bits/stl_map.h: In member function 'virtual bool beep::BDTreeGenerator::generateTree(beep::Tree&, bool)':
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<beep::Node*, std::pair<beep::Node* const, double>, std::_Select1st<std::pair<beep::Node* const, double> >, std::less<beep::Node*>, std::allocator<std::pair<beep::Node* const, double> > >::const_iterator' changed in GCC 7.1
  501 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  502 |          std::tuple<const key_type&>(__k),
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  503 |          std::tuple<>());
      |          ~~~~~~~~~~~~~~~             
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<beep::Node*, std::pair<beep::Node* const, double>, std::_Select1st<std::pair<beep::Node* const, double> >, std::less<beep::Node*>, std::allocator<std::pair<beep::Node* const, double> > >::const_iterator' changed in GCC 7.1
  501 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  502 |          std::tuple<const key_type&>(__k),
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  503 |          std::tuple<>());
      |          ~~~~~~~~~~~~~~~             
[ 47%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BirthDeathProbs.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/BirthDeathProbs.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathProbs.cc
[ 48%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/CongruentGuestTreeTimeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/CongruentGuestTreeTimeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/CongruentGuestTreeTimeMCMC.cc
In file included from /usr/include/c++/10/vector:72,
                 from /usr/include/boost/archive/detail/helper_collection.hpp:20,
                 from /usr/include/boost/archive/detail/basic_oarchive.hpp:26,
                 from /usr/include/boost/archive/detail/oserializer.hpp:66,
                 from /usr/include/boost/mpi/detail/mpi_datatype_oarchive.hpp:14,
                 from /usr/include/boost/mpi/detail/mpi_datatype_cache.hpp:13,
                 from /usr/include/boost/mpi/datatype.hpp:27,
                 from /usr/include/boost/mpi/communicator.hpp:22,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MpiMultiGSR.hh:11,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MpiMultiGSR.cc:6:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {beep::SeriGSRvars}; _Tp = beep::SeriGSRvars; _Alloc = std::allocator<beep::SeriGSRvars>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<beep::SeriGSRvars>::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
[ 48%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DiscBirthDeathProbs.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/DiscBirthDeathProbs.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DiscBirthDeathProbs.cc
[ 49%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeDiscBDMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/EdgeDiscBDMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscBDMCMC.cc
/usr/include/c++/10/bits/vector.tcc: In member function 'void beep::MpiMultiGSR::updateGvars(unsigned int)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<beep::SeriGSRvars*, std::vector<beep::SeriGSRvars> >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 49%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeDiscBDProbs.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/EdgeDiscBDProbs.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscBDProbs.cc
[ 50%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeDiscGSR.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/EdgeDiscGSR.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathProbs.hh:9,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DiscBirthDeathProbs.cc:5:
/usr/include/c++/10/bits/vector.tcc: In function 'void std::vector<_Tp, _Alloc>::_M_assign_aux(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<beep::Probability*, std::vector<beep::Probability, std::allocator<beep::Probability> > >; _Tp = beep::Probability; _Alloc = std::allocator<beep::Probability>]':
/usr/include/c++/10/bits/vector.tcc:300:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<beep::Probability*, std::vector<beep::Probability, std::allocator<beep::Probability> > >' changed in GCC 7.1
  300 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:300:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<beep::Probability*, std::vector<beep::Probability, std::allocator<beep::Probability> > >' changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const beep::Probability&}; _Tp = beep::Probability; _Alloc = std::allocator<beep::Probability>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<beep::Probability, std::allocator<beep::Probability> >::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathProbs.hh:9,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DiscBirthDeathProbs.cc:5:
/usr/include/c++/10/bits/stl_vector.h: In copy constructor 'beep::DiscBirthDeathProbs::DiscBirthDeathProbs(const beep::DiscBirthDeathProbs&)':
/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<beep::Probability*, std::vector<beep::Probability, std::allocator<beep::Probability> > >' changed in GCC 7.1
 1628 |  { _M_assign_aux(__first, __last, std::__iterator_category(__first)); }
      |    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathProbs.hh:9,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DiscBirthDeathProbs.cc:5:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {beep::Probability}; _Tp = beep::Probability; _Alloc = std::allocator<beep::Probability>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<beep::Probability, std::allocator<beep::Probability> >::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void beep::DiscBirthDeathProbs::copyLeafBProbs(std::vector<beep::Probability, std::allocator<beep::Probability> >&, unsigned int)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<beep::Probability*, std::vector<beep::Probability, std::allocator<beep::Probability> > >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathProbs.hh:9,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DiscBirthDeathProbs.cc:5:
/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<beep::Probability*, std::vector<beep::Probability, std::allocator<beep::Probability> > >' changed in GCC 7.1
 1628 |  { _M_assign_aux(__first, __last, std::__iterator_category(__first)); }
      |    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In member function 'const beep::Node* beep::DiscBirthDeathProbs::getConstLinValsForPath(std::vector<beep::Probability, std::allocator<beep::Probability> >&, beep::DiscTree::Point, beep::DiscTree::Point, bool) const':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<beep::Probability*, std::vector<beep::Probability, std::allocator<beep::Probability> > >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<beep::Probability*, std::vector<beep::Probability, std::allocator<beep::Probability> > >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathProbs.hh:9,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DiscBirthDeathProbs.cc:5:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<beep::Probability*, std::vector<beep::Probability, std::allocator<beep::Probability> > >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void beep::DiscBirthDeathProbs::calcBDProbs(const beep::Node*)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<beep::Probability*, std::vector<beep::Probability, std::allocator<beep::Probability> > >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<beep::Probability*, std::vector<beep::Probability, std::allocator<beep::Probability> > >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 51%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochBDTMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/EpochBDTMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTMCMC.cc
[ 51%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochBDTProbs.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/EpochBDTProbs.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc:8:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.hh: In constructor 'beep::EdgeDiscGSR::EdgeDiscGSR(beep::Tree*, beep::EdgeDiscTree*, beep::StrStrMap*, beep::Density2P*, beep::EdgeDiscBDProbs*, beep::UnsignedVector*)':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.hh:588:14: warning: 'beep::EdgeDiscGSR::m_calculatedAtAndBelow' will be initialized after [-Wreorder]
  588 |         bool m_calculatedAtAndBelow;
      |              ^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.hh:583:14: warning:   'bool beep::EdgeDiscGSR::m_calculatedAtBars' [-Wreorder]
  583 |         bool m_calculatedAtBars;
      |              ^~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc:23:5: warning:   when initialized here [-Wreorder]
   23 |     EdgeDiscGSR::EdgeDiscGSR(Tree* G,
      |     ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc: In member function 'void beep::EdgeDiscGSR::convertDensitiesToProbabilities()':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc:475:27: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  475 |         for (int i = 0; i < m_G->getNumberOfNodes(); i++) {
      |                         ~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc:485:27: warning: variable 'xpt' set but not used [-Wunused-but-set-variable]
  485 |                     Point xpt = x.getPt();
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc:525:27: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  525 |         for (int i = 0; i < m_G->getNumberOfNodes(); i++) {
      |                         ~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc:528:19: warning: unused variable 'parent' [-Wunused-variable]
  528 |             Node *parent = u->getParent();
      |                   ^~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTMCMC.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTMCMC.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:359:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::C2' of non-integral type [-fpermissive]
  359 |  static const Real C2 =       1.0 /      5.0;
      |                    ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:360:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::C3' of non-integral type [-fpermissive]
  360 |  static const Real C3 =       3.0 /     10.0;
      |                    ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:361:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::C4' of non-integral type [-fpermissive]
  361 |  static const Real C4 =       4.0 /      5.0;
      |                    ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:362:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::C5' of non-integral type [-fpermissive]
  362 |  static const Real C5 =       8.0 /      9.0;
      |                    ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:363:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A21' of non-integral type [-fpermissive]
  363 |  static const Real A21 =      1.0 /      5.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:364:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A31' of non-integral type [-fpermissive]
  364 |  static const Real A31 =      3.0 /     40.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:365:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A32' of non-integral type [-fpermissive]
  365 |  static const Real A32 =      9.0 /     40.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:366:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A41' of non-integral type [-fpermissive]
  366 |  static const Real A41 =     44.0 /     45.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:367:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A42' of non-integral type [-fpermissive]
  367 |  static const Real A42 =    -56.0 /     15.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:368:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A43' of non-integral type [-fpermissive]
  368 |  static const Real A43 =     32.0 /      9.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:369:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A51' of non-integral type [-fpermissive]
  369 |  static const Real A51 =  19372.0 /   6561.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:370:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A52' of non-integral type [-fpermissive]
  370 |     static const Real A52 = -25360.0 /   2187.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:371:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A53' of non-integral type [-fpermissive]
  371 |     static const Real A53 =  64448.0 /   6561.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:372:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A54' of non-integral type [-fpermissive]
  372 |     static const Real A54 =   -212.0 /    729.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:373:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A61' of non-integral type [-fpermissive]
  373 |     static const Real A61 =   9017.0 /   3168.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:374:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A62' of non-integral type [-fpermissive]
  374 |     static const Real A62 =   -355.0 /     33.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:375:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A63' of non-integral type [-fpermissive]
  375 |     static const Real A63 =  46732.0 /   5247.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:376:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A64' of non-integral type [-fpermissive]
  376 |     static const Real A64 =     49.0 /    176.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:377:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A65' of non-integral type [-fpermissive]
  377 |     static const Real A65 =  -5103.0 /  18656.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:378:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A71' of non-integral type [-fpermissive]
  378 |     static const Real A71 =     35.0 /    384.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:379:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A73' of non-integral type [-fpermissive]
  379 |     static const Real A73 =    500.0 /   1113.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:380:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A74' of non-integral type [-fpermissive]
  380 |     static const Real A74 =    125.0 /    192.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:381:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A75' of non-integral type [-fpermissive]
  381 |     static const Real A75 =  -2187.0 /   6784.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:382:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A76' of non-integral type [-fpermissive]
  382 |     static const Real A76 =     11.0 /     84.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:383:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E1' of non-integral type [-fpermissive]
  383 |     static const Real E1 =      71.0 /  57600.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:384:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E3' of non-integral type [-fpermissive]
  384 |     static const Real E3 =     -71.0 /  16695.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:385:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E4' of non-integral type [-fpermissive]
  385 |     static const Real E4 =      71.0 /   1920.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:386:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E5' of non-integral type [-fpermissive]
  386 |     static const Real E5 =  -17253.0 / 339200.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:387:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E6' of non-integral type [-fpermissive]
  387 |     static const Real E6 =      22.0 /    525.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:388:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E7' of non-integral type [-fpermissive]
  388 |     static const Real E7 =      -1.0 /     40.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:391:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D1' of non-integral type [-fpermissive]
  391 |     static const Real D1 =  -12715105075.0 /  11282082432.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:392:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D3' of non-integral type [-fpermissive]
  392 |     static const Real D3 =   87487479700.0 /  32700410799.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:393:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D4' of non-integral type [-fpermissive]
  393 |     static const Real D4 =  -10690763975.0 /   1880347072.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:394:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D5' of non-integral type [-fpermissive]
  394 |     static const Real D5 =  701980252875.0 / 199316789632.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:395:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D6' of non-integral type [-fpermissive]
  395 |     static const Real D6 =   -1453857185.0 /    822651844.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:396:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D7' of non-integral type [-fpermissive]
  396 |     static const Real D7 =      69997945.0 /     29380423.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc: In member function 'beep::Probability beep::EdgeDiscGSR::getTotalPlacementDensity(const beep::Node*)':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc:897:18: warning: unused variable 'timeStep' [-Wunused-variable]
  897 |             Real timeStep = u->isLeaf() ? 1.0 : m_DS->getTimestep(xPoint.first);
      |                  ^~~~~~~~
[ 52%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochDLTRS.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/EpochDLTRS.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochDLTRS.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:9,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTMCMC.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTMCMC.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochTree.hh:54:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::EpochTree::MIN_SPLICE_DELTA' of non-integral type [-fpermissive]
   54 |  static const Real MIN_SPLICE_DELTA = 0.0001;
      |                    ^~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTMCMC.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTMCMC.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:50:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::EpochBDTProbs::REL_TOL' of non-integral type [-fpermissive]
   50 |  static const Real REL_TOL = 1e-6;
      |                    ^~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:55:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::EpochBDTProbs::ABS_TOL' of non-integral type [-fpermissive]
   55 |  static const Real ABS_TOL = 1e-6;
      |                    ^~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.cc:7:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:359:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::C2' of non-integral type [-fpermissive]
  359 |  static const Real C2 =       1.0 /      5.0;
      |                    ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:360:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::C3' of non-integral type [-fpermissive]
  360 |  static const Real C3 =       3.0 /     10.0;
      |                    ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:361:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::C4' of non-integral type [-fpermissive]
  361 |  static const Real C4 =       4.0 /      5.0;
      |                    ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:362:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::C5' of non-integral type [-fpermissive]
  362 |  static const Real C5 =       8.0 /      9.0;
      |                    ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:363:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A21' of non-integral type [-fpermissive]
  363 |  static const Real A21 =      1.0 /      5.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:364:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A31' of non-integral type [-fpermissive]
  364 |  static const Real A31 =      3.0 /     40.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:365:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A32' of non-integral type [-fpermissive]
  365 |  static const Real A32 =      9.0 /     40.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:366:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A41' of non-integral type [-fpermissive]
  366 |  static const Real A41 =     44.0 /     45.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:367:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A42' of non-integral type [-fpermissive]
  367 |  static const Real A42 =    -56.0 /     15.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:368:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A43' of non-integral type [-fpermissive]
  368 |  static const Real A43 =     32.0 /      9.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:369:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A51' of non-integral type [-fpermissive]
  369 |  static const Real A51 =  19372.0 /   6561.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:370:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A52' of non-integral type [-fpermissive]
  370 |     static const Real A52 = -25360.0 /   2187.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:371:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A53' of non-integral type [-fpermissive]
  371 |     static const Real A53 =  64448.0 /   6561.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:372:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A54' of non-integral type [-fpermissive]
  372 |     static const Real A54 =   -212.0 /    729.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:373:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A61' of non-integral type [-fpermissive]
  373 |     static const Real A61 =   9017.0 /   3168.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:374:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A62' of non-integral type [-fpermissive]
  374 |     static const Real A62 =   -355.0 /     33.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:375:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A63' of non-integral type [-fpermissive]
  375 |     static const Real A63 =  46732.0 /   5247.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:376:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A64' of non-integral type [-fpermissive]
  376 |     static const Real A64 =     49.0 /    176.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:377:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A65' of non-integral type [-fpermissive]
  377 |     static const Real A65 =  -5103.0 /  18656.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:378:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A71' of non-integral type [-fpermissive]
  378 |     static const Real A71 =     35.0 /    384.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:379:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A73' of non-integral type [-fpermissive]
  379 |     static const Real A73 =    500.0 /   1113.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:380:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A74' of non-integral type [-fpermissive]
  380 |     static const Real A74 =    125.0 /    192.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:381:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A75' of non-integral type [-fpermissive]
  381 |     static const Real A75 =  -2187.0 /   6784.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:382:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A76' of non-integral type [-fpermissive]
  382 |     static const Real A76 =     11.0 /     84.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:383:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E1' of non-integral type [-fpermissive]
  383 |     static const Real E1 =      71.0 /  57600.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:384:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E3' of non-integral type [-fpermissive]
  384 |     static const Real E3 =     -71.0 /  16695.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:385:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E4' of non-integral type [-fpermissive]
  385 |     static const Real E4 =      71.0 /   1920.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:386:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E5' of non-integral type [-fpermissive]
  386 |     static const Real E5 =  -17253.0 / 339200.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:387:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E6' of non-integral type [-fpermissive]
  387 |     static const Real E6 =      22.0 /    525.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:388:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E7' of non-integral type [-fpermissive]
  388 |     static const Real E7 =      -1.0 /     40.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:391:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D1' of non-integral type [-fpermissive]
  391 |     static const Real D1 =  -12715105075.0 /  11282082432.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:392:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D3' of non-integral type [-fpermissive]
  392 |     static const Real D3 =   87487479700.0 /  32700410799.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:393:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D4' of non-integral type [-fpermissive]
  393 |     static const Real D4 =  -10690763975.0 /   1880347072.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:394:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D5' of non-integral type [-fpermissive]
  394 |     static const Real D5 =  701980252875.0 / 199316789632.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:395:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D6' of non-integral type [-fpermissive]
  395 |     static const Real D6 =   -1453857185.0 /    822651844.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:396:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D7' of non-integral type [-fpermissive]
  396 |     static const Real D7 =      69997945.0 /     29380423.0;
      |                       ^~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:9,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.cc:7:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochTree.hh:54:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::EpochTree::MIN_SPLICE_DELTA' of non-integral type [-fpermissive]
   54 |  static const Real MIN_SPLICE_DELTA = 0.0001;
      |                    ^~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.cc:7:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:50:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::EpochBDTProbs::REL_TOL' of non-integral type [-fpermissive]
   50 |  static const Real REL_TOL = 1e-6;
      |                    ^~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:55:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::EpochBDTProbs::ABS_TOL' of non-integral type [-fpermissive]
   55 |  static const Real ABS_TOL = 1e-6;
      |                    ^~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochDLTRS.cc:3:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:359:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::C2' of non-integral type [-fpermissive]
  359 |  static const Real C2 =       1.0 /      5.0;
      |                    ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:360:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::C3' of non-integral type [-fpermissive]
  360 |  static const Real C3 =       3.0 /     10.0;
      |                    ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:361:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::C4' of non-integral type [-fpermissive]
  361 |  static const Real C4 =       4.0 /      5.0;
      |                    ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:362:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::C5' of non-integral type [-fpermissive]
  362 |  static const Real C5 =       8.0 /      9.0;
      |                    ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:363:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A21' of non-integral type [-fpermissive]
  363 |  static const Real A21 =      1.0 /      5.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:364:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A31' of non-integral type [-fpermissive]
  364 |  static const Real A31 =      3.0 /     40.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:365:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A32' of non-integral type [-fpermissive]
  365 |  static const Real A32 =      9.0 /     40.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:366:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A41' of non-integral type [-fpermissive]
  366 |  static const Real A41 =     44.0 /     45.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:367:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A42' of non-integral type [-fpermissive]
  367 |  static const Real A42 =    -56.0 /     15.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:368:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A43' of non-integral type [-fpermissive]
  368 |  static const Real A43 =     32.0 /      9.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:369:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A51' of non-integral type [-fpermissive]
  369 |  static const Real A51 =  19372.0 /   6561.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:370:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A52' of non-integral type [-fpermissive]
  370 |     static const Real A52 = -25360.0 /   2187.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:371:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A53' of non-integral type [-fpermissive]
  371 |     static const Real A53 =  64448.0 /   6561.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:372:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A54' of non-integral type [-fpermissive]
  372 |     static const Real A54 =   -212.0 /    729.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:373:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A61' of non-integral type [-fpermissive]
  373 |     static const Real A61 =   9017.0 /   3168.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:374:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A62' of non-integral type [-fpermissive]
  374 |     static const Real A62 =   -355.0 /     33.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:375:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A63' of non-integral type [-fpermissive]
  375 |     static const Real A63 =  46732.0 /   5247.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:376:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A64' of non-integral type [-fpermissive]
  376 |     static const Real A64 =     49.0 /    176.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:377:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A65' of non-integral type [-fpermissive]
  377 |     static const Real A65 =  -5103.0 /  18656.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:378:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A71' of non-integral type [-fpermissive]
  378 |     static const Real A71 =     35.0 /    384.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:379:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A73' of non-integral type [-fpermissive]
  379 |     static const Real A73 =    500.0 /   1113.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:380:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A74' of non-integral type [-fpermissive]
  380 |     static const Real A74 =    125.0 /    192.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:381:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A75' of non-integral type [-fpermissive]
  381 |     static const Real A75 =  -2187.0 /   6784.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:382:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A76' of non-integral type [-fpermissive]
  382 |     static const Real A76 =     11.0 /     84.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:383:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E1' of non-integral type [-fpermissive]
  383 |     static const Real E1 =      71.0 /  57600.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:384:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E3' of non-integral type [-fpermissive]
  384 |     static const Real E3 =     -71.0 /  16695.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:385:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E4' of non-integral type [-fpermissive]
  385 |     static const Real E4 =      71.0 /   1920.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:386:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E5' of non-integral type [-fpermissive]
  386 |     static const Real E5 =  -17253.0 / 339200.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:387:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E6' of non-integral type [-fpermissive]
  387 |     static const Real E6 =      22.0 /    525.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:388:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E7' of non-integral type [-fpermissive]
  388 |     static const Real E7 =      -1.0 /     40.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:391:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D1' of non-integral type [-fpermissive]
  391 |     static const Real D1 =  -12715105075.0 /  11282082432.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:392:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D3' of non-integral type [-fpermissive]
  392 |     static const Real D3 =   87487479700.0 /  32700410799.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:393:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D4' of non-integral type [-fpermissive]
  393 |     static const Real D4 =  -10690763975.0 /   1880347072.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:394:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D5' of non-integral type [-fpermissive]
  394 |     static const Real D5 =  701980252875.0 / 199316789632.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:395:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D6' of non-integral type [-fpermissive]
  395 |     static const Real D6 =   -1453857185.0 /    822651844.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:396:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D7' of non-integral type [-fpermissive]
  396 |     static const Real D7 =      69997945.0 /     29380423.0;
      |                       ^~
[ 52%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/GammaMap.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/GammaMap.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaMap.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:9,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochDLTRS.cc:3:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochTree.hh:54:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::EpochTree::MIN_SPLICE_DELTA' of non-integral type [-fpermissive]
   54 |  static const Real MIN_SPLICE_DELTA = 0.0001;
      |                    ^~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochDLTRS.cc:3:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:50:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::EpochBDTProbs::REL_TOL' of non-integral type [-fpermissive]
   50 |  static const Real REL_TOL = 1e-6;
      |                    ^~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:55:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::EpochBDTProbs::ABS_TOL' of non-integral type [-fpermissive]
   55 |  static const Real ABS_TOL = 1e-6;
      |                    ^~~~~~~
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathProbs.hh:9,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.cc:6:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' changed in GCC 7.1
  509 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathProbs.hh:9,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.cc:6:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void beep::EpochBDTProbs::appendInitVals(beep::EpochBDTProbs::realvec&) const':
/usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
 1338 |  _M_fill_insert(begin() + __offset, __n, __x);
      |  ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 53%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/GuestTreeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/GuestTreeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GuestTreeModel.cc
[ 54%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EnumerateReconciliationModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/EnumerateReconciliationModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EnumerateReconciliationModel.cc
[ 54%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/fastGEM_BirthDeathMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/fastGEM_BirthDeathMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM_BirthDeathMCMC.cc
[ 55%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/fastGEM_BirthDeathProbs.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/fastGEM_BirthDeathProbs.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM_BirthDeathProbs.cc
[ 55%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/fastGEM.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/fastGEM.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc
[ 56%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LambdaMap.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/LambdaMap.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LambdaMap.cc
[ 56%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MaxReconciledTreeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/MaxReconciledTreeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MaxReconciledTreeModel.cc
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM_BirthDeathProbs.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM_BirthDeathProbs.cc:5:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In constructor 'beep::fastGEM_BirthDeathProbs::fastGEM_BirthDeathProbs(beep::Tree&, unsigned int, std::vector<double, std::allocator<double> >*, const Real&, const Real&)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc: In member function 'unsigned int beep::fastGEM::calcMaxProb(unsigned int)':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc:136:14: warning: variable 'topRateProb' set but not used [-Wunused-but-set-variable]
  136 |  Probability topRateProb = df->operator()(rate);
      |              ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc: In member function 'void beep::fastGEM::printSa()':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc:1298:10: warning: variable 'zeroTotalQuotient' set but not used [-Wunused-but-set-variable]
 1298 |     Real zeroTotalQuotient = 0.0;
      |          ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc: In member function 'void beep::fastGEM::printLb()':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc:1325:10: warning: variable 'zeroTotalQuotient' set but not used [-Wunused-but-set-variable]
 1325 |     Real zeroTotalQuotient = 0.0;
      |          ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc: In member function 'void beep::fastGEM::printLt()':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc:1356:10: warning: variable 'zeroTotalQuotient' set but not used [-Wunused-but-set-variable]
 1356 |     Real zeroTotalQuotient = 0.0;
      |          ^~~~~~~~~~~~~~~~~
[ 57%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/PerturbationObservable.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/PerturbationObservable.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/PerturbationObservable.cc
[ 58%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciledTreeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/ReconciledTreeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciledTreeModel.cc
[ 58%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciledTreeTimeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/ReconciledTreeTimeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciledTreeTimeModel.cc
[ 59%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciledTreeTimeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/ReconciledTreeTimeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciledTreeTimeMCMC.cc
[ 59%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/ReconciliationModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationModel.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciledTreeTimeMCMC.cc:3:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/LogNormDensity.hh:81:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::LogNormDensity::pi' of non-integral type [-fpermissive]
   81 |     static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$.
      |                       ^~
[ 60%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationSampler.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/ReconciliationSampler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationSampler.cc
[ 60%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationTimeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/ReconciliationTimeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTimeModel.cc
[ 61%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationTimeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/ReconciliationTimeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTimeMCMC.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationSampler.cc: In member function 'void beep::ReconciliationSampler::setAttributesAndProbabilities()':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationSampler.cc:161:17: warning: variable 'p' set but not used [-Wunused-but-set-variable]
  161 |     Probability p = calculateDataProbability();
      |                 ^
[ 62%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationTimeSampler.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/ReconciliationTimeSampler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTimeSampler.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTimeModel.cc: In member function 'std::string beep::ReconciliationTimeModel::table4os() const':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTimeModel.cc:319:58: warning: typedef 'MapIter' locally defined but not used [-Wunused-local-typedefs]
  319 |     typedef std::map<unsigned, unsigned>::const_iterator MapIter;
      |                                                          ^~~~~~~
[ 62%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationTreeGenerator.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/ReconciliationTreeGenerator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTreeGenerator.cc
[ 63%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DLRSOrthoCalculator.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/DLRSOrthoCalculator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DLRSOrthoCalculator.cc
[ 63%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SetOfNodes.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/SetOfNodes.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SetOfNodes.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTimeSampler.cc: In member function 'const string beep::ReconciliationTimeSampler::table4os() const':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTimeSampler.cc:422:58: warning: typedef 'MapIter' locally defined but not used [-Wunused-local-typedefs]
  422 |     typedef std::map<unsigned, unsigned>::const_iterator MapIter;
      |                                                          ^~~~~~~
[ 64%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TopTimeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/TopTimeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TopTimeMCMC.cc
[ 65%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridBranchSwapping.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/HybridBranchSwapping.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridBranchSwapping.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTreeGenerator.cc: In constructor 'beep::ReconciliationTreeGenerator::ReconciliationTreeGenerator(beep::BirthDeathProbs&, const string&)':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTreeGenerator.cc:31:3: warning: 'beep::ReconciliationTreeGenerator::R' is initialized with itself [-Winit-self]
   31 |   ReconciliationTreeGenerator::
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 65%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridTree.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/HybridTree.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.cc
[ 66%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridTreeIO.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/HybridTreeIO.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeIO.cc
[ 66%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridTreeInputOutput.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/HybridTreeInputOutput.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeInputOutput.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.cc: In member function 'beep::Tree& beep::HybridTree::getBinaryTree() const':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.cc:367:40: warning: ISO C++ forbids comparison between pointer and integer [-fpermissive]
  367 |     if(rootNode && bTree.getRootNode() == false)
      |                    ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeInputOutput.hh:13,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeInputOutput.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeInputOutput.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const beep::HybridTree&}; _Tp = beep::HybridTree; _Alloc = std::allocator<beep::HybridTree>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<beep::HybridTree>::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeIO.hh:10,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeIO.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeIO.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const beep::HybridTree&}; _Tp = beep::HybridTree; _Alloc = std::allocator<beep::HybridTree>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<beep::HybridTree>::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeInputOutput.hh:13,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeInputOutput.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeInputOutput.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector<beep::HybridTree> beep::HybridTreeInputOutput::readAllHybridTrees(beep::TreeIOTraits&, std::vector<beep::SetOfNodes>*, std::vector<beep::StrStrMap>*)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<beep::HybridTree*, std::vector<beep::HybridTree> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 67%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BDHybridTreeGenerator.cc.o
In file included from /usr/include/c++/10/vector:67,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeIO.hh:10,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeIO.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeIO.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector<beep::HybridTree> beep::HybridTreeIO::readAllHybridTrees(beep::TreeIOTraits, std::vector<beep::SetOfNodes>*, std::vector<beep::StrStrMap>*)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<beep::HybridTree*, std::vector<beep::HybridTree> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/BDHybridTreeGenerator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BDHybridTreeGenerator.cc
[ 67%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BirthDeathInHybridProbs.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/BirthDeathInHybridProbs.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathInHybridProbs.cc
[ 68%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BirthDeathInHybridMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/BirthDeathInHybridMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathInHybridMCMC.cc
[ 69%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridBDTreeGenerator.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/HybridBDTreeGenerator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridBDTreeGenerator.cc
[ 69%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridGuestTreeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/HybridGuestTreeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridGuestTreeMCMC.cc
[ 70%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridGuestTreeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/HybridGuestTreeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridGuestTreeModel.cc
[ 70%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridHostTreeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/HybridHostTreeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridHostTreeMCMC.cc
[ 71%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridHostTreeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/HybridHostTreeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridHostTreeModel.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridHostTreeModel.cc:6:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/NormalDensity.hh:84:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::NormalDensity::pi' of non-integral type [-fpermissive]
   84 |     static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$.
      |                       ^~
[ 71%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EnumHybridGuestTreeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/EnumHybridGuestTreeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EnumHybridGuestTreeMCMC.cc
[ 72%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EnumHybridGuestTreeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/EnumHybridGuestTreeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EnumHybridGuestTreeModel.cc
In file included from /usr/include/c++/10/vector:72,
                 from /usr/include/boost/archive/detail/helper_collection.hpp:20,
                 from /usr/include/boost/archive/detail/basic_oarchive.hpp:26,
                 from /usr/include/boost/archive/detail/oserializer.hpp:66,
                 from /usr/include/boost/mpi/detail/mpi_datatype_oarchive.hpp:14,
                 from /usr/include/boost/mpi/detail/mpi_datatype_cache.hpp:13,
                 from /usr/include/boost/mpi/datatype.hpp:27,
                 from /usr/include/boost/mpi/communicator.hpp:22,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Probability.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ProbabilityModel.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridHostTreeModel.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridHostTreeModel.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
  509 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
                 from /usr/include/boost/archive/detail/helper_collection.hpp:20,
                 from /usr/include/boost/archive/detail/basic_oarchive.hpp:26,
                 from /usr/include/boost/archive/detail/oserializer.hpp:66,
                 from /usr/include/boost/mpi/detail/mpi_datatype_oarchive.hpp:14,
                 from /usr/include/boost/mpi/detail/mpi_datatype_cache.hpp:13,
                 from /usr/include/boost/mpi/datatype.hpp:27,
                 from /usr/include/boost/mpi/communicator.hpp:22,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Probability.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ProbabilityModel.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridHostTreeModel.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridHostTreeModel.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void beep::HybridHostTreeModel::setMaxGhosts(unsigned int)':
/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
  960 |    _M_fill_insert(end(), __new_size - size(), __x);
      |    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
  960 |    _M_fill_insert(end(), __new_size - size(), __x);
      |    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
  960 |    _M_fill_insert(end(), __new_size - size(), __x);
      |    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
  960 |    _M_fill_insert(end(), __new_size - size(), __x);
      |    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 73%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/CacheSubstitutionModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/CacheSubstitutionModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/CacheSubstitutionModel.cc
[ 73%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/FastCacheSubstitutionModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/FastCacheSubstitutionModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/FastCacheSubstitutionModel.cc
[ 74%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MatrixCache.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/MatrixCache.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MatrixCache.cc
[ 74%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TransitionHandler.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/TransitionHandler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TransitionHandler.cc
In file included from /usr/include/c++/10/ext/hash_map:60,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/FastCacheSubstitutionModel.hh:8,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/FastCacheSubstitutionModel.cc:1:
/usr/include/c++/10/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
   32 | #warning \
      |  ^~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/CacheSubstitutionModel.cc:9:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SiteRateHandler.hh:83:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::SiteRateHandler::MAX' of non-integral type [-fpermissive]
   83 |     static const Real MAX = 1e10; //!< rates do not change for alpha > MAX.
      |                       ^~~
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LambdaMap.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaMap.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationModel.hh:8,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GuestTreeModel.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EnumHybridGuestTreeModel.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EnumHybridGuestTreeModel.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {beep::ReconciledTreeTimeModel}; _Tp = beep::ReconciledTreeTimeModel; _Alloc = std::allocator<beep::ReconciledTreeTimeModel>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<beep::ReconciledTreeTimeModel>::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {beep::GuestTreeModel}; _Tp = beep::GuestTreeModel; _Alloc = std::allocator<beep::GuestTreeModel>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<beep::GuestTreeModel>::iterator' changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function 'void beep::EnumHybridGuestTreeModel::inits()':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<beep::ReconciledTreeTimeModel*, std::vector<beep::ReconciledTreeTimeModel> >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<beep::GuestTreeModel*, std::vector<beep::GuestTreeModel> >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/FastCacheSubstitutionModel.cc:9:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SiteRateHandler.hh:83:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::SiteRateHandler::MAX' of non-integral type [-fpermissive]
   83 |     static const Real MAX = 1e10; //!< rates do not change for alpha > MAX.
      |                       ^~~
[ 75%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MatrixTransitionHandler.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/MatrixTransitionHandler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MatrixTransitionHandler.cc
[ 75%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SeqIO.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/SeqIO.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SeqIO.cc
[ 76%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SequenceGenerator.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/SequenceGenerator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceGenerator.cc
[ 77%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SequenceType.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/SequenceType.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceType.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceGenerator.hh:15,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceGenerator.cc:4:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SiteRateHandler.hh:83:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::SiteRateHandler::MAX' of non-integral type [-fpermissive]
   83 |     static const Real MAX = 1e10; //!< rates do not change for alpha > MAX.
      |                       ^~~
[ 77%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SequenceData.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/SequenceData.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceData.cc
[ 78%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SubstitutionModel.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/SubstitutionModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SubstitutionModel.cc
[ 78%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SubstitutionMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/SubstitutionMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SubstitutionMCMC.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceType.cc:270:10: warning: 'std::ostream& beep::operator<<(std::ostream&, const beep::SequenceType&)' has not been declared within 'beep'
  270 | ostream& beep::operator<<(ostream& os, const SequenceType& dt)
      |          ^~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceType.cc:8:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceType.hh:56:26: note: only here as a 'friend'
   56 |     friend std::ostream& operator<<(std::ostream& os, const SequenceType& dt);
      |                          ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SubstitutionModel.cc:9:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SiteRateHandler.hh:83:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::SiteRateHandler::MAX' of non-integral type [-fpermissive]
   83 |     static const Real MAX = 1e10; //!< rates do not change for alpha > MAX.
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceData.cc: In member function 'std::map<char, double> beep::SequenceData::getBaseFrequencies()':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceData.cc:288:31: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  288 |             for (int i = 0; i < seqType.alphabetSize(); i++)
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceData.cc:303:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  303 |                 for (int j = 0; j < seq.length(); j++) {
      |                                 ~~^~~~~~~~~~~~~~
[ 79%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LA_Vector.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/LA_Vector.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LA_Vector.cc
[ 80%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LA_Matrix.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/LA_Matrix.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LA_Matrix.cc
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceData.cc:6:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/LA_Matrix.cc: In constructor 'beep::LA_Matrix::LA_Matrix()':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/LA_Matrix.cc:19:5: warning: 'beep::LA_Matrix::dim' is initialized with itself [-Winit-self]
   19 |     LA_Matrix::LA_Matrix()
      |     ^~~~~~~~~
[ 80%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LA_DiagonalMatrix.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -pthread -o CMakeFiles/prime-phylo.dir/LA_DiagonalMatrix.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LA_DiagonalMatrix.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/LA_Matrix.cc: In constructor 'beep::LA_Matrix::LA_Matrix()':
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/LA_Matrix.cc:20:13: warning: '*<unknown>.beep::LA_Matrix::dim' is used uninitialized in this function [-Wuninitialized]
   20 |       : dim(dim),
      |             ^~~
In file included from /usr/include/c++/10/map:60,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceData.cc:2:
/usr/include/c++/10/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = char; _Val = std::pair<const char, double>; _KeyOfValue = std::_Select1st<std::pair<const char, double> >; _Compare = std::less<char>; _Alloc = std::allocator<std::pair<const char, double> >]':
/usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator' changed in GCC 7.1
 2193 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const char&>, std::tuple<>}; _Key = char; _Val = std::pair<const char, double>; _KeyOfValue = std::_Select1st<std::pair<const char, double> >; _Compare = std::less<char>; _Alloc = std::allocator<std::pair<const char, double> >]':
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator' changed in GCC 7.1
 2458 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<char&&>, std::tuple<>}; _Key = char; _Val = std::pair<const char, double>; _KeyOfValue = std::_Select1st<std::pair<const char, double> >; _Compare = std::less<char>; _Alloc = std::allocator<std::pair<const char, double> >]':
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator' changed in GCC 7.1
In file included from /usr/include/c++/10/vector:72,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceData.cc:6:
/usr/include/c++/10/bits/vector.tcc: In member function 'std::map<char, double> beep::SequenceData::getBaseFrequencies()':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceData.cc:2:
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator' changed in GCC 7.1
  520 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  521 |      std::forward_as_tuple(std::move(__k)),
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  522 |      std::tuple<>());
      |      ~~~~~~~~~~~~~~~                 
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator' changed in GCC 7.1
  520 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  521 |      std::forward_as_tuple(std::move(__k)),
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  522 |      std::tuple<>());
      |      ~~~~~~~~~~~~~~~                 
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator' changed in GCC 7.1
  520 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  521 |      std::forward_as_tuple(std::move(__k)),
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  522 |      std::tuple<>());
      |      ~~~~~~~~~~~~~~~                 
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator' changed in GCC 7.1
  520 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  521 |      std::forward_as_tuple(std::move(__k)),
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  522 |      std::tuple<>());
      |      ~~~~~~~~~~~~~~~                 
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator' changed in GCC 7.1
  520 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  521 |      std::forward_as_tuple(std::move(__k)),
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  522 |      std::tuple<>());
      |      ~~~~~~~~~~~~~~~                 
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator' changed in GCC 7.1
  520 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  521 |      std::forward_as_tuple(std::move(__k)),
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  522 |      std::tuple<>());
      |      ~~~~~~~~~~~~~~~                 
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator' changed in GCC 7.1
  520 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  521 |      std::forward_as_tuple(std::move(__k)),
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  522 |      std::tuple<>());
      |      ~~~~~~~~~~~~~~~                 
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator' changed in GCC 7.1
  520 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  521 |      std::forward_as_tuple(std::move(__k)),
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  522 |      std::tuple<>());
      |      ~~~~~~~~~~~~~~~                 
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator' changed in GCC 7.1
  520 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  521 |      std::forward_as_tuple(std::move(__k)),
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  522 |      std::tuple<>());
      |      ~~~~~~~~~~~~~~~                 
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator' changed in GCC 7.1
  520 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  521 |      std::forward_as_tuple(std::move(__k)),
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  522 |      std::tuple<>());
      |      ~~~~~~~~~~~~~~~                 
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator' changed in GCC 7.1
  520 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  521 |      std::forward_as_tuple(std::move(__k)),
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  522 |      std::tuple<>());
      |      ~~~~~~~~~~~~~~~                 
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator' changed in GCC 7.1
  520 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  521 |      std::forward_as_tuple(std::move(__k)),
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  522 |      std::tuple<>());
      |      ~~~~~~~~~~~~~~~                 
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator' changed in GCC 7.1
  501 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  502 |          std::tuple<const key_type&>(__k),
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  503 |          std::tuple<>());
      |          ~~~~~~~~~~~~~~~             
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator' changed in GCC 7.1
  501 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  502 |          std::tuple<const key_type&>(__k),
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  503 |          std::tuple<>());
      |          ~~~~~~~~~~~~~~~             
[ 81%] Linking CXX shared library libprime-phylo.so
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime && /usr/bin/cmake -E cmake_link_script CMakeFiles/prime-phylo.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -pthread -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libprime-phylo.so -o libprime-phylo.so CMakeFiles/prime-phylo.dir/NHXnode.c.o CMakeFiles/prime-phylo.dir/NHXtree.c.o CMakeFiles/prime-phylo.dir/NHXannotation.c.o CMakeFiles/prime-phylo.dir/lexer.c.o CMakeFiles/prime-phylo.dir/NHXparse.c.o CMakeFiles/prime-phylo.dir/AnError.cc.o CMakeFiles/prime-phylo.dir/Beep.cc.o CMakeFiles/prime-phylo.dir/BeepOption.cc.o CMakeFiles/prime-phylo.dir/Hacks.cc.o CMakeFiles/prime-phylo.dir/ODESolver.cc.o CMakeFiles/prime-phylo.dir/PRNG.cc.o CMakeFiles/prime-phylo.dir/PrimeOptionMap.cc.o CMakeFiles/prime-phylo.dir/ProbabilityModel.cc.o CMakeFiles/prime-phylo.dir/DiscreteGamma.cc.o CMakeFiles/prime-phylo.dir/Probability.cc.o CMakeFiles/prime-phylo.dir/Tokenizer.cc.o CMakeFiles/prime-phylo.dir/TimeEstimator.cc.o CMakeFiles/prime-phylo.dir/BranchSwapping.cc.o CMakeFiles/prime-phylo.dir/DiscTree.cc.o CMakeFiles/prime-phylo.dir/EdgeDiscPtMaps.cc.o CMakeFiles/prime-phylo.dir/EdgeDiscTree.cc.o CMakeFiles/prime-phylo.dir/EpochPtMaps.cc.o CMakeFiles/prime-phylo.dir/EpochPtSet.cc.o CMakeFiles/prime-phylo.dir/EpochTree.cc.o CMakeFiles/prime-phylo.dir/InvMRCA.cc.o CMakeFiles/prime-phylo.dir/Node.cc.o CMakeFiles/prime-phylo.dir/NodeMap.cc.o CMakeFiles/prime-phylo.dir/NodeNodeMap.cc.o CMakeFiles/prime-phylo.dir/RandomTreeGenerator.cc.o CMakeFiles/prime-phylo.dir/StrStrMap.cc.o CMakeFiles/prime-phylo.dir/Tree.cc.o CMakeFiles/prime-phylo.dir/TreeAnalysis.cc.o CMakeFiles/prime-phylo.dir/TreeDiscretizer.cc.o CMakeFiles/prime-phylo.dir/TreeDiscretizers.cc.o CMakeFiles/prime-phylo.dir/TreeMCMC.cc.o CMakeFiles/prime-phylo.dir/TreeIO.cc.o CMakeFiles/prime-phylo.dir/TreeInputOutput.cc.o CMakeFiles/prime-phylo.dir/TreeIOTraits.cc.o CMakeFiles/prime-phylo.dir/TreePerturbationEvent.cc.o CMakeFiles/prime-phylo.dir/ConstRateModel.cc.o CMakeFiles/prime-phylo.dir/Density2P_common.cc.o CMakeFiles/prime-phylo.dir/Density2P_positive.cc.o CMakeFiles/prime-phylo.dir/Density2PMCMC.cc.o CMakeFiles/prime-phylo.dir/EdgeRateMCMC.cc.o CMakeFiles/prime-phylo.dir/EdgeRateMCMC_common.cc.o CMakeFiles/prime-phylo.dir/EdgeRateModel_common.cc.o CMakeFiles/prime-phylo.dir/EdgeWeightHandler.cc.o CMakeFiles/prime-phylo.dir/EdgeWeightMCMC.cc.o CMakeFiles/prime-phylo.dir/GammaDensity.cc.o CMakeFiles/prime-phylo.dir/InvGaussDensity.cc.o CMakeFiles/prime-phylo.dir/LengthRateModel.cc.o CMakeFiles/prime-phylo.dir/LogNormDensity.cc.o CMakeFiles/prime-phylo.dir/NormalDensity.cc.o CMakeFiles/prime-phylo.dir/UniformDensity.cc.o CMakeFiles/prime-phylo.dir/VarRateModel.cc.o CMakeFiles/prime-phylo.dir/SiteRateHandler.cc.o CMakeFiles/prime-phylo.dir/DummyMCMC.cc.o CMakeFiles/prime-phylo.dir/MCMCModel.cc.o CMakeFiles/prime-phylo.dir/StdMCMCModel.cc.o CMakeFiles/prime-phylo.dir/MCMCObject.cc.o CMakeFiles/prime-phylo.dir/SimpleMCMC.cc.o CMakeFiles/prime-phylo.dir/SimpleMCMCPostSample.cc.o CMakeFiles/prime-phylo.dir/SimpleML.cc.o CMakeFiles/prime-phylo.dir/mcmc/MCMCSampler.cc.o CMakeFiles/prime-phylo.dir/mcmc/GSRSampler.cc.o CMakeFiles/prime-phylo.dir/mcmc/PosteriorSampler.cc.o CMakeFiles/prime-phylo.dir/SimpleObserver.cc.o CMakeFiles/prime-phylo.dir/MpiMCMC.cc.o CMakeFiles/prime-phylo.dir/MultiGSR.cc.o CMakeFiles/prime-phylo.dir/MpiMultiGSR.cc.o CMakeFiles/prime-phylo.dir/BDTreeGenerator.cc.o CMakeFiles/prime-phylo.dir/BirthDeathMCMC.cc.o CMakeFiles/prime-phylo.dir/BirthDeathProbs.cc.o CMakeFiles/prime-phylo.dir/CongruentGuestTreeTimeMCMC.cc.o CMakeFiles/prime-phylo.dir/DiscBirthDeathProbs.cc.o CMakeFiles/prime-phylo.dir/EdgeDiscBDMCMC.cc.o CMakeFiles/prime-phylo.dir/EdgeDiscBDProbs.cc.o CMakeFiles/prime-phylo.dir/EdgeDiscGSR.cc.o CMakeFiles/prime-phylo.dir/EpochBDTMCMC.cc.o CMakeFiles/prime-phylo.dir/EpochBDTProbs.cc.o CMakeFiles/prime-phylo.dir/EpochDLTRS.cc.o CMakeFiles/prime-phylo.dir/GammaMap.cc.o CMakeFiles/prime-phylo.dir/GuestTreeModel.cc.o CMakeFiles/prime-phylo.dir/EnumerateReconciliationModel.cc.o CMakeFiles/prime-phylo.dir/fastGEM_BirthDeathMCMC.cc.o CMakeFiles/prime-phylo.dir/fastGEM_BirthDeathProbs.cc.o CMakeFiles/prime-phylo.dir/fastGEM.cc.o CMakeFiles/prime-phylo.dir/LambdaMap.cc.o CMakeFiles/prime-phylo.dir/MaxReconciledTreeModel.cc.o CMakeFiles/prime-phylo.dir/PerturbationObservable.cc.o CMakeFiles/prime-phylo.dir/ReconciledTreeModel.cc.o CMakeFiles/prime-phylo.dir/ReconciledTreeTimeModel.cc.o CMakeFiles/prime-phylo.dir/ReconciledTreeTimeMCMC.cc.o CMakeFiles/prime-phylo.dir/ReconciliationModel.cc.o CMakeFiles/prime-phylo.dir/ReconciliationSampler.cc.o CMakeFiles/prime-phylo.dir/ReconciliationTimeModel.cc.o CMakeFiles/prime-phylo.dir/ReconciliationTimeMCMC.cc.o CMakeFiles/prime-phylo.dir/ReconciliationTimeSampler.cc.o CMakeFiles/prime-phylo.dir/ReconciliationTreeGenerator.cc.o CMakeFiles/prime-phylo.dir/DLRSOrthoCalculator.cc.o CMakeFiles/prime-phylo.dir/SetOfNodes.cc.o CMakeFiles/prime-phylo.dir/TopTimeMCMC.cc.o CMakeFiles/prime-phylo.dir/HybridBranchSwapping.cc.o CMakeFiles/prime-phylo.dir/HybridTree.cc.o CMakeFiles/prime-phylo.dir/HybridTreeIO.cc.o CMakeFiles/prime-phylo.dir/HybridTreeInputOutput.cc.o CMakeFiles/prime-phylo.dir/BDHybridTreeGenerator.cc.o CMakeFiles/prime-phylo.dir/BirthDeathInHybridProbs.cc.o CMakeFiles/prime-phylo.dir/BirthDeathInHybridMCMC.cc.o CMakeFiles/prime-phylo.dir/HybridBDTreeGenerator.cc.o CMakeFiles/prime-phylo.dir/HybridGuestTreeMCMC.cc.o CMakeFiles/prime-phylo.dir/HybridGuestTreeModel.cc.o CMakeFiles/prime-phylo.dir/HybridHostTreeMCMC.cc.o CMakeFiles/prime-phylo.dir/HybridHostTreeModel.cc.o CMakeFiles/prime-phylo.dir/EnumHybridGuestTreeMCMC.cc.o CMakeFiles/prime-phylo.dir/EnumHybridGuestTreeModel.cc.o CMakeFiles/prime-phylo.dir/CacheSubstitutionModel.cc.o CMakeFiles/prime-phylo.dir/FastCacheSubstitutionModel.cc.o CMakeFiles/prime-phylo.dir/MatrixCache.cc.o CMakeFiles/prime-phylo.dir/TransitionHandler.cc.o CMakeFiles/prime-phylo.dir/MatrixTransitionHandler.cc.o CMakeFiles/prime-phylo.dir/SeqIO.cc.o CMakeFiles/prime-phylo.dir/SequenceGenerator.cc.o CMakeFiles/prime-phylo.dir/SequenceType.cc.o CMakeFiles/prime-phylo.dir/SequenceData.cc.o CMakeFiles/prime-phylo.dir/SubstitutionModel.cc.o CMakeFiles/prime-phylo.dir/SubstitutionMCMC.cc.o CMakeFiles/prime-phylo.dir/LA_Vector.cc.o CMakeFiles/prime-phylo.dir/LA_Matrix.cc.o CMakeFiles/prime-phylo.dir/LA_DiagonalMatrix.cc.o   -L/usr/lib/arm-linux-gnueabihf/liblapack.so  -L/usr/lib/arm-linux-gnueabihf/libblas.so  -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/liblapack.so:/usr/lib/arm-linux-gnueabihf/libblas.so:/usr/lib/arm-linux-gnueabihf/openmpi/lib:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile: -llapack -lblas -lxml2 /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so /usr/lib/arm-linux-gnueabihf/libboost_mpi.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.74.0 ../sfile/libprime-phylo-sfile.so /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 81%] Built target prime-phylo
make  -f src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/build.make src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/depend
make  -f src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/build.make src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/depend
make  -f src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/build.make src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/depend
make  -f src/cxx/tools/treesize/CMakeFiles/treesize.dir/build.make src/cxx/tools/treesize/CMakeFiles/treesize.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/applications/primeDTLSR /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDTLSR /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/applications/primeDLRS /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDLRS /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 82%] Generating cmdline.c, cmdline.h
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/DependInfo.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/depend.internal".
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/DependInfo.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/depend.internal".
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDTLSR/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/depend.internal".
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDLRS/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/depend.internal".
[ 83%] Generating cmdline.c, cmdline.h
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM && /usr/bin/gengetopt -i /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM/cmdline.ggo --file-name=cmdline --output-dir=/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize && /usr/bin/gengetopt -i /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize/cmdline.ggo --file-name=cmdline --output-dir=/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize
Scanning dependencies of target primeDLRS
Scanning dependencies of target primeDTLSR
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make  -f src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/build.make src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make  -f src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/build.make src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/treesize /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize/CMakeFiles/treesize.dir/DependInfo.cmake --color=
[ 83%] Building CXX object src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/primeDLRS.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/applications/primeGEM /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/DependInfo.cmake --color=
[ 83%] Building CXX object src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/idolatrous.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDLRS && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDLRS -I/<<PKGBUILDDIR>>/src/cxx/applications/primeDLRS -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -pthread -o CMakeFiles/primeDLRS.dir/primeDLRS.cc.o -c /<<PKGBUILDDIR>>/src/cxx/applications/primeDLRS/primeDLRS.cc
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDTLSR && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDTLSR -I/<<PKGBUILDDIR>>/src/cxx/applications/primeDTLSR -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -pthread -o CMakeFiles/primeDTLSR.dir/idolatrous.cc.o -c /<<PKGBUILDDIR>>/src/cxx/applications/primeDTLSR/idolatrous.cc
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize/CMakeFiles/treesize.dir/DependInfo.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize/CMakeFiles/treesize.dir/depend.internal".
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize/CMakeFiles/treesize.dir/depend.internal".
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/DependInfo.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/depend.internal".
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/depend.internal".
Scanning dependencies of target treesize
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make  -f src/cxx/tools/treesize/CMakeFiles/treesize.dir/build.make src/cxx/tools/treesize/CMakeFiles/treesize.dir/build
Scanning dependencies of target primeGEM
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make  -f src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/build.make src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 83%] Building CXX object src/cxx/tools/treesize/CMakeFiles/treesize.dir/treesize.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize -I/<<PKGBUILDDIR>>/src/cxx/tools/treesize -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -pthread -o CMakeFiles/treesize.dir/treesize.cc.o -c /<<PKGBUILDDIR>>/src/cxx/tools/treesize/treesize.cc
[ 83%] Building CXX object src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/troyo.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM -I/<<PKGBUILDDIR>>/src/cxx/applications/primeGEM -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -pthread -o CMakeFiles/primeGEM.dir/troyo.cc.o -c /<<PKGBUILDDIR>>/src/cxx/applications/primeGEM/troyo.cc
/<<PKGBUILDDIR>>/src/cxx/tools/treesize/treesize.cc: In function 'int main(int, char**)':
/<<PKGBUILDDIR>>/src/cxx/tools/treesize/treesize.cc:55:13: warning: enumeration value 'input_format__NULL' not handled in switch [-Wswitch]
   55 |       switch(args_info.input_format_arg)
      |             ^
/<<PKGBUILDDIR>>/src/cxx/tools/treesize/treesize.cc:90:18: warning: catching polymorphic type 'class beep::AnError' by value [-Wcatch-value=]
   90 |   catch (AnError e) {
      |                  ^
[ 84%] Building C object src/cxx/tools/treesize/CMakeFiles/treesize.dir/cmdline.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize && /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize -I/<<PKGBUILDDIR>>/src/cxx/tools/treesize -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -pthread -o CMakeFiles/treesize.dir/cmdline.c.o -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize/cmdline.c
[ 85%] Linking CXX executable treesize
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/treesize && /usr/bin/cmake -E cmake_link_script CMakeFiles/treesize.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -Wl,-z,relro -Wl,-z,now -rdynamic -pthread CMakeFiles/treesize.dir/treesize.cc.o CMakeFiles/treesize.dir/cmdline.c.o -o treesize  -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime:/usr/lib/arm-linux-gnueabihf/openmpi/lib:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile: ../../libraries/prime/libprime-phylo.so -llapack -lblas -lxml2 /usr/lib/arm-linux-gnueabihf/libboost_mpi.so.1.74.0 /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.74.0 ../../libraries/sfile/libprime-phylo-sfile.so 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 85%] Built target treesize
make  -f src/cxx/tools/showtree/CMakeFiles/showtree.dir/build.make src/cxx/tools/showtree/CMakeFiles/showtree.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 85%] Generating cmdline.c, cmdline.h
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree && /usr/bin/gengetopt -i /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree/cmdline.ggo --file-name=cmdline --output-dir=/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/showtree /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree/CMakeFiles/showtree.dir/DependInfo.cmake --color=
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree/CMakeFiles/showtree.dir/DependInfo.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree/CMakeFiles/showtree.dir/depend.internal".
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree/CMakeFiles/showtree.dir/depend.internal".
Scanning dependencies of target showtree
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make  -f src/cxx/tools/showtree/CMakeFiles/showtree.dir/build.make src/cxx/tools/showtree/CMakeFiles/showtree.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 86%] Building CXX object src/cxx/tools/showtree/CMakeFiles/showtree.dir/showtree.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree -I/<<PKGBUILDDIR>>/src/cxx/tools/showtree -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -pthread -o CMakeFiles/showtree.dir/showtree.cc.o -c /<<PKGBUILDDIR>>/src/cxx/tools/showtree/showtree.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:9,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochDLTRS.hh:11,
                 from /<<PKGBUILDDIR>>/src/cxx/applications/primeDTLSR/idolatrous.cc:11:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochTree.hh:54:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::EpochTree::MIN_SPLICE_DELTA' of non-integral type [-fpermissive]
   54 |  static const Real MIN_SPLICE_DELTA = 0.0001;
      |                    ^~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTMCMC.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/applications/primeDTLSR/idolatrous.cc:13:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:359:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::C2' of non-integral type [-fpermissive]
  359 |  static const Real C2 =       1.0 /      5.0;
      |                    ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:360:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::C3' of non-integral type [-fpermissive]
  360 |  static const Real C3 =       3.0 /     10.0;
      |                    ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:361:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::C4' of non-integral type [-fpermissive]
  361 |  static const Real C4 =       4.0 /      5.0;
      |                    ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:362:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::C5' of non-integral type [-fpermissive]
  362 |  static const Real C5 =       8.0 /      9.0;
      |                    ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:363:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A21' of non-integral type [-fpermissive]
  363 |  static const Real A21 =      1.0 /      5.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:364:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A31' of non-integral type [-fpermissive]
  364 |  static const Real A31 =      3.0 /     40.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:365:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A32' of non-integral type [-fpermissive]
  365 |  static const Real A32 =      9.0 /     40.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:366:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A41' of non-integral type [-fpermissive]
  366 |  static const Real A41 =     44.0 /     45.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:367:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A42' of non-integral type [-fpermissive]
  367 |  static const Real A42 =    -56.0 /     15.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:368:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A43' of non-integral type [-fpermissive]
  368 |  static const Real A43 =     32.0 /      9.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:369:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A51' of non-integral type [-fpermissive]
  369 |  static const Real A51 =  19372.0 /   6561.0;
      |                    ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:370:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A52' of non-integral type [-fpermissive]
  370 |     static const Real A52 = -25360.0 /   2187.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:371:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A53' of non-integral type [-fpermissive]
  371 |     static const Real A53 =  64448.0 /   6561.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:372:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A54' of non-integral type [-fpermissive]
  372 |     static const Real A54 =   -212.0 /    729.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:373:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A61' of non-integral type [-fpermissive]
  373 |     static const Real A61 =   9017.0 /   3168.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:374:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A62' of non-integral type [-fpermissive]
  374 |     static const Real A62 =   -355.0 /     33.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:375:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A63' of non-integral type [-fpermissive]
  375 |     static const Real A63 =  46732.0 /   5247.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:376:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A64' of non-integral type [-fpermissive]
  376 |     static const Real A64 =     49.0 /    176.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:377:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A65' of non-integral type [-fpermissive]
  377 |     static const Real A65 =  -5103.0 /  18656.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:378:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A71' of non-integral type [-fpermissive]
  378 |     static const Real A71 =     35.0 /    384.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:379:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A73' of non-integral type [-fpermissive]
  379 |     static const Real A73 =    500.0 /   1113.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:380:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A74' of non-integral type [-fpermissive]
  380 |     static const Real A74 =    125.0 /    192.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:381:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A75' of non-integral type [-fpermissive]
  381 |     static const Real A75 =  -2187.0 /   6784.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:382:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::A76' of non-integral type [-fpermissive]
  382 |     static const Real A76 =     11.0 /     84.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:383:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E1' of non-integral type [-fpermissive]
  383 |     static const Real E1 =      71.0 /  57600.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:384:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E3' of non-integral type [-fpermissive]
  384 |     static const Real E3 =     -71.0 /  16695.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:385:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E4' of non-integral type [-fpermissive]
  385 |     static const Real E4 =      71.0 /   1920.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:386:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E5' of non-integral type [-fpermissive]
  386 |     static const Real E5 =  -17253.0 / 339200.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:387:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E6' of non-integral type [-fpermissive]
  387 |     static const Real E6 =      22.0 /    525.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:388:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::E7' of non-integral type [-fpermissive]
  388 |     static const Real E7 =      -1.0 /     40.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:391:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D1' of non-integral type [-fpermissive]
  391 |     static const Real D1 =  -12715105075.0 /  11282082432.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:392:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D3' of non-integral type [-fpermissive]
  392 |     static const Real D3 =   87487479700.0 /  32700410799.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:393:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D4' of non-integral type [-fpermissive]
  393 |     static const Real D4 =  -10690763975.0 /   1880347072.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:394:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D5' of non-integral type [-fpermissive]
  394 |     static const Real D5 =  701980252875.0 / 199316789632.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:395:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D6' of non-integral type [-fpermissive]
  395 |     static const Real D6 =   -1453857185.0 /    822651844.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:396:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::ODESolver::D7' of non-integral type [-fpermissive]
  396 |     static const Real D7 =      69997945.0 /     29380423.0;
      |                       ^~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTMCMC.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/applications/primeDTLSR/idolatrous.cc:13:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:50:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::EpochBDTProbs::REL_TOL' of non-integral type [-fpermissive]
   50 |  static const Real REL_TOL = 1e-6;
      |                    ^~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:55:20: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::EpochBDTProbs::ABS_TOL' of non-integral type [-fpermissive]
   55 |  static const Real ABS_TOL = 1e-6;
      |                    ^~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/applications/primeDTLSR/idolatrous.cc:16:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/InvGaussDensity.hh:89:25: warning: 'constexpr' needed for in-class initialization of static data member 'const double beep::InvGaussDensity::pi' of non-integral type [-fpermissive]
   89 |     static const double pi = 3.14159265358979; //!< math.constant \f$\pi\f$
      |                         ^~
In file included from /<<PKGBUILDDIR>>/src/cxx/applications/primeDTLSR/idolatrous.cc:17:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/LogNormDensity.hh:81:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::LogNormDensity::pi' of non-integral type [-fpermissive]
   81 |     static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$.
      |                       ^~
In file included from /<<PKGBUILDDIR>>/src/cxx/applications/primeDTLSR/idolatrous.cc:23:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SiteRateHandler.hh:83:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::SiteRateHandler::MAX' of non-integral type [-fpermissive]
   83 |     static const Real MAX = 1e10; //!< rates do not change for alpha > MAX.
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/applications/primeGEM/troyo.cc: In function 'int main(int, char**)':
/<<PKGBUILDDIR>>/src/cxx/applications/primeGEM/troyo.cc:197:18: warning: catching polymorphic type 'class beep::AnError' by value [-Wcatch-value=]
  197 |    catch(AnError e)
      |                  ^
/<<PKGBUILDDIR>>/src/cxx/tools/showtree/showtree.cc: In function 'void outputSingleTree(beep::Tree&, beep::TreeIOTraits&, gengetopt_args_info&)':
/<<PKGBUILDDIR>>/src/cxx/tools/showtree/showtree.cc:30:20: warning: variable 'nw' set but not used [-Wunused-but-set-variable]
   30 |   bool et, nt, bl, nw;
      |                    ^~
/<<PKGBUILDDIR>>/src/cxx/tools/showtree/showtree.cc: In function 'int main(int, char**)':
/<<PKGBUILDDIR>>/src/cxx/tools/showtree/showtree.cc:174:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<beep::Tree>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  174 |        if(args_info.tree_number_arg >= Tvec.size())
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/tools/showtree/showtree.cc:198:18: warning: catching polymorphic type 'class beep::AnError' by value [-Wcatch-value=]
  198 |   catch (AnError e)
      |                  ^
In file included from /<<PKGBUILDDIR>>/src/cxx/applications/primeDLRS/primeDLRS.cc:13:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/InvGaussDensity.hh:89:25: warning: 'constexpr' needed for in-class initialization of static data member 'const double beep::InvGaussDensity::pi' of non-integral type [-fpermissive]
   89 |     static const double pi = 3.14159265358979; //!< math.constant \f$\pi\f$
      |                         ^~
In file included from /<<PKGBUILDDIR>>/src/cxx/applications/primeDLRS/primeDLRS.cc:14:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/LogNormDensity.hh:81:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::LogNormDensity::pi' of non-integral type [-fpermissive]
   81 |     static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$.
      |                       ^~
In file included from /<<PKGBUILDDIR>>/src/cxx/applications/primeDLRS/primeDLRS.cc:22:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SiteRateHandler.hh:83:23: warning: 'constexpr' needed for in-class initialization of static data member 'const Real beep::SiteRateHandler::MAX' of non-integral type [-fpermissive]
   83 |     static const Real MAX = 1e10; //!< rates do not change for alpha > MAX.
      |                       ^~~
[ 86%] Building C object src/cxx/tools/showtree/CMakeFiles/showtree.dir/cmdline.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree && /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree -I/<<PKGBUILDDIR>>/src/cxx/tools/showtree -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -pthread -o CMakeFiles/showtree.dir/cmdline.c.o -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree/cmdline.c
[ 87%] Linking CXX executable showtree
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/showtree && /usr/bin/cmake -E cmake_link_script CMakeFiles/showtree.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -Wl,-z,relro -Wl,-z,now -rdynamic -pthread CMakeFiles/showtree.dir/showtree.cc.o CMakeFiles/showtree.dir/cmdline.c.o -o showtree  -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime:/usr/lib/arm-linux-gnueabihf/openmpi/lib:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile: ../../libraries/prime/libprime-phylo.so -llapack -lblas -lxml2 /usr/lib/arm-linux-gnueabihf/libboost_mpi.so.1.74.0 /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.74.0 ../../libraries/sfile/libprime-phylo-sfile.so 
[ 88%] Building C object src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/cmdline.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM && /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM -I/<<PKGBUILDDIR>>/src/cxx/applications/primeGEM -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -pthread -o CMakeFiles/primeGEM.dir/cmdline.c.o -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM/cmdline.c
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 88%] Built target showtree
make  -f src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/build.make src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 89%] Generating cmdline.c, cmdline.h
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile && /usr/bin/gengetopt -i /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile/cmdline.ggo --file-name=cmdline --output-dir=/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/reconcile /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/DependInfo.cmake --color=
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/DependInfo.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/depend.internal".
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/depend.internal".
Scanning dependencies of target reconcile
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make  -f src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/build.make src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 90%] Building CXX object src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/Rootalyzer.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile -I/<<PKGBUILDDIR>>/src/cxx/tools/reconcile -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -pthread -o CMakeFiles/reconcile.dir/Rootalyzer.cc.o -c /<<PKGBUILDDIR>>/src/cxx/tools/reconcile/Rootalyzer.cc
[ 90%] Linking CXX executable primeGEM
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeGEM && /usr/bin/cmake -E cmake_link_script CMakeFiles/primeGEM.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -Wl,-z,relro -Wl,-z,now -rdynamic -pthread CMakeFiles/primeGEM.dir/troyo.cc.o CMakeFiles/primeGEM.dir/cmdline.c.o -o primeGEM  -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime:/usr/lib/arm-linux-gnueabihf/openmpi/lib:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile: ../../libraries/prime/libprime-phylo.so -llapack -lblas -lxml2 /usr/lib/arm-linux-gnueabihf/libboost_mpi.so.1.74.0 /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.74.0 ../../libraries/sfile/libprime-phylo-sfile.so 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 90%] Built target primeGEM
make  -f src/cxx/tools/reroot/CMakeFiles/reroot.dir/build.make src/cxx/tools/reroot/CMakeFiles/reroot.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 91%] Generating cmdline.c, cmdline.h
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot && /usr/bin/gengetopt -i /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot/cmdline.ggo --file-name=cmdline --output-dir=/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/reroot /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot/CMakeFiles/reroot.dir/DependInfo.cmake --color=
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot/CMakeFiles/reroot.dir/DependInfo.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot/CMakeFiles/reroot.dir/depend.internal".
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot/CMakeFiles/reroot.dir/depend.internal".
Scanning dependencies of target reroot
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make  -f src/cxx/tools/reroot/CMakeFiles/reroot.dir/build.make src/cxx/tools/reroot/CMakeFiles/reroot.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 91%] Building CXX object src/cxx/tools/reroot/CMakeFiles/reroot.dir/reroot.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot -I/<<PKGBUILDDIR>>/src/cxx/tools/reroot -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -pthread -o CMakeFiles/reroot.dir/reroot.cc.o -c /<<PKGBUILDDIR>>/src/cxx/tools/reroot/reroot.cc
[ 92%] Linking CXX executable primeDTLSR
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDTLSR && /usr/bin/cmake -E cmake_link_script CMakeFiles/primeDTLSR.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -Wl,-z,relro -Wl,-z,now -rdynamic -pthread CMakeFiles/primeDTLSR.dir/idolatrous.cc.o -o primeDTLSR  -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile:/usr/lib/arm-linux-gnueabihf/openmpi/lib: ../../libraries/prime/libprime-phylo.so ../../libraries/sfile/libprime-phylo-sfile.so -llapack -lblas -lxml2 /usr/lib/arm-linux-gnueabihf/libboost_mpi.so.1.74.0 /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.74.0 
[ 92%] Building CXX object src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/reconcile.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile -I/<<PKGBUILDDIR>>/src/cxx/tools/reconcile -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -pthread -o CMakeFiles/reconcile.dir/reconcile.cc.o -c /<<PKGBUILDDIR>>/src/cxx/tools/reconcile/reconcile.cc
[ 93%] Linking CXX executable primeDLRS
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/applications/primeDLRS && /usr/bin/cmake -E cmake_link_script CMakeFiles/primeDLRS.dir/link.txt --verbose=1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -Wl,-z,relro -Wl,-z,now -rdynamic -pthread CMakeFiles/primeDLRS.dir/primeDLRS.cc.o -o primeDLRS  -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile:/usr/lib/arm-linux-gnueabihf/openmpi/lib: ../../libraries/prime/libprime-phylo.so ../../libraries/sfile/libprime-phylo-sfile.so -llapack -lblas -lxml2 /usr/lib/arm-linux-gnueabihf/libboost_mpi.so.1.74.0 /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.74.0 
[ 93%] Built target primeDTLSR
[ 94%] Building C object src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/cmdline.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile && /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile -I/<<PKGBUILDDIR>>/src/cxx/tools/reconcile -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -pthread -o CMakeFiles/reconcile.dir/cmdline.c.o -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile/cmdline.c
/<<PKGBUILDDIR>>/src/cxx/tools/reroot/reroot.cc: In function 'int main(int, char**)':
/<<PKGBUILDDIR>>/src/cxx/tools/reroot/reroot.cc:76:13: warning: enumeration value 'input_format__NULL' not handled in switch [-Wswitch]
   76 |       switch(args_info.input_format_arg)
      |             ^
/<<PKGBUILDDIR>>/src/cxx/tools/reroot/reroot.cc:181:18: warning: catching polymorphic type 'class beep::AnError' by value [-Wcatch-value=]
  181 |   catch (AnError e) {
      |                  ^
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 94%] Built target primeDLRS
[ 95%] Building C object src/cxx/tools/reroot/CMakeFiles/reroot.dir/cmdline.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot && /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot -I/<<PKGBUILDDIR>>/src/cxx/tools/reroot -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -pthread -o CMakeFiles/reroot.dir/cmdline.c.o -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot/cmdline.c
make  -f src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/build.make src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 95%] Generating cmdline.c, cmdline.h
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames && /usr/bin/gengetopt -i /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames/cmdline.ggo --file-name=cmdline --output-dir=/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/DependInfo.cmake --color=
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/DependInfo.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/depend.internal".
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/depend.internal".
Scanning dependencies of target tree2leafnames
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make  -f src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/build.make src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Building CXX object src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/tree2leafnames.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames -I/<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -pthread -o CMakeFiles/tree2leafnames.dir/tree2leafnames.cc.o -c /<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames/tree2leafnames.cc
make  -f src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/build.make src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Generating cmdline.c, cmdline.h
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw && /usr/bin/gengetopt -i /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw/cmdline.ggo --file-name=cmdline --output-dir=/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/chainsaw /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/DependInfo.cmake --color=
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/DependInfo.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/depend.internal".
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/depend.internal".
Scanning dependencies of target chainsaw
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make  -f src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/build.make src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 97%] Building CXX object src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/chainsaw.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw -I/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -pthread -o CMakeFiles/chainsaw.dir/chainsaw.cc.o -c /<<PKGBUILDDIR>>/src/cxx/tools/chainsaw/chainsaw.cc
/<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames/tree2leafnames.cc: In function 'int main(int, char**)':
/<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames/tree2leafnames.cc:51:11: warning: enumeration value 'input_format__NULL' not handled in switch [-Wswitch]
   51 |     switch(args_info.input_format_arg)
      |           ^
/<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames/tree2leafnames.cc:95:18: warning: catching polymorphic type 'class beep::AnError' by value [-Wcatch-value=]
   95 |   catch (AnError e) {
      |                  ^
[ 98%] Building C object src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/cmdline.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames && /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames -I/<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -pthread -o CMakeFiles/tree2leafnames.dir/cmdline.c.o -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames/cmdline.c
[ 98%] Linking CXX executable tree2leafnames
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/tree2leafnames && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree2leafnames.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -Wl,-z,relro -Wl,-z,now -rdynamic -pthread CMakeFiles/tree2leafnames.dir/tree2leafnames.cc.o CMakeFiles/tree2leafnames.dir/cmdline.c.o -o tree2leafnames  -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime:/usr/lib/arm-linux-gnueabihf/openmpi/lib:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile: ../../libraries/prime/libprime-phylo.so -llapack -lblas -lxml2 /usr/lib/arm-linux-gnueabihf/libboost_mpi.so.1.74.0 /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.74.0 ../../libraries/sfile/libprime-phylo-sfile.so 
[ 99%] Linking CXX executable reroot
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reroot && /usr/bin/cmake -E cmake_link_script CMakeFiles/reroot.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -Wl,-z,relro -Wl,-z,now -rdynamic -pthread CMakeFiles/reroot.dir/reroot.cc.o CMakeFiles/reroot.dir/cmdline.c.o -o reroot  -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime:/usr/lib/arm-linux-gnueabihf/openmpi/lib:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile: ../../libraries/prime/libprime-phylo.so -llapack -lblas -lxml2 /usr/lib/arm-linux-gnueabihf/libboost_mpi.so.1.74.0 /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.74.0 ../../libraries/sfile/libprime-phylo-sfile.so 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 99%] Built target tree2leafnames
[ 99%] Building C object src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/cmdline.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw && /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw -I/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw -I/usr/lib/arm-linux-gnueabihf/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -pthread -o CMakeFiles/chainsaw.dir/cmdline.c.o -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw/cmdline.c
/<<PKGBUILDDIR>>/src/cxx/tools/reconcile/reconcile.cc: In function 'int main(int, char**)':
/<<PKGBUILDDIR>>/src/cxx/tools/reconcile/reconcile.cc:37:21: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
   37 |   char *ofilename = "mpr.out";
      |                     ^~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/tools/reconcile/reconcile.cc:128:18: warning: catching polymorphic type 'class beep::AnError' by value [-Wcatch-value=]
  128 |   catch (AnError e) {
      |                  ^
/<<PKGBUILDDIR>>/src/cxx/tools/reconcile/reconcile.cc: In function 'void populateGsMap(beep::Tree, beep::StrStrMap&)':
/<<PKGBUILDDIR>>/src/cxx/tools/reconcile/reconcile.cc:157:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  157 |     for (int i = 0; i < gtree.getNumberOfNodes(); i++) {
      |                     ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 99%] Built target reroot
/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw/chainsaw.cc: In function 'beep::Tree ReadGuestTree(gengetopt_args_info&, std::vector<beep::SetOfNodes>*, beep::StrStrMap*)':
/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw/chainsaw.cc:90:9: warning: enumeration value 'guest_tree_format__NULL' not handled in switch [-Wswitch]
   90 |   switch(ai.guest_tree_format_arg)
      |         ^
/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw/chainsaw.cc: In function 'beep::Tree ReadHostTree(gengetopt_args_info&)':
/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw/chainsaw.cc:114:9: warning: enumeration value 'host_tree_format__NULL' not handled in switch [-Wswitch]
  114 |   switch(ai.host_tree_format_arg)
      |         ^
/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw/chainsaw.cc: In function 'int main(int, char**)':
/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw/chainsaw.cc:163:17: warning: catching polymorphic type 'class beep::AnError' by value [-Wcatch-value=]
  163 |  catch (AnError e) {
      |                 ^
/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw/chainsaw.cc:188:18: warning: catching polymorphic type 'class beep::AnError' by value [-Wcatch-value=]
  188 |   catch (AnError e) {
      |                  ^
[ 99%] Linking CXX executable reconcile
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/reconcile && /usr/bin/cmake -E cmake_link_script CMakeFiles/reconcile.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -Wl,-z,relro -Wl,-z,now -rdynamic -pthread CMakeFiles/reconcile.dir/Rootalyzer.cc.o CMakeFiles/reconcile.dir/reconcile.cc.o CMakeFiles/reconcile.dir/cmdline.c.o -o reconcile  -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime:/usr/lib/arm-linux-gnueabihf/openmpi/lib:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile: ../../libraries/prime/libprime-phylo.so -llapack -lblas -lxml2 /usr/lib/arm-linux-gnueabihf/libboost_mpi.so.1.74.0 /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.74.0 ../../libraries/sfile/libprime-phylo-sfile.so 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 99%] Built target reconcile
[100%] Linking CXX executable chainsaw
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/tools/chainsaw && /usr/bin/cmake -E cmake_link_script CMakeFiles/chainsaw.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -Wl,-z,relro -Wl,-z,now -rdynamic -pthread CMakeFiles/chainsaw.dir/chainsaw.cc.o CMakeFiles/chainsaw.dir/cmdline.c.o -o chainsaw  -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/prime:/usr/lib/arm-linux-gnueabihf/openmpi/lib:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/cxx/libraries/sfile: ../../libraries/prime/libprime-phylo.so -llapack -lblas -lxml2 /usr/lib/arm-linux-gnueabihf/libboost_mpi.so.1.74.0 /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.74.0 ../../libraries/sfile/libprime-phylo-sfile.so 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target chainsaw
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
   dh_auto_test -a -O--buildsystem=cmake
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=cmake
   dh_prep -a -O--buildsystem=cmake
   dh_auto_install -a -O--buildsystem=cmake
	cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/prime-phylo AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Debug"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/chainsaw.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/mcmc_analysis.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/primeDLRS.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/primeDTLSR.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/primeGEM.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/reconcile.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/reroot.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/showtree.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/tree2leafnames.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/treesize.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/lib/prime-phylo/libprime-phylo.so
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/lib/prime-phylo/libprime-phylo.so" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/lib/prime-phylo/libprime-phylo-sfile.so
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/lib/prime-phylo/libprime-phylo-sfile.so" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/primeGEM
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/primeGEM" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/primeDTLSR
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/primeDTLSR" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/primeDLRS
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/primeDLRS" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/treesize
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/treesize" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/showtree
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/showtree" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/reconcile
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/reconcile" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/reroot
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/reroot" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/tree2leafnames
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/tree2leafnames" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/chainsaw
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/chainsaw" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/mcmc_analysis
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
   dh_installdocs -a -O--buildsystem=cmake
   dh_installchangelogs -a -O--buildsystem=cmake
   dh_installexamples -a -O--buildsystem=cmake
   dh_installman -a -O--buildsystem=cmake
   dh_installsystemduser -a -O--buildsystem=cmake
   dh_perl -a -O--buildsystem=cmake
   dh_link -a -O--buildsystem=cmake
   dh_strip_nondeterminism -a -O--buildsystem=cmake
   dh_compress -a -O--buildsystem=cmake
   dh_fixperms -a -O--buildsystem=cmake
   dh_missing -a -O--buildsystem=cmake
   dh_dwz -a -a -O--buildsystem=cmake
   dh_strip -a -a -O--buildsystem=cmake
   debian/rules override_dh_makeshlibs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_makeshlibs -pprime-phylo -Xprime-phylo.so -Xprime-phylo-sfile.so
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_shlibdeps -a -a -O--buildsystem=cmake
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: debian/prime-phylo/usr/bin/primeDLRS contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: debian/prime-phylo/usr/bin/chainsaw contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: debian/prime-phylo/usr/bin/reconcile contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: debian/prime-phylo/usr/bin/primeDTLSR contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: debian/prime-phylo/usr/bin/tree2leafnames contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: debian/prime-phylo/usr/bin/reroot contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: debian/prime-phylo/usr/bin/primeGEM contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: debian/prime-phylo/usr/bin/treesize contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: debian/prime-phylo/usr/lib/prime-phylo/libprime-phylo.so contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: debian/prime-phylo/usr/bin/showtree contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
   dh_installdeb -a -O--buildsystem=cmake
   dh_gencontrol -a -O--buildsystem=cmake
   dh_md5sums -a -O--buildsystem=cmake
   dh_builddeb -a -O--buildsystem=cmake
dpkg-deb: building package 'prime-phylo-dbgsym' in '../prime-phylo-dbgsym_1.0.11-10_armhf.deb'.
dpkg-deb: building package 'prime-phylo' in '../prime-phylo_1.0.11-10_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../prime-phylo_1.0.11-10_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-08-21T15:32:21Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


prime-phylo_1.0.11-10_armhf.changes:
------------------------------------

Format: 1.8
Date: Sun, 15 Aug 2021 19:41:37 +0530
Source: prime-phylo
Binary: prime-phylo prime-phylo-dbgsym
Architecture: armhf
Version: 1.0.11-10
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
 prime-phylo - bayesian estimation of gene trees taking the species tree into ac
Changes:
 prime-phylo (1.0.11-10) unstable; urgency=medium
 .
   * Team Upload.
   [ Shruti Sridhar ]
   * Add test data
   * Add autopkgtests
   * Install README as docs
 .
   [ Nilesh Patra ]
   * Add d/salsa-ci.yml
   * Bump Standards-Version to 4.5.1 (no changes needed)
Checksums-Sha1:
 f04d7acb0c76ae531a76a327f1d65dd0efc05f17 8883080 prime-phylo-dbgsym_1.0.11-10_armhf.deb
 71476d24a812f2125e33b41bd72441b92e3519d6 7897 prime-phylo_1.0.11-10_armhf.buildinfo
 62ba5652a7902fc9430bfe8129d283525e53f6e5 688292 prime-phylo_1.0.11-10_armhf.deb
Checksums-Sha256:
 c438994df000da1e0edc0f559d84b0ea4b26e423107dab1454a452f9654c791a 8883080 prime-phylo-dbgsym_1.0.11-10_armhf.deb
 a6514531f645fe211a349aff80e5652bf3edbd59215b1dfc66cd3ef8a96ae25c 7897 prime-phylo_1.0.11-10_armhf.buildinfo
 0430d1549b9b4fbe7cac80331614bded45f5211d2ad5aabb2f66c9846c78cf63 688292 prime-phylo_1.0.11-10_armhf.deb
Files:
 bbad937dc7450619ca2a0d83a38b157b 8883080 debug optional prime-phylo-dbgsym_1.0.11-10_armhf.deb
 6071d1fade73cdda6e4ec33e74b63525 7897 science optional prime-phylo_1.0.11-10_armhf.buildinfo
 ca7d8b9f1e439be493dc17fa47a454e9 688292 science optional prime-phylo_1.0.11-10_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


prime-phylo-dbgsym_1.0.11-10_armhf.deb
--------------------------------------

 new Debian package, version 2.0.
 size 8883080 bytes: control archive=1096 bytes.
     801 bytes,    12 lines      control              
    1257 bytes,    12 lines      md5sums              
 Package: prime-phylo-dbgsym
 Source: prime-phylo
 Version: 1.0.11-10
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 9367
 Depends: prime-phylo (= 1.0.11-10)
 Section: debug
 Priority: optional
 Description: debug symbols for prime-phylo
 Build-Ids: 0c0e8900186af5a841261e7015108ed065013081 81e385a93c63b66a881ced8d64743d88a10408bb 88318030082a62aecb127d19ef9371996c1bab5c 90f35a5867826c5d82ec109d21aab8aafe1d946a 924ef6fc9935852c756b8d2b3634f49fa70c11dd a90409ae08e56acc4464210d7e308cd9591f10a9 ab81e1e6a6178d8e96451c0218f20710d28fa5e2 c569fa1a0f28b90b239f53dee3db44b5accfc543 f23636fa5f487cf5fe7de5261a5335d3c54fe9e8 f8204ccedc8c7b596171fd7f2ae241745f62f081 f9319c1bbef828cf0218b43bac47cce1ef8f9bdb

drwxr-xr-x root/root         0 2021-08-15 14:11 ./
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/lib/
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/lib/debug/
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/lib/debug/.build-id/0c/
-rw-r--r-- root/root     35868 2021-08-15 14:11 ./usr/lib/debug/.build-id/0c/0e8900186af5a841261e7015108ed065013081.debug
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/lib/debug/.build-id/81/
-rw-r--r-- root/root     44080 2021-08-15 14:11 ./usr/lib/debug/.build-id/81/e385a93c63b66a881ced8d64743d88a10408bb.debug
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/lib/debug/.build-id/88/
-rw-r--r-- root/root     46220 2021-08-15 14:11 ./usr/lib/debug/.build-id/88/318030082a62aecb127d19ef9371996c1bab5c.debug
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/lib/debug/.build-id/90/
-rw-r--r-- root/root   8437512 2021-08-15 14:11 ./usr/lib/debug/.build-id/90/f35a5867826c5d82ec109d21aab8aafe1d946a.debug
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/lib/debug/.build-id/92/
-rw-r--r-- root/root    237048 2021-08-15 14:11 ./usr/lib/debug/.build-id/92/4ef6fc9935852c756b8d2b3634f49fa70c11dd.debug
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/lib/debug/.build-id/a9/
-rw-r--r-- root/root    256084 2021-08-15 14:11 ./usr/lib/debug/.build-id/a9/0409ae08e56acc4464210d7e308cd9591f10a9.debug
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/lib/debug/.build-id/ab/
-rw-r--r-- root/root     40212 2021-08-15 14:11 ./usr/lib/debug/.build-id/ab/81e1e6a6178d8e96451c0218f20710d28fa5e2.debug
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/lib/debug/.build-id/c5/
-rw-r--r-- root/root     31340 2021-08-15 14:11 ./usr/lib/debug/.build-id/c5/69fa1a0f28b90b239f53dee3db44b5accfc543.debug
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/lib/debug/.build-id/f2/
-rw-r--r-- root/root    138692 2021-08-15 14:11 ./usr/lib/debug/.build-id/f2/3636fa5f487cf5fe7de5261a5335d3c54fe9e8.debug
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/lib/debug/.build-id/f8/
-rw-r--r-- root/root     68192 2021-08-15 14:11 ./usr/lib/debug/.build-id/f8/204ccedc8c7b596171fd7f2ae241745f62f081.debug
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/lib/debug/.build-id/f9/
-rw-r--r-- root/root    105396 2021-08-15 14:11 ./usr/lib/debug/.build-id/f9/319c1bbef828cf0218b43bac47cce1ef8f9bdb.debug
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root    121196 2021-08-15 14:11 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/prime-phylo.debug
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/share/
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/share/doc/
lrwxrwxrwx root/root         0 2021-08-15 14:11 ./usr/share/doc/prime-phylo-dbgsym -> prime-phylo


prime-phylo_1.0.11-10_armhf.deb
-------------------------------

 new Debian package, version 2.0.
 size 688292 bytes: control archive=1780 bytes.
    1086 bytes,    19 lines      control              
    2098 bytes,    32 lines      md5sums              
 Package: prime-phylo
 Version: 1.0.11-10
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 2489
 Depends: perl:any, libblas3 | libblas.so.3, libboost-mpi1.74.0 (>= 1.74.0), libboost-serialization1.74.0 (>= 1.74.0), libc6 (>= 2.29), libgcc-s1 (>= 3.5), liblapack3 | liblapack.so.3, libopenmpi3 (>= 4.1.0), libstdc++6 (>= 9), libxml2 (>= 2.7.4)
 Suggests: njplot, treeviewx, muscle, probalign, mafft, python3-biopython, mrbayes, phyml, raxml
 Section: science
 Priority: optional
 Homepage: http://prime.sbc.su.se
 Description: bayesian estimation of gene trees taking the species tree into account
  PrIME (Probabilistic Integrated Models of Evolution) is a package
  supporting inference of evolutionary parameters in a Bayesian framework
  using Markov chain Monte Carlo simulation. A distinguishing feature of
  PrIME is that the species tree is taken into account when analyzing gene
  trees.
  .
  The input data to PrIME is a multiple sequence alignment in FASTA format
  and the output data contains trees in Newick format.

drwxr-xr-x root/root         0 2021-08-15 14:11 ./
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/bin/
-rwxr-xr-x root/root     26444 2021-08-15 14:11 ./usr/bin/chainsaw
-rwxr-xr-x root/root     33128 2012-12-17 15:52 ./usr/bin/mcmc_analysis
-rwxr-xr-x root/root     83604 2021-08-15 14:11 ./usr/bin/primeDLRS
-rwxr-xr-x root/root     87700 2021-08-15 14:11 ./usr/bin/primeDTLSR
-rwxr-xr-x root/root     34932 2021-08-15 14:11 ./usr/bin/primeGEM
lrwxrwxrwx root/root         0 2021-08-15 14:11 ./usr/bin/primeGSRf -> primeDLRS
-rwxr-xr-x root/root     38680 2021-08-15 14:11 ./usr/bin/reconcile
-rwxr-xr-x root/root     42872 2021-08-15 14:11 ./usr/bin/reroot
-rwxr-xr-x root/root     26580 2021-08-15 14:11 ./usr/bin/showtree
-rwxr-xr-x root/root     18176 2021-08-15 14:11 ./usr/bin/tree2leafnames
-rwxr-xr-x root/root     18196 2021-08-15 14:11 ./usr/bin/treesize
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/lib/
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/lib/prime-phylo/
-rw-r--r-- root/root     42540 2021-08-15 14:11 ./usr/lib/prime-phylo/libprime-phylo-sfile.so
-rw-r--r-- root/root   2041480 2021-08-15 14:11 ./usr/lib/prime-phylo/libprime-phylo.so
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/share/
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/share/doc/
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/share/doc/prime-phylo/
-rw-r--r-- root/root       381 2012-12-17 15:52 ./usr/share/doc/prime-phylo/README
-rw-r--r-- root/root       532 2021-05-20 11:51 ./usr/share/doc/prime-phylo/README.test
-rw-r--r-- root/root      1142 2021-08-15 14:11 ./usr/share/doc/prime-phylo/changelog.Debian.gz
-rw-r--r-- root/root       505 2012-12-17 15:52 ./usr/share/doc/prime-phylo/changelog.gz
-rw-r--r-- root/root      7287 2021-05-20 11:51 ./usr/share/doc/prime-phylo/copyright
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/share/doc/prime-phylo/examples/
-rw-r--r-- root/root       393 2021-05-20 11:51 ./usr/share/doc/prime-phylo/examples/gse
-rw-r--r-- root/root       162 2021-05-20 11:51 ./usr/share/doc/prime-phylo/examples/hostfile
-rw-r--r-- root/root      3513 2021-05-20 11:51 ./usr/share/doc/prime-phylo/examples/seqfile
-rw-r--r-- root/root        14 2021-05-20 11:51 ./usr/share/doc/prime-phylo/examples/treefile
-rw-r--r-- root/root       974 2021-08-15 14:08 ./usr/share/doc/prime-phylo/run-unit-test
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/share/man/
drwxr-xr-x root/root         0 2021-08-15 14:11 ./usr/share/man/man1/
-rw-r--r-- root/root       653 2021-08-15 14:11 ./usr/share/man/man1/chainsaw.1.gz
-rw-r--r-- root/root      1284 2021-08-15 14:11 ./usr/share/man/man1/mcmc_analysis.1.gz
-rw-r--r-- root/root      2154 2021-08-15 14:11 ./usr/share/man/man1/primeDLRS.1.gz
-rw-r--r-- root/root      1992 2021-08-15 14:11 ./usr/share/man/man1/primeDTLSR.1.gz
-rw-r--r-- root/root       987 2021-08-15 14:11 ./usr/share/man/man1/primeGEM.1.gz
lrwxrwxrwx root/root         0 2021-08-15 14:11 ./usr/share/man/man1/primeGSRf.1.gz -> primeDLRS.1.gz
-rw-r--r-- root/root       654 2021-08-15 14:11 ./usr/share/man/man1/reconcile.1.gz
-rw-r--r-- root/root       886 2021-08-15 14:11 ./usr/share/man/man1/reroot.1.gz
-rw-r--r-- root/root       904 2021-08-15 14:11 ./usr/share/man/man1/showtree.1.gz
-rw-r--r-- root/root       494 2021-08-15 14:11 ./usr/share/man/man1/tree2leafnames.1.gz
-rw-r--r-- root/root       608 2021-08-15 14:11 ./usr/share/man/man1/treesize.1.gz


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 131400
Build-Time: 1095
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 783
Job: prime-phylo_1.0.11-10
Machine Architecture: armhf
Package: prime-phylo
Package-Time: 1926
Source-Version: 1.0.11-10
Space: 131400
Status: successful
Version: 1.0.11-10
--------------------------------------------------------------------------------
Finished at 2021-08-21T15:32:21Z
Build needed 00:32:06, 131400k disc space