plink2 →
2.00~a3-200511+dfsg-1 →
armhf → 2020-06-05 02:06:59
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard
+==============================================================================+
| plink2 2.00~a3-200511+dfsg-1 (armhf) Fri, 05 Jun 2020 01:57:06 +0000 |
+==============================================================================+
Package: plink2
Version: 2.00~a3-200511+dfsg-1
Source Version: 2.00~a3-200511+dfsg-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-d320dd5e-a40b-4634-8500-fa42e084f88f' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.5 MB in 28s (865 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'plink2' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/plink2.git
Please use:
git clone https://salsa.debian.org/med-team/plink2.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 875 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main plink2 2.00~a3-200511+dfsg-1 (dsc) [2128 B]
Get:2 http://172.17.0.1/private bullseye-staging/main plink2 2.00~a3-200511+dfsg-1 (tar) [825 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main plink2 2.00~a3-200511+dfsg-1 (diff) [47.6 kB]
Fetched 875 kB in 1s (1570 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/plink2-ucuTGG/plink2-2.00~a3-200511+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/plink2-ucuTGG' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-b6VIqy/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-b6VIqy/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-b6VIqy/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-b6VIqy/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-b6VIqy/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-b6VIqy/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-b6VIqy/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-b6VIqy/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2784 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 33 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-b6VIqy/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.6 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12255 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), help2man, libatlas-base-dev, liblapack-dev, libzstd-dev (>= 1.4.4), zlib1g-dev, libsimde-dev, libdeflate-dev
Filtered Build-Depends: debhelper-compat (= 12), help2man, libatlas-base-dev, liblapack-dev, libzstd-dev (>= 1.4.4), zlib1g-dev, libsimde-dev, libdeflate-dev
dpkg-deb: building package 'sbuild-build-depends-plink2-dummy' in '/<<BUILDDIR>>/resolver-b6VIqy/apt_archive/sbuild-build-depends-plink2-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-plink2-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-b6VIqy/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-b6VIqy/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-b6VIqy/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-b6VIqy/apt_archive ./ Sources [548 B]
Get:5 copy:/<<BUILDDIR>>/resolver-b6VIqy/apt_archive ./ Packages [627 B]
Fetched 2508 B in 1s (2865 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install plink2 build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gcc-10-base gettext
gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libatlas-base-dev libatlas3-base libatomic1 libbsd0 libcc1-0 libcroco3
libdebhelper-perl libdeflate-dev libdeflate0 libelf1
libfile-stripnondeterminism-perl libgcc-s1 libgfortran5 libglib2.0-0
libgomp1 libicu63 liblapack-dev liblapack3 liblocale-gettext-perl
libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsimde-dev libstdc++6
libsub-override-perl libtinfo5 libtool libubsan1 libuchardet0 libxml2
libzstd-dev m4 man-db po-debconf sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libatlas-doc liblapack-doc libtool-doc gfortran | fortran95-compiler gcj-jdk
m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following packages will be REMOVED:
libgcc1*
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base help2man intltool-debian libarchive-zip-perl libatlas-base-dev
libatlas3-base libbsd0 libcroco3 libdebhelper-perl libdeflate-dev
libdeflate0 libelf1 libfile-stripnondeterminism-perl libgfortran5
libglib2.0-0 libicu63 liblapack-dev liblapack3 liblocale-gettext-perl
libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsimde-dev
libsub-override-perl libtinfo5 libtool libuchardet0 libxml2 libzstd-dev m4
man-db po-debconf sbuild-build-depends-plink2-dummy sensible-utils
zlib1g-dev
The following packages will be upgraded:
gcc-10-base libatomic1 libcc1-0 libgcc-s1 libgomp1 libstdc++6 libubsan1
7 upgraded, 48 newly installed, 1 to remove and 26 not upgraded.
Need to get 30.3 MB of archives.
After this operation, 121 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-b6VIqy/apt_archive ./ sbuild-build-depends-plink2-dummy 0.invalid.0 [916 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf liblocale-gettext-perl armhf 1.07-4 [18.1 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libatomic1 armhf 10.1.0-2+rpi1 [8172 B]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libubsan1 armhf 10.1.0-2+rpi1 [115 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libgomp1 armhf 10.1.0-2+rpi1 [82.9 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf gcc-10-base armhf 10.1.0-2+rpi1 [197 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libgcc-s1 armhf 10.1.0-2+rpi1 [36.1 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libcc1-0 armhf 10.1.0-2+rpi1 [31.7 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libstdc++6 armhf 10.1.0-2+rpi1 [408 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.1-1 [1262 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-1 [775 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.1 [187 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.8.1-1 [25.2 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.8.1-1 [14.9 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.3-1 [1159 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-3 [7987 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5 [592 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.1 [1012 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf help2man armhf 1.47.15 [181 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.1.0-2+rpi1 [232 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libatlas3-base armhf 3.10.3-10+rpi1 [2454 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libatlas-base-dev armhf 3.10.3-10+rpi1 [2601 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.6-1 [47.4 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libdeflate-dev armhf 1.6-1 [40.8 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-2 [1602 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.9.0-2 [2981 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libsimde-dev all 0.0.0.git.20200531-1 [117 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libzstd-dev armhf 1.4.4+dfsg-3+rpi1 [259 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libubsan1:armhf (10.1.0-2+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
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Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.2-1) ...
Setting up libdeflate-dev:armhf (1.6-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.10+dfsg-5) ...
Setting up libcc1-0:armhf (10.1.0-2+rpi1) ...
Setting up liblocale-gettext-perl (1.07-4) ...
Setting up libfile-stripnondeterminism-perl (1.8.1-1) ...
Setting up libatlas3-base:armhf (3.10.3-10+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/atlas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/atlas/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libtool (2.4.6-14) ...
Setting up m4 (1.4.18-4) ...
Setting up libatlas-base-dev:armhf (3.10.3-10+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/atlas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/atlas/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up help2man (1.47.15) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.8.1-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up man-db (2.9.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up liblapack-dev:armhf (3.9.0-2) ...
Setting up po-debconf (1.0.21) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.1) ...
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Processing triggers for libc-bin (2.30-8+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.34-8+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-12+rpi1 gcc-9_9.3.0-12+rpi1 libc6-dev_2.30-8+rpi1 libstdc++-9-dev_9.3.0-12+rpi1 libstdc++6_10.1.0-2+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_2.1.4 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-8+rpi1 binutils-arm-linux-gnueabihf_2.34-8+rpi1 binutils-common_2.34-8+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.35.1-5 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.3.0-12+rpi1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.8.1-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.1-5 file_1:5.38-5 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-12+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10.1.0-2+rpi1 gcc-9_9.3.0-12+rpi1 gcc-9-base_9.3.0-12+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 help2man_1.47.15 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-8 libapt-pkg6.0_2.1.4 libarchive-zip-perl_1.68-1 libasan5_9.3.0-12+rpi1 libassuan0_2.5.3-7 libatlas-base-dev_3.10.3-10+rpi1 libatlas3-base_3.10.3-10+rpi1 libatomic1_10.1.0-2+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.34-8+rpi1 libblkid1_2.35.1-5 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-8+rpi1 libc-dev-bin_2.30-8+rpi1 libc6_2.30-8+rpi1 libc6-dev_2.30-8+rpi1 libcap-ng0_0.7.9-2.1+b1 libcap2_1:2.34-2 libcap2-bin_1:2.34-2 libcc1-0_10.1.0-2+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-8+rpi1 libctf0_2.34-8+rpi1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.252 libdebhelper-perl_13.1 libdeflate-dev_1.6-1 libdeflate0_1.6-1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.35.1-5 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.8.1-1 libgcc-9-dev_9.3.0-12+rpi1 libgcc-s1_10.1.0-2+rpi1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_10.1.0-2+rpi1 libglib2.0-0_2.64.3-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2 libgomp1_10.1.0-2+rpi1 libgpg-error0_1.37-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-3 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libksba8_1.3.5-2 liblapack-dev_3.9.0-2 liblapack3_3.9.0-2 libldap-2.4-2_2.4.50+dfsg-1 libldap-common_2.4.50+dfsg-1 liblocale-gettext-perl_1.07-4 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.35.1-5 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1 libpam-cap_1:2.34-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-10 libpipeline1_1.5.2-2 libreadline7_7.0-5 libreadline8_8.0-4 librust-rand-core-dev_0.5.1-1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsimde-dev_0.0.0.git.20200531-1 libsmartcols1_2.35.1-5 libsqlite3-0_3.31.1-5 libss2_1.45.6-1 libstdc++-9-dev_9.3.0-12+rpi1 libstdc++6_10.1.0-2+rpi1 libsub-override-perl_0.09-2 libsystemd0_245.5-3+rpi1 libtasn1-6_4.16.0-2 libtinfo5_6.2-1 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.1.0-2+rpi1 libuchardet0_0.0.6-3 libudev1_245.5-3+rpi1 libunistring2_0.9.10-2 libuuid1_2.35.1-5 libxml2_2.9.10+dfsg-5 libzstd-dev_1.4.4+dfsg-3+rpi1 libzstd1_1.4.4+dfsg-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.35.1-5 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.30_5.30.0-10 pinentry-curses_1.1.0-4 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-plink2-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 util-linux_2.35.1-5 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri May 29 10:25:47 2020 UTC
gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./plink2_2.00~a3-200511+dfsg-1.dsc
dpkg-source: info: extracting plink2 in /<<BUILDDIR>>/plink2-2.00~a3-200511+dfsg
dpkg-source: info: unpacking plink2_2.00~a3-200511+dfsg.orig.tar.xz
dpkg-source: info: unpacking plink2_2.00~a3-200511+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying Fix_Makefile.patch
dpkg-source: info: applying simde
dpkg-source: info: applying use_packaged_libdeflate
dpkg-source: info: applying crossbuild
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-d320dd5e-a40b-4634-8500-fa42e084f88f
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package plink2
dpkg-buildpackage: info: source version 2.00~a3-200511+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --sourcedirectory=build_dynamic/
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/plink2-2.00~a3-200511+dfsg'
dh_auto_clean
cd build_dynamic && make -j4 clean
make[2]: Entering directory '/<<BUILDDIR>>/plink2-2.00~a3-200511+dfsg/build_dynamic'
rm -f *.o
rm -f plink2
rm -f pgen_compress
make[2]: Leaving directory '/<<BUILDDIR>>/plink2-2.00~a3-200511+dfsg/build_dynamic'
rm -f plink2.1
rm -f pgen_compress.1
make[1]: Leaving directory '/<<BUILDDIR>>/plink2-2.00~a3-200511+dfsg'
dh_autoreconf_clean -O--sourcedirectory=build_dynamic/
dh_clean -O--sourcedirectory=build_dynamic/
debian/rules binary-arch
dh binary-arch --sourcedirectory=build_dynamic/
dh_update_autotools_config -a -O--sourcedirectory=build_dynamic/
dh_autoreconf -a -O--sourcedirectory=build_dynamic/
dh_auto_configure -a -O--sourcedirectory=build_dynamic/
debian/rules override_dh_auto_build-arch
make[1]: Entering directory '/<<BUILDDIR>>/plink2-2.00~a3-200511+dfsg'
dh_auto_build
cd build_dynamic && make -j4 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<BUILDDIR>>/plink2-2.00~a3-200511+dfsg/build_dynamic'
cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/plink2-2.00~a3-200511+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -O2 -std=gnu99 -DZSTD_MULTITHREAD -Wall -Wextra -Wshadow -Wformat-security ../include/SFMT.c -c
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/plink2-2.00~a3-200511+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++11 -O2 -DZSTD_MULTITHREAD -Wall -Wextra -Wshadow -Wformat-security -Wold-style-cast -Wl,-z,relro -Wl,-z,now -ldeflate ../include/plink2_base.cc ../include/plink2_bits.cc ../include/pgenlib_misc.cc ../include/pgenlib_read.cc ../include/pgenlib_write.cc ../pgen_compress.cc -o pgen_compress""
echo cc -O2 -std=gnu99 -DZSTD_MULTITHREAD -Wall -Wextra -Wshadow -Wformat-security -I../zstd/lib -I../zstd/lib/common -c
cc -O2 -std=gnu99 -DZSTD_MULTITHREAD -Wall -Wextra -Wshadow -Wformat-security -I../zstd/lib -I../zstd/lib/common -c
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/plink2-2.00~a3-200511+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++11 -O2 -DZSTD_MULTITHREAD -Wall -Wextra -Wshadow -Wformat-security -Wold-style-cast ../include/plink2_base.cc ../include/plink2_bits.cc ../include/pgenlib_misc.cc ../include/pgenlib_read.cc ../include/pgenlib_write.cc ../include/plink2_bgzf.cc ../include/plink2_stats.cc ../include/plink2_string.cc ../include/plink2_text.cc ../include/plink2_thread.cc ../include/plink2_zstfile.cc ../plink2.cc ../plink2_adjust.cc ../plink2_cmdline.cc ../plink2_common.cc ../plink2_compress_stream.cc ../plink2_data.cc ../plink2_decompress.cc ../plink2_export.cc ../plink2_fasta.cc ../plink2_filter.cc ../plink2_glm.cc ../plink2_help.cc ../plink2_import.cc ../plink2_ld.cc ../plink2_matrix.cc ../plink2_matrix_calc.cc ../plink2_misc.cc ../plink2_psam.cc ../plink2_pvar.cc ../plink2_random.cc ../plink2_set.cc -c
../include/plink2_bits.cc:1020:6: error: #error "Unaligned accesses in ExpandBytearr()."
1020 | # error "Unaligned accesses in ExpandBytearr()."
| ^~~~~
../include/plink2_bits.cc:1065:6: error: #error "Unaligned accesses in ExpandThenSubsetBytearr()."
1065 | # error "Unaligned accesses in ExpandThenSubsetBytearr()."
| ^~~~~
../include/plink2_bits.cc:1132:4: error: #error "Unaligned accesses in ExpandBytearrNested()."
1132 | # error "Unaligned accesses in ExpandBytearrNested()."
| ^~~~~
../include/plink2_bits.cc:1198:4: error: #error "Unaligned accesses in ExpandThenSubsetBytearrNested()."
1198 | # error "Unaligned accesses in ExpandThenSubsetBytearrNested()."
| ^~~~~
../include/plink2_bits.cc:2255:6: error: #error "Unaligned accesses in BytesumArr()."
2255 | # error "Unaligned accesses in BytesumArr()."
| ^~~~~
../include/plink2_bits.cc:1020:6: error: #error "Unaligned accesses in ExpandBytearr()."
1020 | # error "Unaligned accesses in ExpandBytearr()."
| ^~~~~
../include/plink2_bits.cc:1065:6: error: #error "Unaligned accesses in ExpandThenSubsetBytearr()."
1065 | # error "Unaligned accesses in ExpandThenSubsetBytearr()."
| ^~~~~
../include/plink2_bits.cc:1132:4: error: #error "Unaligned accesses in ExpandBytearrNested()."
1132 | # error "Unaligned accesses in ExpandBytearrNested()."
| ^~~~~
../include/plink2_bits.cc:1198:4: error: #error "Unaligned accesses in ExpandThenSubsetBytearrNested()."
1198 | # error "Unaligned accesses in ExpandThenSubsetBytearrNested()."
| ^~~~~
../include/plink2_bits.cc:2255:6: error: #error "Unaligned accesses in BytesumArr()."
2255 | # error "Unaligned accesses in BytesumArr()."
| ^~~~~
../include/pgenlib_misc.cc:339:4: error: #error "Unaligned accesses in ExpandBytearrFromGenoarr()."
339 | # error "Unaligned accesses in ExpandBytearrFromGenoarr()."
| ^~~~~
../include/pgenlib_misc.cc:339:4: error: #error "Unaligned accesses in ExpandBytearrFromGenoarr()."
339 | # error "Unaligned accesses in ExpandBytearrFromGenoarr()."
| ^~~~~
../include/pgenlib_read.cc:43:4: error: #error "Unaligned accesses in SmallGenoarrCount3FreqIncr()."
43 | # error "Unaligned accesses in SmallGenoarrCount3FreqIncr()."
| ^~~~~
../include/pgenlib_read.cc:107:4: error: #error "Unaligned accesses in GenoarrbCountSubsetFreqs()."
107 | # error "Unaligned accesses in GenoarrbCountSubsetFreqs()."
| ^~~~~
../include/pgenlib_read.cc:1190:4: error: #error "Unaligned accesses in PgfiInitPhase2()."
1190 | # error "Unaligned accesses in PgfiInitPhase2()."
| ^~~~~
../include/pgenlib_read.cc:2275:6: error: #error "Unaligned accesses in ParseOnebitUnsafe()."
2275 | # error "Unaligned accesses in ParseOnebitUnsafe()."
| ^~~~~
../include/pgenlib_read.cc:2994:4: error: #error "Unaligned accesses in SkipDeltalistIds()."
2994 | # error "Unaligned accesses in SkipDeltalistIds()."
| ^~~~~
../include/pgenlib_read.cc:3118:4: error: #error "Unaligned accesses in CountparseOnebitSubset()."
3118 | # error "Unaligned accesses in CountparseOnebitSubset()."
| ^~~~~
../include/pgenlib_read.cc:3815:4: error: #error "Unaligned accesses in CountAux1a()."
3815 | # error "Unaligned accesses in CountAux1a()."
| ^~~~~
../include/pgenlib_read.cc:4077:4: error: #error "Unaligned accesses in CountAux1b()."
4077 | # error "Unaligned accesses in CountAux1b()."
| ^~~~~
../include/pgenlib_read.cc:4403:4: error: #error "Unaligned accesses in GenoarrAux1aUpdate()."
4403 | # error "Unaligned accesses in GenoarrAux1aUpdate()."
| ^~~~~
../include/pgenlib_read.cc:4629:4: error: #error "Unaligned accesses in GenoarrAux1bStandardUpdate()."
4629 | # error "Unaligned accesses in GenoarrAux1bStandardUpdate()."
| ^~~~~
../include/pgenlib_read.cc:4952:4: error: #error "Unaligned accesses in GetAux1bHets()."
4952 | # error "Unaligned accesses in GetAux1bHets()."
| ^~~~~
../include/pgenlib_read.cc:5290:4: error: #error "Unaligned accesses in GenoarrAux1bUpdate2()."
5290 | # error "Unaligned accesses in GenoarrAux1bUpdate2()."
| ^~~~~
../include/pgenlib_read.cc:5802:4: error: #error "Unaligned accesses in Expand2bitTo8()."
5802 | # error "Unaligned accesses in Expand2bitTo8()."
| ^~~~~
../include/pgenlib_read.cc:6059:4: error: #error "Unaligned accesses in ExportAux1aProperSubset()."
6059 | # error "Unaligned accesses in ExportAux1aProperSubset()."
| ^~~~~
../include/pgenlib_read.cc:6269:4: error: #error "Unaligned accesses in ExportAux1bProperSubset()."
6269 | # error "Unaligned accesses in ExportAux1bProperSubset()."
| ^~~~~
../include/pgenlib_read.cc:7086:4: error: #error "Unaligned accesses in ParseDosage16()."
7086 | # error "Unaligned accesses in ParseDosage16()."
| ^~~~~
../include/pgenlib_read.cc:7399:4: error: #error "Unaligned accesses in GetAux1bHetIncr()."
7399 | # error "Unaligned accesses in GetAux1bHetIncr()."
| ^~~~~
../include/pgenlib_read.cc:7712:4: error: #error "Unaligned accesses in GetBasicGenotypeCountsAndDosage16s()."
7712 | # error "Unaligned accesses in GetBasicGenotypeCountsAndDosage16s()."
| ^~~~~
../include/pgenlib_read.cc:8225:4: error: #error "Unaligned accesses in CountAllAux1a()."
8225 | # error "Unaligned accesses in CountAllAux1a()."
| ^~~~~
../include/pgenlib_read.cc:8448:4: error: #error "Unaligned accesses in CountAllAux1b()."
8448 | # error "Unaligned accesses in CountAllAux1b()."
| ^~~~~
../include/pgenlib_read.cc:9254:4: error: #error "Unaligned accesses in PgrGetMissingnessPD()."
9254 | # error "Unaligned accesses in PgrGetMissingnessPD()."
| ^~~~~
../include/pgenlib_read.cc:9502:4: error: #error "Unaligned accesses in ValidateOnebit()."
9502 | # error "Unaligned accesses in ValidateOnebit()."
| ^~~~~
../include/pgenlib_read.cc:10003:4: error: #error "Unaligned accesses in ValidateDosage16()."
10003 | # error "Unaligned accesses in ValidateDosage16()."
| ^~~~~
../include/pgenlib_read.cc:43:4: error: #error "Unaligned accesses in SmallGenoarrCount3FreqIncr()."
43 | # error "Unaligned accesses in SmallGenoarrCount3FreqIncr()."
| ^~~~~
../include/pgenlib_read.cc:107:4: error: #error "Unaligned accesses in GenoarrbCountSubsetFreqs()."
107 | # error "Unaligned accesses in GenoarrbCountSubsetFreqs()."
| ^~~~~
../include/pgenlib_read.cc:1190:4: error: #error "Unaligned accesses in PgfiInitPhase2()."
1190 | # error "Unaligned accesses in PgfiInitPhase2()."
| ^~~~~
../include/pgenlib_read.cc:2275:6: error: #error "Unaligned accesses in ParseOnebitUnsafe()."
2275 | # error "Unaligned accesses in ParseOnebitUnsafe()."
| ^~~~~
../include/pgenlib_read.cc:2994:4: error: #error "Unaligned accesses in SkipDeltalistIds()."
2994 | # error "Unaligned accesses in SkipDeltalistIds()."
| ^~~~~
../include/pgenlib_read.cc:3118:4: error: #error "Unaligned accesses in CountparseOnebitSubset()."
3118 | # error "Unaligned accesses in CountparseOnebitSubset()."
| ^~~~~
../include/pgenlib_read.cc:3815:4: error: #error "Unaligned accesses in CountAux1a()."
3815 | # error "Unaligned accesses in CountAux1a()."
| ^~~~~
../include/pgenlib_read.cc:4077:4: error: #error "Unaligned accesses in CountAux1b()."
4077 | # error "Unaligned accesses in CountAux1b()."
| ^~~~~
../include/pgenlib_read.cc:4403:4: error: #error "Unaligned accesses in GenoarrAux1aUpdate()."
4403 | # error "Unaligned accesses in GenoarrAux1aUpdate()."
| ^~~~~
../include/pgenlib_read.cc:4629:4: error: #error "Unaligned accesses in GenoarrAux1bStandardUpdate()."
4629 | # error "Unaligned accesses in GenoarrAux1bStandardUpdate()."
| ^~~~~
../include/pgenlib_read.cc:4952:4: error: #error "Unaligned accesses in GetAux1bHets()."
4952 | # error "Unaligned accesses in GetAux1bHets()."
| ^~~~~
../include/pgenlib_read.cc:5290:4: error: #error "Unaligned accesses in GenoarrAux1bUpdate2()."
5290 | # error "Unaligned accesses in GenoarrAux1bUpdate2()."
| ^~~~~
../include/pgenlib_read.cc:5802:4: error: #error "Unaligned accesses in Expand2bitTo8()."
5802 | # error "Unaligned accesses in Expand2bitTo8()."
| ^~~~~
../include/pgenlib_read.cc:6059:4: error: #error "Unaligned accesses in ExportAux1aProperSubset()."
6059 | # error "Unaligned accesses in ExportAux1aProperSubset()."
| ^~~~~
../include/pgenlib_read.cc:6269:4: error: #error "Unaligned accesses in ExportAux1bProperSubset()."
6269 | # error "Unaligned accesses in ExportAux1bProperSubset()."
| ^~~~~
../include/pgenlib_read.cc:7086:4: error: #error "Unaligned accesses in ParseDosage16()."
7086 | # error "Unaligned accesses in ParseDosage16()."
| ^~~~~
../include/pgenlib_read.cc:7399:4: error: #error "Unaligned accesses in GetAux1bHetIncr()."
7399 | # error "Unaligned accesses in GetAux1bHetIncr()."
| ^~~~~
../include/pgenlib_read.cc:7712:4: error: #error "Unaligned accesses in GetBasicGenotypeCountsAndDosage16s()."
7712 | # error "Unaligned accesses in GetBasicGenotypeCountsAndDosage16s()."
| ^~~~~
../include/pgenlib_read.cc:8225:4: error: #error "Unaligned accesses in CountAllAux1a()."
8225 | # error "Unaligned accesses in CountAllAux1a()."
| ^~~~~
../include/pgenlib_read.cc:8448:4: error: #error "Unaligned accesses in CountAllAux1b()."
8448 | # error "Unaligned accesses in CountAllAux1b()."
| ^~~~~
../include/pgenlib_read.cc:9254:4: error: #error "Unaligned accesses in PgrGetMissingnessPD()."
9254 | # error "Unaligned accesses in PgrGetMissingnessPD()."
| ^~~~~
../include/pgenlib_read.cc:9502:4: error: #error "Unaligned accesses in ValidateOnebit()."
9502 | # error "Unaligned accesses in ValidateOnebit()."
| ^~~~~
../include/pgenlib_read.cc:10003:4: error: #error "Unaligned accesses in ValidateDosage16()."
10003 | # error "Unaligned accesses in ValidateDosage16()."
| ^~~~~
../include/pgenlib_write.cc:606:4: error: #error "Unaligned accesses in SaveLdDifflist()."
606 | # error "Unaligned accesses in SaveLdDifflist()."
| ^~~~~
../include/pgenlib_write.cc:746:4: error: #error "Unaligned accesses in SaveOnebit()."
746 | # error "Unaligned accesses in SaveOnebit()."
| ^~~~~
../include/pgenlib_write.cc:975:4: error: #error "Unaligned accesses in SaveLdTwoListDelta()."
975 | # error "Unaligned accesses in SaveLdTwoListDelta()."
| ^~~~~
../include/pgenlib_write.cc:1315:4: error: #error "Unaligned accesses in PwcAppendMultiallelicMain()."
1315 | # error "Unaligned accesses in PwcAppendMultiallelicMain()."
| ^~~~~
../include/pgenlib_write.cc:1952:4: error: #error "Unaligned accesses in AppendHphase()."
1952 | # error "Unaligned accesses in AppendHphase()."
| ^~~~~
../include/pgenlib_write.cc:606:4: error: #error "Unaligned accesses in SaveLdDifflist()."
606 | # error "Unaligned accesses in SaveLdDifflist()."
| ^~~~~
../include/pgenlib_write.cc:746:4: error: #error "Unaligned accesses in SaveOnebit()."
746 | # error "Unaligned accesses in SaveOnebit()."
| ^~~~~
../include/pgenlib_write.cc:975:4: error: #error "Unaligned accesses in SaveLdTwoListDelta()."
975 | # error "Unaligned accesses in SaveLdTwoListDelta()."
| ^~~~~
../include/pgenlib_write.cc:1315:4: error: #error "Unaligned accesses in PwcAppendMultiallelicMain()."
1315 | # error "Unaligned accesses in PwcAppendMultiallelicMain()."
| ^~~~~
../include/pgenlib_write.cc:1952:4: error: #error "Unaligned accesses in AppendHphase()."
1952 | # error "Unaligned accesses in AppendHphase()."
| ^~~~~
In file included from ../include/plink2_bgzf.h:36,
from ../include/plink2_bgzf.cc:18:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
../include/plink2_bgzf.cc:148:6: error: #error "Unaligned accesses in BgzfReadJoinAndRespawn()."
148 | # error "Unaligned accesses in BgzfReadJoinAndRespawn()."
| ^~~~~
make[2]: *** [Makefile:160: pgen_compress""] Error 1
make[2]: *** Waiting for unfinished jobs....
In file included from ../include/plink2_stats.h:20,
from ../include/plink2_stats.cc:17:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
In file included from ../include/plink2_string.cc:18:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
In file included from ../include/plink2_bgzf.h:36,
from ../include/plink2_text.h:111,
from ../include/plink2_text.cc:18:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
../include/plink2_text.cc:535:6: error: #error "Unaligned accesses in TextFileAdvance()."
535 | # error "Unaligned accesses in TextFileAdvance()."
| ^~~~~
In file included from ../plink2_cmdline.h:26,
from ../plink2_compress_stream.h:27,
from ../plink2.cc:19:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
In file included from ../include/plink2_stats.h:20,
from ../plink2_adjust.cc:17:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
In file included from ../plink2_cmdline.h:26,
from ../plink2_cmdline.cc:18:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
In file included from ../include/plink2_bgzf.h:36,
from ../include/plink2_text.h:111,
from ../plink2_decompress.h:23,
from ../plink2_common.h:27,
from ../plink2_common.cc:18:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
In file included from ../plink2_cmdline.h:26,
from ../plink2_compress_stream.h:27,
from ../plink2_compress_stream.cc:18:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
In file included from ../plink2_cmdline.h:26,
from ../plink2_compress_stream.h:27,
from ../plink2_data.cc:19:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
../plink2_data.cc:1202:4: error: #error "Unaligned accesses in GenovecResort()."
1202 | # error "Unaligned accesses in GenovecResort()."
| ^~~~~
In file included from ../include/plink2_bgzf.h:36,
from ../include/plink2_text.h:111,
from ../plink2_decompress.h:23,
from ../plink2_decompress.cc:17:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
In file included from ../plink2_cmdline.h:26,
from ../plink2_compress_stream.h:27,
from ../plink2_export.cc:17:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
../plink2_export.cc:204:4: error: #error "Unaligned accesses in Export012Vmaj()."
204 | # error "Unaligned accesses in Export012Vmaj()."
| ^~~~~
../plink2_export.cc:1211:4: error: #error "Unaligned accesses in ExportOxHapslegend()."
1211 | # error "Unaligned accesses in ExportOxHapslegend()."
| ^~~~~
../plink2_export.cc:4173:4: error: #error "Unaligned accesses in ExportVcf()."
4173 | # error "Unaligned accesses in ExportVcf()."
| ^~~~~
../plink2_export.cc:6146:4: error: #error "Unaligned accesses in FixBcfFemaleYGtPloidy2()."
6146 | # error "Unaligned accesses in FixBcfFemaleYGtPloidy2()."
| ^~~~~
../plink2_export.cc:6185:4: error: #error "Unaligned accesses in FillBcfDsPloidy1()."
6185 | # error "Unaligned accesses in FillBcfDsPloidy1()."
| ^~~~~
../plink2_export.cc:6227:4: error: #error "Unaligned accesses in FillBcfDs()."
6227 | # error "Unaligned accesses in FillBcfDs()."
| ^~~~~
../plink2_export.cc:6316:4: error: #error "Unaligned accesses in FixBcfMaleXHdsPloidy()."
6316 | # error "Unaligned accesses in FixBcfMaleXHdsPloidy()."
| ^~~~~
../plink2_export.cc:6355:4: error: #error "Unaligned accesses in FixBcfFemaleYHdsPloidy2()."
6355 | # error "Unaligned accesses in FixBcfFemaleYHdsPloidy2()."
| ^~~~~
../plink2_export.cc:6397:4: error: #error "Unaligned accesses in FixBcfFemaleY64allelicGtPloidy2()."
6397 | # error "Unaligned accesses in FixBcfFemaleY64allelicGtPloidy2()."
| ^~~~~
../plink2_export.cc:6419:4: error: #error "Unaligned accesses in FixBcfFemaleY64allelicGtPloidy1()."
6419 | # error "Unaligned accesses in FixBcfFemaleY64allelicGtPloidy1()."
| ^~~~~
../plink2_export.cc:6441:4: error: #error "Unaligned accesses in FillBcfHdsPloidy1()."
6441 | # error "Unaligned accesses in FillBcfHdsPloidy1()."
| ^~~~~
../plink2_export.cc:6479:4: error: #error "Unaligned accesses in FillBcfGpPloidy2()."
6479 | # error "Unaligned accesses in FillBcfGpPloidy2()."
| ^~~~~
../plink2_export.cc:6558:4: error: #error "Unaligned accesses in FillBcfGpPloidy1()."
6558 | # error "Unaligned accesses in FillBcfGpPloidy1()."
| ^~~~~
../plink2_export.cc:6617:4: error: #error "Unaligned accesses in FixBcfMaleX64allelicGtPloidy()."
6617 | # error "Unaligned accesses in FixBcfMaleX64allelicGtPloidy()."
| ^~~~~
../plink2_export.cc:6656:4: error: #error "Unaligned accesses in FillBcf3allelicGtPloidy2()."
6656 | # error "Unaligned accesses in FillBcf3allelicGtPloidy2()."
| ^~~~~
../plink2_export.cc:6715:4: error: #error "Unaligned accesses in FillBcf64allelicGtPloidy2()."
6715 | # error "Unaligned accesses in FillBcf64allelicGtPloidy2()."
| ^~~~~
../plink2_export.cc:6749:4: error: #error "Unaligned accesses in FillBcf64allelicGtPloidy1()."
6749 | # error "Unaligned accesses in FillBcf64allelicGtPloidy1()."
| ^~~~~
../plink2_export.cc:6770:4: error: #error "Unaligned accesses in FixBcf64allelicGtHh()."
6770 | # error "Unaligned accesses in FixBcf64allelicGtHh()."
| ^~~~~
../plink2_export.cc:6964:4: error: #error "Unaligned accesses in FillBcf3allelicPhasedGt()."
6964 | # error "Unaligned accesses in FillBcf3allelicPhasedGt()."
| ^~~~~
../plink2_export.cc:7047:4: error: #error "Unaligned accesses in FillBcf64allelicPhasedGt()."
7047 | # error "Unaligned accesses in FillBcf64allelicPhasedGt()."
| ^~~~~
../plink2_export.cc:8482:4: error: #error "Unaligned accesses in ExportBcf()."
8482 | # error "Unaligned accesses in ExportBcf()."
| ^~~~~
In file included from ../include/plink2_bgzf.h:36,
from ../include/plink2_text.h:111,
from ../plink2_decompress.h:23,
from ../plink2_common.h:27,
from ../plink2_fasta.h:21,
from ../plink2_fasta.cc:18:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
In file included from ../include/plink2_stats.h:20,
from ../plink2_filter.cc:18:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
In file included from ../include/plink2_stats.h:20,
from ../plink2_glm.cc:17:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
In file included from ../plink2_cmdline.h:26,
from ../plink2_help.h:21,
from ../plink2_help.cc:20:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
In file included from ../plink2_cmdline.h:26,
from ../plink2_compress_stream.h:27,
from ../plink2_import.cc:19:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
../plink2_import.cc:7829:4: error: #error "Unaligned accesses in BcfToPgen()."
7829 | # error "Unaligned accesses in BcfToPgen()."
| ^~~~~
../plink2_import.cc:10342:4: error: #error "Unaligned accesses in Bgen13GetOneVal()."
10342 | # error "Unaligned accesses in Bgen13GetOneVal()."
| ^~~~~
../plink2_import.cc:10353:4: error: #error "Unaligned accesses in Bgen13GetTwoVals()."
10353 | # error "Unaligned accesses in Bgen13GetTwoVals()."
| ^~~~~
../plink2_import.cc:13610:4: error: #error "Unaligned accesses in OxHapslegendToPgen()."
13610 | # error "Unaligned accesses in OxHapslegendToPgen()."
| ^~~~~
In file included from ../include/plink2_stats.h:20,
from ../plink2_ld.cc:18:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
In file included from ../plink2_cmdline.h:26,
from ../plink2_matrix.h:29,
from ../plink2_matrix.cc:18:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
In file included from ../plink2_cmdline.h:26,
from ../plink2_compress_stream.h:27,
from ../plink2_matrix_calc.cc:18:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
../plink2_matrix_calc.cc:1819:4: error: #error "Unaligned accesses in CalcKing()."
1819 | # error "Unaligned accesses in CalcKing()."
| ^~~~~
../plink2_matrix_calc.cc:4306:4: error: #error "Unaligned accesses in CalcGrm()."
4306 | # error "Unaligned accesses in CalcGrm()."
| ^~~~~
In file included from ../include/plink2_stats.h:20,
from ../plink2_misc.cc:18:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
In file included from ../include/plink2_bgzf.h:36,
from ../include/plink2_text.h:111,
from ../plink2_decompress.h:23,
from ../plink2_common.h:27,
from ../plink2_psam.h:21,
from ../plink2_psam.cc:17:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
In file included from ../include/plink2_bgzf.h:36,
from ../include/plink2_text.h:111,
from ../plink2_decompress.h:23,
from ../plink2_common.h:27,
from ../plink2_pvar.h:20,
from ../plink2_pvar.cc:17:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
In file included from ../plink2_cmdline.h:26,
from ../plink2_random.h:21,
from ../plink2_random.cc:18:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
In file included from ../include/plink2_bgzf.h:36,
from ../include/plink2_text.h:111,
from ../plink2_decompress.h:23,
from ../plink2_common.h:27,
from ../plink2_set.h:21,
from ../plink2_set.cc:18:
../include/plink2_string.h:1517:4: error: #error "Unaligned accesses in IsNanStr()."
1517 | # error "Unaligned accesses in IsNanStr()."
| ^~~~~
make[2]: *** [Makefile:155: plink2""] Error 1
make[2]: Leaving directory '/<<BUILDDIR>>/plink2-2.00~a3-200511+dfsg/build_dynamic'
dh_auto_build: error: cd build_dynamic && make -j4 "INSTALL=install --strip-program=true" returned exit code 2
make[1]: *** [debian/rules:66: override_dh_auto_build-arch] Error 25
make[1]: Leaving directory '/<<BUILDDIR>>/plink2-2.00~a3-200511+dfsg'
make: *** [debian/rules:15: binary-arch] Error 2
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2020-06-05T02:06:56Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 0
Build-Time: 131
Distribution: bullseye-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 403
Job: plink2_2.00~a3-200511+dfsg-1
Machine Architecture: armhf
Package: plink2
Package-Time: 590
Source-Version: 2.00~a3-200511+dfsg-1
Space: 0
Status: failed
Version: 2.00~a3-200511+dfsg-1
--------------------------------------------------------------------------------
Finished at 2020-06-05T02:06:56Z
Build needed 00:00:00, 0k disc space