plink1.9 →
1.90~b6.11-191024-1 →
armhf → 2019-10-28 05:13:24
sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on test2019
+==============================================================================+
| plink1.9 1.90~b6.11-191024-1 (armhf) Mon, 28 Oct 2019 05:01:13 +0000 |
+==============================================================================+
Package: plink1.9
Version: 1.90~b6.11-191024-1
Source Version: 1.90~b6.11-191024-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-dfab8504-1f8f-448c-83af-21fd7c333566' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.4 MB in 23s (1067 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'plink1.9' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/plink1-9.git
Please use:
git clone https://salsa.debian.org/med-team/plink1-9.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 756 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main plink1.9 1.90~b6.11-191024-1 (dsc) [2170 B]
Get:2 http://172.17.0.1/private bullseye-staging/main plink1.9 1.90~b6.11-191024-1 (tar) [733 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main plink1.9 1.90~b6.11-191024-1 (diff) [20.2 kB]
Fetched 756 kB in 0s (1635 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/plink1.9-yUuztB/plink1.9-1.90~b6.11-191024' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/plink1.9-yUuztB' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-Gnvsfg/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-Gnvsfg/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-Gnvsfg/gpg/trustdb.gpg: trustdb created
gpg: key E70254B6505CF8F7: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key E70254B6505CF8F7: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key E70254B6505CF8F7: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Gnvsfg/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Gnvsfg/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Gnvsfg/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-Gnvsfg/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-Gnvsfg/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Gnvsfg/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (3644 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-Gnvsfg/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-Gnvsfg/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY E70254B6505CF8F7
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
libpam-cap
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 6 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Gnvsfg/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14096 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any-amd64 any-i386 armel armhf mipsel)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 12~), help2man, libatlas-base-dev, liblapack-dev, zlib1g-dev
Filtered Build-Depends: debhelper (>= 12~), help2man, libatlas-base-dev, liblapack-dev, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-plink1.9-dummy' in '/<<BUILDDIR>>/resolver-Gnvsfg/apt_archive/sbuild-build-depends-plink1.9-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-plink1.9-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Gnvsfg/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Gnvsfg/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Gnvsfg/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-Gnvsfg/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-Gnvsfg/apt_archive ./ Sources [523 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Gnvsfg/apt_archive ./ Packages [602 B]
Fetched 2458 B in 1s (3617 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-Gnvsfg/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-Gnvsfg/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY E70254B6505CF8F7
Reading package lists...
Install plink1.9 build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
libpam-cap
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base help2man intltool-debian libarchive-zip-perl libatlas-base-dev
libatlas3-base libbsd0 libcroco3 libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libicu63
liblapack-dev liblapack3 liblocale-gettext-perl libmagic-mgc libmagic1
libncurses6 libpipeline1 libsigsegv2 libsub-override-perl libtinfo5 libtool
libuchardet0 libxml2 m4 man-db po-debconf sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libatlas-doc liblapack-doc libtool-doc gfortran | fortran95-compiler gcj-jdk
m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base help2man intltool-debian libarchive-zip-perl libatlas-base-dev
libatlas3-base libbsd0 libcroco3 libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libicu63
liblapack-dev liblapack3 liblocale-gettext-perl libmagic-mgc libmagic1
libncurses6 libpipeline1 libsigsegv2 libsub-override-perl libtinfo5 libtool
libuchardet0 libxml2 m4 man-db po-debconf
sbuild-build-depends-plink1.9-dummy sensible-utils zlib1g-dev
0 upgraded, 45 newly installed, 0 to remove and 6 not upgraded.
Need to get 29.0 MB of archives.
After this operation, 124 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Gnvsfg/apt_archive ./ sbuild-build-depends-plink1.9-dummy 0.invalid.0 [892 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf liblocale-gettext-perl armhf 1.07-3+b5 [18.3 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20190803-1 [314 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.8.7-3 [1254 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.37-6 [253 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.37-6 [111 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.37-6 [66.2 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.1-1 [23.5 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.1-1 [14.4 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-1 [69.7 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.7.1 [173 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.1-1 [1134 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b2 [571 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20190803-1 [79.3 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.7.1 [997 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf help2man armhf 1.47.11 [180 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 9.2.1-8+rpi1 [231 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libatlas3-base armhf 3.10.3-8+rpi1 [2399 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libatlas-base-dev armhf 3.10.3-8+rpi1 [2966 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.8.0-7 [1568 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.8.0-7 [2840 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking liblapack-dev:armhf (3.8.0-7) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../43-zlib1g-dev_1%3a1.2.11.dfsg-1_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Selecting previously unselected package sbuild-build-depends-plink1.9-dummy.
Preparing to unpack .../44-sbuild-build-depends-plink1.9-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-plink1.9-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.1-2) ...
Setting up libmagic-mgc (1:5.37-6) ...
Setting up libarchive-zip-perl (1.67-1) ...
Setting up libglib2.0-0:armhf (2.62.1-1) ...
No schema files found: doing nothing.
Setting up libdebhelper-perl (12.7.1) ...
Setting up libmagic1:armhf (1:5.37-6) ...
Setting up gettext-base (0.19.8.1-9) ...
Setting up file (1:5.37-6) ...
Setting up libicu63:armhf (63.2-2) ...
Setting up autotools-dev (20180224.1) ...
Setting up libncurses6:armhf (6.1+20190803-1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-9) ...
Setting up libgfortran5:armhf (9.2.1-8+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Setting up sensible-utils (0.0.12) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.1+20190803-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7+b2) ...
Setting up liblocale-gettext-perl (1.07-3+b5) ...
Setting up libfile-stripnondeterminism-perl (1.6.1-1) ...
Setting up libatlas3-base:armhf (3.10.3-8+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/atlas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/atlas/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libtool (2.4.6-11) ...
Setting up m4 (1.4.18-2) ...
Setting up libatlas-base-dev:armhf (3.10.3-8+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/atlas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/atlas/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up help2man (1.47.11) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11) ...
Setting up dwz (0.13-1) ...
Setting up groff-base (1.22.4-3) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up liblapack3:armhf (3.8.0-7) ...
Setting up gettext (0.19.8.1-9) ...
Setting up man-db (2.8.7-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up liblapack-dev:armhf (3.8.0-7) ...
Setting up po-debconf (1.0.21) ...
Setting up debhelper (12.7.1) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (1.6.1-1) ...
Setting up sbuild-build-depends-plink1.9-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-2+rpi1) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ armhf (armv7l)
Toolchain package versions: binutils_2.32.51.20190909-1+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-8+rpi1 gcc-9_9.2.1-8+rpi1 libc6-dev_2.29-2+rpi1 libstdc++-9-dev_9.2.1-8+rpi1 libstdc++6_9.2.1-8+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190909-1+rpi1 binutils-arm-linux-gnueabihf_2.32.51.20190909-1+rpi1 binutils-common_2.32.51.20190909-1+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3+rpi1 cpp-9_9.2.1-8+rpi1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.1 debianutils_4.9 dh-autoreconf_19 dh-strip-nondeterminism_1.6.1-1 diffutils_1:3.7-3 dirmngr_2.2.17-3+b1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 g++_4:9.2.1-3+rpi1 g++-9_9.2.1-8+rpi1 gcc_4:9.2.1-3+rpi1 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1+b3 gcc-7-base_7.4.0-14 gcc-9_9.2.1-8+rpi1 gcc-9-base_9.2.1-8+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.17-3 gnupg-l10n_2.2.17-3 gnupg-utils_2.2.17-3+b1 gpg_2.2.17-3+b1 gpg-agent_2.2.17-3+b1 gpg-wks-client_2.2.17-3+b1 gpg-wks-server_2.2.17-3+b1 gpgconf_2.2.17-3+b1 gpgsm_2.2.17-3+b1 gpgv_2.2.17-3+b1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 help2man_1.47.11 hostname_3.22 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-2 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-8+rpi1 libassuan0_2.5.3-7 libatlas-base-dev_3.10.3-8+rpi1 libatlas3-base_3.10.3-8+rpi1 libatomic1_9.2.1-8+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.32.51.20190909-1+rpi1 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-2+rpi1 libc-dev-bin_2.29-2+rpi1 libc6_2.29-2+rpi1 libc6-dev_2.29-2+rpi1 libcap-ng0_0.7.9-2 libcap2_1:2.25-2 libcap2-bin_1:2.25-2 libcc1-0_9.2.1-8+rpi1 libcom-err2_1.45.4-1 libcroco3_0.6.13-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebhelper-perl_12.7.1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.1-1 libgcc-9-dev_9.2.1-8+rpi1 libgcc1_1:9.2.1-8+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_9.2.1-8+rpi1 libglib2.0-0_2.62.1-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-5 libgomp1_9.2.1-8+rpi1 libgpg-error0_1.36-7 libhogweed4_3.4.1-1 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl19_0.20-2 libisl21_0.21-2 libksba8_1.3.5-2 liblapack-dev_3.8.0-7 liblapack3_3.8.0-7 libldap-2.4-2_2.4.48+dfsg-1+b1 libldap-common_2.4.48+dfsg-1 liblocale-gettext-perl_1.07-3+b5 liblz4-1_1.9.1-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.4.1-1 libnpth0_1.6-1 libp11-kit0_0.23.17-2 libpam-cap_1:2.25-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libperl5.30_5.30.0-7 libpipeline1_1.5.1-2 libreadline7_7.0-5 libreadline8_8.0-3 libsasl2-2_2.1.27+dfsg-1+b1 libsasl2-modules-db_2.1.27+dfsg-1+b1 libseccomp2_2.4.1-2+rpi1 libselinux1_2.9-2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.30.1-1 libss2_1.45.4-1 libstdc++-9-dev_9.2.1-8+rpi1 libstdc++6_9.2.1-8+rpi1 libsub-override-perl_0.09-2 libsystemd0_242-7+rpi1 libtasn1-6_4.14-3 libtinfo5_6.1+20190803-1 libtinfo6_6.1+20190803-1 libtool_2.4.6-11 libubsan1_9.2.1-8+rpi1 libuchardet0_0.0.6-3 libudev1_242-7+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml2_2.9.4+dfsg1-7+b2 libzstd1_1.4.3+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.7-3 mawk_1.3.3-17 mount_2.34-0.1 ncurses-base_6.1+20190803-1 ncurses-bin_6.1+20190803-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.30.0-7 perl-base_5.30.0-7 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-7 pinentry-curses_1.1.0-3 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-plink1.9-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96~beta-3 tar_1.30+dfsg-6 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Oct 25 20:59:20 2019 UTC
gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv: issuer "daissi@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./plink1.9_1.90~b6.11-191024-1.dsc
dpkg-source: info: extracting plink1.9 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking plink1.9_1.90~b6.11-191024.orig.tar.xz
dpkg-source: info: unpacking plink1.9_1.90~b6.11-191024-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/build/buildd
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=116
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-dfab8504-1f8f-448c-83af-21fd7c333566
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_ID=c156888
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package plink1.9
dpkg-buildpackage: info: source version 1.90~b6.11-191024-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
make -j4 clean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
rm -f plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o plink plinkw
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
rm -f plink1.9
rm -f plink1.9.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
make -j4 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<PKGBUILDDIR>>'
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink.c -o plink.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_assoc.c -o plink_assoc.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_calc.c -o plink_calc.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_cluster.c -o plink_cluster.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_cnv.c -o plink_cnv.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_common.c -o plink_common.o
plink.c: In function 'int32_t main(int32_t, char**)':
plink.c:6842:25: warning: 'int __builtin_memcmp_eq(const void*, const void*, unsigned int)' reading 22 bytes from a region of size 19 [-Wstringop-overflow=]
6842 | } else if (!memcmp(argptr2, "lip-scan-window-kb", 22)) {
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
plink.c:10703:25: warning: 'int __builtin_memcmp_eq(const void*, const void*, unsigned int)' reading 19 bytes from a region of size 16 [-Wstringop-overflow=]
10703 | } else if (!memcmp(argptr2, "ead-genome-list", 19)) {
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_data.c -o plink_data.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_dosage.c -o plink_dosage.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_family.c -o plink_family.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_filter.c -o plink_filter.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_glm.c -o plink_glm.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_help.c -o plink_help.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_homozyg.c -o plink_homozyg.o
In file included from /usr/include/string.h:494,
from plink_common.h:27,
from plink_glm.c:18:
In function 'void* memcpy(void*, const void*, size_t)',
inlined from 'int32_t glm_linear_nosnp(pthread_t*, FILE*, uintptr_t, char*, char*, uint32_t, double, uint32_t, uint32_t, Range_list*, Range_list*, double, double, double, double, uintptr_t, uintptr_t*, uintptr_t, char*, uintptr_t, uintptr_t*, char*, char*, Chrom_info*, uintptr_t, uintptr_t, uintptr_t*, uint32_t, uint32_t*, uint32_t*, uint32_t, uint32_t, uintptr_t*, double*, uintptr_t, char*, uintptr_t, uintptr_t*, double*, uintptr_t*, uintptr_t*, uint32_t, uint32_t, Set_info*)' at plink_glm.c:7845:8:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:34:33: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' reading 17 bytes from a region of size 16 [-Wstringop-overflow=]
34 | return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_lasso.c -o plink_lasso.o
In function 'void* memcpy(void*, const void*, size_t)',
inlined from 'int32_t glm_logistic_nosnp(pthread_t*, FILE*, uintptr_t, char*, char*, uint32_t, double, uint32_t, uint32_t, Range_list*, Range_list*, double, double, double, double, uintptr_t, uintptr_t*, uintptr_t, char*, uintptr_t, uintptr_t*, char*, char*, Chrom_info*, uintptr_t, uintptr_t, uintptr_t*, uint32_t, uint32_t*, uint32_t*, uint32_t, uint32_t, uintptr_t*, uintptr_t*, uintptr_t, char*, uintptr_t, uintptr_t*, double*, uintptr_t*, uintptr_t*, uint32_t, uint32_t, Set_info*)' at plink_glm.c:8629:8:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:34:33: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' reading 17 bytes from a region of size 16 [-Wstringop-overflow=]
34 | return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_ld.c -o plink_ld.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_matrix.c -o plink_matrix.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_misc.c -o plink_misc.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_perm.c -o plink_perm.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_rserve.c -o plink_rserve.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_set.c -o plink_set.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security plink_stats.c -o plink_stats.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security SFMT.c -o SFMT.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security dcdflib.c -o dcdflib.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security pigz.c -o pigz.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security yarn.c -o yarn.o
g++ -x c++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security Rconnection.cc -o Rconnection.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security hfile.c -o hfile.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security bgzf.c -o bgzf.o
g++ plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o -L/usr/lib64/atlas -llapack -lblas -lcblas -latlas -lm -lpthread -ldl `dpkg-buildflags --get LDFLAGS` -L. -lz -o plink
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
mv plink plink1.9
help2man --no-discard-stderr --name="whole genome SNP analysis" ./plink1.9 > plink1.9.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_install -a
dh_installdocs -a
debian/rules override_dh_installchangelogs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installchangelogs debian/upstream.docs/upstream.changelog
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installexamples -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installman plink1.9.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/plink1.9/usr/lib/debian-med/bin/plink1.9 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/plink1.9/usr/lib/debian-med/bin/plink1.9 was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'plink1.9' in '../plink1.9_1.90~b6.11-191024-1_armhf.deb'.
dpkg-deb: building package 'plink1.9-dbgsym' in '../plink1.9-dbgsym_1.90~b6.11-191024-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian 2019 test autobuilder <root@raspbian.org> >../plink1.9_1.90~b6.11-191024-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-10-28T05:13:02Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
plink1.9_1.90~b6.11-191024-1_armhf.changes:
-------------------------------------------
Format: 1.8
Date: Fri, 25 Oct 2019 22:53:20 +0200
Source: plink1.9
Binary: plink1.9 plink1.9-dbgsym
Architecture: armhf
Version: 1.90~b6.11-191024-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian 2019 test autobuilder <root@raspbian.org>
Changed-By: Dylan Aïssi <daissi@debian.org>
Description:
plink1.9 - whole-genome association analysis toolset
Changes:
plink1.9 (1.90~b6.11-191024-1) unstable; urgency=medium
.
* New upstream release.
* Bump Standards-Version: 4.4.1 (no changes needed).
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Files:
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: plink1.9
Binary: plink1.9
Architecture: armhf
Version: 1.90~b6.11-191024-1
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Mon, 28 Oct 2019 05:13:00 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.69-11),
automake (= 1:1.16.1-4),
autopoint (= 0.19.8.1-9),
autotools-dev (= 20180224.1),
base-files (= 11+rpi1),
base-passwd (= 3.5.46),
bash (= 5.0-4),
binutils (= 2.32.51.20190909-1+rpi1),
binutils-arm-linux-gnueabihf (= 2.32.51.20190909-1+rpi1),
binutils-common (= 2.32.51.20190909-1+rpi1),
bsdmainutils (= 11.1.2),
bsdutils (= 1:2.34-0.1),
build-essential (= 12.8),
bzip2 (= 1.0.8-2),
coreutils (= 8.30-3),
cpp (= 4:9.2.1-3+rpi1),
cpp-9 (= 9.2.1-8+rpi1),
dash (= 0.5.10.2-6),
debconf (= 1.5.73),
debhelper (= 12.7.1),
debianutils (= 4.9),
dh-autoreconf (= 19),
dh-strip-nondeterminism (= 1.6.1-1),
diffutils (= 1:3.7-3),
dpkg (= 1.19.7),
dpkg-dev (= 1.19.7),
dwz (= 0.13-1),
fdisk (= 2.34-0.1),
file (= 1:5.37-6),
findutils (= 4.7.0-1),
g++ (= 4:9.2.1-3+rpi1),
g++-9 (= 9.2.1-8+rpi1),
gcc (= 4:9.2.1-3+rpi1),
gcc-9 (= 9.2.1-8+rpi1),
gcc-9-base (= 9.2.1-8+rpi1),
gettext (= 0.19.8.1-9),
gettext-base (= 0.19.8.1-9),
grep (= 3.3-1),
groff-base (= 1.22.4-3),
gzip (= 1.9-3),
help2man (= 1.47.11),
hostname (= 3.22),
init-system-helpers (= 1.57),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.2.53-5),
libarchive-zip-perl (= 1.67-1),
libasan5 (= 9.2.1-8+rpi1),
libatlas-base-dev (= 3.10.3-8+rpi1),
libatlas3-base (= 3.10.3-8+rpi1),
libatomic1 (= 9.2.1-8+rpi1),
libattr1 (= 1:2.4.48-5),
libaudit-common (= 1:2.8.5-2),
libaudit1 (= 1:2.8.5-2),
libbinutils (= 2.32.51.20190909-1+rpi1),
libblkid1 (= 2.34-0.1),
libbsd0 (= 0.10.0-1),
libbz2-1.0 (= 1.0.8-2),
libc-bin (= 2.29-2+rpi1),
libc-dev-bin (= 2.29-2+rpi1),
libc6 (= 2.29-2+rpi1),
libc6-dev (= 2.29-2+rpi1),
libcap-ng0 (= 0.7.9-2),
libcc1-0 (= 9.2.1-8+rpi1),
libcroco3 (= 0.6.13-1),
libdb5.3 (= 5.3.28+dfsg1-0.6),
libdebconfclient0 (= 0.249),
libdebhelper-perl (= 12.7.1),
libdpkg-perl (= 1.19.7),
libelf1 (= 0.176-1.1),
libfdisk1 (= 2.34-0.1),
libffi6 (= 3.2.1-9),
libfile-stripnondeterminism-perl (= 1.6.1-1),
libgcc-9-dev (= 9.2.1-8+rpi1),
libgcc1 (= 1:9.2.1-8+rpi1),
libgcrypt20 (= 1.8.5-3),
libgdbm-compat4 (= 1.18.1-5),
libgdbm6 (= 1.18.1-5),
libgfortran5 (= 9.2.1-8+rpi1),
libglib2.0-0 (= 2.62.1-1),
libgmp10 (= 2:6.1.2+dfsg-4),
libgomp1 (= 9.2.1-8+rpi1),
libgpg-error0 (= 1.36-7),
libicu63 (= 63.2-2),
libisl21 (= 0.21-2),
liblapack-dev (= 3.8.0-7),
liblapack3 (= 3.8.0-7),
liblocale-gettext-perl (= 1.07-3+b5),
liblz4-1 (= 1.9.1-2),
liblzma5 (= 5.2.4-1),
libmagic-mgc (= 1:5.37-6),
libmagic1 (= 1:5.37-6),
libmount1 (= 2.34-0.1),
libmpc3 (= 1.1.0-1),
libmpfr6 (= 4.0.2-1),
libncurses6 (= 6.1+20190803-1),
libncursesw6 (= 6.1+20190803-1),
libpam-modules (= 1.3.1-5),
libpam-modules-bin (= 1.3.1-5),
libpam-runtime (= 1.3.1-5),
libpam0g (= 1.3.1-5),
libpcre2-8-0 (= 10.32-5),
libpcre3 (= 2:8.39-12),
libperl5.30 (= 5.30.0-7),
libpipeline1 (= 1.5.1-2),
libseccomp2 (= 2.4.1-2+rpi1),
libselinux1 (= 2.9-2),
libsigsegv2 (= 2.12-2),
libsmartcols1 (= 2.34-0.1),
libstdc++-9-dev (= 9.2.1-8+rpi1),
libstdc++6 (= 9.2.1-8+rpi1),
libsub-override-perl (= 0.09-2),
libsystemd0 (= 242-7+rpi1),
libtinfo5 (= 6.1+20190803-1),
libtinfo6 (= 6.1+20190803-1),
libtool (= 2.4.6-11),
libubsan1 (= 9.2.1-8+rpi1),
libuchardet0 (= 0.0.6-3),
libudev1 (= 242-7+rpi1),
libunistring2 (= 0.9.10-2),
libuuid1 (= 2.34-0.1),
libxml2 (= 2.9.4+dfsg1-7+b2),
linux-libc-dev (= 5.2.17-1+rpi1+b2),
login (= 1:4.7-2),
lsb-base (= 11.1.0+rpi1),
m4 (= 1.4.18-2),
make (= 4.2.1-1.2),
man-db (= 2.8.7-3),
mawk (= 1.3.3-17),
ncurses-base (= 6.1+20190803-1),
ncurses-bin (= 6.1+20190803-1),
patch (= 2.7.6-6),
perl (= 5.30.0-7),
perl-base (= 5.30.0-7),
perl-modules-5.30 (= 5.30.0-7),
po-debconf (= 1.0.21),
sed (= 4.7-1),
sensible-utils (= 0.0.12),
sysvinit-utils (= 2.96~beta-3),
tar (= 1.30+dfsg-6),
util-linux (= 2.34-0.1),
xz-utils (= 5.2.4-1),
zlib1g (= 1:1.2.11.dfsg-1),
zlib1g-dev (= 1:1.2.11.dfsg-1)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LC_ALL="POSIX"
SOURCE_DATE_EPOCH="1572036800"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
plink1.9-dbgsym_1.90~b6.11-191024-1_armhf.deb
---------------------------------------------
new Debian package, version 2.0.
size 2690620 bytes: control archive=548 bytes.
399 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: plink1.9-dbgsym
Source: plink1.9
Version: 1.90~b6.11-191024-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2762
Depends: plink1.9 (= 1.90~b6.11-191024-1)
Section: debug
Priority: optional
Description: debug symbols for plink1.9
Build-Ids: fe0c5edfccc3c0800a0a1c476e22458ec77266d2
drwxr-xr-x root/root 0 2019-10-25 20:53 ./
drwxr-xr-x root/root 0 2019-10-25 20:53 ./usr/
drwxr-xr-x root/root 0 2019-10-25 20:53 ./usr/lib/
drwxr-xr-x root/root 0 2019-10-25 20:53 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-10-25 20:53 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-10-25 20:53 ./usr/lib/debug/.build-id/fe/
-rw-r--r-- root/root 2817120 2019-10-25 20:53 ./usr/lib/debug/.build-id/fe/0c5edfccc3c0800a0a1c476e22458ec77266d2.debug
drwxr-xr-x root/root 0 2019-10-25 20:53 ./usr/share/
drwxr-xr-x root/root 0 2019-10-25 20:53 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-10-25 20:53 ./usr/share/doc/plink1.9-dbgsym -> plink1.9
plink1.9_1.90~b6.11-191024-1_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 733820 bytes: control archive=1340 bytes.
1250 bytes, 25 lines control
897 bytes, 12 lines md5sums
Package: plink1.9
Version: 1.90~b6.11-191024-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1777
Depends: libblas3 | libblas.so.3, libc6 (>= 2.29), libgcc1 (>= 1:3.5), liblapack3 | liblapack.so.3, libstdc++6 (>= 5), zlib1g (>= 1:1.2.6)
Section: science
Priority: optional
Homepage: https://www.cog-genomics.org/plink/1.9/
Description: whole-genome association analysis toolset
plink expects as input the data from SNP (single nucleotide polymorphism)
chips of many individuals and their phenotypical description of a disease.
It finds associations of single or pairs of DNA variations with a phenotype
and can retrieve SNP annotation from an online source.
.
SNPs can evaluated individually or as pairs for their association with the
disease phenotypes. The joint investigation of copy number variations is
supported. A variety of statistical tests have been implemented.
.
plink1.9 is a comprehensive update of plink with new algorithms and new
methods, faster and less memory consumer than the first plink.
.
Please note: The executable was renamed to plink1.9
because of a name clash. Please read more about this
in /usr/share/doc/plink1.9/README.Debian.
drwxr-xr-x root/root 0 2019-10-25 20:53 ./
drwxr-xr-x root/root 0 2019-10-25 20:53 ./usr/
drwxr-xr-x root/root 0 2019-10-25 20:53 ./usr/bin/
lrwxrwxrwx root/root 0 2019-10-25 20:53 ./usr/bin/plink1.9 -> ../lib/debian-med/bin/plink1.9
drwxr-xr-x root/root 0 2019-10-25 20:53 ./usr/lib/
drwxr-xr-x root/root 0 2019-10-25 20:53 ./usr/lib/debian-med/
drwxr-xr-x root/root 0 2019-10-25 20:53 ./usr/lib/debian-med/bin/
-rwxr-xr-x root/root 1739460 2019-10-25 20:53 ./usr/lib/debian-med/bin/plink1.9
drwxr-xr-x root/root 0 2019-10-25 20:53 ./usr/lib/debian-med/share/
drwxr-xr-x root/root 0 2019-10-25 20:53 ./usr/lib/debian-med/share/man/
drwxr-xr-x root/root 0 2019-10-25 20:53 ./usr/lib/debian-med/share/man/man1/
lrwxrwxrwx root/root 0 2019-10-25 20:53 ./usr/lib/debian-med/share/man/man1/plink1.9.1.gz -> ../../../../../share/man/man1/plink1.9.1.gz
drwxr-xr-x root/root 0 2019-10-25 20:53 ./usr/share/
drwxr-xr-x root/root 0 2019-10-25 20:53 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-10-25 20:53 ./usr/share/doc/plink1.9/
-rw-r--r-- root/root 680 2019-10-25 20:53 ./usr/share/doc/plink1.9/README.Debian
-rw-r--r-- root/root 2846 2019-10-25 20:53 ./usr/share/doc/plink1.9/changelog.Debian.gz
-rw-r--r-- root/root 13433 2019-10-25 20:53 ./usr/share/doc/plink1.9/changelog.gz
-rw-r--r-- root/root 7739 2019-10-25 20:53 ./usr/share/doc/plink1.9/copyright
drwxr-xr-x root/root 0 2019-10-25 20:53 ./usr/share/doc/plink1.9/examples/
-rw-r--r-- root/root 325 2019-10-25 20:53 ./usr/share/doc/plink1.9/examples/README
-rw-r--r-- root/root 267 2019-10-25 20:53 ./usr/share/doc/plink1.9/examples/expected.plink.assoc
-rw-r--r-- root/root 126 2019-10-25 20:53 ./usr/share/doc/plink1.9/examples/expected.plink.frq
-rw-r--r-- root/root 550 2019-10-25 20:53 ./usr/share/doc/plink1.9/examples/run-sample-analysis
-rw-r--r-- root/root 27 2019-10-25 20:53 ./usr/share/doc/plink1.9/examples/toy.map
-rw-r--r-- root/root 58 2019-10-25 20:53 ./usr/share/doc/plink1.9/examples/toy.ped
drwxr-xr-x root/root 0 2019-10-25 20:53 ./usr/share/man/
drwxr-xr-x root/root 0 2019-10-25 20:53 ./usr/share/man/man1/
-rw-r--r-- root/root 28340 2019-10-25 20:53 ./usr/share/man/man1/plink1.9.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 37444
Build-Time: 336
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 316
Job: plink1.9_1.90~b6.11-191024-1
Machine Architecture: armhf
Package: plink1.9
Package-Time: 709
Source-Version: 1.90~b6.11-191024-1
Space: 37444
Status: successful
Version: 1.90~b6.11-191024-1
--------------------------------------------------------------------------------
Finished at 2019-10-28T05:13:02Z
Build needed 00:11:49, 37444k disk space