plink1.9 →
1.90~b6.24-211108-1 →
armhf → 2022-02-05 04:50:33
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| plink1.9 1.90~b6.24-211108-1 (armhf) Sat, 05 Feb 2022 04:35:40 +0000 |
+==============================================================================+
Package: plink1.9
Version: 1.90~b6.24-211108-1
Source Version: 1.90~b6.24-211108-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-0ea16f14-62a3-4c8c-b728-4213d8e84514' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [12.7 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.6 MB]
Fetched 26.4 MB in 26s (1017 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'plink1.9' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/plink1-9.git
Please use:
git clone https://salsa.debian.org/med-team/plink1-9.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 785 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main plink1.9 1.90~b6.24-211108-1 (dsc) [2165 B]
Get:2 http://172.17.4.1/private bookworm-staging/main plink1.9 1.90~b6.24-211108-1 (tar) [736 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main plink1.9 1.90~b6.24-211108-1 (diff) [46.8 kB]
Fetched 785 kB in 0s (4755 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/plink1.9-120xZu/plink1.9-1.90~b6.24-211108' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/plink1.9-120xZu' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-6wYZc4/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-6wYZc4/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-6wYZc4/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-6wYZc4/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-6wYZc4/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-6wYZc4/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-6wYZc4/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-6wYZc4/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-6wYZc4/apt_archive ./ Packages [434 B]
Fetched 2110 B in 1s (2895 B/s)
Reading package lists...
W: copy:/<<BUILDDIR>>/resolver-6wYZc4/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-6wYZc4/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 80 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-6wYZc4/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (21.6 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12559 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any-amd64 any-i386 armel armhf mipsel)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libatlas-base-dev, liblapack-dev, zlib1g-dev
Filtered Build-Depends: debhelper-compat (= 13), libatlas-base-dev, liblapack-dev, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-plink1.9-dummy' in '/<<BUILDDIR>>/resolver-6wYZc4/apt_archive/sbuild-build-depends-plink1.9-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-plink1.9-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-6wYZc4/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-6wYZc4/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-6wYZc4/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-6wYZc4/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-6wYZc4/apt_archive ./ Sources [517 B]
Get:5 copy:/<<BUILDDIR>>/resolver-6wYZc4/apt_archive ./ Packages [599 B]
Fetched 2449 B in 1s (3117 B/s)
Reading package lists...
W: copy:/<<BUILDDIR>>/resolver-6wYZc4/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-6wYZc4/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install plink1.9 build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cpp-11 debhelper
dh-autoreconf dh-strip-nondeterminism dwz file g++-11 gcc-11 gcc-11-base
gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6
libatlas-base-dev libatlas3-base libatomic1 libcc1-0 libdebhelper-perl
libelf1 libfile-stripnondeterminism-perl libgcc-11-dev libgcc-s1
libgfortran5 libgomp1 libicu67 liblapack-dev liblapack3 libmagic-mgc
libmagic1 libpipeline1 libsigsegv2 libstdc++-11-dev libstdc++6
libsub-override-perl libtool libubsan1 libuchardet0 libxml2 m4 man-db
po-debconf zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc gcc-11-locales dh-make
gcc-11-doc gettext-doc libasprintf-dev libgettextpo-dev groff libatlas-doc
liblapack-doc libstdc++-11-doc libtool-doc gfortran | fortran95-compiler
gcj-jdk m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libatlas-base-dev
libatlas3-base libdebhelper-perl libelf1 libfile-stripnondeterminism-perl
libgfortran5 libicu67 liblapack-dev liblapack3 libmagic-mgc libmagic1
libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2
m4 man-db po-debconf sbuild-build-depends-plink1.9-dummy zlib1g-dev
The following packages will be upgraded:
cpp-11 g++-11 gcc-11 gcc-11-base libasan6 libatomic1 libcc1-0 libgcc-11-dev
libgcc-s1 libgomp1 libstdc++-11-dev libstdc++6 libubsan1
13 upgraded, 37 newly installed, 0 to remove and 67 not upgraded.
Need to get 62.4 MB of archives.
After this operation, 224 MB disk space will be freed.
Get:1 copy:/<<BUILDDIR>>/resolver-6wYZc4/apt_archive ./ sbuild-build-depends-plink1.9-dummy 0.invalid.0 [880 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 11.2.0-14+rpi1 [37.9 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 11.2.0-14+rpi1 [88.0 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 11.2.0-14+rpi1 [8196 B]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libasan6 armhf 11.2.0-14+rpi1 [1947 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 11.2.0-14+rpi1 [798 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf gcc-11-base armhf 11.2.0-14+rpi1 [207 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 11.2.0-14+rpi1 [467 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf g++-11 armhf 11.2.0-14+rpi1 [7912 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-11-dev armhf 11.2.0-14+rpi1 [1963 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libgcc-11-dev armhf 11.2.0-14+rpi1 [697 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf gcc-11 armhf 11.2.0-14+rpi1 [14.0 MB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf cpp-11 armhf 11.2.0-14+rpi1 [7073 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 11.2.0-14+rpi1 [36.2 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.3-1 [136 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.5-1 [32.9 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.9.4-4 [1308 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.1 [823 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.6 [193 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.6 [1054 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-14+rpi1 [235 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libatlas3-base armhf 3.10.3-12+rpi1 [2281 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libatlas-base-dev armhf 3.10.3-12+rpi1 [2450 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.0-2 [1590 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.0-2 [2851 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libgcc-s1:armhf (11.2.0-14+rpi1) ...
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Setting up libpipeline1:armhf (1.5.5-1) ...
Setting up cpp-11 (11.2.0-14+rpi1) ...
Setting up bsdextrautils (2.37.3-1) ...
Setting up libicu67:armhf (67.1-7) ...
Setting up libmagic-mgc (1:5.41-2) ...
Setting up libarchive-zip-perl (1.68-1) ...
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Setting up libmagic1:armhf (1:5.41-2) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.41-2) ...
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Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libsigsegv2:armhf (2.14-1) ...
Setting up libatomic1:armhf (11.2.0-14+rpi1) ...
Setting up autopoint (0.21-4) ...
Setting up libgfortran5:armhf (11.2.0-14+rpi1) ...
Setting up libubsan1:armhf (11.2.0-14+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up libgcc-11-dev:armhf (11.2.0-14+rpi1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libelf1:armhf (0.186-1) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up libcc1-0:armhf (11.2.0-14+rpi1) ...
Setting up libfile-stripnondeterminism-perl (1.13.0-1) ...
Setting up gettext (0.21-4) ...
Setting up libatlas3-base:armhf (3.10.3-12+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/atlas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/atlas/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libtool (2.4.6-15) ...
Setting up m4 (1.4.18-5) ...
Setting up libatlas-base-dev:armhf (3.10.3-12+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/atlas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/atlas/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up autoconf (2.71-2) ...
Setting up libstdc++-11-dev:armhf (11.2.0-14+rpi1) ...
Setting up dh-strip-nondeterminism (1.13.0-1) ...
Setting up dwz (0.14-1) ...
Setting up gcc-11 (11.2.0-14+rpi1) ...
Setting up groff-base (1.22.4-8) ...
Setting up automake (1:1.16.5-1.1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up liblapack3:armhf (3.10.0-2) ...
Setting up g++-11 (11.2.0-14+rpi1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.9.4-4) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up liblapack-dev:armhf (3.10.0-2) ...
Setting up debhelper (13.6) ...
Setting up sbuild-build-depends-plink1.9-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-11_11.2.0-14+rpi1 gcc-11_11.2.0-14+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-11-dev_11.2.0-14+rpi1 libstdc++6_11.2.0-14+rpi1 linux-libc-dev_5.14.16-1+rpi1
Package versions: adduser_3.118 apt_2.3.12 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-3.1 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.3-1 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-14+rpi1 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.6 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.41-2 findutils_4.8.0-1 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-14+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-14+rpi1 gcc-11-base_11.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.12 libarchive-zip-perl_1.68-1 libasan6_11.2.0-14+rpi1 libassuan0_2.5.5-1 libatlas-base-dev_3.10.3-12+rpi1 libatlas3-base_3.10.3-12+rpi1 libatomic1_11.2.0-14+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37-5+rpi1 libblkid1_2.37.2-4 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-14+rpi1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.26-1 libcrypt1_1:4.4.26-1 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.261 libdebhelper-perl_13.6 libdpkg-perl_1.20.9+rpi1 libelf1_0.186-1 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi8_3.4.2-3 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-11-dev_11.2.0-14+rpi1 libgcc-s1_11.2.0-14+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgfortran5_11.2.0-14+rpi1 libgmp10_2:6.2.1+dfsg-3 libgnutls30_3.7.2-2 libgomp1_11.2.0-14+rpi1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.24-2 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 liblapack-dev_3.10.0-2 liblapack3_3.10.0-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpfr6_4.1.0-3 libncursesw6_6.3-1 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.5-1 libreadline8_8.1-2 libsasl2-2_2.1.27+dfsg2-2 libsasl2-modules-db_2.1.27+dfsg2-2 libseccomp2_2.5.3-2+rpi1 libselinux1_3.3-1 libsemanage-common_3.3-1 libsemanage2_3.3-1 libsepol1_3.1-1 libsepol2_3.3-1 libsigsegv2_2.14-1 libsmartcols1_2.37.2-4 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssl1.1_1.1.1l-1 libstdc++-11-dev_11.2.0-14+rpi1 libstdc++6_11.2.0-14+rpi1 libsub-override-perl_0.09-2 libsystemd0_249.7-1+rpi1 libtasn1-6_4.18.0-4 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.3-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-14+rpi1 libuchardet0_0.0.7-1 libudev1_249.7-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-4 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.14.16-1+rpi1 login_1:4.8.1-2 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-4 mawk_1.3.4.20200120-2 mount_2.37.2-4 ncurses-base_6.3-1 ncurses-bin_6.3-1 netbase_6.3 passwd_1:4.8.1-2 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-plink1.9-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021e-1 util-linux_2.37.2-4 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.tft6NV5O/trustedkeys.kbx': General error
gpgv: Signature made Thu Feb 3 08:24:26 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./plink1.9_1.90~b6.24-211108-1.dsc
dpkg-source: info: extracting plink1.9 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking plink1.9_1.90~b6.24-211108.orig.tar.xz
dpkg-source: info: unpacking plink1.9_1.90~b6.24-211108-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_makefile.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-0ea16f14-62a3-4c8c-b728-4213d8e84514
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package plink1.9
dpkg-buildpackage: info: source version 1.90~b6.24-211108-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
make -j4 clean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
rm -f plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o plink plinkw
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
rm -f plink1.9
rm -f plink1.9.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
make -j4 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<PKGBUILDDIR>>'
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink.c -o plink.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_assoc.c -o plink_assoc.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_calc.c -o plink_calc.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_cluster.c -o plink_cluster.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_cnv.c -o plink_cnv.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_common.c -o plink_common.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_data.c -o plink_data.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_dosage.c -o plink_dosage.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_family.c -o plink_family.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_filter.c -o plink_filter.o
In file included from plink_data.c:18:
plink_data.c: In function 'int32_t ped_to_bed(char*, char*, char*, char*, uint32_t, uint64_t, int32_t, Chrom_info*)':
plink_data.c:5824:24: warning: '%s' directive writing between 9 and 2147483645 bytes into a region of size 2147483625 [-Wformat-overflow=]
5824 | LOGERRPRINTFWW("Error: Failed to open %s. (--file expects a filename *prefix*; '.ped' and '.map' are automatically appended.)\n", mapname);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
plink_common.h:998:47: note: in definition of macro 'LOGERRPRINTFWW'
998 | #define LOGERRPRINTFWW(...) sprintf(g_logbuf, __VA_ARGS__); wordwrapb(0); logerrprintb();
| ^~~~~~~~~~~
plink_data.c:5824:47: note: format string is defined here
5824 | LOGERRPRINTFWW("Error: Failed to open %s. (--file expects a filename *prefix*; '.ped' and '.map' are automatically appended.)\n", mapname);
| ^~
In file included from /usr/include/stdio.h:866,
from plink_common.h:25,
from plink_data.c:18:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 118 and 2147483754 bytes into a destination of size 2147483647
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from plink_data.c:18:
plink_data.c: In function 'int32_t vcf_to_bed(char*, char*, char*, int32_t, uint64_t, char*, char, char, double, char*, double, double, uint32_t, Chrom_info*)':
plink_data.c:8029:24: warning: '%s' directive writing between 5 and 2147483645 bytes into a region of size 2147483625 [-Wformat-overflow=]
8029 | LOGERRPRINTFWW("Error: Failed to open %s.\n", vcfname);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
plink_common.h:998:47: note: in definition of macro 'LOGERRPRINTFWW'
998 | #define LOGERRPRINTFWW(...) sprintf(g_logbuf, __VA_ARGS__); wordwrapb(0); logerrprintb();
| ^~~~~~~~~~~
plink_data.c:8029:47: note: format string is defined here
8029 | LOGERRPRINTFWW("Error: Failed to open %s.\n", vcfname);
| ^~
In file included from /usr/include/stdio.h:866,
from plink_common.h:25,
from plink_data.c:18:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 30 and 2147483670 bytes into a destination of size 2147483647
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_glm.c -o plink_glm.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_help.c -o plink_help.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_homozyg.c -o plink_homozyg.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_lasso.c -o plink_lasso.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_ld.c -o plink_ld.o
In file included from plink_data.c:18:
plink_data.c: In function 'int32_t merge_fam_id_scan(char*, char*, uint32_t, uintptr_t*, uint32_t*, uint32_t*, Ll_fam**, uint64_t*, uint32_t*, uint32_t*, uint32_t*)':
plink_data.c:14574:22: warning: '%s' directive writing between 9 and 2147483645 bytes into a region of size 2147483625 [-Wformat-overflow=]
14574 | LOGERRPRINTFWW("Error: Failed to open %s. (--bfile expects a filename *prefix*; '.bed', '.bim', and '.fam' are automatically appended.)\n", famname);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
plink_common.h:998:47: note: in definition of macro 'LOGERRPRINTFWW'
998 | #define LOGERRPRINTFWW(...) sprintf(g_logbuf, __VA_ARGS__); wordwrapb(0); logerrprintb();
| ^~~~~~~~~~~
plink_data.c:14574:45: note: format string is defined here
14574 | LOGERRPRINTFWW("Error: Failed to open %s. (--bfile expects a filename *prefix*; '.bed', '.bim', and '.fam' are automatically appended.)\n", famname);
| ^~
In file included from /usr/include/stdio.h:866,
from plink_common.h:25,
from plink_data.c:18:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 128 and 2147483764 bytes into a destination of size 2147483647
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_matrix.c -o plink_matrix.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_misc.c -o plink_misc.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_perm.c -o plink_perm.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_rserve.c -o plink_rserve.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_set.c -o plink_set.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_stats.c -o plink_stats.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security SFMT.c -o SFMT.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security dcdflib.c -o dcdflib.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security pigz.c -o pigz.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security yarn.c -o yarn.o
g++ -x c++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security Rconnection.cc -o Rconnection.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security hfile.c -o hfile.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security bgzf.c -o bgzf.o
g++ plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o -L/usr/lib64/atlas -llapack -lblas -lcblas -latlas -lm -lpthread -ldl `dpkg-buildflags --get LDFLAGS` -lz -o plink
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
mv plink plink1.9
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_install -a
dh_installdocs -a
debian/rules override_dh_installchangelogs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installchangelogs debian/upstream.docs/upstream.changelog
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installexamples -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installman debian/plink1.9.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/plink1.9/usr/lib/debian-med/bin/plink1.9 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/plink1.9/usr/lib/debian-med/bin/plink1.9 was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'plink1.9-dbgsym' in '../plink1.9-dbgsym_1.90~b6.24-211108-1_armhf.deb'.
dpkg-deb: building package 'plink1.9' in '../plink1.9_1.90~b6.24-211108-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../plink1.9_1.90~b6.24-211108-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-02-05T04:50:26Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
plink1.9_1.90~b6.24-211108-1_armhf.changes:
-------------------------------------------
Format: 1.8
Date: Thu, 03 Feb 2022 09:20:26 +0100
Source: plink1.9
Binary: plink1.9 plink1.9-dbgsym
Architecture: armhf
Version: 1.90~b6.24-211108-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
plink1.9 - whole-genome association analysis toolset
Changes:
plink1.9 (1.90~b6.24-211108-1) unstable; urgency=medium
.
* Team upload.
* New upstream bugfix release
* Upstream provides unversioned download thus we need to read the
version out of the source code which is done in debian/get-orig-source
The watch file is deactivated to avoid noise with uscan
* Standards-Version: 4.6.0 (routine-update)
* Remove obsolete field Contact from debian/upstream/metadata (already present
in machine-readable debian/copyright).
Checksums-Sha1:
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b40d993252ed05f7c31053855b6b70fb5aae53ed 5134 plink1.9_1.90~b6.24-211108-1_armhf.buildinfo
b0e43c5bcd411aefd17030d2bf5620e55924eb11 722684 plink1.9_1.90~b6.24-211108-1_armhf.deb
Checksums-Sha256:
e950add08895df21721741ff6ce34b49461027dfc377d843230c445229a48c2c 2735704 plink1.9-dbgsym_1.90~b6.24-211108-1_armhf.deb
c71c0cf35b796ace57cdfe208af5b1b73953db833b69bed15d10e06489013aef 5134 plink1.9_1.90~b6.24-211108-1_armhf.buildinfo
937b9548e8e4f205adc45ba7512a0af0d5b1c502eb9e49b663819426740d3aeb 722684 plink1.9_1.90~b6.24-211108-1_armhf.deb
Files:
934f18e6c60eaf36dcc9499072f231a5 2735704 debug optional plink1.9-dbgsym_1.90~b6.24-211108-1_armhf.deb
9133352f60736b66704ac0def177984a 5134 science optional plink1.9_1.90~b6.24-211108-1_armhf.buildinfo
905a96a15640839ffe545234dcc1ce0c 722684 science optional plink1.9_1.90~b6.24-211108-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
plink1.9-dbgsym_1.90~b6.24-211108-1_armhf.deb
---------------------------------------------
new Debian package, version 2.0.
size 2735704 bytes: control archive=544 bytes.
399 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: plink1.9-dbgsym
Source: plink1.9
Version: 1.90~b6.24-211108-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2810
Depends: plink1.9 (= 1.90~b6.24-211108-1)
Section: debug
Priority: optional
Description: debug symbols for plink1.9
Build-Ids: ffb55222962ebf243d29f3beed90efeb328650a5
drwxr-xr-x root/root 0 2022-02-03 08:20 ./
drwxr-xr-x root/root 0 2022-02-03 08:20 ./usr/
drwxr-xr-x root/root 0 2022-02-03 08:20 ./usr/lib/
drwxr-xr-x root/root 0 2022-02-03 08:20 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-02-03 08:20 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-02-03 08:20 ./usr/lib/debug/.build-id/ff/
-rw-r--r-- root/root 2866428 2022-02-03 08:20 ./usr/lib/debug/.build-id/ff/b55222962ebf243d29f3beed90efeb328650a5.debug
drwxr-xr-x root/root 0 2022-02-03 08:20 ./usr/share/
drwxr-xr-x root/root 0 2022-02-03 08:20 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-02-03 08:20 ./usr/share/doc/plink1.9-dbgsym -> plink1.9
plink1.9_1.90~b6.24-211108-1_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 722684 bytes: control archive=1344 bytes.
1250 bytes, 25 lines control
897 bytes, 12 lines md5sums
Package: plink1.9
Version: 1.90~b6.24-211108-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1799
Depends: libblas3 | libblas.so.3, libc6 (>= 2.29), libgcc-s1 (>= 3.5), liblapack3 | liblapack.so.3, libstdc++6 (>= 5), zlib1g (>= 1:1.2.6)
Section: science
Priority: optional
Homepage: https://www.cog-genomics.org/plink/1.9/
Description: whole-genome association analysis toolset
plink expects as input the data from SNP (single nucleotide polymorphism)
chips of many individuals and their phenotypical description of a disease.
It finds associations of single or pairs of DNA variations with a phenotype
and can retrieve SNP annotation from an online source.
.
SNPs can evaluated individually or as pairs for their association with the
disease phenotypes. The joint investigation of copy number variations is
supported. A variety of statistical tests have been implemented.
.
plink1.9 is a comprehensive update of plink with new algorithms and new
methods, faster and less memory consumer than the first plink.
.
Please note: The executable was renamed to plink1.9
because of a name clash. Please read more about this
in /usr/share/doc/plink1.9/README.Debian.
drwxr-xr-x root/root 0 2022-02-03 08:20 ./
drwxr-xr-x root/root 0 2022-02-03 08:20 ./usr/
drwxr-xr-x root/root 0 2022-02-03 08:20 ./usr/bin/
lrwxrwxrwx root/root 0 2022-02-03 08:20 ./usr/bin/plink1.9 -> ../lib/debian-med/bin/plink1.9
drwxr-xr-x root/root 0 2022-02-03 08:20 ./usr/lib/
drwxr-xr-x root/root 0 2022-02-03 08:20 ./usr/lib/debian-med/
drwxr-xr-x root/root 0 2022-02-03 08:20 ./usr/lib/debian-med/bin/
-rwxr-xr-x root/root 1759964 2022-02-03 08:20 ./usr/lib/debian-med/bin/plink1.9
drwxr-xr-x root/root 0 2022-02-03 08:20 ./usr/lib/debian-med/share/
drwxr-xr-x root/root 0 2022-02-03 08:20 ./usr/lib/debian-med/share/man/
drwxr-xr-x root/root 0 2022-02-03 08:20 ./usr/lib/debian-med/share/man/man1/
lrwxrwxrwx root/root 0 2022-02-03 08:20 ./usr/lib/debian-med/share/man/man1/plink1.9.1.gz -> ../../../../../share/man/man1/plink1.9.1.gz
drwxr-xr-x root/root 0 2022-02-03 08:20 ./usr/share/
drwxr-xr-x root/root 0 2022-02-03 08:20 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-02-03 08:20 ./usr/share/doc/plink1.9/
-rw-r--r-- root/root 680 2022-02-03 08:20 ./usr/share/doc/plink1.9/README.Debian
-rw-r--r-- root/root 3351 2022-02-03 08:20 ./usr/share/doc/plink1.9/changelog.Debian.gz
-rw-r--r-- root/root 14347 2022-02-03 08:20 ./usr/share/doc/plink1.9/changelog.gz
-rw-r--r-- root/root 7739 2022-02-03 08:20 ./usr/share/doc/plink1.9/copyright
drwxr-xr-x root/root 0 2022-02-03 08:20 ./usr/share/doc/plink1.9/examples/
-rw-r--r-- root/root 325 2022-02-03 08:20 ./usr/share/doc/plink1.9/examples/README
-rw-r--r-- root/root 267 2022-02-03 08:20 ./usr/share/doc/plink1.9/examples/expected.plink.assoc
-rw-r--r-- root/root 126 2022-02-03 08:20 ./usr/share/doc/plink1.9/examples/expected.plink.frq
-rw-r--r-- root/root 566 2022-02-03 08:20 ./usr/share/doc/plink1.9/examples/run-sample-analysis
-rw-r--r-- root/root 27 2022-02-03 08:20 ./usr/share/doc/plink1.9/examples/toy.map
-rw-r--r-- root/root 58 2022-02-03 08:20 ./usr/share/doc/plink1.9/examples/toy.ped
drwxr-xr-x root/root 0 2022-02-03 08:20 ./usr/share/man/
drwxr-xr-x root/root 0 2022-02-03 08:20 ./usr/share/man/man1/
-rw-r--r-- root/root 28373 2022-02-03 08:20 ./usr/share/man/man1/plink1.9.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 33424
Build-Time: 395
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 442
Job: plink1.9_1.90~b6.24-211108-1
Machine Architecture: armhf
Package: plink1.9
Package-Time: 886
Source-Version: 1.90~b6.24-211108-1
Space: 33424
Status: successful
Version: 1.90~b6.24-211108-1
--------------------------------------------------------------------------------
Finished at 2022-02-05T04:50:26Z
Build needed 00:14:46, 33424k disc space