plink1.9 →
1.90~b3b-150117-1 →
armhf → 2015-07-10 12:06:01
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bm-wb-03
╔══════════════════════════════════════════════════════════════════════════════╗
║ plink1.9 1.90~b3b-150117-1 (armhf) 10 Jul 2015 11:48 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: plink1.9
Version: 1.90~b3b-150117-1
Source Version: 1.90~b3b-150117-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/plink1.9-G15waX/plink1.9-1.90~b3b-150117' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/plink1.9-G15waX' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-f7c32ae5-9004-436a-ab4b-d6d86bdc7a1e' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
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Get:1 http://172.17.0.1 stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 stretch-staging/main Sources [8074 kB]
Get:3 http://172.17.0.1 stretch-staging/main armhf Packages [9922 kB]
Ign http://172.17.0.1 stretch-staging/main Translation-en
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Building dependency tree...
NOTICE: 'plink1.9' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/plink1.9.git
Need to get 678 kB of source archives.
Get:1 http://172.17.0.1/private/ stretch-staging/main plink1.9 1.90~b3b-150117-1 (dsc) [2067 B]
Get:2 http://172.17.0.1/private/ stretch-staging/main plink1.9 1.90~b3b-150117-1 (tar) [668 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main plink1.9 1.90~b3b-150117-1 (diff) [7748 B]
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-1SC0NL/apt_archive/sbuild-build-depends-core-dummy.deb'.
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
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Building dependency tree...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 79 not upgraded.
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Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9.0.0), help2man, libatlas-base-dev, liblapack-dev, zlib1g-dev
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9.0.0), help2man, libatlas-base-dev, liblapack-dev, zlib1g-dev
dpkg-deb: building package `sbuild-build-depends-plink1.9-dummy' in `/«BUILDDIR»/resolver-5DqXRu/apt_archive/sbuild-build-depends-plink1.9-dummy.deb'.
OK
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install plink1.9 build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils debhelper file gcc-5-base gettext gettext-base groff-base
help2man intltool-debian libasprintf0c2 libatlas-base-dev libatlas-dev
libatlas3-base libblas-common libblas-dev libblas3 libcroco3 libffi6
libgfortran3 libglib2.0-0 liblapack-dev liblapack3 libmagic1 libpipeline1
libunistring0 libxml2 man-db po-debconf zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation dh-make gettext-doc groff libblas-doc
liblapack-doc less www-browser libmail-box-perl
Recommended packages:
curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
libglib2.0-data shared-mime-info xdg-user-dirs xml-core
libmail-sendmail-perl
The following NEW packages will be installed:
bsdmainutils debhelper file gcc-5-base gettext gettext-base groff-base
help2man intltool-debian libasprintf0c2 libatlas-base-dev libatlas-dev
libatlas3-base libblas-common libblas-dev libblas3 libcroco3 libffi6
libgfortran3 libglib2.0-0 liblapack-dev liblapack3 libmagic1 libpipeline1
libunistring0 libxml2 man-db po-debconf sbuild-build-depends-plink1.9-dummy
zlib1g-dev
0 upgraded, 30 newly installed, 0 to remove and 79 not upgraded.
Need to get 16.3 MB/16.3 MB of archives.
After this operation, 67.8 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ stretch-staging/main libpipeline1 armhf 1.4.0-1 [24.0 kB]
Get:2 http://172.17.0.1/private/ stretch-staging/main groff-base armhf 1.22.3-1 [1085 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main bsdmainutils armhf 9.0.6 [177 kB]
Get:4 http://172.17.0.1/private/ stretch-staging/main man-db armhf 2.7.0.2-5 [972 kB]
Get:5 http://172.17.0.1/private/ stretch-staging/main libasprintf0c2 armhf 0.19.4-1 [31.5 kB]
Get:6 http://172.17.0.1/private/ stretch-staging/main libmagic1 armhf 1:5.22+15-2 [244 kB]
Get:7 http://172.17.0.1/private/ stretch-staging/main libxml2 armhf 2.9.1+dfsg1-5 [703 kB]
Get:8 http://172.17.0.1/private/ stretch-staging/main libffi6 armhf 3.1-2 [18.1 kB]
Get:9 http://172.17.0.1/private/ stretch-staging/main libglib2.0-0 armhf 2.44.1-1.1 [2312 kB]
Get:10 http://172.17.0.1/private/ stretch-staging/main libcroco3 armhf 0.6.8-3 [121 kB]
Get:11 http://172.17.0.1/private/ stretch-staging/main gcc-5-base armhf 5.1.1-12+rpi1 [165 kB]
Get:12 http://172.17.0.1/private/ stretch-staging/main libgfortran3 armhf 5.1.1-12+rpi1 [154 kB]
Get:13 http://172.17.0.1/private/ stretch-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:14 http://172.17.0.1/private/ stretch-staging/main file armhf 1:5.22+15-2 [59.9 kB]
Get:15 http://172.17.0.1/private/ stretch-staging/main gettext-base armhf 0.19.4-1 [117 kB]
Get:16 http://172.17.0.1/private/ stretch-staging/main gettext armhf 0.19.4-1 [1168 kB]
Get:17 http://172.17.0.1/private/ stretch-staging/main intltool-debian all 0.35.0+20060710.2 [25.9 kB]
Get:18 http://172.17.0.1/private/ stretch-staging/main po-debconf all 1.0.18 [248 kB]
Get:19 http://172.17.0.1/private/ stretch-staging/main debhelper all 9.20150628 [817 kB]
Get:20 http://172.17.0.1/private/ stretch-staging/main help2man armhf 1.47.1 [150 kB]
Get:21 http://172.17.0.1/private/ stretch-staging/main libblas-common armhf 1.2.20110419-10 [8494 B]
Get:22 http://172.17.0.1/private/ stretch-staging/main libatlas3-base armhf 3.10.2-7+rpi1 [1841 kB]
Get:23 http://172.17.0.1/private/ stretch-staging/main libblas3 armhf 1.2.20110419-10 [120 kB]
Get:24 http://172.17.0.1/private/ stretch-staging/main libblas-dev armhf 1.2.20110419-10 [117 kB]
Get:25 http://172.17.0.1/private/ stretch-staging/main libatlas-dev all 3.10.2-7+rpi1 [65.0 kB]
Get:26 http://172.17.0.1/private/ stretch-staging/main libatlas-base-dev armhf 3.10.2-7+rpi1 [2462 kB]
Get:27 http://172.17.0.1/private/ stretch-staging/main liblapack3 armhf 3.5.0-4 [1316 kB]
Get:28 http://172.17.0.1/private/ stretch-staging/main liblapack-dev armhf 3.5.0-4 [1364 kB]
Get:29 http://172.17.0.1/private/ stretch-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-2 [199 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libpipeline1:armhf (1.4.0-1) ...
Setting up groff-base (1.22.3-1) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up man-db (2.7.0.2-5) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libasprintf0c2:armhf (0.19.4-1) ...
Setting up libmagic1:armhf (1:5.22+15-2) ...
Setting up libxml2:armhf (2.9.1+dfsg1-5) ...
Setting up libffi6:armhf (3.1-2) ...
Setting up libglib2.0-0:armhf (2.44.1-1.1) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.8-3) ...
Setting up gcc-5-base:armhf (5.1.1-12+rpi1) ...
Setting up libgfortran3:armhf (5.1.1-12+rpi1) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up file (1:5.22+15-2) ...
Setting up gettext-base (0.19.4-1) ...
Setting up gettext (0.19.4-1) ...
Setting up intltool-debian (0.35.0+20060710.2) ...
Setting up po-debconf (1.0.18) ...
Setting up debhelper (9.20150628) ...
Setting up help2man (1.47.1) ...
Setting up libblas-common (1.2.20110419-10) ...
Setting up libatlas3-base (3.10.2-7+rpi1) ...
update-alternatives: using /usr/lib/atlas-base/atlas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
update-alternatives: using /usr/lib/atlas-base/atlas/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up libblas3 (1.2.20110419-10) ...
Setting up libblas-dev (1.2.20110419-10) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libatlas-dev (3.10.2-7+rpi1) ...
Setting up libatlas-base-dev (3.10.2-7+rpi1) ...
update-alternatives: using /usr/lib/atlas-base/atlas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
update-alternatives: using /usr/lib/atlas-base/atlas/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up liblapack3 (3.5.0-4) ...
Setting up liblapack-dev (3.5.0-4) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2) ...
Setting up sbuild-build-depends-plink1.9-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.19-18) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25-5 dpkg-dev_1.17.25 g++-4.9_4.9.2-10 gcc-4.9_4.9.2-10 libc6-dev_2.19-18 libstdc++-4.9-dev_4.9.2-10 libstdc++6_4.9.2-10 linux-libc-dev_3.16.7-ckt4-1+rpi1
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.9.8 base-files_8+rpi1 base-passwd_3.5.37 bash_4.3-11 binutils_2.25-5 bsdmainutils_9.0.6 bsdutils_1:2.25.2-6 build-essential_11.7 bzip2_1.0.6-7 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:4.9.2-2 cpp-4.9_4.9.2-10 dash_0.5.7-4 debconf_1.5.56 debconf-i18n_1.5.56 debfoster_2.7-2 debhelper_9.20150628 debianutils_4.4 diffutils_1:3.3-1 dmsetup_2:1.02.90-2.2 dpkg_1.17.25 dpkg-dev_1.17.25 e2fslibs_1.42.12-1.1 e2fsprogs_1.42.12-1.1 fakeroot_1.20.2-1 file_1:5.22+15-2 findutils_4.4.2-9 g++_4:4.9.2-2 g++-4.9_4.9.2-10 gcc_4:4.9.2-2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.4-1 gcc-4.9_4.9.2-10 gcc-4.9-base_4.9.2-10 gcc-5-base_5.1.1-12+rpi1 gettext_0.19.4-1 gettext-base_0.19.4-1 gnupg_1.4.18-7 gpgv_1.4.18-7 grep_2.20-4.1 groff-base_1.22.3-1 gzip_1.6-4 help2man_1.47.1 hostname_3.15 init_1.22 init-system-helpers_1.22 initramfs-tools_0.120 initscripts_2.88dsf-59 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.2 klibc-utils_2.0.4-2+rpi1 kmod_18-3 libacl1_2.2.52-2 libapt-pkg4.12_1.0.9.8 libasan1_4.9.2-10 libasprintf0c2_0.19.4-1 libatlas-base-dev_3.10.2-7+rpi1 libatlas-dev_3.10.2-7+rpi1 libatlas3-base_3.10.2-7+rpi1 libatomic1_4.9.2-10 libattr1_1:2.4.47-2 libaudit-common_1:2.4-1 libaudit1_1:2.4-1 libblas-common_1.2.20110419-10 libblas-dev_1.2.20110419-10 libblas3_1.2.20110419-10 libblkid1_2.25.2-6 libbz2-1.0_1.0.6-7 libc-bin_2.19-18 libc-dev-bin_2.19-18 libc6_2.19-18 libc6-dev_2.19-18 libcap2_1:2.24-8 libcap2-bin_1:2.24-8 libcloog-isl4_0.18.2-1 libcomerr2_1.42.12-1.1 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5 libdb5.3_5.3.28-9 libdbus-1-3_1.8.16-1 libdebconfclient0_0.192 libdevmapper1.02.1_2:1.02.90-2.2 libdpkg-perl_1.17.25 libdrm2_2.4.58-2 libfakeroot_1.20.2-1 libffi6_3.1-2 libgc1c2_1:7.2d-6.4 libgcc-4.9-dev_4.9.2-10 libgcc1_1:4.9.2-10 libgcrypt20_1.6.3-2 libgdbm3_1.8.3-13.1 libgfortran3_5.1.1-12+rpi1 libglib2.0-0_2.44.1-1.1 libgmp10_2:6.0.0+dfsg-6+rpi1 libgomp1_4.9.2-10 libgpg-error0_1.17-3 libisl10_0.12.2-2 libklibc_2.0.4-2+rpi1 libkmod2_18-3 liblapack-dev_3.5.0-4 liblapack3_3.5.0-4 liblocale-gettext-perl_1.05-8+b1 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.22+15-2 libmount1_2.25.2-6 libmpc3_1.0.2-1 libmpfr4_3.1.2-2 libncurses5_5.9+20140913-1 libncursesw5_5.9+20140913-1 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-3.3 libpipeline1_1.4.0-1 libpng12-0_1.2.50-2 libprocps3_2:3.3.9-9 libreadline6_6.3-8 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libslang2_2.3.0-2 libsmartcols1_2.25.2-6 libss2_1.42.12-1.1 libstdc++-4.9-dev_4.9.2-10 libstdc++6_4.9.2-10 libsystemd0_215-17 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_2.3000-2 libtinfo5_5.9+20140913-1 libubsan0_4.9.2-10 libudev1_215-17 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-25 libustr-1.0-1_1.0.4-3 libuuid1_2.25.2-6 libxml2_2.9.1+dfsg1-5 linux-libc-dev_3.16.7-ckt4-1+rpi1 login_1:4.2-3 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.1 makedev_2.3.1-93 man-db_2.7.0.2-5 mawk_1.3.3-17 mount_2.25.2-6 mountall_2.54 multiarch-support_2.19-18 ncurses-base_5.9+20140913-1 ncurses-bin_5.9+20140913-1 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-3 perl-base_5.20.2-3 perl-modules_5.20.2-3 plymouth_0.9.0-9 po-debconf_1.0.18 procps_2:3.3.9-9 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-plink1.9-dummy_0.invalid.0 sed_4.2.2-4 sensible-utils_0.0.9 startpar_0.59-3 systemd_215-17 systemd-sysv_215-17 sysv-rc_2.88dsf-59 sysvinit-utils_2.88dsf-59 tar_1.27.1-2 tzdata_2015c-1 udev_215-17 util-linux_2.25.2-6 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-2 zlib1g-dev_1:1.2.8.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Tue Feb 17 13:07:24 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./plink1.9_1.90~b3b-150117-1.dsc
dpkg-source: info: extracting plink1.9 in plink1.9-1.90~b3b-150117
dpkg-source: info: unpacking plink1.9_1.90~b3b-150117.orig.tar.xz
dpkg-source: info: unpacking plink1.9_1.90~b3b-150117-1.debian.tar.xz
dpkg-source: info: applying 01_Fix_use_internal_lib.patch
dpkg-source: info: applying 02_Activate_Stable_Build.patch
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-f7c32ae5-9004-436a-ab4b-d6d86bdc7a1e
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package plink1.9
dpkg-buildpackage: source version 1.90~b3b-150117-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build plink1.9-1.90~b3b-150117
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_testdir
debian/rules override_dh_auto_clean
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_auto_clean
rm -f plink1.9
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/«PKGBUILDDIR»'
/usr/bin/make CFLAGS='-Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro'
make[2]: Entering directory '/«PKGBUILDDIR»'
g++ -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro plink.c plink_assoc.c plink_calc.c plink_cluster.c plink_cnv.c plink_common.c plink_data.c plink_dosage.c plink_family.c plink_filter.c plink_glm.c plink_help.c plink_homozyg.c plink_lasso.c plink_ld.c plink_matrix.c plink_misc.c plink_rserve.c plink_set.c plink_stats.c SFMT.c dcdflib.c pigz.c yarn.c Rconnection.cc -o plink -llapack -lcblas -latlas -lm -lpthread -ldl -lz
In file included from plink.c:19:0:
plink.c: In function 'int32_t plink(char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, Two_col_params*, Two_col_params*, char*, char*, char*, char*, Two_col_params*, Two_col_params*, Two_col_params*, Two_col_params*, Two_col_params*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, uint32_t, double, double, double, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, int32_t, char*, uint32_t, uint32_t, Chrom_info*, Oblig_missing_info*, Family_info*, double, double, uint32_t, uint32_t, double, double, double, double, double, double, double, double, long long unsigned int, long long unsigned int, long long unsigned int, uint32_t, long unsigned int, uint32_t, long unsigned int, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, double, double, Homozyg_info*, Cluster_info*, uint32_t, uint32_t, Set_info*, Ld_info*, Epi_info*, Clump_info*, Rel_info*, Score_info*, uint32_t, uint32_t, uint32_t, uint32_t, int32_t, int32_t, int32_t, char*, char*, char*, Range_list*, uint32_t, uint32_t, Range_list*, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, double, uint32_t, uint32_t, Range_list*, Range_list*, double, double, double, uint32_t, double, uint32_t, Aperm_info*, uint32_t, long unsigned int, uint32_t, double, double, Range_list*, uint32_t, uint32_t, uint32_t, Ll_str**)':
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink.c:618:7: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("%" PRIuPTR " %s (%u male%s, %u female%s, %u ambiguous) loaded from .fam.\n", unfiltered_sample_ct, species_str(unfiltered_sample_ct), uii, (uii == 1)? "" : "s", ujj, (ujj == 1)? "" : "s", gender_unk_ct);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink.c:624:7: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("%" PRIuPTR " %s (%d male%s, %d female%s) loaded from .fam.\n", unfiltered_sample_ct, species_str(unfiltered_sample_ct), uii, (uii == 1)? "" : "s", ujj, (ujj == 1)? "" : "s");
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink.c:811:2: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--extract range: %" PRIuPTR " variant%s remaining.\n", uljj, (uljj == 1)? "" : "s");
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink.c:830:2: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--exclude range: %" PRIuPTR " variant%s remaining.\n", uljj, (uljj == 1)? "" : "s");
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink.c:1036:7: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--prune: %" PRIuPTR " %s remaining.\n", unfiltered_sample_ct - sample_exclude_ct, species_str(unfiltered_sample_ct == sample_exclude_ct + 1));
^
plink.c:1108:125: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Too many --parallel jobs (maximum %" PRIuPTR "/2 = %" PRIuPTR ").\n", sample_ct, sample_ct / 2);
^
plink.c:1108:125: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
In file included from plink.c:19:0:
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink.c:1193:5: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("Before main variant filters, %" PRIuPTR " founder%s and %" PRIuPTR " nonfounder%s present.\n", ulii, (ulii == 1)? "" : "s", sample_ct - ulii, (sample_ct - ulii == 1)? "" : "s");
^
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink.c:1193:5: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("Before main variant filters, %" PRIuPTR " founder%s and %" PRIuPTR " nonfounder%s present.\n", ulii, (ulii == 1)? "" : "s", sample_ct - ulii, (sample_ct - ulii == 1)? "" : "s");
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink.c:1281:7: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("%" PRIuPTR " variant%s removed due to missing genotype data (--geno).\n", ulii, (ulii == 1)? "" : "s");
^
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink.c:1354:7: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("%" PRIuPTR " variant%s and %" PRIuPTR " %s pass filters and QC%s.\n", marker_ct, (marker_ct == 1)? "" : "s", sample_ct, species_str(sample_ct), (calculation_type & CALC_REL_CUTOFF)? " (before --rel-cutoff)": "");
^
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink.c:1354:7: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("%" PRIuPTR " variant%s and %" PRIuPTR " %s pass filters and QC%s.\n", marker_ct, (marker_ct == 1)? "" : "s", sample_ct, species_str(sample_ct), (calculation_type & CALC_REL_CUTOFF)? " (before --rel-cutoff)": "");
^
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink.c:1356:7: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("%" PRIuPTR " variant%s filters and QC.\n", marker_ct, (marker_ct == 1)? " passes" : "s pass");
^
plink.c:1364:339: warning: format '%u' expects argument of type 'unsigned int', but argument 7 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Among remaining phenotypes, %u %s and %u %s. (%" PRIuPTR " phenotype%s missing.)\n", pheno_nm_ct - pheno_ctrl_ct, (pheno_nm_ct - pheno_ctrl_ct == 1)? "is a case" : "are cases", pheno_ctrl_ct, (pheno_ctrl_ct == 1)? "is a control" : "are controls", sample_ct - pheno_nm_ct, (sample_ct - pheno_nm_ct == 1)? " is" : "s are");
^
In file included from plink.c:19:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink.c:1433:2: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--pca-cluster-names/--pca-clusters: %" PRIuPTR " samples specified.\n", pca_sample_ct);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 8 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink.c:1960:11: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("%s has %u case%s, %u control%s, and %" PRIuPTR " missing phenotype%s.\n", &(outname_end[1]), ujj, (ujj == 1)? "" : "s", ukk, (ukk == 1)? "" : "s", ulii, (ulii == 1)? "" : "s");
^
plink.c: In function 'int32_t main(int32_t, char**)':
plink.c:12810:121: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=]
sprintf(logbuf, "%" PRId64 " MB RAM detected; reserving %" PRIdPTR " MB for main workspace.\n", llxx, malloc_size_mb);
^
plink.c:12812:115: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=]
sprintf(logbuf, "Failed to calculate system memory. Attempting to reserve %" PRIdPTR " MB.\n", malloc_size_mb);
^
In file included from plink.c:19:0:
plink_common.h:792:51: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink.c:12823:7: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Allocated %" PRIdPTR " MB successfully, after larger attempt(s) failed.\n", malloc_size_mb);
^
plink.c:3507:38: warning: ignoring return value of 'FILE* freopen(const char*, const char*, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
freopen("/dev/null", "w", stdout);
^
plink.c:3854:26: warning: ignoring return value of 'char* getcwd(char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
getcwd(tbuf, FNAMESIZE);
^
In file included from plink_assoc.c:1:0:
plink_assoc.c: In function 'int32_t multcomp(char*, char*, uint32_t*, long unsigned int, char*, long unsigned int, uint32_t, Chrom_info*, double*, double, double, uint32_t, uint32_t, double, uint32_t*, double*)':
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_assoc.c:546:3: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("--adjust values (%" PRIuPTR " %s%s) written to %s .\n", chi_ct, is_set_test? "nonempty set" : "variant", (chi_ct == 1)? "" : "s", outname);
^
plink_assoc.c: In function 'int32_t testmiss(pthread_t*, FILE*, long unsigned int, char*, char*, uint32_t, uint32_t, double, double, uint32_t, double, long unsigned int, long unsigned int*, long unsigned int, char*, long unsigned int, uint32_t, Chrom_info*, long unsigned int, uint32_t, uint32_t*, uint32_t*, Aperm_info*, uint32_t, uint32_t, long unsigned int*, long unsigned int*, long unsigned int*, uint32_t)':
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_assoc.c:11162:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Including %" PRIuPTR " loc%s in --test-missing permutation test.\n", marker_ct, (marker_ct == 1)? "us" : "i");
^
plink_calc.c: In function 'void ibs_test_range(uint32_t, long unsigned int*, double*)':
plink_calc.c:1192:34: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=]
printf("\b\b%" PRIuPTR "%%", pct);
^
plink_calc.c: In function 'void* groupdist_jack_thread(void*)':
plink_calc.c:2127:38: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=]
printf("\r%" PRIuPTR "%%", uljj);
^
plink_calc.c: In function 'void* regress_rel_jack_thread(void*)':
plink_calc.c:2221:38: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=]
printf("\r%" PRIuPTR "%%", uljj);
^
In file included from plink_calc.c:73:0:
plink_calc.c: In function 'int32_t unrelated_herit_batch(uint32_t, char*, char*, uint32_t, char*, int32_t, Rel_info*)':
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_calc.c:2716:7: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, grmname);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_calc.c:2727:7: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s has fewer tokens than expected.\n", line_idx, grmname);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_calc.c:2905:3: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--unrelated-heritability: %" PRIuPTR " phenotypes loaded.\n", pheno_nm_ct);
^
plink_calc.c: In function 'int32_t ibs_test_calc(pthread_t*, char*, long unsigned int, long unsigned int*, long unsigned int, long unsigned int, long unsigned int, long unsigned int, long unsigned int*, long unsigned int*)':
plink_calc.c:3034:90: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=]
printf("--ibs-test (%" PRIuPTR " permutations): [generating permutations]", perm_ct - 1);
^
In file included from plink_calc.c:73:0:
plink_calc.c: In function 'int32_t rel_cutoff_batch(uint32_t, char*, char*, char*, Rel_info*)':
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_calc.c:6164:7: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, grmname);
^
plink_calc.c: In function 'int32_t calc_rel(pthread_t*, uint32_t, uint32_t, long long unsigned int, Rel_info*, FILE*, long unsigned int, char*, char*, long unsigned int, long unsigned int*, long unsigned int*, uint32_t, long unsigned int, long unsigned int*, long unsigned int*, char*, long unsigned int, double*, double**, Chrom_info*)':
plink_calc.c:7092:58: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=]
printf("\r%" PRIuPTR " markers complete.", marker_idx);
^
plink_calc.c: In function 'int32_t calc_ibm(pthread_t*, FILE*, long unsigned int, long unsigned int*, uint32_t, long unsigned int, long unsigned int*, long unsigned int, Chrom_info*)':
plink_calc.c:8045:58: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=]
printf("\r%" PRIuPTR " markers complete.", marker_idx);
^
plink_calc.c: In function 'int32_t calc_distance(pthread_t*, uint32_t, uint32_t, FILE*, long unsigned int, char*, char*, long long unsigned int, uint32_t, long unsigned int*, uint32_t, double*, long unsigned int, long unsigned int*, long unsigned int, char*, long unsigned int, Chrom_info*, uint32_t, uint32_t, uint32_t*, double)':
plink_calc.c:8413:58: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=]
printf("\r%" PRIuPTR " markers complete.", marker_idx);
^
plink_calc.c: In function 'void* regress_jack_thread(void*)':
plink_calc.c:9752:38: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=]
printf("\r%" PRIuPTR "%%", uljj);
^
plink_calc.c: In function 'int32_t unrelated_herit_batch(uint32_t, char*, char*, uint32_t, char*, int32_t, Rel_info*)':
plink_calc.c:2849:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&fxx, 4, 1, grm_binfile);
^
plink_calc.c: In function 'uint32_t rel_cutoff_batch_rbin_emitn(uint32_t, unsigned char*)':
plink_calc.c:6070:33: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&fxx, 4, 1, in_bin_nfile);
^
plink_calc.c:6072:31: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&fxx, 4, 1, in_binfile);
^
plink_calc.c: In function 'int32_t rel_cutoff_batch(uint32_t, char*, char*, char*, Rel_info*)':
plink_calc.c:6603:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&fxx, 4, 1, in_bin_nfile);
^
plink_calc.c:6605:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&fxx, 4, 1, in_binfile);
^
plink_cluster.c: In function 'int32_t load_clusters(char*, long unsigned int, long unsigned int*, long unsigned int*, char*, long unsigned int, uint32_t, uint32_t, long unsigned int*, uint32_t**, uint32_t**, char**, long unsigned int*, char*, char*, char*, char*)':
plink_cluster.c:106:108: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --keep-clusters file is pathologically long.\n", line_idx);
^
plink_cluster.c:184:112: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --remove-clusters file is pathologically long.\n", line_idx);
^
plink_cluster.c:223:110: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --remove-clusters file is pathologically long.\n", line_idx);
^
plink_cluster.c:313:97: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --within file is pathologically long.\n", line_idx);
^
In file included from plink_cluster.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_cluster.c:455:7: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--within: %" PRIuPTR " cluster%s loaded, covering a total of %" PRIuPTR " %s.\n", cluster_ct, (cluster_ct == 1)? "" : "s", assigned_ct, species_str(assigned_ct));
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_cluster.c:455:7: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--within: %" PRIuPTR " cluster%s loaded, covering a total of %" PRIuPTR " %s.\n", cluster_ct, (cluster_ct == 1)? "" : "s", assigned_ct, species_str(assigned_ct));
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_cluster.c:548:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--family: %" PRIuPTR " cluster%s defined.\n", cluster_ct, (cluster_ct == 1)? "" : "s");
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_cluster.c:556:7: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("%" PRIuPTR " %s removed by cluster filter(s).\n", ulii, species_str(ulii));
^
plink_cluster.c:573:108: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --within file has fewer tokens than expected.\n", line_idx);
^
In file included from plink_cluster.c:1:0:
plink_cluster.c: In function 'int32_t read_dists(char*, char*, long unsigned int, long unsigned int*, long unsigned int, char*, long unsigned int, long unsigned int, uint32_t*, uint32_t*, uint32_t, uint32_t, double*, uint32_t, double*, uint32_t*)':
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_cluster.c:1094:2: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, id_fname);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_cluster.c:1102:2: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s has fewer tokens than expected.\n", line_idx, id_fname);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_cluster.c:1263:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--read-dists: %" PRIuPTR " values loaded%s.\n", (sample_ct * (sample_ct - 1)) / 2, for_cluster_flag? " for --cluster/--neighbor" : "");
^
plink_cluster.c: In function 'int32_t read_genome(char*, long unsigned int, long unsigned int*, long unsigned int, char*, long unsigned int, long unsigned int*, double*, uint32_t, double*, uint32_t*, uint32_t*, double, uint32_t, long unsigned int, uint32_t*, uint32_t*)':
plink_cluster.c:1379:115: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: FID1/IID1 matches FID2/IID2 on line %" PRIuPTR " of --read-genome file.\n", line_idx);
^
plink_cluster.c:1389:105: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid PPC test value on line %" PRIuPTR " of --read-genome file.\n", line_idx);
^
plink_cluster.c:1399:105: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid IBS value on line %" PRIuPTR " of --read-genome file.\n", line_idx);
^
In file included from plink_cluster.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_cluster.c:1451:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Line %" PRIuPTR " of --read-genome file has fewer tokens than expected.\n", line_idx);
^
plink_cluster.c:1455:105: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --read-genome file is pathologically long.\n", line_idx);
^
plink_cluster.c: In function 'int32_t cluster_enforce_match(Cluster_info*, int32_t, long unsigned int, long unsigned int*, long unsigned int, char*, long unsigned int, long unsigned int, uint32_t*, uint32_t*, long unsigned int*)':
plink_cluster.c:1540:103: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --match-type file is pathologically long.\n", line_idx);
^
plink_cluster.c:1556:135: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --match-type file has an invalid token\n(0/1/-1/-/+/* expected).\n", line_idx);
^
plink_cluster.c:1605:96: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --match file is pathologically long.\n", line_idx);
^
plink_cluster.c:1773:93: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --qt file is pathologically long.\n", line_idx);
^
plink_cluster.c:1779:96: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --qt file has a non-numeric value.\n", line_idx);
^
plink_cluster.c:1784:148: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --qt file has an invalid tolerance (-1 = ignore,\nother values must be nonnegative).\n", line_idx);
^
plink_cluster.c:1818:97: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --qmatch file is pathologically long.\n", line_idx);
^
plink_cluster.c:1848:108: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --qmatch file has a non-numeric covariate.\n", line_idx);
^
In file included from plink_cluster.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_cluster.c:1951:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Line %" PRIuPTR " of --qmatch file has fewer tokens than expected.\n", line_idx);
^
plink_cluster.c:1955:107: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --match file has fewer tokens than expected.\n", line_idx);
^
plink_cnv.c: In function 'int32_t cnv_intersect_load(uint32_t, char*, char*, long unsigned int, long unsigned int, long unsigned int*, long unsigned int*, uint32_t*, uint32_t*, long long unsigned int**, long long unsigned int**, int32_t, int32_t, uint32_t, Chrom_info*, long unsigned int*)':
plink_cnv.c:113:101: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, cift_str);
^
plink_cnv.c:121:109: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of %s file has fewer tokens than expected.\n", line_idx, cift_str);
^
plink_cnv.c:127:102: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid chromosome code on line %" PRIuPTR " of %s.\n", line_idx, cift_str);
^
plink_cnv.c:141:98: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid bp coordinate on line %" PRIuPTR " of %s.\n", line_idx, cift_str);
^
plink_cnv.c:145:98: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid bp coordinate on line %" PRIuPTR " of %s.\n", line_idx, cift_str);
^
In file included from plink_cnv.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_cnv.c:150:4: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Warning: End of range before start of range on line %" PRIuPTR " of\n%s.\n", line_idx, cift_str);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_cnv.c:186:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("(%" PRIuPTR " subsequent line%s with [end of range] < [start of range].)\n", reverse_warning_ct - 1, (reverse_warning_ct == 2)? "" : "s");
^
plink_cnv.c: In function 'int32_t cnv_first_nonheader_line(FILE*, long unsigned int*)':
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_cnv.c:325:7: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("\nError: Line %" PRIuPTR " of .cnv file is pathologically long.\n", line_idx);
^
plink_cnv.c: In function 'int32_t cnv_make_map(FILE*, char*, uint32_t, uint32_t, uint32_t, double, double, uint32_t, uint32_t, long unsigned int*, long unsigned int*, uint32_t*, uint32_t*, long long unsigned int*, long long unsigned int*, uint32_t, uint32_t, double, int32_t, int32_t, uint32_t, uint32_t, Chrom_info*, long unsigned int*, uint32_t*)':
plink_cnv.c:499:100: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Line %" PRIuPTR " of .cnv file is pathologically long.\n", line_idx);
^
plink_cnv.c:508:103: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Line %" PRIuPTR " of .cnv file has fewer tokens than expected.\n", line_idx);
^
plink_cnv.c:514:101: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Invalid chromosome code on line %" PRIuPTR " of .cnv file.\n", line_idx);
^
plink_cnv.c:530:97: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Invalid bp coordinate on line %" PRIuPTR " of .cnv file.\n", line_idx);
^
plink_cnv.c:534:126: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Segment end coordinate smaller than segment start on line %" PRIuPTR " of\n.cnv file.\n", line_idx);
^
plink_cnv.c:551:104: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Invalid variant copy count on line %" PRIuPTR " of .cnv file.\n", line_idx);
^
plink_cnv.c:565:109: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Invalid confidence score on line %" PRIuPTR " of .cnv file.\n", line_idx);
^
plink_cnv.c:575:97: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Invalid probe count on line %" PRIuPTR " of .cnv file.\n", line_idx);
^
plink_cnv.c: In function 'int32_t validate_cnv_map(FILE**, char*, int32_t*, int32_t*, uint32_t, Chrom_info*, long unsigned int*, uint32_t*)':
plink_cnv.c:743:101: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid chromosome code on line %" PRIuPTR " of .cnv.map file.\n", line_idx);
^
plink_cnv.c:769:104: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid bp coordinate on line %" PRIuPTR " of .cnv.map file.\n", line_idx);
^
In file included from plink_cnv.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_cnv.c:812:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Line %" PRIuPTR " of .cnv.map file has fewer tokens than expected.\n", line_idx);
^
plink_cnv.c:816:95: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of .cnv.map is pathologically long.\n", line_idx);
^
In file included from plink_common.c:1:0:
plink_common.c: In function 'int32_t resolve_or_add_chrom_name(Chrom_info*, char*, int32_t*, long unsigned int, const char*)':
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_common.c:4335:7: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("Error: Line %" PRIuPTR " of %s has an excessively long chromosome/contig name. (The " PROG_NAME_CAPS " limit is " MAX_ID_LEN_STR " characters.)\n", line_idx, file_descrip);
^
plink_common.c: In function 'int32_t open_and_size_string_list(char*, FILE**, long unsigned int*, long unsigned int*)':
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_common.c:8766:7: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, fname);
^
plink_common.c: In function 'int32_t load_to_first_token(FILE*, long unsigned int, char, const char*, char*, char**, long unsigned int*)':
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_common.c:8860:2: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, file_descrip);
^
plink_common.c: In function 'int32_t scan_max_strlen(char*, uint32_t, uint32_t, uint32_t, char, long unsigned int*, long unsigned int*)':
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_common.c:8934:9: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, fname);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_common.c:8949:7: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s has fewer tokens than expected.\n", line_idx, fname);
^
plink_common.c: In function 'int32_t scan_max_fam_indiv_strlen(char*, uint32_t, long unsigned int*)':
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_common.c:9019:2: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, fname);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_common.c:9032:7: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s has fewer tokens than expected.\n", line_idx, fname);
^
In file included from plink_data.c:1:0:
plink_data.c: In function 'uint32_t chrom_error(const char*, Chrom_info*, char*, long unsigned int, int32_t, uint32_t)':
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_data.c:188:5: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("Error: Invalid chromosome code '%s' on line %" PRIuPTR " of %s.\n", chrom_str, line_idx, extension);
^
plink_data.c: In function 'int32_t load_map(FILE**, char*, uint32_t*, long unsigned int*, long unsigned int*, long unsigned int*, long unsigned int**, char**, Chrom_info*, uint32_t**, uint32_t*, uint32_t)':
plink_data.c:238:98: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of .map file is pathologically long.\n", line_idx);
^
plink_data.c:348:95: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid bp coordinate on line %" PRIuPTR " of .map file.\n", line_idx);
^
plink_data.c:386:104: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of .map file has fewer tokens than expected.\n", line_idx);
^
plink_data.c: In function 'int32_t load_bim(char*, uint32_t*, long unsigned int*, long unsigned int*, long unsigned int*, long unsigned int**, double**, uint32_t**, char***, long unsigned int*, char**, char*, uint32_t, const char*, Chrom_info*, double**, uint32_t**, long long unsigned int, long long unsigned int, int32_t, int32_t, int32_t, char*, char*, char*, Range_list*, uint32_t*, uint32_t, uint32_t, uint32_t, const char*, const char*, uint32_t*)':
plink_data.c:647:97: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, ftype_str);
^
plink_data.c:1145:110: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid centimorgan position on line %" PRIuPTR " of %s.\n", line_idx, ftype_str);
^
In file included from plink_data.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:1279:3: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("%" PRIuPTR " variant%s loaded from %s.\n", unfiltered_marker_ct - marker_exclude_ct, (unfiltered_marker_ct == marker_exclude_ct + 1)? "" : "s", ftype_str);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:1301:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Invalid bp coordinate on line %" PRIuPTR " of %s.\n", line_idx, ftype_str);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:1305:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Line %" PRIuPTR " of %s has fewer tokens than expected.\n", line_idx, ftype_str);
^
plink_data.c: In function 'int32_t load_covars(char*, long unsigned int, long unsigned int*, long unsigned int, long unsigned int*, long unsigned int*, char*, long unsigned int, double, uint32_t, Range_list*, uint32_t, long unsigned int*, char**, long unsigned int*, long unsigned int*, long unsigned int**, double**, long unsigned int**, long unsigned int**)':
plink_data.c:1608:96: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --covar file is pathologically long.\n", line_idx);
^
plink_data.c:1705:138: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--covar: 1 C/C cov. loaded for --gxe, %" PRIuPTR "/%" PRIuPTR " for other operations.\n", covar_ct, covar_raw_ct);
^
plink_data.c:1705:138: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
plink_data.c:1707:113: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--covar: %" PRIuPTR " out of %" PRIuPTR " covariates loaded.\n", covar_ct, covar_raw_ct);
^
plink_data.c:1707:113: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
plink_data.c:1710:105: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--covar: %" PRIuPTR " covariate%s loaded.\n", covar_ct, (covar_ct == 1)? "" : "s");
^
In file included from plink_data.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:1718:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("%" PRIuPTR " %s had missing value(s)%s", missing_cov_ct, species_str(missing_cov_ct), ulii? ", and " : ".\n");
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:1721:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("%" PRIuPTR " %s %s not seen in the covariate file.\n", ulii, species_str(ulii), (ulii == 1)? "was" : "were");
^
plink_data.c:1735:106: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Fewer tokens than expected on line %" PRIuPTR " of --covar file.\n", line_idx);
^
plink_data.c: In function 'int32_t zero_cluster_init(char*, long unsigned int, long unsigned int*, long unsigned int, char*, long unsigned int, long unsigned int, long unsigned int*, long unsigned int, uint32_t*, long unsigned int, uint32_t*, uint32_t*, char*, long unsigned int, uint32_t**, long unsigned int**)':
plink_data.c:2233:108: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --zero-cluster file is pathologically long.\n", line_idx);
^
In file included from plink_data.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:2329:3: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--zero-cluster: %" PRIuPTR " line%s processed.\n", zc_item_ct, (zc_item_ct == 1)? "" : "s");
^
plink_data.c:2341:114: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --zero-cluster file has fewer tokens than expected.\n", line_idx);
^
plink_data.c: In function 'int32_t update_marker_chroms(Two_col_params*, long unsigned int, long unsigned int*, long unsigned int, char*, long unsigned int, uint32_t, Chrom_info*, long long int*)':
plink_data.c:2595:101: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --update-chr file is pathologically long.\n", line_idx);
^
plink_data.c:2635:105: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid chromosome code on line %" PRIuPTR " of --update-chr file.\n", line_idx);
^
plink_data.c:2650:175: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--update-chr: %" PRIuPTR " value%s updated, %" PRIuPTR " variant ID%s not present.\n", hit_ct, (hit_ct == 1)? "" : "s", miss_ct, (miss_ct == 1)? "" : "s");
^
plink_data.c:2650:175: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
plink_data.c:2652:101: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--update-chr: %" PRIuPTR " value%s updated.\n", hit_ct, (hit_ct == 1)? "" : "s");
^
plink_data.c:2663:112: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --update-chr file has fewer tokens than expected.\n", line_idx);
^
plink_data.c: In function 'int32_t flip_subset_init(char*, char*, long unsigned int, long unsigned int*, long unsigned int, char*, long unsigned int, char**, long unsigned int, long unsigned int*, long unsigned int, uint32_t*, char*, long unsigned int, long unsigned int*, long unsigned int*)':
plink_data.c:2966:100: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --flip file is pathologically long.\n", line_idx);
^
plink_data.c:2982:135: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid alleles (not reverse complement single bases) on line\n%" PRIuPTR " of --flip file.\n", line_idx);
^
plink_data.c:3018:107: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --flip-subset file is pathologically long.\n", line_idx);
^
In file included from plink_data.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:3047:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Warning: %" PRIuPTR " --flip-subset line%s skipped.\n", miss_ct, (miss_ct == 1)? "" : "s");
^
plink_data.c: In function 'int32_t load_fam(char*, uint32_t, uint32_t, int32_t, uint32_t, long unsigned int*, char**, long unsigned int*, char**, long unsigned int*, char**, long unsigned int*, long unsigned int**, long unsigned int**, uint32_t*, long unsigned int**, long unsigned int**, double**, long unsigned int**, long unsigned int**)':
plink_data.c:3738:93: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of .fam file is pathologically long.\n", line_idx);
^
plink_data.c:3756:89: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid IID '0' on line %" PRIuPTR " of .fam file.\n", line_idx);
^
plink_data.c:3953:104: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of .fam file has fewer tokens than expected.\n", line_idx);
^
plink_data.c: In function 'int32_t oxford_to_bed(char*, char*, char*, char*, char*, char*, double, char*, int32_t, long long unsigned int, uint32_t, Chrom_info*)':
plink_data.c:4272:93: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid sex code on line %" PRIuPTR " of .sample file.\n", line_idx);
^
In file included from plink_data.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:4374:4: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Line %" PRIuPTR " of .gen file is pathologically long.\n", line_idx);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:4985:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Line %" PRIuPTR " of .gen file has an invalid dosage value.\n", line_idx);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:4989:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Line %" PRIuPTR " of .gen file has fewer tokens than expected.\n", line_idx);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:4993:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Line %" PRIuPTR " of .sample file has fewer tokens than expected.\n", line_idx);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:4997:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Line %" PRIuPTR " of .sample file is pathologically long.\n", line_idx);
^
plink_data.c: In function 'int32_t ped_to_bed_multichar_allele(FILE**, FILE**, char*, char*, FILE**, long unsigned int, long unsigned int*, long unsigned int, char*, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t*, long long int, char*)':
plink_data.c:5269:100: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of .ped file is pathologically long.\n", line_idx);
^
plink_data.c:5362:105: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of .ped file has more tokens than expected.\n", line_idx);
^
plink_data.c:5421:140: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Warning: Variant %" PRIuPTR " %sallelic; setting rarest alleles missing.\n", marker_idx + 1, (uii? "quad" : "tri"));
^
plink_data.c:5501:175: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Performing single-pass .bed write (%" PRIuPTR " variant%s, %" PRIuPTR " %s).\n", marker_ct, (marker_ct == 1)? "" : "s", sample_ct, species_str(sample_ct));
^
plink_data.c:5501:175: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
plink_data.c:5514:213: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Performing %u-pass .bed write (%u/%" PRIuPTR " variant%s/pass, %" PRIuPTR " %s).\n", pass_ct, markers_per_pass, marker_ct, (markers_per_pass == 1)? "" : "s", sample_ct, species_str(sample_ct));
^
plink_data.c:5514:213: warning: format '%u' expects argument of type 'unsigned int', but argument 7 has type 'long unsigned int' [-Wformat=]
In file included from plink_data.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:5690:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Half-missing call in .ped file at variant %" PRIuPTR ", line %" PRIuPTR ".\n", marker_uidx + 1, line_idx);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:5690:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Half-missing call in .ped file at variant %" PRIuPTR ", line %" PRIuPTR ".\n", marker_uidx + 1, line_idx);
^
plink_data.c:5695:104: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of .ped file has fewer tokens than expected.\n", line_idx);
^
plink_data.c: In function 'int32_t ped_to_bed(char*, char*, char*, char*, uint32_t, long long unsigned int, int32_t, Chrom_info*)':
plink_data.c:5797:98: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of .map file is pathologically long.\n", line_idx);
^
plink_data.c:5825:95: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid bp coordinate on line %" PRIuPTR " of .map file.\n", line_idx);
^
plink_data.c:5915:95: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Line %" PRIuPTR " of .ped file is pathologically long.\n", line_idx);
^
plink_data.c:5939:109: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Line %" PRIuPTR " of .ped file has a pathologically long token.\n", line_idx);
^
plink_data.c:6066:134: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Warning: Variant %" PRIuPTR " %sallelic; setting rarest alleles missing.\n", marker_idx + 1, (cc? "quad" : "tri"));
^
plink_data.c:6147:177: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Performing single-pass .bed write (%" PRIuPTR " variant%s, %" PRIuPTR " %s).\n", marker_ct, (marker_ct == 1)? "" : "s", sample_ct, species_str(sample_ct));
^
plink_data.c:6147:177: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
plink_data.c:6160:215: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Performing %u-pass .bed write (%u/%" PRIuPTR " variant%s/pass, %" PRIuPTR " %s).\n", pass_ct, markers_per_pass, marker_ct, (markers_per_pass == 1)? "" : "s", sample_ct, species_str(sample_ct));
^
plink_data.c:6160:215: warning: format '%u' expects argument of type 'unsigned int', but argument 7 has type 'long unsigned int' [-Wformat=]
In file included from plink_data.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:6329:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("\nError: Line %" PRIuPTR " of .map file has fewer tokens than expected.\n", line_idx);
^
plink_data.c:6333:106: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Line %" PRIuPTR " of .ped file has fewer tokens than expected.\n", line_idx);
^
plink_data.c: In function 'int32_t lgen_to_bed(char*, char*, char*, int32_t, long long unsigned int, uint32_t, char*, Chrom_info*)':
plink_data.c:6505:95: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of .ref file is pathologically long.\n", line_idx);
^
plink_data.c:6517:101: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of .ref file has fewer tokens than expected.\n", line_idx);
^
plink_data.c:6633:102: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid compound genotype on line %" PRIuPTR " of .lgen file.\n", line_idx);
^
In file included from plink_data.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:6933:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Line %" PRIuPTR " of .lgen file is pathologically long.\n", line_idx);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:6937:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Half-missing genotype on line %" PRIuPTR " of .lgen file.\n", line_idx);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:6941:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Sample ID on line %" PRIuPTR " of .lgen file is missing from .fam file.\n", line_idx);
^
plink_data.c:6945:105: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of .lgen file has fewer tokens than expected.\n", line_idx);
^
plink_data.c: In function 'int32_t transposed_to_bed(char*, char*, char*, char*, long long unsigned int, Chrom_info*)':
plink_data.c:7102:99: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of .tfam file is pathologically long.\n", line_idx);
^
plink_data.c:7179:96: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of .tped file has excessive whitespace.\n", line_idx);
^
plink_data.c:7190:187: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of .tped file has an excessively long\nchromosome/contig name. (The " PROG_NAME_CAPS " limit is " MAX_ID_LEN_STR " characters.)\n", line_idx);
^
plink_data.c:7192:174: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of .tped file has an excessively long variant ID.\n(The " PROG_NAME_CAPS " limit is " MAX_ID_LEN_STR " characters.)\n", line_idx);
^
plink_data.c:7197:119: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of .tped file has an excessively long centimorgan\nposition.\n", line_idx);
^
plink_data.c:7199:111: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of .tped file has an excessively long bp coordinate.\n", line_idx);
^
plink_data.c:7201:98: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of .tped file has excessive whitespace.\n", line_idx);
^
plink_data.c:7230:105: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of .tped file has an invalid bp coordinate.\n", line_idx);
^
In file included from plink_data.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:7400:7: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Note: Variant %" PRIuPTR " is %sallelic. Setting rarest alleles to missing.\n", marker_ct - 1, allele_cts[3]? "quad" : "tri");
^
plink_data.c:7577:102: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid centimorgan position on line %" PRIuPTR " of .tped file\n", line_idx);
^
In file included from plink_data.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:7692:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Line %" PRIuPTR " of .tped file has fewer tokens than expected.\n", line_idx);
^
plink_data.c:7699:98: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of .tped file has a half-missing call.\n", line_idx);
^
In file included from plink_data.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:7707:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: More than four alleles at variant %" PRIuPTR ".\n", marker_ct - 1);
^
plink_data.c: In function 'int32_t vcf_to_bed(char*, char*, char*, int32_t, long long unsigned int, char*, char, char, double, char*, double, double, uint32_t, Chrom_info*)':
plink_data.c:8125:110: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Invalid variant bp coordinate on line %" PRIuPTR " of .vcf file.\n", line_idx);
^
plink_data.c:8145:101: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Invalid alternate allele on line %" PRIuPTR " of .vcf file.\n", line_idx);
^
plink_data.c:8154:110: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: ALT allele duplicates REF allele on line %" PRIuPTR " of .vcf file.\n", line_idx);
^
plink_data.c:8166:100: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Malformed ALT field on line %" PRIuPTR " of .vcf file.\n", line_idx);
^
plink_data.c:8183:101: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Invalid QUAL value on line %" PRIuPTR " of .vcf file.\n", line_idx);
^
In file included from plink_data.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:8710:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("\nError: Line %" PRIuPTR " of .vcf file has a GT half-call.\n", line_idx);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:8718:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Line %" PRIuPTR " of .vcf file has an improperly formatted GP field.\n", line_idx);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:8722:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("\nError: Line %" PRIuPTR " of .vcf file has an invalid GT field.\n", line_idx);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:8726:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("\nError: Line %" PRIuPTR " of .vcf file has fewer tokens than expected.\n", line_idx);
^
plink_data.c:8730:98: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Line %" PRIuPTR " of .vcf file is pathologically long.\n", line_idx);
^
plink_data.c: In function 'int32_t bed_from_23(char*, char*, char*, uint32_t, char*, char*, double, char*, char*, Chrom_info*)':
plink_data.c:9704:104: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, infile_name);
^
In file included from plink_data.c:1:0:
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_data.c:9722:7: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s has more allele calls than expected.\n", line_idx, infile_name);
^
plink_data.c:9727:108: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid chromosome code on line %" PRIuPTR " of %s.\n", line_idx, infile_name);
^
In file included from plink_data.c:1:0:
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_data.c:9791:4: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Nonmissing female allele call on line %" PRIuPTR " of %s.\n", line_idx, infile_name);
^
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_data.c:9915:5: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("Error: Line %" PRIuPTR " of %s has fewer tokens than expected.\n", line_idx, infile_name);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_data.c:9919:5: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s has fewer allele calls than expected.\n", line_idx, infile_name);
^
plink_data.c: In function 'int32_t generate_dummy(char*, char*, uint32_t, long unsigned int, long unsigned int, double, double, int32_t)':
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_data.c:10133:3: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("Dummy data (%" PRIuPTR " %s, %" PRIuPTR " SNP%s) written to %s.bed + %s.bim + %s.fam .\n", sample_ct, species_str(sample_ct), marker_ct, (marker_ct == 1)? "" : "s", outname, outname, outname);
^
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_data.c:10133:3: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("Dummy data (%" PRIuPTR " %s, %" PRIuPTR " SNP%s) written to %s.bed + %s.bim + %s.fam .\n", sample_ct, species_str(sample_ct), marker_ct, (marker_ct == 1)? "" : "s", outname, outname, outname);
^
plink_data.c: In function 'int32_t simulate_dataset(char*, char*, uint32_t, char*, uint32_t, uint32_t, double, uint32_t, double, char*)':
plink_data.c:10618:127: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Line %" PRIuPTR " of --simulate%s file is pathologically long.\n", line_idx, is_qt? "-qt" : "");
^
plink_data.c:10626:131: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Invalid SNP count on line %" PRIuPTR " of --simulate%s input file.\n", line_idx, is_qt? "-qt" : "");
^
plink_data.c:10663:135: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Line %" PRIuPTR " of --simulate%s file has fewer tokens than expected.\n", line_idx, is_qt? "-qt" : "");
^
plink_data.c:10667:134: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Line %" PRIuPTR " of --simulate%s file has more tokens than expected.\n", line_idx, is_qt? "-qt" : "");
^
plink_data.c:10679:139: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Invalid allele frequency bound on line %" PRIuPTR " of --simulate%s\nfile.\n", line_idx, is_qt? "-qt" : "");
^
plink_data.c:10685:141: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Invalid marker allele frequency bound on line %" PRIuPTR " of\n--simulate%s file.\n", line_idx, is_qt? "-qt" : "");
^
plink_data.c:10689:124: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Invalid d-prime on line %" PRIuPTR " of --simulate%s input file.\n", line_idx, is_qt? "-qt" : "");
^
plink_data.c:10697:107: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Invalid variance value on line %" PRIuPTR " of --simulate-qt file.\n", line_idx);
^
plink_data.c:10701:134: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Nonzero variance with fixed 0/1 allele frequency on line %" PRIuPTR " of\n--simulate-qt file.\n", line_idx);
^
plink_data.c:10710:119: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Invalid dominance deviation value on line %" PRIuPTR " of --simulate-qt\nfile.\n", line_idx);
^
plink_data.c:10715:122: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Invalid heterozygote disease odds ratio on line %" PRIuPTR " of\n--simulate file.\n", line_idx);
^
plink_data.c:10721:120: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "\nError: Invalid homozygote disease odds ratio on line %" PRIuPTR " of --simulate\nfile.\n", line_idx);
^
plink_data.c: In function 'int32_t recode_allele_load(char*, long unsigned int, char*, char***, long unsigned int, long unsigned int*, long unsigned int, char*, long unsigned int, char**, long unsigned int, long unsigned int*, char*)':
plink_data.c:11115:109: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --recode-allele file is pathologically long.\n", line_idx);
^
plink_data.c:11125:117: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --recode-allele file has fewer tokens than expected.\n", line_idx);
^
plink_data.c: In function 'int32_t sample_sort_file_map(char*, long unsigned int, long unsigned int*, long unsigned int, char*, long unsigned int, uint32_t**)':
plink_data.c:13847:106: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --indiv-sort file is pathologically long.\n", line_idx);
^
plink_data.c:13855:114: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --indiv-sort file has fewer tokens than expected.\n", line_idx);
^
In file included from plink_data.c:1:0:
plink_data.c: In function 'int32_t merge_fam_id_scan(char*, char*, long unsigned int*, uint32_t*, uint32_t*, Ll_entry**, long unsigned int*, long long unsigned int*, uint32_t*, uint32_t*, uint32_t*)':
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_data.c:14020:2: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s has fewer tokens than expected.\n", line_idx, famname);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_data.c:14127:5: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, famname);
^
plink_data.c: In function 'int32_t merge_bim_scan(char*, uint32_t, long unsigned int*, Ll_entry2**, long unsigned int*, uint32_t*, long long unsigned int*, uint32_t*, long long unsigned int*, Ll_str**, uint32_t, Chrom_info*)':
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_data.c:14211:2: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, bimname);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_data.c:14252:7: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Invalid bp coordinate on line %" PRIuPTR " of %s.\n", line_idx, bimname);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_data.c:14270:4: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Identical A1 and A2 alleles on line %" PRIuPTR " of %s.\n", line_idx, bimname);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_data.c:14432:5: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s has fewer tokens than expected.\n", line_idx, bimname);
^
plink_data.c: In function 'int32_t report_non_biallelics(char*, char*, Ll_str*)':
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_data.c:14499:3: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: %" PRIuPTR " variant%s with 3+ alleles present.\n* If you believe this is due to strand inconsistency, try --flip with\n %s.\n (Warning: if this seems to work, strand errors involving SNPs with A/T or C/G\n alleles probably remain in your data. If LD between nearby SNPs is high,\n --flip-scan should detect them.)\n* If you are dealing with genuine multiallelic variants, we recommend exporting\n that subset of the data to VCF (via e.g. '--recode vcf'), merging with\n another tool/script, and then importing the result; PLINK is not yet suited\n to handling them.\n", nbmarker_ct, (nbmarker_ct == 1)? "" : "s", outname);
^
plink_data.c: In function 'int32_t merge_main(char*, char*, char*, char*, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, char**, char*, long unsigned int, char*, long unsigned int, uint32_t, uint32_t*, uint32_t*, uint32_t*, char*, unsigned char*, unsigned char*, uint32_t, long unsigned int*, FILE*, long long unsigned int*, long long unsigned int*, long long unsigned int*, uint32_t)':
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_data.c:15278:2: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s has more tokens than expected.\n", line_idx, bedname);
^
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_data.c:15311:5: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("Error: Line %" PRIuPTR " of %s has a half-missing call.\n", line_idx, bedname);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_data.c:15315:5: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s has fewer tokens than expected.\n", line_idx, bedname);
^
plink_data.c: In function 'int32_t merge_datasets(char*, char*, char*, char*, char*, char*, char*, char*, char*, long long unsigned int, uint32_t, uint32_t, long long unsigned int, Chrom_info*)':
plink_data.c:15435:101: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --merge-list file is pathologically long.\n", line_idx);
^
plink_data.c:15444:108: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --merge-list file has more tokens than expected.\n", line_idx);
^
plink_data.c:15451:120: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --merge-list file has an excessively long fileset\nprefix.\n", line_idx);
^
plink_data.c:15460:115: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --merge-list file has an excessively long filename.\n", line_idx);
^
plink_data.c:15961:217: warning: format '%u' expects argument of type 'unsigned int', but argument 6 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Performing %u-pass merge (%u %s, %" PRIuPTR "/%u variant%s per pass).\n", pass_ct, tot_sample_ct, species_str(tot_sample_ct), markers_per_pass, dedup_marker_ct, (dedup_marker_ct == 1)? "" : "s");
^
plink_data.c:16001:80: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
printf("\rPass %u: fileset #%" PRIuPTR " complete.", uii + 1, mlpos + 1);
^
plink_dosage.c: In function 'int32_t dosage_load_score_files(Score_info*, char*, char*, long unsigned int*, long unsigned int*, char**, char***, double**, long unsigned int**, double**, long unsigned int*, long unsigned int*, char**, double**)':
plink_dosage.c:161:103: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --score file is pathologically long.\n", line_idx);
^
plink_dosage.c:238:103: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --score file is pathologically long.\n", line_idx);
^
In file included from plink_dosage.c:1:0:
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_dosage.c:294:3: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("--score: %" PRIuPTR " entr%s loaded from %s.\n", score_marker_ct, (score_marker_ct == 1)? "y" : "ies", sc_ip->fname);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_dosage.c:296:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Warning: %" PRIuPTR " line%s skipped.\n", miss_ct, (miss_ct == 1)? "" : "s");
^
plink_dosage.c:347:111: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --q-score-range data file is pathologically long.\n", line_idx);
^
In file included from plink_dosage.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_dosage.c:361:7: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Warning: %" PRIuPTR " line%s skipped in --q-score-range data file.\n", miss_ct, (miss_ct == 1)? "" : "s");
^
plink_dosage.c:371:117: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --q-score-range range file is pathologically long.\n", line_idx);
^
plink_dosage.c:386:126: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Excessively long range name on line %" PRIuPTR " of --q-score-range range\nfile.\n", line_idx);
^
In file included from plink_dosage.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_dosage.c:428:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--q-score-range: %" PRIuPTR " range%s loaded.\n", qrange_ct, (qrange_ct == 1)? "" : "s");
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_dosage.c:443:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Line %" PRIuPTR " of --q-score-range data file has fewer tokens than\nexpected.\n", line_idx);
^
plink_dosage.c:447:107: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --score file has fewer tokens than expected.\n", line_idx);
^
In file included from plink_dosage.c:1:0:
plink_dosage.c: In function 'int32_t plink1_dosage(Dosage_info*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, char*, Two_col_params*, Two_col_params*, Two_col_params*, char*, char*, char*, char*, char*, char*, char*, char*, double, double, double, uint32_t, uint32_t, uint32_t, uint32_t, int32_t, char*, uint32_t, uint32_t, Chrom_info*, double, double, long long unsigned int, long long unsigned int, uint32_t, uint32_t, Cluster_info*, int32_t, int32_t, int32_t, char*, char*, char*, Range_list*, uint32_t, Range_list*, uint32_t, uint32_t, double, double, Score_info*)':
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_dosage.c:708:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("%" PRIuPTR " %s (%u male%s, %u female%s, %u ambiguous) loaded from .fam.\n", unfiltered_sample_ct, species_str(unfiltered_sample_ct), uii, (uii == 1)? "" : "s", ujj, (ujj == 1)? "" : "s", gender_unk_ct);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_dosage.c:714:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("%" PRIuPTR " %s (%d male%s, %d female%s) loaded from .fam.\n", unfiltered_sample_ct, species_str(unfiltered_sample_ct), uii, (uii == 1)? "" : "s", ujj, (ujj == 1)? "" : "s");
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_dosage.c:794:4: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--extract range: %" PRIuPTR " variant%s remaining.\n", uljj, (uljj == 1)? "" : "s");
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_dosage.c:813:4: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--exclude range: %" PRIuPTR " variant%s remaining.\n", uljj, (uljj == 1)? "" : "s");
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_dosage.c:926:7: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("%s--prune: %" PRIuPTR " %s remaining.\n", uii? "Automatic " : "", unfiltered_sample_ct - sample_exclude_ct, species_str(unfiltered_sample_ct == sample_exclude_ct + 1));
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_dosage.c:1049:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("%" PRIuPTR " variant%s and %" PRIuPTR " %s pass filters and QC.\n", marker_ct, (marker_ct == 1)? "" : "s", sample_ct, species_str(sample_ct));
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_dosage.c:1049:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("%" PRIuPTR " variant%s and %" PRIuPTR " %s pass filters and QC.\n", marker_ct, (marker_ct == 1)? "" : "s", sample_ct, species_str(sample_ct));
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_dosage.c:1051:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("%" PRIuPTR " %s pass%s filters and QC.\n", sample_ct, species_str(sample_ct), (sample_ct == 1)? "es" : "");
^
plink_dosage.c:1062:344: warning: format '%u' expects argument of type 'unsigned int', but argument 7 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Among remaining phenotypes, %u %s and %u %s. (%" PRIuPTR " phenotype%s missing.)\n", pheno_nm_ct - pheno_ctrl_ct, (pheno_nm_ct - pheno_ctrl_ct == 1)? "is a case" : "are cases", pheno_ctrl_ct, (pheno_ctrl_ct == 1)? "is a control" : "are controls", sample_ct - pheno_nm_ct, (sample_ct - pheno_nm_ct == 1)? " is" : "s are");
^
plink_dosage.c:1169:105: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid batch number on line %" PRIuPTR " of --dosage list file.\n", line_idx);
^
plink_dosage.c:1175:119: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --dosage list file has fewer tokens than expected.\n", line_idx);
^
plink_dosage.c:1187:119: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --dosage list file has fewer tokens than expected.\n", line_idx);
^
plink_dosage.c:1198:109: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --dosage list file has more tokens than expected.\n", line_idx);
^
plink_dosage.c:1211:109: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --dosage list file is pathologically long.\n", line_idx);
^
plink_dosage.c:1582:154: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, &(sep_fnames[(file_idx + file_idx_start) * max_sepheader_len]));
^
plink_dosage.c:1590:169: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of %s has fewer tokens than expected.\n", line_idx, &(sep_fnames[(file_idx + file_idx_start) * max_sepheader_len]));
^
plink_dosage.c:1736:153: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of %s has an excessively long variant ID.\n", line_idx, &(fnames[(file_idx + file_idx_start) * max_fn_len]));
^
plink_dosage.c:1781:233: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Variant ID mismatch between line %" PRIuPTR " of %s and line %" PRIuPTR " of %s.\n", line_idx_arr[0], &(fnames[file_idx_start * max_fn_len]), line_idx, &(fnames[(file_idx + file_idx_start) * max_fn_len]));
^
plink_dosage.c:1781:233: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
plink_dosage.c:1785:234: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Allele code mismatch between line %" PRIuPTR " of %s and line %" PRIuPTR " of %s.\n", line_idx_arr[0], &(fnames[file_idx_start * max_fn_len]), line_idx, &(fnames[(file_idx + file_idx_start) * max_fn_len]));
^
plink_dosage.c:1785:234: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
In file included from plink_dosage.c:1:0:
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_dosage.c:2345:7: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, &(fnames[(file_idx + file_idx_start) * max_fn_len]));
^
plink_dosage.c:2352:150: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of %s has fewer tokens than expected.\n", line_idx, &(fnames[(file_idx + file_idx_start) * max_fn_len]));
^
In file included from plink_family.c:1:0:
plink_family.c: In function 'int32_t mendel_error_scan(Family_info*, FILE*, long unsigned int, char*, char*, uint32_t, uint32_t, uint32_t, long unsigned int, long unsigned int*, long unsigned int*, long unsigned int*, char*, long unsigned int, char**, long unsigned int, long unsigned int, long unsigned int*, long unsigned int*, long unsigned int*, long unsigned int*, long unsigned int*, char*, long unsigned int, char*, long unsigned int, char*, long unsigned int, uint32_t, Chrom_info*, uint32_t)':
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_family.c:1201:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("%u variant%s and %" PRIuPTR " %s excluded.\n", new_marker_exclude_ct, (new_marker_exclude_ct == 1)? "" : "s", ulii, species_str(ulii));
^
plink_family.c: In function 'int32_t tdt_poo(pthread_t*, FILE*, long unsigned int, char*, char*, double, long unsigned int, long unsigned int*, long unsigned int, char*, long unsigned int, uint32_t, char**, long unsigned int, long unsigned int*, long unsigned int, long unsigned int*, uint32_t*, uint32_t, uint32_t, char*, long unsigned int, Chrom_info*, uint32_t, Family_info*, long unsigned int*, long unsigned int*, char*, double*, uint32_t*, long unsigned int)':
plink_family.c:1919:36: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=]
printf("\b\b%" PRIuPTR "%%", pct);
^
plink_family.c: In function 'int32_t tdt(pthread_t*, FILE*, long unsigned int, char*, char*, double, double, double, double, uint32_t, double, long unsigned int, long unsigned int*, long unsigned int, char*, long unsigned int, uint32_t, uint32_t*, char**, long unsigned int, long unsigned int*, long unsigned int, long unsigned int*, long unsigned int, uint32_t, long unsigned int*, long unsigned int*, long unsigned int*, long unsigned int*, long unsigned int*, char*, long unsigned int, char*, long unsigned int, char*, long unsigned int, Chrom_info*, uint32_t, Family_info*)':
plink_family.c:2446:36: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=]
printf("\b\b%" PRIuPTR "%%", pct);
^
In file included from plink_family.c:1:0:
plink_family.c: In function 'int32_t qfam(pthread_t*, FILE*, long unsigned int, char*, char*, long unsigned int, long unsigned int*, long unsigned int, char*, long unsigned int, uint32_t, uint32_t*, char**, long unsigned int*, long unsigned int, long unsigned int*, long unsigned int, Aperm_info*, long unsigned int*, double*, long unsigned int*, long unsigned int*, long unsigned int*, char*, long unsigned int, char*, long unsigned int, char*, long unsigned int, Chrom_info*, uint32_t, uint32_t, Family_info*)':
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_family.c:3488:3: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("--qfam-%s: Permuting %" PRIuPTR " families/singletons, and including %u %s in linear regression.\n", flag_suffix, fss_ct, lm_ct, g_species_plural);
^
plink_filter.c: In function 'int32_t keep_or_remove(char*, char*, long unsigned int, long unsigned int, uint32_t*, long unsigned int, long unsigned int*, long unsigned int*, uint32_t)':
plink_filter.c:84:130: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --%s file is pathologically long.\n", line_idx, keep_or_remove_flag_str(flags));
^
plink_filter.c:93:133: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --%s file has fewer tokens than expected.\n", line_idx, keep_or_remove_flag_str(flags));
^
In file included from plink_filter.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_filter.c:149:3: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--%s: %" PRIuPTR " %s remaining.\n", keep_or_remove_flag_str(flags), unfiltered_ct, species_str(unfiltered_ct));
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_filter.c:152:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Warning: At least %" PRIuPTR " duplicate ID%s in --%s file.\n", duplicate_ct, (duplicate_ct == 1)? "" : "s", keep_or_remove_flag_str(flags));
^
plink_filter.c: In function 'int32_t extract_exclude_flag_norange(char*, uint32_t*, uint32_t, uint32_t, char*, long unsigned int, long unsigned int, long unsigned int*, long unsigned int*)':
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_filter.c:319:3: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--%s: %" PRIuPTR " variant%s remaining.\n", do_exclude? "exclude" : "extract", unfiltered_marker_ct, (unfiltered_marker_ct == 1)? "" : "s");
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_filter.c:322:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Warning: At least %" PRIuPTR " duplicate ID%s in --%s file.\n", duplicate_ct, (duplicate_ct == 1)? "" : "s", do_exclude? "exclude" : "extract");
^
plink_filter.c: In function 'int32_t filter_attrib(char*, char*, uint32_t*, uint32_t, char*, long unsigned int, long unsigned int, long unsigned int*, long unsigned int*)':
plink_filter.c:507:96: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR" of --attrib file is pathologically long.\n", line_idx);
^
In file included from plink_filter.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_filter.c:568:3: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--attrib: %" PRIuPTR " variant%s remaining.\n", include_ct, (include_ct == 1)? "" : "s");
^
plink_filter.c: In function 'int32_t filter_attrib_sample(char*, char*, char*, long unsigned int, long unsigned int, uint32_t*, long unsigned int, long unsigned int*, long unsigned int*)':
plink_filter.c:760:102: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR" of --attrib-indiv file is pathologically long.\n", line_idx);
^
plink_filter.c:770:117: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --attrib-indiv file has fewer tokens than\nexpected.\n", line_idx);
^
In file included from plink_filter.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_filter.c:822:3: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--attrib-indiv: %" PRIuPTR " %s remaining.\n", include_ct, species_str(include_ct));
^
plink_filter.c: In function 'int32_t filter_qual_scores(Two_col_params*, double, double, uint32_t*, uint32_t, char*, long unsigned int, long unsigned int, long unsigned int*, long unsigned int*)':
plink_filter.c:904:109: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --qual-scores file is pathologically long.\n", line_idx);
^
plink_filter.c:950:174: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--qual-scores: %" PRIuPTR " variant%s remaining, %" PRIuPTR " ID%s missing.\n", marker_ct, (marker_ct == 1)? "" : "s", miss_ct, (miss_ct == 1)? "" : "s");
^
plink_filter.c:950:174: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
plink_filter.c:952:112: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--qual-scores: %" PRIuPTR " variant%s remaining.\n", marker_ct, (marker_ct == 1)? "" : "s");
^
plink_filter.c:963:113: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --qual-scores file has fewer tokens than expected.\n", line_idx);
^
In file included from plink_filter.c:1:0:
plink_filter.c: In function 'int32_t load_oblig_missing(FILE*, long unsigned int, long unsigned int, long unsigned int*, long unsigned int, char*, long unsigned int, char*, long unsigned int, long unsigned int, uint32_t*, long unsigned int, long unsigned int*, long unsigned int*, Chrom_info*, Oblig_missing_info*)':
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_filter.c:1111:7: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, om_ip->sample_fname);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_filter.c:1119:7: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s has fewer tokens than expected.\n", line_idx, om_ip->sample_fname);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_filter.c:1237:7: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, om_ip->marker_fname);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_filter.c:1250:9: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s has fewer tokens than expected.\n", line_idx, om_ip->marker_fname);
^
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_filter.c:1274:5: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("Warning: %" PRIuPTR " entr%s in %s had block IDs missing from %s.\n", missing_cluster_ct, (missing_cluster_ct == 1)? "y" : "ies", om_ip->marker_fname, om_ip->sample_fname);
^
plink_filter.c: In function 'int32_t filter_samples_file(char*, char*, long unsigned int, long unsigned int, uint32_t*, long unsigned int, long unsigned int*, long unsigned int*, char*, uint32_t)':
plink_filter.c:1382:102: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --filter file is pathologically long.\n", line_idx);
^
In file included from plink_filter.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_filter.c:1417:3: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--filter: %" PRIuPTR " %s remaining.\n", include_ct, species_str(include_ct));
^
plink_filter.c:1432:108: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --filter file has fewer tokens than expected.\n", line_idx);
^
plink_glm.c: In function 'int32_t glm_scan_conditions(char*, char*, long unsigned int, long unsigned int*, long unsigned int, char*, long unsigned int, Chrom_info*, uint32_t, long unsigned int*, FILE*, long unsigned int, long unsigned int, long unsigned int*, long unsigned int*, long unsigned int*, long unsigned int*, uint32_t**, long unsigned int*, long unsigned int*)':
plink_glm.c:340:112: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --condition-list file is pathologically long.\n", line_idx);
^
plink_glm.c:374:198: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--condition-list: %" PRIuPTR " of %" PRIuPTR " variant ID%s loaded from %s.\n", condition_ct, condition_ct + miss_ct, (condition_ct + miss_ct == 1)? "" : "s", condition_fname);
^
plink_glm.c:374:198: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
plink_glm.c:376:148: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--condition-list: %" PRIuPTR " variant ID%s loaded from %s.\n", condition_ct, (condition_ct == 1)? "" : "s", condition_fname);
^
In file included from plink_homozyg.c:1:0:
plink_homozyg.c: In function 'int32_t calc_homozyg(Homozyg_info*, FILE*, long unsigned int, uint32_t, long unsigned int, long unsigned int*, char*, long unsigned int, uint32_t, char**, long unsigned int, long unsigned int*, Chrom_info*, uint32_t*, long unsigned int, long unsigned int, long unsigned int*, char*, uint32_t, uint32_t, long unsigned int, char*, char*, long unsigned int*, long unsigned int*, double*, char*, long unsigned int*)':
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_homozyg.c:2720:3: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--homozyg: Scan complete, found %" PRIuPTR " ROH.\n", roh_ct);
^
In file included from plink_ld.c:1:0:
plink_ld.c: In function 'int32_t ld_prune(Ld_info*, FILE*, long unsigned int, long unsigned int, long unsigned int, long unsigned int*, long unsigned int*, char*, long unsigned int, Chrom_info*, double*, uint32_t*, long unsigned int, long unsigned int*, long unsigned int*, char*, char*, uint32_t)':
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_ld.c:833:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--indep%s: Ignoring %" PRIuPTR " chromosome 0 variant%s.\n", pairwise? "-pairwise" : "", ulii, (ulii == 1)? "" : "s");
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_ld.c:1270:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Pruned %" PRIuPTR " variant%s from chromosome %u, leaving %" PRIuPTR ".\n", cur_exclude_ct, (cur_exclude_ct == 1)? "" : "s", uii, chrom_info_ptr->chrom_end[uii] - chrom_info_ptr->chrom_start[uii] - popcount_bit_idx(marker_exclude, chrom_info_ptr->chrom_start[uii], chrom_info_ptr->chrom_end[uii]) - cur_exclude_ct);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 6 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_ld.c:1270:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Pruned %" PRIuPTR " variant%s from chromosome %u, leaving %" PRIuPTR ".\n", cur_exclude_ct, (cur_exclude_ct == 1)? "" : "s", uii, chrom_info_ptr->chrom_end[uii] - chrom_info_ptr->chrom_start[uii] - popcount_bit_idx(marker_exclude, chrom_info_ptr->chrom_start[uii], chrom_info_ptr->chrom_end[uii]) - cur_exclude_ct);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_ld.c:1277:3: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Pruning complete. %u of %" PRIuPTR " variants removed.\n", tot_exclude_ct, marker_ct);
^
plink_ld.c: In function 'int32_t flipscan(Ld_info*, FILE*, long unsigned int, long unsigned int, long unsigned int, long unsigned int*, long unsigned int*, char*, long unsigned int, uint32_t, char**, long unsigned int, Chrom_info*, double*, uint32_t*, long unsigned int, long unsigned int*, long unsigned int*, long unsigned int*, long unsigned int*, char*, char*, uint32_t)':
plink_ld.c:1821:40: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=]
printf("\b\b%" PRIuPTR "%%", pct);
^
plink_ld.c: In function 'int32_t ld_report_matrix(pthread_t*, Ld_info*, FILE*, long unsigned int, long unsigned int, long unsigned int*, long unsigned int*, long unsigned int, long unsigned int*, uint32_t, uint32_t, long unsigned int*, long unsigned int*, long unsigned int*, long unsigned int*, char*, uint32_t)':
plink_ld.c:2499:34: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=]
printf("\b\b%" PRIuPTR "%%", pct);
^
plink_ld.c: In function 'int32_t ld_report_dprime(pthread_t*, Ld_info*, FILE*, long unsigned int, long unsigned int*, long unsigned int, long unsigned int*, long unsigned int*, long unsigned int*, long unsigned int*, long unsigned int*, char*, uint32_t, long unsigned int, long unsigned int)':
plink_ld.c:5506:34: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=]
printf("\b\b%" PRIuPTR "%%", pct);
^
plink_ld.c: In function 'int32_t ld_report_regular(pthread_t*, Ld_info*, FILE*, long unsigned int, long unsigned int, long unsigned int*, long unsigned int, long unsigned int*, uint32_t, uint32_t, long unsigned int*, long unsigned int*, long unsigned int*, long unsigned int*, char*, uint32_t)':
plink_ld.c:5998:34: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=]
printf("\b\b%" PRIuPTR "%%", pct);
^
In file included from plink_ld.c:1:0:
plink_ld.c: In function 'int32_t show_tags(Ld_info*, FILE*, long unsigned int, long unsigned int, long unsigned int, long unsigned int*, long unsigned int*, char*, long unsigned int, uint32_t, uint32_t*, Chrom_info*, long unsigned int, long unsigned int*, long unsigned int*, char*, char*, uint32_t)':
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_ld.c:6249:2: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Line %" PRIuPTR " of --show-tags file is pathologically long.\n", line_idx);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_ld.c:6260:4: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Line %" PRIuPTR " of --show-tags file has fewer tokens than expected.\n", line_idx);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_ld.c:6295:7: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Warning: %" PRIuPTR " unrecognized variant ID%s in --show-tags file.\n", unrecog_ct, (unrecog_ct == 1)? "" : "s");
^
plink_ld.c:6503:45: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=]
printf("\b\b%" PRIuPTR "%%", pct);
^
In file included from plink_ld.c:1:0:
plink_ld.c: In function 'int32_t twolocus(Epi_info*, FILE*, long unsigned int, long unsigned int, long unsigned int, long unsigned int*, long unsigned int*, char*, long unsigned int, uint32_t, char**, Chrom_info*, long unsigned int, long unsigned int*, long unsigned int, long unsigned int*, uint32_t, uint32_t, long unsigned int*, long unsigned int*, char*, char*, uint32_t)':
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_ld.c:8028:9: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Solution #%" PRIuPTR ":\n", ulkk + 1 - ulii);
^
plink_ld.c: In function 'int32_t epistasis_linear_regression(pthread_t*, Epi_info*, FILE*, long unsigned int, long unsigned int, long unsigned int*, char*, long unsigned int, uint32_t, Chrom_info*, long unsigned int, long unsigned int, long unsigned int*, long unsigned int, long unsigned int, long unsigned int, long unsigned int*, uint32_t, long unsigned int, long long unsigned int, long unsigned int, long unsigned int*, uint32_t, double*, uint32_t, uint32_t, char*, char*, double, double, long unsigned int*, long unsigned int*, double*, uint32_t*, uint32_t*, uint32_t*, uint32_t*)':
plink_ld.c:8634:41: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=]
printf("\b\b%" PRIuPTR "%%", pct);
^
plink_ld.c: In function 'int32_t epistasis_logistic_regression(pthread_t*, Epi_info*, FILE*, long unsigned int, long unsigned int, long unsigned int*, char*, long unsigned int, uint32_t, Chrom_info*, long unsigned int, long unsigned int, long unsigned int*, long unsigned int, long unsigned int, long unsigned int, long unsigned int*, uint32_t, long unsigned int, long long unsigned int, long unsigned int, long unsigned int*, uint32_t, long unsigned int*, uint32_t, uint32_t, char*, char*, double, long unsigned int*, long unsigned int*, double*, uint32_t*, uint32_t*, uint32_t*, uint32_t*)':
plink_ld.c:9106:41: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=]
printf("\b\b%" PRIuPTR "%%", pct);
^
In file included from plink_ld.c:1:0:
plink_ld.c: In function 'int32_t epistasis_report(pthread_t*, Epi_info*, FILE*, long unsigned int, long unsigned int, long unsigned int, long unsigned int*, long unsigned int*, char*, long unsigned int, uint32_t*, uint32_t, Chrom_info*, long unsigned int, long unsigned int*, uint32_t, uint32_t, long unsigned int*, double*, uint32_t, uint32_t, char*, char*, double, double, Set_info*)':
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_ld.c:9381:7: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--%sepistasis: Skipping %" PRIuPTR " monomorphic/non-autosomal site%s.\n", is_fast? "fast-" : "", marker_ct2 - ulii, (marker_ct2 - ulii == 1)? "" : "s");
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_ld.c:9383:7: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--%sepistasis: Skipping %" PRIuPTR " site%s due to --je-cellmin setting.\n", is_fast? "fast-" : "", marker_ct2 - ulii, (marker_ct2 - ulii == 1)? "" : "s");
^
plink_ld.c:10048:36: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=]
printf("\b\b%" PRIuPTR "%%", pct);
^
In file included from plink_ld.c:1:0:
plink_ld.c: In function 'int32_t indep_pairphase(Ld_info*, FILE*, long unsigned int, long unsigned int, long unsigned int, long unsigned int*, long unsigned int*, char*, long unsigned int, Chrom_info*, double*, uint32_t*, long unsigned int, long unsigned int*, long unsigned int*, char*, char*, uint32_t)':
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_ld.c:10280:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--indep-pairphase: Ignoring %" PRIuPTR " chromosome 0 variant%s.\n", ulii, (ulii == 1)? "" : "s");
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_ld.c:10550:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Pruned %" PRIuPTR " variant%s from chromosome %u, leaving %" PRIuPTR ".\n", cur_exclude_ct, (cur_exclude_ct == 1)? "" : "s", uii, chrom_info_ptr->chrom_end[uii] - chrom_info_ptr->chrom_start[uii] - popcount_bit_idx(marker_exclude, chrom_info_ptr->chrom_start[uii], chrom_info_ptr->chrom_end[uii]) - cur_exclude_ct);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 6 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_ld.c:10550:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Pruned %" PRIuPTR " variant%s from chromosome %u, leaving %" PRIuPTR ".\n", cur_exclude_ct, (cur_exclude_ct == 1)? "" : "s", uii, chrom_info_ptr->chrom_end[uii] - chrom_info_ptr->chrom_start[uii] - popcount_bit_idx(marker_exclude, chrom_info_ptr->chrom_start[uii], chrom_info_ptr->chrom_end[uii]) - cur_exclude_ct);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_ld.c:10557:3: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Pruning complete. %u of %" PRIuPTR " variants removed.\n", tot_exclude_ct, marker_ct);
^
plink_ld.c: In function 'int32_t epi_summary_merge(Epi_info*, char*, char*)':
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_ld.c:11006:5: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("Error: Invalid N_SIG value on line %" PRIuPTR " of %s .\n", line_idx, inprefix);
^
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_ld.c:11010:5: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("Error: Invalid N_SIG value on line %" PRIuPTR " of %s .\n", line_idx, inprefix);
^
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_ld.c:11014:5: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("Error: Invalid BEST_CHISQ value on line %" PRIuPTR " of %s .\n", line_idx, inprefix);
^
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_ld.c:11018:5: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("Error: Line %" PRIuPTR " of %s has fewer tokens than expected.\n", line_idx, inprefix);
^
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_ld.c:11022:5: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, inprefix);
^
plink_ld.c: In function 'int32_t test_mishap(FILE*, long unsigned int, char*, char*, double, long unsigned int, long unsigned int*, long unsigned int*, long unsigned int, char*, long unsigned int, uint32_t, char**, double, Chrom_info*, long unsigned int, long unsigned int*, long unsigned int)':
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_ld.c:11453:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--test-mishap: %u loc%s checked (%" PRIuPTR " skipped).\n", inspected_ct, (inspected_ct == 1)? "us" : "i", marker_ct - inspected_ct);
^
plink_ld.c: In function 'int32_t set_test_common_init(pthread_t*, FILE*, long unsigned int, char*, char*, long unsigned int, long unsigned int*, long unsigned int, char*, long unsigned int, long unsigned int*, double*, Set_info*, Chrom_info*, long unsigned int, long unsigned int*, long unsigned int*, uint32_t, uint32_t, const char*, long unsigned int*, long unsigned int**, long unsigned int**, uint32_t**, uint32_t***, long unsigned int*, uint32_t*, uint32_t***, double*, double**, double**, uint32_t**, uint32_t**, long unsigned int**, uint32_t**, uint32_t**, long unsigned int**)':
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_ld.c:12200:3: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("%s set test: Testing %" PRIuPTR " set%s with at least one significant variant.\n", flag_descrip, set_ct, (set_ct == 1)? "" : "s");
^
plink_ld.c: In function 'int32_t clump_reports(FILE*, long unsigned int, char*, char*, long unsigned int, long unsigned int*, long unsigned int, char*, long unsigned int, uint32_t, uint32_t*, char**, long unsigned int*, Chrom_info*, long unsigned int, long unsigned int*, Clump_info*, long unsigned int*, uint32_t)':
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_ld.c:12850:4: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, fname_ptr);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_ld.c:12882:2: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Negative p-value on line %" PRIuPTR " of %s.\n", line_idx, fname_ptr);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_ld.c:12908:6: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: p-value > 1 on line %" PRIuPTR " of %s.\n", line_idx, fname_ptr);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_ld.c:13801:7: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("%" PRIuPTR " top variant ID%s missing; see the end of the .clumped file.\n", missing_variant_ct, (missing_variant_ct == 1)? "" : "s");
^
plink_ld.c:13808:138: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=]
printf("%" PRIuPTR " more top variant ID%s missing; see log file.\n", missing_variant_ct - 3, (missing_variant_ct == 4)? "" : "s");
^
plink_misc.c: In function 'int32_t makepheno_load(FILE*, char*, long unsigned int, char*, long unsigned int, uint32_t*, long unsigned int*, long unsigned int**)':
plink_misc.c:174:106: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --make-pheno file is pathologically long.\n", line_idx);
^
plink_misc.c:182:114: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --make-pheno file has fewer tokens than expected.\n", line_idx);
^
plink_misc.c: In function 'int32_t load_pheno(FILE*, long unsigned int, long unsigned int, char*, long unsigned int, uint32_t*, int32_t, uint32_t, uint32_t, char*, long unsigned int*, long unsigned int**, double**, char*, long unsigned int)':
plink_misc.c:271:96: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --pheno file is pathologically long.\n", line_idx);
^
plink_misc.c:336:113: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --pheno file has fewer tokens than expected.\n", line_idx);
^
plink_misc.c:399:107: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --pheno file has fewer tokens than expected.\n", line_idx);
^
plink_misc.c: In function 'int32_t apply_cm_map(char*, char*, long unsigned int, long unsigned int*, uint32_t*, double*, Chrom_info*)':
plink_misc.c:539:104: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --cm-map file is pathologically long.\n", line_idx);
^
plink_misc.c:552:99: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid bp coordinate on line %" PRIuPTR " of --cm-map file.\n", line_idx);
^
plink_misc.c:564:106: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid centimorgan position on line %" PRIuPTR " of --cm-map file.\n", line_idx);
^
plink_misc.c:571:106: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid recombination rate on line %" PRIuPTR " of --cm-map file.\n", line_idx);
^
In file included from plink_misc.c:1:0:
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_misc.c:596:7: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("Warning: %" PRIuPTR " irregular line%s skipped in %s.\n", irreg_line_ct, (irreg_line_ct == 1)? "" : "s", fname_buf);
^
plink_misc.c:612:108: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --cm-map file has fewer tokens than expected.\n", line_idx);
^
plink_misc.c: In function 'int32_t update_marker_cms(Two_col_params*, uint32_t*, uint32_t, char*, long unsigned int, long unsigned int, double*)':
plink_misc.c:673:100: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --update-cm file is pathologically long.\n", line_idx);
^
plink_misc.c:710:114: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid centimorgan position on line %" PRIuPTR " of --update-cm file.\n", line_idx);
^
plink_misc.c:719:174: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--update-cm: %" PRIuPTR " value%s changed, %" PRIuPTR " variant ID%s not present.\n", hit_ct, (hit_ct == 1)? "" : "s", miss_ct, (miss_ct == 1)? "" : "s");
^
plink_misc.c:719:174: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
plink_misc.c:721:100: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--update-cm: %" PRIuPTR " value%s changed.\n", hit_ct, (hit_ct == 1)? "" : "s");
^
plink_misc.c:732:111: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --update-cm file has fewer tokens than expected.\n", line_idx);
^
plink_misc.c: In function 'int32_t update_marker_pos(Two_col_params*, uint32_t*, uint32_t, char*, long unsigned int, long unsigned int, long unsigned int*, long unsigned int*, uint32_t*, uint32_t*, Chrom_info*)':
plink_misc.c:800:108: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --update-map file is pathologically long.\n", line_idx);
^
plink_misc.c:837:108: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid bp coordinate on line %" PRIuPTR " of --update-map file.\n", line_idx);
^
plink_misc.c:852:175: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--update-map: %" PRIuPTR " value%s updated, %" PRIuPTR " variant ID%s not present.\n", hit_ct, (hit_ct == 1)? "" : "s", miss_ct, (miss_ct == 1)? "" : "s");
^
plink_misc.c:852:175: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
plink_misc.c:854:101: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--update-map: %" PRIuPTR " value%s updated.\n", hit_ct, (hit_ct == 1)? "" : "s");
^
plink_misc.c:889:112: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --update-map file has fewer tokens than expected.\n", line_idx);
^
plink_misc.c: In function 'int32_t update_marker_names(Two_col_params*, uint32_t*, uint32_t, char*, long unsigned int, long unsigned int)':
plink_misc.c:987:176: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--update-name: %" PRIuPTR " value%s updated, %" PRIuPTR " variant ID%s not present.\n", hit_ct, (hit_ct == 1)? "" : "s", miss_ct, (miss_ct == 1)? "" : "s");
^
plink_misc.c:987:176: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
plink_misc.c:989:102: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--update-name: %" PRIuPTR " value%s updated.\n", hit_ct, (hit_ct == 1)? "" : "s");
^
plink_misc.c: In function 'int32_t update_marker_alleles(char*, uint32_t*, uint32_t, char*, long unsigned int, long unsigned int, long unsigned int*, char**, long unsigned int*, char*, char*)':
plink_misc.c:1059:105: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --update-alleles file is pathologically long.\n", line_idx);
^
plink_misc.c:1147:173: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--update-alleles: %" PRIuPTR " variant%s updated, %" PRIuPTR " ID%s not present.\n", hit_ct, (hit_ct == 1)? "" : "s", miss_ct, (miss_ct == 1)? "" : "s");
^
plink_misc.c:1147:173: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
plink_misc.c:1149:107: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--update-alleles: %" PRIuPTR " variant%s updated.\n", hit_ct, (hit_ct == 1)? "" : "s");
^
In file included from plink_misc.c:1:0:
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_misc.c:1153:5: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("%" PRIuPTR " update failure%s logged to %s .\n", err_ct, (err_ct == 1)? "" : "s", outname);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_misc.c:1170:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Duplicate allele code on line %" PRIuPTR " of --update-alleles file.\n", line_idx);
^
plink_misc.c: In function 'int32_t flip_strand(char*, uint32_t*, uint32_t, char*, long unsigned int, long unsigned int, long unsigned int*, char**)':
plink_misc.c:1304:163: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--flip: %" PRIuPTR " SNP%s flipped, %" PRIuPTR " SNP ID%s not present.\n", hit_ct, (hit_ct == 1)? "" : "s", miss_ct, (miss_ct == 1)? "" : "s");
^
plink_misc.c:1304:163: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
plink_misc.c:1306:93: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--flip: %" PRIuPTR " SNP%s flipped.\n", hit_ct, (hit_ct == 1)? "" : "s");
^
plink_misc.c: In function 'int32_t update_sample_ids(char*, char*, long unsigned int, long unsigned int, uint32_t*, char*)':
plink_misc.c:1364:106: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --update-ids file is pathologically long.\n", line_idx);
^
plink_misc.c:1390:102: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid IID '0' on line %" PRIuPTR " of --update-ids file.\n", line_idx);
^
plink_misc.c:1400:158: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--update-ids: %" PRIuPTR " %s updated, %" PRIuPTR " ID%s not present.\n", hit_ct, species_str(hit_ct), miss_ct, (miss_ct == 1)? "" : "s");
^
plink_misc.c:1400:158: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
plink_misc.c:1402:92: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--update-ids: %" PRIuPTR " %s updated.\n", hit_ct, species_str(hit_ct));
^
plink_misc.c: In function 'int32_t update_sample_parents(char*, char*, long unsigned int, long unsigned int, uint32_t*, char*, long unsigned int, char*, long unsigned int, long unsigned int*)':
plink_misc.c:1503:162: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--update-parents: %" PRIuPTR " %s updated, %" PRIuPTR " ID%s not present.\n", hit_ct, species_str(hit_ct), miss_ct, (miss_ct == 1)? "" : "s");
^
plink_misc.c:1503:162: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
plink_misc.c:1505:96: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--update-parents: %" PRIuPTR " %s updated.\n", hit_ct, species_str(hit_ct));
^
plink_misc.c: In function 'int32_t update_sample_sexes(char*, uint32_t, char*, long unsigned int, long unsigned int, uint32_t*, long unsigned int*, long unsigned int*)':
plink_misc.c:1569:101: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --update-sex file is pathologically long.\n", line_idx);
^
plink_misc.c:1600:165: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid sex value on line %" PRIuPTR " of --update-sex file.\n(Acceptable values: 1/M = male, 2/F = female, 0 = missing.)\n", line_idx);
^
plink_misc.c:1620:158: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--update-sex: %" PRIuPTR " %s updated, %" PRIuPTR " ID%s not present.\n", hit_ct, species_str(hit_ct), miss_ct, (miss_ct == 1)? "" : "s");
^
plink_misc.c:1620:158: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
plink_misc.c:1622:92: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--update-sex: %" PRIuPTR " %s updated.\n", hit_ct, species_str(hit_ct));
^
plink_misc.c:1637:112: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --update-sex file has fewer tokens than expected.\n", line_idx);
^
plink_misc.c: In function 'int32_t read_external_freqs(char*, long unsigned int, long unsigned int*, long unsigned int, char*, long unsigned int, Chrom_info*, char**, double*, uint32_t*, uint32_t, double, uint32_t, double*)':
plink_misc.c:2060:102: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid het count on line %" PRIuPTR " of --read-freq file.\n", line_idx);
^
plink_misc.c:2067:106: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid hap. A1 count on line %" PRIuPTR " of --read-freq file.\n", line_idx);
^
plink_misc.c:2071:106: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid hap. A2 count on line %" PRIuPTR " of --read-freq file.\n", line_idx);
^
plink_misc.c:2147:104: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --read-freq has more tokens than expected.\n", line_idx);
^
In file included from plink_misc.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_misc.c:2160:7: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Line %" PRIuPTR " of --read-freq file is pathologically long.\n", line_idx);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_misc.c:2171:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Invalid hom. A1 count on line %" PRIuPTR " of --read-freq file.\n", line_idx);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_misc.c:2175:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Invalid hom. A2 count on line %" PRIuPTR " of --read-freq file.\n", line_idx);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_misc.c:2179:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Invalid NCHROBS value on line %" PRIuPTR " of --read-freq file.\n", line_idx);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_misc.c:2183:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Invalid MAF on line %" PRIuPTR " of --read-freq file.\n", line_idx);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_misc.c:2187:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: A1 and A2 alleles match on line %" PRIuPTR " of --read-freq file.\n", line_idx);
^
plink_misc.c:2191:106: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid chromosome code on line %" PRIuPTR" of --read-freq file.\n", line_idx);
^
In file included from plink_misc.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_misc.c:2198:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Line %" PRIuPTR " of --read-freq file has fewer tokens than expected.\n", line_idx);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_misc.c:2205:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Allele(s) on line %" PRIuPTR " of --read-freq file don't match loaded\nvalues.\n", line_idx);
^
plink_misc.c: In function 'int32_t load_ax_alleles(Two_col_params*, long unsigned int, long unsigned int*, long unsigned int, char**, long unsigned int*, long unsigned int*, char*, long unsigned int, double*, uint32_t)':
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_misc.c:2270:2: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, axalleles->fname);
^
plink_misc.c: In function 'int32_t sexcheck(FILE*, long unsigned int, char*, char*, long unsigned int, long unsigned int*, long unsigned int, long unsigned int*, long unsigned int, char*, uint32_t, uint32_t, long unsigned int, long unsigned int*, long unsigned int*, long long unsigned int, double, double, uint32_t, uint32_t, Chrom_info*, double*, uint32_t*)':
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_misc.c:3058:7: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("--impute-sex: %" PRIuPTR " Xchr and %" PRIuPTR " Ychr variant(s) scanned, all sexes imputed. Report written to %s .\n", x_variant_ct, ytotal, outname);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_misc.c:3058:7: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("--impute-sex: %" PRIuPTR " Xchr and %" PRIuPTR " Ychr variant(s) scanned, all sexes imputed. Report written to %s .\n", x_variant_ct, ytotal, outname);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_misc.c:3060:7: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("--impute-sex: %" PRIuPTR " Xchr and %" PRIuPTR " Ychr variant(s) scanned, %" PRIuPTR "/%" PRIuPTR " sex%s imputed. Report written to %s .\n", x_variant_ct, ytotal, (sample_ct - gender_unk_ct), sample_ct, (sample_ct == 1)? "" : "es", outname);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_misc.c:3060:7: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("--impute-sex: %" PRIuPTR " Xchr and %" PRIuPTR " Ychr variant(s) scanned, %" PRIuPTR "/%" PRIuPTR " sex%s imputed. Report written to %s .\n", x_variant_ct, ytotal, (sample_ct - gender_unk_ct), sample_ct, (sample_ct == 1)? "" : "es", outname);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_misc.c:3060:7: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("--impute-sex: %" PRIuPTR " Xchr and %" PRIuPTR " Ychr variant(s) scanned, %" PRIuPTR "/%" PRIuPTR " sex%s imputed. Report written to %s .\n", x_variant_ct, ytotal, (sample_ct - gender_unk_ct), sample_ct, (sample_ct == 1)? "" : "es", outname);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 6 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_misc.c:3060:7: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("--impute-sex: %" PRIuPTR " Xchr and %" PRIuPTR " Ychr variant(s) scanned, %" PRIuPTR "/%" PRIuPTR " sex%s imputed. Report written to %s .\n", x_variant_ct, ytotal, (sample_ct - gender_unk_ct), sample_ct, (sample_ct == 1)? "" : "es", outname);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_misc.c:3065:7: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("--check-sex: %" PRIuPTR " Xchr and %" PRIuPTR " Ychr variant(s) scanned, no problems detected. Report written to %s .\n", x_variant_ct, ytotal, outname);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_misc.c:3065:7: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("--check-sex: %" PRIuPTR " Xchr and %" PRIuPTR " Ychr variant(s) scanned, no problems detected. Report written to %s .\n", x_variant_ct, ytotal, outname);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_misc.c:3067:7: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("--check-sex: %" PRIuPTR " Xchr and %" PRIuPTR " Ychr variant(s) scanned, %u problem%s detected. Report written to %s .\n", x_variant_ct, ytotal, problem_ct, (problem_ct == 1)? "" : "s", outname);
^
plink_common.h:798:56: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
#define LOGPREPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0);
^
plink_misc.c:3067:7: note: in expansion of macro 'LOGPREPRINTFWW'
LOGPREPRINTFWW("--check-sex: %" PRIuPTR " Xchr and %" PRIuPTR " Ychr variant(s) scanned, %u problem%s detected. Report written to %s .\n", x_variant_ct, ytotal, problem_ct, (problem_ct == 1)? "" : "s", outname);
^
plink_misc.c: In function 'int32_t het_report(FILE*, long unsigned int, char*, char*, long unsigned int, long unsigned int*, long unsigned int, long unsigned int, long unsigned int*, long unsigned int, char*, uint32_t, uint32_t, long unsigned int, long unsigned int*, Chrom_info*, double*)':
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_misc.c:3697:3: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("--het%s: %" PRIuPTR " variant%s scanned, report written to %s .\n", loadbuf_f? " small-sample" : "", marker_ct, (marker_ct == 1)? "" : "s", outname);
^
plink_misc.c: In function 'int32_t fst_report(FILE*, long unsigned int, char*, char*, long unsigned int, long unsigned int*, long unsigned int, char*, long unsigned int, uint32_t*, Chrom_info*, long unsigned int, long unsigned int*, long unsigned int*, long unsigned int*, long unsigned int, uint32_t*, uint32_t*)':
plink_common.h:803:54: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW5(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 5); logprintb();
^
plink_misc.c:3848:3: note: in expansion of macro 'LOGPRINTFWW5'
LOGPRINTFWW5("Writing --fst report (%" PRIuPTR " populations) to %s ... ", cluster_ct, outname);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_misc.c:3968:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("%" PRIuPTR " marker%s (%u excluded).\n", marker_ct, (marker_ct == 1)? " with a valid Fst estimate" : "s with valid Fst estimates", skipped_marker_ct);
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_misc.c:3970:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("%" PRIuPTR " marker%s.\n", marker_ct, (marker_ct == 1)? " with a valid Fst estimate" : "s with valid Fst estimates");
^
plink_misc.c: In function 'int32_t score_report(Score_info*, FILE*, long unsigned int, long unsigned int, long unsigned int, long unsigned int*, long unsigned int*, char*, long unsigned int, char**, double*, long unsigned int, long unsigned int, long unsigned int*, char*, uint32_t, uint32_t, long unsigned int, long unsigned int*, long unsigned int*, long unsigned int*, double*, char*, uint32_t, Chrom_info*, char*, char*)':
plink_misc.c:4204:103: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --score file is pathologically long.\n", line_idx);
^
In file included from plink_misc.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_misc.c:4226:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Warning: %" PRIuPTR " line%s skipped in --score file.\n", miss_ct, (miss_ct == 1)? "" : "s");
^
plink_misc.c:4299:111: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --q-score-range data file is pathologically long.\n", line_idx);
^
In file included from plink_misc.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_misc.c:4334:7: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Warning: %" PRIuPTR " line%s skipped in --q-score-range data file.\n", miss_ct, (miss_ct == 1)? "" : "s");
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_misc.c:4383:2: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--score: %" PRIuPTR " range%s processed", range_ct, (range_ct == 1)? "" : "s");
^
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_misc.c:4385:4: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF(" (%" PRIuPTR " empty range%s skipped)", range_skip, (range_skip == 1)? "" : "s");
^
plink_misc.c:4393:110: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --q-score-range range file is pathologically long.\n", line_idx);
^
plink_misc.c:4407:119: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Excessively long range name on line %" PRIuPTR " of --q-score-range range\nfile.\n", line_idx);
^
In file included from plink_misc.c:1:0:
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_misc.c:4669:5: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("Error: Line %" PRIuPTR " of --q-score-range data file has fewer tokens than\nexpected.\n", line_idx);
^
plink_misc.c:4673:107: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --score file has fewer tokens than expected.\n", line_idx);
^
plink_misc.c: In function 'int32_t meta_analysis_open_and_read_header(const char*, char*, long unsigned int, char*, uint32_t*, long unsigned int, long unsigned int, uint32_t, uint32_t*, gzFile_s**, uint32_t*, uint32_t*, long unsigned int*, uint32_t*)':
plink_misc.c:4724:93: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, fname);
^
plink_misc.c:4805:96: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of %s has too many columns.\n", line_idx, fname);
^
plink_misc.c: In function 'int32_t meta_analysis(char*, char*, char*, char*, char*, char*, uint32_t, char*, char*, char*, double, Chrom_info*)':
plink_misc.c:5269:99: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, fname_ptr);
^
plink_misc.c:5303:109: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of %s has an excessively long variant ID.\n", line_idx, fname_ptr);
^
In file included from plink_misc.c:1:0:
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_misc.c:5459:5: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("--meta-analysis: %" PRIuPTR " problematic line%s; see %s .\n", rejected_ct, (rejected_ct == 1)? "" : "s", outname);
^
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_misc.c:5966:3: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("--meta-analysis: %" PRIuPTR " variant%s processed; results written to %s .\n", final_variant_ct, (final_variant_ct == 1)? "" : "s", outname);
^
plink_rserve.c: In function 'int32_t rserve_call(char*, uint32_t, uint32_t, FILE*, long unsigned int, long unsigned int, long unsigned int, long unsigned int*, long unsigned int*, char*, long unsigned int, char**, uint32_t*, uint32_t, Chrom_info*, long unsigned int, long unsigned int*, uint32_t, long unsigned int*, double*, uint32_t, uint32_t*, uint32_t*, long unsigned int, double*, char*, char*)':
plink_rserve.c:90:97: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of --R file is pathologically long.\n", line_idx);
^
plink_set.c: In function 'int32_t load_range_list(FILE*, uint32_t, uint32_t, uint32_t, uint32_t, uint32_t, long unsigned int, char*, long unsigned int, uint32_t*, Chrom_info*, long unsigned int*, long unsigned int*, char**, long unsigned int*, Make_set_range***, long long unsigned int**, const char*)':
plink_set.c:286:105: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of %s file is pathologically long.\n", line_idx, file_descrip);
^
plink_set.c:300:113: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of %s file has fewer tokens than expected.\n", line_idx, file_descrip);
^
plink_set.c:305:109: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid chromosome code on line %" PRIuPTR " of %s file.\n", line_idx, file_descrip);
^
plink_set.c:406:110: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of %s file is pathologically long.\n", line_idx, file_descrip);
^
plink_set.c:420:118: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of %s file has fewer tokens than expected.\n", line_idx, file_descrip);
^
plink_set.c:425:114: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid chromosome code on line %" PRIuPTR " of %s file.\n", line_idx, file_descrip);
^
plink_set.c:445:119: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid range start position on line %" PRIuPTR " of %s file.\n", line_idx, file_descrip);
^
plink_set.c:450:117: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Invalid range end position on line %" PRIuPTR " of %s file.\n", line_idx, file_descrip);
^
plink_set.c:454:134: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Range end position smaller than range start on line %" PRIuPTR " of %s file.\n", line_idx, file_descrip);
^
plink_set.c: In function 'int32_t extract_exclude_range(char*, uint32_t*, long unsigned int, long unsigned int*, long unsigned int*, uint32_t, Chrom_info*)':
plink_set.c:590:169: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "--%s range: %" PRIuPTR " variant%s excluded.\n", is_exclude? "exclude" : "extract", orig_marker_exclude_ct, (orig_marker_exclude_ct == 1)? "" : "s");
^
In file included from plink_set.c:1:0:
plink_set.c: In function 'int32_t define_sets(Set_info*, long unsigned int, long unsigned int*, uint32_t*, long unsigned int*, char*, long unsigned int, Chrom_info*)':
plink_common.h:792:51: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTF(...) sprintf(logbuf, __VA_ARGS__); logprintb();
^
plink_set.c:1587:3: note: in expansion of macro 'LOGPRINTF'
LOGPRINTF("--%sset: %" PRIuPTR " set%s defined.\n", make_set? "make-" : "", set_ct, (set_ct == 1)? "" : "s");
^
plink_set.c: In function 'int32_t annotate(Annot_info*, char*, char*, double, Chrom_info*)':
plink_set.c:2484:107: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, aip->attrib_fname);
^
In file included from plink_set.c:1:0:
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_set.c:2608:7: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("--annotate attrib: %" PRIuPTR " variant ID%s and %" PRIuPTR " unique attribute%s loaded from %s.\n", snplist_attr_ct, (snplist_attr_ct == 1)? "" : "s", attr_id_ct, (attr_id_ct == 1)? "" : "s", aip->attrib_fname);
^
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_set.c:2608:7: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("--annotate attrib: %" PRIuPTR " variant ID%s and %" PRIuPTR " unique attribute%s loaded from %s.\n", snplist_attr_ct, (snplist_attr_ct == 1)? "" : "s", attr_id_ct, (attr_id_ct == 1)? "" : "s", aip->attrib_fname);
^
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_set.c:2659:9: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("--annotate ranges: %" PRIuPTR " annotations loaded from %s (counting multi-chromosome annotations once per spanned chromosome).\n", range_ct, aip->ranges_fname);
^
plink_set.c:2872:105: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
sprintf(logbuf, "Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, aip->fname);
^
In file included from plink_set.c:1:0:
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_set.c:3120:5: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("--annotate: %" PRIuPTR " out of %" PRIuPTR " row%s annotated; new report written to %s .\n", annot_row_ct, total_row_ct, (total_row_ct == 1)? "" : "s", outname);
^
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_set.c:3120:5: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("--annotate: %" PRIuPTR " out of %" PRIuPTR " row%s annotated; new report written to %s .\n", annot_row_ct, total_row_ct, (total_row_ct == 1)? "" : "s", outname);
^
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_set.c:3122:5: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("--annotate: %" PRIuPTR " row%s annotated; new report written to %s .\n", total_row_ct, (total_row_ct == 1)? "" : "s", outname);
^
plink_set.c: In function 'int32_t gene_report(char*, char*, char*, uint32_t, char*, const char*, char*, char*, double, Chrom_info*)':
plink_common.h:800:53: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long unsigned int' [-Wformat=]
#define LOGPRINTFWW(...) sprintf(logbuf, __VA_ARGS__); wordwrap(logbuf, 0); logprintb();
^
plink_set.c:3591:7: note: in expansion of macro 'LOGPRINTFWW'
LOGPRINTFWW("Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, fname);
^
make[2]: Leaving directory '/«PKGBUILDDIR»'
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
debian/rules override_dh_install
make[1]: Entering directory '/«PKGBUILDDIR»'
# Rename binary from plink to plink1.9 to avoid name conflict
mv plink plink1.9
help2man --no-discard-stderr --name="whole genome SNP analysis" ./plink1.9 > plink1.9.1
dh_install
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_perl -a
dh_link -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/plink1.9/usr/lib/debian-med/bin/plink1.9 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/plink1.9/usr/lib/debian-med/bin/plink1.9 was not linked against libatlas.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/plink1.9/usr/lib/debian-med/bin/plink1.9 was not linked against libdl.so.2 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package `plink1.9' in `../plink1.9_1.90~b3b-150117-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../plink1.9_1.90~b3b-150117-1_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build plink1.9-1.90~b3b-150117
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20150710-1205
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
plink1.9_1.90~b3b-150117-1_armhf.changes:
─────────────────────────────────────────
Format: 1.8
Date: Thu, 27 Nov 2014 07:54:15 +0100
Source: plink1.9
Binary: plink1.9
Architecture: armhf
Version: 1.90~b3b-150117-1
Distribution: stretch-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Dylan Aïssi <bob.dybian@gmail.com>
Description:
plink1.9 - whole-genome association analysis toolset
Closes: 771154
Changes:
plink1.9 (1.90~b3b-150117-1) unstable; urgency=low
.
* New upstream release, rewrite of plink (Closes: #771154)
* Import debian/* from plink 1.07-3
* Updated debian/* for plink1.9
Checksums-Sha1:
bc5689b849c76c5bf30184b4df050ece1a970b96 675358 plink1.9_1.90~b3b-150117-1_armhf.deb
Checksums-Sha256:
b05e31f2cd19950a708f9c8e38aa15ed4eeb3e4edebb6795cbd70b92aa066fc7 675358 plink1.9_1.90~b3b-150117-1_armhf.deb
Files:
60efd5f8a4bb97a4fafbe99059a8b902 675358 science optional plink1.9_1.90~b3b-150117-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
plink1.9_1.90~b3b-150117-1_armhf.deb
────────────────────────────────────
new debian package, version 2.0.
size 675358 bytes: control archive=1285 bytes.
1232 bytes, 25 lines control
741 bytes, 10 lines md5sums
Package: plink1.9
Version: 1.90~b3b-150117-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1649
Depends: libatlas3-base, libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), liblapack3 | liblapack.so.3, libstdc++6 (>= 4.3.0), zlib1g (>= 1:1.2.6)
Section: science
Priority: optional
Homepage: https://www.cog-genomics.org/plink2/
Description: whole-genome association analysis toolset
plink expects as input the data from SNP (single nucleotide polymorphism)
chips of many individuals and their phenotypical description of a disease.
It finds associations of single or pairs of DNA variations with a phenotype
and can retrieve SNP annotation from an online source.
.
SNPs can evaluated individually or as pairs for their association with the
disease phenotypes. The joint investigation of copy number variations is
supported. A variety of statistical tests have been implemented.
.
plink1.9 is a comprehensive update of plink with new algorithms and new
methods, faster and less memory consumer than the first plink.
.
Please note: The executable was renamed to plink1.9
because of a name clash. Please read more about this
in /usr/share/doc/README.Debian.
drwxr-xr-x root/root 0 2015-07-10 12:05 ./
drwxr-xr-x root/root 0 2015-07-10 12:05 ./usr/
drwxr-xr-x root/root 0 2015-07-10 12:05 ./usr/bin/
lrwxrwxrwx root/root 0 2015-07-10 12:05 ./usr/bin/plink1.9 -> ../lib/debian-med/bin/plink1.9
drwxr-xr-x root/root 0 2015-07-10 12:04 ./usr/lib/
drwxr-xr-x root/root 0 2015-07-10 12:04 ./usr/lib/debian-med/
drwxr-xr-x root/root 0 2015-07-10 12:05 ./usr/lib/debian-med/bin/
-rwxr-xr-x root/root 1649660 2015-07-10 12:05 ./usr/lib/debian-med/bin/plink1.9
drwxr-xr-x root/root 0 2015-07-10 12:05 ./usr/share/
drwxr-xr-x root/root 0 2015-07-10 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-07-10 12:05 ./usr/share/doc/plink1.9/
-rw-r--r-- root/root 1964 2015-02-17 13:04 ./usr/share/doc/plink1.9/README.Debian
-rw-r--r-- root/root 1520 2015-02-17 13:04 ./usr/share/doc/plink1.9/changelog.Debian.gz
-rw-r--r-- root/root 7140 2015-02-17 13:04 ./usr/share/doc/plink1.9/copyright
drwxr-xr-x root/root 0 2015-07-10 12:05 ./usr/share/doc/plink1.9/examples/
-rw-r--r-- root/root 325 2015-02-17 13:04 ./usr/share/doc/plink1.9/examples/README
-rw-r--r-- root/root 267 2015-02-17 13:04 ./usr/share/doc/plink1.9/examples/expected.plink.assoc
-rw-r--r-- root/root 126 2015-02-17 13:04 ./usr/share/doc/plink1.9/examples/expected.plink.frq
-rw-r--r-- root/root 27 2014-02-11 18:07 ./usr/share/doc/plink1.9/examples/toy.map
-rw-r--r-- root/root 58 2013-01-28 05:19 ./usr/share/doc/plink1.9/examples/toy.ped
drwxr-xr-x root/root 0 2015-07-10 12:05 ./usr/share/man/
drwxr-xr-x root/root 0 2015-07-10 12:05 ./usr/share/man/man1/
-rw-r--r-- root/root 27078 2015-07-10 12:05 ./usr/share/man/man1/plink1.9.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 14596
Build-Time: 766
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 212
Job: plink1.9_1.90~b3b-150117-1
Machine Architecture: armhf
Package: plink1.9
Package-Time: 1043
Source-Version: 1.90~b3b-150117-1
Space: 14596
Status: successful
Version: 1.90~b3b-150117-1
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Finished at 20150710-1205
Build needed 00:17:23, 14596k disc space