plink1.9 →
1.90~b7.2-231211-1 →
armhf → 2024-01-14 12:38:36
sbuild (Debian sbuild) 0.85.0 (04 January 2023) on test2023
+==============================================================================+
| plink1.9 1.90~b7.2-231211-1 (armhf) Sun, 14 Jan 2024 12:36:58 +0000 |
+==============================================================================+
Package: plink1.9
Version: 1.90~b7.2-231211-1
Source Version: 1.90~b7.2-231211-1
Distribution: trixie-staging
Machine Architecture: arm64
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-7c5700e4-f3bf-4959-a777-dc8822737f55' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/plink1.9-ILexFx/resolver-MG29Q0' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.4 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.0 MB]
Fetched 29.4 MB in 5s (5602 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'plink1.9' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/plink1-9.git
Please use:
git clone https://salsa.debian.org/med-team/plink1-9.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 787 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main plink1.9 1.90~b7.2-231211-1 (dsc) [2180 B]
Get:2 http://172.17.4.1/private trixie-staging/main plink1.9 1.90~b7.2-231211-1 (tar) [737 kB]
Get:3 http://172.17.4.1/private trixie-staging/main plink1.9 1.90~b7.2-231211-1 (diff) [47.2 kB]
Fetched 787 kB in 0s (4961 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/plink1.9-ILexFx/plink1.9-1.90~b7.2-231211' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/plink1.9-ILexFx' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libblas-dev | libblas.so, liblapack-dev | liblapack.so, zlib1g-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), libblas-dev, liblapack-dev, zlib1g-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [685 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [689 B]
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Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cpp-13 debhelper
dh-autoreconf dh-strip-nondeterminism dwz file g++-13 gcc-13 gcc-13-base
gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8
libatomic1 libblas-dev libblas3 libcc1-0 libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libgcc-13-dev libgcc-s1 libgfortran5
libgomp1 libicu72 liblapack-dev liblapack3 libmagic-mgc libmagic1
libpipeline1 libstdc++-13-dev libstdc++6 libsub-override-perl libtool
libubsan1 libuchardet0 libxml2 m4 man-db po-debconf sensible-utils zlib1g
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc gcc-13-locales cpp-13-doc
dh-make gcc-13-doc gettext-doc libasprintf-dev libgettextpo-dev groff
liblapack-doc libstdc++-13-doc libtool-doc gfortran | fortran95-compiler
gcj-jdk m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libblas-dev libblas3
libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libgfortran5
libicu72 liblapack-dev liblapack3 libmagic-mgc libmagic1 libpipeline1
libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf
sbuild-build-depends-main-dummy sensible-utils zlib1g-dev
The following packages will be upgraded:
cpp-13 g++-13 gcc-13 gcc-13-base libasan8 libatomic1 libcc1-0 libgcc-13-dev
libgcc-s1 libgomp1 libstdc++-13-dev libstdc++6 libubsan1 zlib1g
14 upgraded, 37 newly installed, 0 to remove and 21 not upgraded.
Need to get 61.5 MB of archives.
After this operation, 96.4 MB of additional disk space will be used.
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Get:18 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.3-2 [81.2 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-1 [1358 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf sensible-utils all 0.0.20 [19.3 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
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Get:24 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-14 [157 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-14 [496 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.9 [82.3 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.10-1 [10.6 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:38 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-14 [1203 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.9 [956 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 13.2.0-9+rpi1 [247 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.3.dfsg-3 [903 kB]
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Setting up autotools-dev (20220109.1) ...
Setting up libblas3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up autopoint (0.21-14) ...
Setting up libgfortran5:armhf (13.2.0-9+rpi1) ...
Setting up autoconf (2.71-3) ...
Setting up libubsan1:armhf (13.2.0-9+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.3.dfsg-3) ...
Setting up sensible-utils (0.0.20) ...
Setting up libasan8:armhf (13.2.0-9+rpi1) ...
Setting up libuchardet0:armhf (0.0.8-1) ...
Setting up libsub-override-perl (0.10-1) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up libcc1-0:armhf (13.2.0-9+rpi1) ...
Setting up libblas-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up liblapack3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up gettext (0.21-14) ...
Setting up libtool (2.4.7-7) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up liblapack-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up libgcc-13-dev:armhf (13.2.0-9+rpi1) ...
Setting up groff-base (1.23.0-3) ...
Setting up libstdc++-13-dev:armhf (13.2.0-9+rpi1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.12.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gcc-13 (13.2.0-9+rpi1) ...
Setting up g++-13 (13.2.0-9+rpi1) ...
Setting up debhelper (13.11.9) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.37-12+rpi2) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any-amd64 any-i386 armel armhf mipsel)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.47-v8+ #1 SMP PREEMPT Fri Sep 1 07:05:33 BST 2023 arm64 (aarch64)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.1+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-9+rpi1 gcc-12_12.3.0-13+rpi1 gcc-13_13.2.0-9+rpi1 libc6-dev_2.37-12+rpi2 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-9+rpi1 libstdc++6_13.2.0-9+rpi1 linux-libc-dev_6.5.6-1+rpi1
Package versions: adduser_3.137 apt_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.3-2 bsdutils_1:2.39.3-2 build-essential_12.10 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-13+rpi1 cpp-13_13.2.0-9+rpi1 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.9 debianutils_5.14 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dpkg_1.22.1+rpi1 dpkg-dev_1.22.1+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-9+rpi1 gcc_4:13.2.0-1+rpi1 gcc-10-base_10.4.0-7+rpi1 gcc-12_12.3.0-13+rpi1 gcc-12-base_12.3.0-13+rpi1 gcc-13_13.2.0-9+rpi1 gcc-13-base_13.2.0-9+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-14 gettext-base_0.21-14 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libapt-pkg6.0_2.7.6 libarchive-zip-perl_1.68-1 libasan8_13.2.0-9+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-9+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libbinutils_2.41-6+rpi1 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.39.3-2 libbz2-1.0_1.0.8-5+b2 libc-bin_2.37-12+rpi2 libc-dev-bin_2.37-12+rpi2 libc6_2.37-12+rpi2 libc6-dev_2.37-12+rpi2 libcap-ng0_0.8.3-3 libcap2_1:2.66-4 libcc1-0_13.2.0-9+rpi1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41-6+rpi1 libctf0_2.41-6+rpi1 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271 libdebhelper-perl_13.11.9 libdpkg-perl_1.22.1+rpi1 libelf1_0.188-2.1+rpi1 libext2fs2_1.47.0-2 libfakeroot_1.32.2-1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.3.0-13+rpi1 libgcc-13-dev_13.2.0-9+rpi1 libgcc-s1_13.2.0-9+rpi1 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgfortran5_13.2.0-9+rpi1 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.2-1 libgomp1_13.2.0-9+rpi1 libgpg-error0_1.47-3 libgssapi-krb5-2_1.20.1-5 libhogweed6_3.9.1-2 libicu72_72.1-4 libidn2-0_2.3.4-1 libisl23_0.26-3 libjansson4_2.14-2 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 libksba8_1.6.5-2 liblapack-dev_3.11.0-2 liblapack3_3.11.0-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1 liblocale-gettext-perl_1.07-6 liblz4-1_1.9.4-1+rpi1+b1 liblzma5_5.4.5-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmount1_2.39.3-2 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncursesw6_6.4+20231209-1 libnettle8_3.9.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-2 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpcre2-8-0_10.42-4 libperl5.36_5.36.0-10 libpipeline1_1.5.7-1 libreadline8_8.2-3 libsasl2-2_2.1.28+dfsg1-4 libsasl2-modules-db_2.1.28+dfsg1-4 libseccomp2_2.5.4-2+rpi1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol2_3.5-2 libsframe1_2.41-6+rpi1 libsmartcols1_2.39.3-2 libsqlite3-0_3.44.2-1 libss2_1.47.0-2 libssl3_3.1.4-2 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-9+rpi1 libstdc++6_13.2.0-9+rpi1 libsub-override-perl_0.10-1 libsystemd0_254.5-1+rpi1 libtasn1-6_4.19.0-3 libtext-charwidth-perl_0.04-11 libtext-glob-perl_0.11-3 libtext-iconv-perl_1.7-8 libtinfo6_6.4+20231209-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libubsan1_13.2.0-9+rpi1 libuchardet0_0.0.8-1 libudev1_254.5-1+rpi1 libunistring5_1.1-2 libuuid1_2.39.3-2 libxml2_2.9.14+dfsg-1.3 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.6-1+rpi1 login_1:4.13+dfsg1-3 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-1 mawk_1.3.4.20231126-1 mount_2.39.3-2 nano_7.2-1 ncurses-base_6.4+20231209-1 ncurses-bin_6.4+20231209-1 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.36.0-10 perl-base_5.36.0-10 perl-modules-5.36_5.36.0-10 pinentry-curses_1.2.1-3 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.2-3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.08-5 tar_1.34+dfsg-1.3 tzdata_2023c-11 usr-is-merged_38 usrmerge_38 util-linux_2.39.3-2 xz-utils_5.4.5-0.1 zlib1g_1:1.3.dfsg-3 zlib1g-dev_1:1.3.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: plink1.9
Binary: plink1.9
Architecture: any-amd64 any-i386 armel armhf mipsel
Version: 1.90~b7.2-231211-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Dylan Aïssi <daissi@debian.org>
Homepage: https://www.cog-genomics.org/plink/1.9/
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/plink1-9
Vcs-Git: https://salsa.debian.org/med-team/plink1-9.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), libblas-dev | libblas.so, liblapack-dev | liblapack.so, zlib1g-dev
Package-List:
plink1.9 deb science optional arch=any-amd64,any-i386,armel,armhf,mipsel
Checksums-Sha1:
8ea5eb08b1a612fdbcdc2deb0371aa9082818b77 737164 plink1.9_1.90~b7.2-231211.orig.tar.xz
57e58e331a4f8ee59347bb2b4d1790f8b893e017 47240 plink1.9_1.90~b7.2-231211-1.debian.tar.xz
Checksums-Sha256:
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1ef0273f406f9e954c500ae8ce82831d2daf8a0ea268b98a61e70a5ac75fb62d 47240 plink1.9_1.90~b7.2-231211-1.debian.tar.xz
Files:
ab04af5cce2b27acc1efb29a37e43906 737164 plink1.9_1.90~b7.2-231211.orig.tar.xz
72e3bf452eb669148581fb81991bc93c 47240 plink1.9_1.90~b7.2-231211-1.debian.tar.xz
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gpgv: Signature made Thu Jan 11 16:03:47 2024 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./plink1.9_1.90~b7.2-231211-1.dsc: no acceptable signature found
dpkg-source: info: extracting plink1.9 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking plink1.9_1.90~b7.2-231211.orig.tar.xz
dpkg-source: info: unpacking plink1.9_1.90~b7.2-231211-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_makefile.patch
dpkg-source: info: applying blas.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=124
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-7c5700e4-f3bf-4959-a777-dc8822737f55
SCHROOT_UID=114
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mRaspbian pi5 test autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package plink1.9
dpkg-buildpackage: info: source version 1.90~b7.2-231211-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
make -j4 clean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
rm -f plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o plink plinkw
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
rm -f plink1.9
rm -f plink1.9.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
make -j4 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<PKGBUILDDIR>>'
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security plink.c -o plink.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security plink_assoc.c -o plink_assoc.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security plink_calc.c -o plink_calc.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security plink_cluster.c -o plink_cluster.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security plink_cnv.c -o plink_cnv.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security plink_common.c -o plink_common.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security plink_data.c -o plink_data.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security plink_dosage.c -o plink_dosage.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security plink_family.c -o plink_family.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security plink_filter.c -o plink_filter.o
In file included from plink_data.c:18:
plink_data.c: In function ‘int32_t ped_to_bed(char*, char*, char*, char*, uint32_t, uint64_t, int32_t, Chrom_info*)’:
plink_data.c:5832:24: warning: ‘%s’ directive output may be truncated writing between 9 and 2147483645 bytes into a region of size 262122 [-Wformat-truncation=]
5832 | LOGERRPRINTFWW("Error: Failed to open %s. (--file expects a filename *prefix*; '.ped' and '.map' are automatically appended.)\n", mapname);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
plink_common.h:1001:59: note: in definition of macro ‘LOGERRPRINTFWW’
1001 | #define LOGERRPRINTFWW(...) snprintf(g_logbuf, LOGBUFLEN, __VA_ARGS__); wordwrapb(0); logerrprintb();
| ^~~~~~~~~~~
plink_data.c:5832:47: note: format string is defined here
5832 | LOGERRPRINTFWW("Error: Failed to open %s. (--file expects a filename *prefix*; '.ped' and '.map' are automatically appended.)\n", mapname);
| ^~
In file included from /usr/include/stdio.h:906,
from plink_common.h:25:
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘int32_t ped_to_bed(char*, char*, char*, char*, uint32_t, uint64_t, int32_t, Chrom_info*)’ at plink_data.c:5832:2:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:54:35: note: ‘__builtin___snprintf_chk’ output between 118 and 2147483754 bytes into a destination of size 262144
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
plink_data.c: In function ‘int32_t vcf_to_bed(char*, char*, char*, int32_t, uint64_t, char*, char, char, double, char*, double, double, uint32_t, Chrom_info*)’:
plink_data.c:8040:24: warning: ‘%s’ directive output may be truncated writing between 5 and 2147483645 bytes into a region of size 262122 [-Wformat-truncation=]
8040 | LOGERRPRINTFWW("Error: Failed to open %s.\n", vcfname);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
plink_common.h:1001:59: note: in definition of macro ‘LOGERRPRINTFWW’
1001 | #define LOGERRPRINTFWW(...) snprintf(g_logbuf, LOGBUFLEN, __VA_ARGS__); wordwrapb(0); logerrprintb();
| ^~~~~~~~~~~
plink_data.c:8040:47: note: format string is defined here
8040 | LOGERRPRINTFWW("Error: Failed to open %s.\n", vcfname);
| ^~
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘int32_t vcf_to_bed(char*, char*, char*, int32_t, uint64_t, char*, char, char, double, char*, double, double, uint32_t, Chrom_info*)’ at plink_data.c:8040:2:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:54:35: note: ‘__builtin___snprintf_chk’ output between 30 and 2147483670 bytes into a destination of size 262144
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security plink_glm.c -o plink_glm.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security plink_help.c -o plink_help.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security plink_homozyg.c -o plink_homozyg.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security plink_lasso.c -o plink_lasso.o
plink_data.c: In function ‘int32_t merge_fam_id_scan(char*, char*, uint32_t, uintptr_t*, uint32_t*, uint32_t*, Ll_fam**, uint64_t*, uint32_t*, uint32_t*, uint32_t*)’:
plink_data.c:14584:22: warning: ‘%s’ directive output may be truncated writing between 9 and 2147483645 bytes into a region of size 262122 [-Wformat-truncation=]
14584 | LOGERRPRINTFWW("Error: Failed to open %s. (--bfile expects a filename *prefix*; '.bed', '.bim', and '.fam' are automatically appended.)\n", famname);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
plink_common.h:1001:59: note: in definition of macro ‘LOGERRPRINTFWW’
1001 | #define LOGERRPRINTFWW(...) snprintf(g_logbuf, LOGBUFLEN, __VA_ARGS__); wordwrapb(0); logerrprintb();
| ^~~~~~~~~~~
plink_data.c:14584:45: note: format string is defined here
14584 | LOGERRPRINTFWW("Error: Failed to open %s. (--bfile expects a filename *prefix*; '.bed', '.bim', and '.fam' are automatically appended.)\n", famname);
| ^~
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘int32_t merge_fam_id_scan(char*, char*, uint32_t, uintptr_t*, uint32_t*, uint32_t*, Ll_fam**, uint64_t*, uint32_t*, uint32_t*, uint32_t*)’ at plink_data.c:14584:7:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:54:35: note: ‘__builtin___snprintf_chk’ output between 128 and 2147483764 bytes into a destination of size 262144
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security plink_ld.c -o plink_ld.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security plink_matrix.c -o plink_matrix.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security plink_misc.c -o plink_misc.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security plink_perm.c -o plink_perm.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security plink_rserve.c -o plink_rserve.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security plink_set.c -o plink_set.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security plink_stats.c -o plink_stats.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security SFMT.c -o SFMT.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security dcdflib.c -o dcdflib.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security pigz.c -o pigz.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security yarn.c -o yarn.o
g++ -x c++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security Rconnection.cc -o Rconnection.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security hfile.c -o hfile.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security bgzf.c -o bgzf.o
g++ plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o -llapack -lblas -lm -lpthread -ldl `dpkg-buildflags --get LDFLAGS` -lz -o plink
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
mv plink plink1.9
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_install -a
dh_installdocs -a
debian/rules override_dh_installchangelogs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installchangelogs debian/upstream.docs/upstream.changelog
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installexamples -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installman debian/plink1.9.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/plink1.9/usr/lib/debian-med/bin/plink1.9 was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'plink1.9-dbgsym' in '../plink1.9-dbgsym_1.90~b7.2-231211-1_armhf.deb'.
dpkg-deb: building package 'plink1.9' in '../plink1.9_1.90~b7.2-231211-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../plink1.9_1.90~b7.2-231211-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi5 test autobuilder <root@raspbian.org> -O../plink1.9_1.90~b7.2-231211-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-01-14T12:38:32Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
plink1.9_1.90~b7.2-231211-1_armhf.changes:
------------------------------------------
Format: 1.8
Date: Thu, 11 Jan 2024 16:57:57 +0100
Source: plink1.9
Binary: plink1.9 plink1.9-dbgsym
Architecture: armhf
Version: 1.90~b7.2-231211-1
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian pi5 test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
plink1.9 - whole-genome association analysis toolset
Closes: 1056682
Changes:
plink1.9 (1.90~b7.2-231211-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* Do not Build-Depends on atlas
Closes: #1056682
* Fix debian/get-orig-source
* Standards-Version: 4.6.2 (routine-update)
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Files:
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70d81f2cb6894308337c47f42a5a0b95 5485 science optional plink1.9_1.90~b7.2-231211-1_armhf.buildinfo
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: plink1.9
Binary: plink1.9 plink1.9-dbgsym
Architecture: armhf
Version: 1.90~b7.2-231211-1
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sun, 14 Jan 2024 12:38:31 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
autoconf (= 2.71-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-14),
autotools-dev (= 20220109.1),
base-files (= 13+rpi1),
base-passwd (= 3.6.3),
bash (= 5.2.21-2),
binutils (= 2.41-6+rpi1),
binutils-arm-linux-gnueabihf (= 2.41-6+rpi1),
binutils-common (= 2.41-6+rpi1),
bsdextrautils (= 2.39.3-2),
bsdutils (= 1:2.39.3-2),
build-essential (= 12.10),
bzip2 (= 1.0.8-5+b2),
coreutils (= 9.1-1),
cpp (= 4:13.2.0-1+rpi1),
cpp-12 (= 12.3.0-13+rpi1),
cpp-13 (= 13.2.0-9+rpi1),
dash (= 0.5.12-6),
debconf (= 1.5.82),
debhelper (= 13.11.9),
debianutils (= 5.14),
dh-autoreconf (= 20),
dh-strip-nondeterminism (= 1.13.1-1),
diffutils (= 1:3.10-1),
dpkg (= 1.22.1+rpi1),
dpkg-dev (= 1.22.1+rpi1),
dwz (= 0.15-1),
file (= 1:5.45-2),
findutils (= 4.9.0-5),
g++ (= 4:13.2.0-1+rpi1),
g++-13 (= 13.2.0-9+rpi1),
gcc (= 4:13.2.0-1+rpi1),
gcc-12 (= 12.3.0-13+rpi1),
gcc-12-base (= 12.3.0-13+rpi1),
gcc-13 (= 13.2.0-9+rpi1),
gcc-13-base (= 13.2.0-9+rpi1),
gettext (= 0.21-14),
gettext-base (= 0.21-14),
grep (= 3.11-3),
groff-base (= 1.23.0-3),
gzip (= 1.12-1),
hostname (= 3.23+nmu1),
init-system-helpers (= 1.66),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.1-3),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 13.2.0-9+rpi1),
libatomic1 (= 13.2.0-9+rpi1),
libattr1 (= 1:2.5.1-4),
libaudit-common (= 1:3.1.2-1),
libaudit1 (= 1:3.1.2-1),
libbinutils (= 2.41-6+rpi1),
libblas-dev (= 3.11.0-2),
libblas3 (= 3.11.0-2),
libblkid1 (= 2.39.3-2),
libbz2-1.0 (= 1.0.8-5+b2),
libc-bin (= 2.37-12+rpi2),
libc-dev-bin (= 2.37-12+rpi2),
libc6 (= 2.37-12+rpi2),
libc6-dev (= 2.37-12+rpi2),
libcap-ng0 (= 0.8.3-3),
libcap2 (= 1:2.66-4),
libcc1-0 (= 13.2.0-9+rpi1),
libcom-err2 (= 1.47.0-2),
libcrypt-dev (= 1:4.4.36-2),
libcrypt1 (= 1:4.4.36-2),
libctf-nobfd0 (= 2.41-6+rpi1),
libctf0 (= 2.41-6+rpi1),
libdb5.3 (= 5.3.28+dfsg2-4),
libdebconfclient0 (= 0.271),
libdebhelper-perl (= 13.11.9),
libdpkg-perl (= 1.22.1+rpi1),
libelf1 (= 0.188-2.1+rpi1),
libfile-find-rule-perl (= 0.34-3),
libfile-stripnondeterminism-perl (= 1.13.1-1),
libgcc-12-dev (= 12.3.0-13+rpi1),
libgcc-13-dev (= 13.2.0-9+rpi1),
libgcc-s1 (= 13.2.0-9+rpi1),
libgcrypt20 (= 1.10.3-2),
libgdbm-compat4 (= 1.23-5),
libgdbm6 (= 1.23-5),
libgfortran5 (= 13.2.0-9+rpi1),
libgmp10 (= 2:6.3.0+dfsg-2),
libgomp1 (= 13.2.0-9+rpi1),
libgpg-error0 (= 1.47-3),
libgssapi-krb5-2 (= 1.20.1-5),
libicu72 (= 72.1-4),
libisl23 (= 0.26-3),
libjansson4 (= 2.14-2),
libk5crypto3 (= 1.20.1-5),
libkeyutils1 (= 1.6.3-2),
libkrb5-3 (= 1.20.1-5),
libkrb5support0 (= 1.20.1-5),
liblapack-dev (= 3.11.0-2),
liblapack3 (= 3.11.0-2),
liblz4-1 (= 1.9.4-1+rpi1+b1),
liblzma5 (= 5.4.5-0.1),
libmagic-mgc (= 1:5.45-2),
libmagic1 (= 1:5.45-2),
libmd0 (= 1.1.0-1),
libmount1 (= 2.39.3-2),
libmpc3 (= 1.3.1-1),
libmpfr6 (= 4.2.1-1),
libnsl-dev (= 1.3.0-3),
libnsl2 (= 1.3.0-3),
libnumber-compare-perl (= 0.03-3),
libpam-modules (= 1.5.2-9.1),
libpam-modules-bin (= 1.5.2-9.1),
libpam-runtime (= 1.5.2-9.1),
libpam0g (= 1.5.2-9.1),
libpcre2-8-0 (= 10.42-4),
libperl5.36 (= 5.36.0-10),
libpipeline1 (= 1.5.7-1),
libseccomp2 (= 2.5.4-2+rpi1),
libselinux1 (= 3.5-1),
libsframe1 (= 2.41-6+rpi1),
libsmartcols1 (= 2.39.3-2),
libssl3 (= 3.1.4-2),
libstdc++-13-dev (= 13.2.0-9+rpi1),
libstdc++6 (= 13.2.0-9+rpi1),
libsub-override-perl (= 0.10-1),
libsystemd0 (= 254.5-1+rpi1),
libtext-glob-perl (= 0.11-3),
libtinfo6 (= 6.4+20231209-1),
libtirpc-common (= 1.3.4+ds-1),
libtirpc-dev (= 1.3.4+ds-1),
libtirpc3 (= 1.3.4+ds-1),
libtool (= 2.4.7-7),
libubsan1 (= 13.2.0-9+rpi1),
libuchardet0 (= 0.0.8-1),
libudev1 (= 254.5-1+rpi1),
libunistring5 (= 1.1-2),
libuuid1 (= 2.39.3-2),
libxml2 (= 2.9.14+dfsg-1.3),
libzstd1 (= 1.5.5+dfsg2-2),
linux-libc-dev (= 6.5.6-1+rpi1),
login (= 1:4.13+dfsg1-3),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.12.0-1),
mawk (= 1.3.4.20231126-1),
ncurses-base (= 6.4+20231209-1),
ncurses-bin (= 6.4+20231209-1),
patch (= 2.7.6-7),
perl (= 5.36.0-10),
perl-base (= 5.36.0-10),
perl-modules-5.36 (= 5.36.0-10),
po-debconf (= 1.0.21+nmu1),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-1),
sensible-utils (= 0.0.20),
sysvinit-utils (= 3.08-5),
tar (= 1.34+dfsg-1.3),
usr-is-merged (= 38),
usrmerge (= 38),
util-linux (= 2.39.3-2),
xz-utils (= 5.4.5-0.1),
zlib1g (= 1:1.3.dfsg-3),
zlib1g-dev (= 1:1.3.dfsg-3)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
LC_COLLATE="C.UTF-8"
SOURCE_DATE_EPOCH="1704988677"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
plink1.9-dbgsym_1.90~b7.2-231211-1_armhf.deb
--------------------------------------------
new Debian package, version 2.0.
size 2739900 bytes: control archive=544 bytes.
397 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: plink1.9-dbgsym
Source: plink1.9
Version: 1.90~b7.2-231211-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2805
Depends: plink1.9 (= 1.90~b7.2-231211-1)
Section: debug
Priority: optional
Description: debug symbols for plink1.9
Build-Ids: 43ba3cf155475263b0581a7124e3b4e22c670770
drwxr-xr-x root/root 0 2024-01-11 15:57 ./
drwxr-xr-x root/root 0 2024-01-11 15:57 ./usr/
drwxr-xr-x root/root 0 2024-01-11 15:57 ./usr/lib/
drwxr-xr-x root/root 0 2024-01-11 15:57 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-01-11 15:57 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-01-11 15:57 ./usr/lib/debug/.build-id/43/
-rw-r--r-- root/root 2861068 2024-01-11 15:57 ./usr/lib/debug/.build-id/43/ba3cf155475263b0581a7124e3b4e22c670770.debug
drwxr-xr-x root/root 0 2024-01-11 15:57 ./usr/share/
drwxr-xr-x root/root 0 2024-01-11 15:57 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-01-11 15:57 ./usr/share/doc/plink1.9-dbgsym -> plink1.9
plink1.9_1.90~b7.2-231211-1_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 730212 bytes: control archive=1360 bytes.
1288 bytes, 26 lines control
897 bytes, 12 lines md5sums
Package: plink1.9
Version: 1.90~b7.2-231211-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1805
Depends: libblas3 | libblas.so.3, libc6 (>= 2.34), libgcc-s1 (>= 3.5), liblapack3 | liblapack.so.3, libstdc++6 (>= 13.1), zlib1g (>= 1:1.2.6)
Recommends: libopenblas0 | libblis4
Section: science
Priority: optional
Homepage: https://www.cog-genomics.org/plink/1.9/
Description: whole-genome association analysis toolset
plink expects as input the data from SNP (single nucleotide polymorphism)
chips of many individuals and their phenotypical description of a disease.
It finds associations of single or pairs of DNA variations with a phenotype
and can retrieve SNP annotation from an online source.
.
SNPs can evaluated individually or as pairs for their association with the
disease phenotypes. The joint investigation of copy number variations is
supported. A variety of statistical tests have been implemented.
.
plink1.9 is a comprehensive update of plink with new algorithms and new
methods, faster and less memory consumer than the first plink.
.
Please note: The executable was renamed to plink1.9
because of a name clash. Please read more about this
in /usr/share/doc/plink1.9/README.Debian.
drwxr-xr-x root/root 0 2024-01-11 15:57 ./
drwxr-xr-x root/root 0 2024-01-11 15:57 ./usr/
drwxr-xr-x root/root 0 2024-01-11 15:57 ./usr/bin/
lrwxrwxrwx root/root 0 2024-01-11 15:57 ./usr/bin/plink1.9 -> ../lib/debian-med/bin/plink1.9
drwxr-xr-x root/root 0 2024-01-11 15:57 ./usr/lib/
drwxr-xr-x root/root 0 2024-01-11 15:57 ./usr/lib/debian-med/
drwxr-xr-x root/root 0 2024-01-11 15:57 ./usr/lib/debian-med/bin/
-rwxr-xr-x root/root 1768132 2024-01-11 15:57 ./usr/lib/debian-med/bin/plink1.9
drwxr-xr-x root/root 0 2024-01-11 15:57 ./usr/lib/debian-med/share/
drwxr-xr-x root/root 0 2024-01-11 15:57 ./usr/lib/debian-med/share/man/
drwxr-xr-x root/root 0 2024-01-11 15:57 ./usr/lib/debian-med/share/man/man1/
lrwxrwxrwx root/root 0 2024-01-11 15:57 ./usr/lib/debian-med/share/man/man1/plink1.9.1.gz -> ../../../../../share/man/man1/plink1.9.1.gz
drwxr-xr-x root/root 0 2024-01-11 15:57 ./usr/share/
drwxr-xr-x root/root 0 2024-01-11 15:57 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-01-11 15:57 ./usr/share/doc/plink1.9/
-rw-r--r-- root/root 680 2024-01-11 15:57 ./usr/share/doc/plink1.9/README.Debian
-rw-r--r-- root/root 1054 2024-01-11 15:57 ./usr/share/doc/plink1.9/changelog.Debian.gz
-rw-r--r-- root/root 14454 2024-01-11 15:57 ./usr/share/doc/plink1.9/changelog.gz
-rw-r--r-- root/root 7739 2024-01-11 15:57 ./usr/share/doc/plink1.9/copyright
drwxr-xr-x root/root 0 2024-01-11 15:57 ./usr/share/doc/plink1.9/examples/
-rw-r--r-- root/root 325 2024-01-11 15:57 ./usr/share/doc/plink1.9/examples/README
-rw-r--r-- root/root 267 2024-01-11 15:57 ./usr/share/doc/plink1.9/examples/expected.plink.assoc
-rw-r--r-- root/root 126 2024-01-11 15:57 ./usr/share/doc/plink1.9/examples/expected.plink.frq
-rw-r--r-- root/root 566 2024-01-11 15:57 ./usr/share/doc/plink1.9/examples/run-sample-analysis
-rw-r--r-- root/root 27 2024-01-11 15:57 ./usr/share/doc/plink1.9/examples/toy.map
-rw-r--r-- root/root 58 2024-01-11 15:57 ./usr/share/doc/plink1.9/examples/toy.ped
drwxr-xr-x root/root 0 2024-01-11 15:57 ./usr/share/man/
drwxr-xr-x root/root 0 2024-01-11 15:57 ./usr/share/man/man1/
-rw-r--r-- root/root 28373 2024-01-11 15:57 ./usr/share/man/man1/plink1.9.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 33712
Build-Time: 57
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 28
Job: plink1.9_1.90~b7.2-231211-1
Machine Architecture: arm64
Package: plink1.9
Package-Time: 94
Source-Version: 1.90~b7.2-231211-1
Space: 33712
Status: successful
Version: 1.90~b7.2-231211-1
--------------------------------------------------------------------------------
Finished at 2024-01-14T12:38:32Z
Build needed 00:01:34, 33712k disk space