Raspbian Package Auto-Building

Build log for plink1.9 (1.90~b3.45-170113-1) on armhf

plink1.91.90~b3.45-170113-1armhf → 2017-01-27 06:42:11

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04

+==============================================================================+
| plink1.9 1.90~b3.45-170113-1 (armhf)         Fri, 27 Jan 2017 06:28:43 +0000 |
+==============================================================================+

Package: plink1.9
Version: 1.90~b3.45-170113-1
Source Version: 1.90~b3.45-170113-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-62f63915-c7e5-4bd8-91c8-bdefb30dc28c' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9731 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.7 MB]
Fetched 21.4 MB in 37s (575 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'plink1.9' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/plink1.9.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/plink1.9.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 750 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main plink1.9 1.90~b3.45-170113-1 (dsc) [2150 B]
Get:2 http://172.17.0.1/private stretch-staging/main plink1.9 1.90~b3.45-170113-1 (tar) [729 kB]
Get:3 http://172.17.0.1/private stretch-staging/main plink1.9 1.90~b3.45-170113-1 (diff) [19.0 kB]
Fetched 750 kB in 0s (5900 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/plink1.9-jib15A/plink1.9-1.90~b3.45-170113' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/plink1.9-jib15A' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-NyfQq1/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-NyfQq1/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-NyfQq1/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-NyfQq1/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-NyfQq1/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-NyfQq1/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-NyfQq1/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-NyfQq1/apt_archive ./ Packages [435 B]
Fetched 2111 B in 0s (3374 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  fuse2fs gnupg-l10n libfuse2 manpages
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 62 not upgraded.
Need to get 776 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-NyfQq1/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [776 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 776 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13928 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any-amd64 any-i386 armel armhf mipsel)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 10), help2man, libatlas-base-dev, liblapack-dev, zlib1g-dev
Filtered Build-Depends: debhelper (>= 10), help2man, libatlas-base-dev, liblapack-dev, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-plink1.9-dummy' in '/<<BUILDDIR>>/resolver-NyfQq1/apt_archive/sbuild-build-depends-plink1.9-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-plink1.9-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-NyfQq1/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-NyfQq1/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-NyfQq1/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-NyfQq1/apt_archive ./ Sources [521 B]
Get:5 copy:/<<BUILDDIR>>/resolver-NyfQq1/apt_archive ./ Packages [605 B]
Fetched 2459 B in 0s (4121 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install plink1.9 build dependencies (apt-based resolver)
--------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  fuse2fs gnupg-l10n libfuse2 manpages
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils cpp debhelper
  dh-autoreconf dh-strip-nondeterminism file gcc gettext gettext-base gfortran
  gfortran-6 groff-base help2man intltool-debian libarchive-zip-perl
  libatlas-base-dev libatlas-dev libatlas3-base libblas-common libblas-dev
  libblas3 libbsd0 libcroco3 libffi6 libfile-stripnondeterminism-perl
  libgfortran-6-dev libgfortran3 libglib2.0-0 libicu57 liblapack-dev
  liblapack3 liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1
  libsigsegv2 libtool libunistring0 libxml2 m4 man-db po-debconf zlib1g
  zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation cpp-doc dh-make gcc-multilib manpages-dev flex bison gdb gcc-doc
  gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-6-doc
  libgfortran3-dbg libcoarrays-dev groff libblas-doc liblapack-doc
  liblapack-doc-man libtool-doc gcj-jdk m4-doc less www-browser
  libmail-box-perl
Recommended packages:
  curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
  libltdl-dev xml-core libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism file gettext gettext-base gfortran
  gfortran-6 groff-base help2man intltool-debian libarchive-zip-perl
  libatlas-base-dev libatlas-dev libatlas3-base libblas-common libblas-dev
  libblas3 libbsd0 libcroco3 libffi6 libfile-stripnondeterminism-perl
  libgfortran-6-dev libgfortran3 libglib2.0-0 libicu57 liblapack-dev
  liblapack3 liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1
  libsigsegv2 libtool libunistring0 libxml2 m4 man-db po-debconf
  sbuild-build-depends-plink1.9-dummy zlib1g-dev
The following packages will be upgraded:
  cpp gcc zlib1g
3 upgraded, 46 newly installed, 0 to remove and 59 not upgraded.
Need to get 32.9 MB/32.9 MB of archives.
After this operation, 128 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-NyfQq1/apt_archive ./ sbuild-build-depends-plink1.9-dummy 0.invalid.0 [808 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf liblocale-gettext-perl armhf 1.07-3+b1 [18.3 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.12 [178 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf zlib1g armhf 1:1.2.8.dfsg-4 [81.6 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf libmagic-mgc armhf 1:5.29-2 [221 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.29-2 [104 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.29-2 [63.1 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libicu57 armhf 57.1-5 [7427 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.4+dfsg1-2.1 [804 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-5 [733 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf cpp armhf 4:6.2.1-1 [18.5 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf gcc armhf 4:6.2.1-1 [5188 B]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 13 [15.8 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.029-2 [15.3 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.029-2 [9330 B]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.50.2-2 [2527 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-2 [131 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf debhelper all 10.2.3 [829 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 6.2.1-5+rpi1 [166 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libgfortran-6-dev armhf 6.2.1-5+rpi1 [199 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf gfortran-6 armhf 6.2.1-5+rpi1 [5414 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf gfortran armhf 4:6.2.1-1 [1340 B]
Get:39 http://172.17.0.1/private stretch-staging/main armhf help2man armhf 1.47.4 [162 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libblas-common armhf 3.7.0-1 [14.0 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf libatlas3-base armhf 3.10.3-1+rpi1 [1920 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libblas3 armhf 3.7.0-1 [107 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libblas-dev armhf 3.7.0-1 [19.0 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libatlas-dev armhf 3.10.3-1+rpi1 [65.9 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libatlas-base-dev armhf 3.10.3-1+rpi1 [2528 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf liblapack3 armhf 3.7.0-1 [1503 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf liblapack-dev armhf 3.7.0-1 [1483 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-4 [198 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 32.9 MB in 3s (10.4 MB/s)
Selecting previously unselected package liblocale-gettext-perl.
(Reading database ... 13928 files and directories currently installed.)
Preparing to unpack .../0-liblocale-gettext-perl_1.07-3+b1_armhf.deb ...
Unpacking liblocale-gettext-perl (1.07-3+b1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../1-groff-base_1.22.3-9_armhf.deb ...
Unpacking groff-base (1.22.3-9) ...
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Unpacking libbsd0:armhf (0.8.3-1) ...
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Preparing to unpack .../3-bsdmainutils_9.0.12_armhf.deb ...
Unpacking bsdmainutils (9.0.12) ...
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Preparing to unpack .../4-libpipeline1_1.4.1-2_armhf.deb ...
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Preparing to unpack .../5-zlib1g_1%3a1.2.8.dfsg-4_armhf.deb ...
Unpacking zlib1g:armhf (1:1.2.8.dfsg-4) over (1:1.2.8.dfsg-2+b1) ...
Setting up zlib1g:armhf (1:1.2.8.dfsg-4) ...
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(Reading database ... 14255 files and directories currently installed.)
Preparing to unpack .../00-man-db_2.7.6.1-2_armhf.deb ...
Unpacking man-db (2.7.6.1-2) ...
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Preparing to unpack .../01-libmagic-mgc_1%3a5.29-2_armhf.deb ...
Unpacking libmagic-mgc (1:5.29-2) ...
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Unpacking libicu57:armhf (57.1-5) ...
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Removing old gcc doc directory.
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Unpacking libatlas3-base (3.10.3-1+rpi1) ...
Selecting previously unselected package libblas3.
Preparing to unpack .../35-libblas3_3.7.0-1_armhf.deb ...
Unpacking libblas3 (3.7.0-1) ...
Selecting previously unselected package libblas-dev.
Preparing to unpack .../36-libblas-dev_3.7.0-1_armhf.deb ...
Unpacking libblas-dev (3.7.0-1) ...
Selecting previously unselected package libatlas-dev.
Preparing to unpack .../37-libatlas-dev_3.10.3-1+rpi1_armhf.deb ...
Unpacking libatlas-dev (3.10.3-1+rpi1) ...
Selecting previously unselected package libatlas-base-dev.
Preparing to unpack .../38-libatlas-base-dev_3.10.3-1+rpi1_armhf.deb ...
Unpacking libatlas-base-dev (3.10.3-1+rpi1) ...
Selecting previously unselected package liblapack3.
Preparing to unpack .../39-liblapack3_3.7.0-1_armhf.deb ...
Unpacking liblapack3 (3.7.0-1) ...
Selecting previously unselected package liblapack-dev.
Preparing to unpack .../40-liblapack-dev_3.7.0-1_armhf.deb ...
Unpacking liblapack-dev (3.7.0-1) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../41-zlib1g-dev_1%3a1.2.8.dfsg-4_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-4) ...
Selecting previously unselected package sbuild-build-depends-plink1.9-dummy.
Preparing to unpack .../42-sbuild-build-depends-plink1.9-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-plink1.9-dummy (0.invalid.0) ...
Setting up cpp (4:6.2.1-1) ...
Setting up libarchive-zip-perl (1.59-1) ...
Setting up libsigsegv2:armhf (2.10-5) ...
Setting up libblas-common (3.7.0-1) ...
Setting up libgfortran3:armhf (6.2.1-5+rpi1) ...
Setting up groff-base (1.22.3-9) ...
Setting up libgfortran-6-dev:armhf (6.2.1-5+rpi1) ...
Setting up gettext-base (0.19.8.1-1) ...
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up gcc (4:6.2.1-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libicu57:armhf (57.1-5) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-2.1) ...
Setting up libmagic-mgc (1:5.29-2) ...
Setting up libmagic1:armhf (1:5.29-2) ...
Setting up libblas3 (3.7.0-1) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Processing triggers for libc-bin (2.24-7+rpi1) ...
Setting up autotools-dev (20161112.1) ...
Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Setting up liblocale-gettext-perl (1.07-3+b1) ...
Setting up libffi6:armhf (3.2.1-6) ...
Setting up bsdmainutils (9.0.12) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up autopoint (0.19.8.1-1) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-4) ...
Setting up libfile-stripnondeterminism-perl (0.029-2) ...
Setting up libatlas3-base (3.10.3-1+rpi1) ...
update-alternatives: using /usr/lib/atlas-base/atlas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
update-alternatives: using /usr/lib/atlas-base/atlas/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up gfortran-6 (6.2.1-5+rpi1) ...
Setting up liblapack3 (3.7.0-1) ...
Setting up libglib2.0-0:armhf (2.50.2-2) ...
No schema files found: doing nothing.
Setting up autoconf (2.69-10) ...
Setting up file (1:5.29-2) ...
Setting up libcroco3:armhf (0.6.11-2) ...
Setting up automake (1:1.15-5) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up help2man (1.47.4) ...
Setting up man-db (2.7.6.1-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libtool (2.4.6-2) ...
Setting up gfortran (4:6.2.1-1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up gettext (0.19.8.1-1) ...
Setting up libblas-dev (3.7.0-1) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libatlas-dev (3.10.3-1+rpi1) ...
Setting up liblapack-dev (3.7.0-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up po-debconf (1.0.20) ...
Setting up libatlas-base-dev (3.10.3-1+rpi1) ...
update-alternatives: using /usr/lib/atlas-base/atlas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
update-alternatives: using /usr/lib/atlas-base/atlas/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up dh-autoreconf (13) ...
Setting up debhelper (10.2.3) ...
Setting up sbuild-build-depends-plink1.9-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.029-2) ...
Processing triggers for libc-bin (2.24-7+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.27.51.20161127-1 dpkg-dev_1.18.15 g++-6_6.2.1-5+rpi1 gcc-6_6.2.1-5+rpi1 libc6-dev_2.24-7+rpi1 libstdc++-4.9-dev_4.9.3-14 libstdc++-6-dev_6.2.1-5+rpi1 libstdc++6_6.2.1-5+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: acl_2.2.52-3 adduser_3.115 apt_1.4~beta1 autoconf_2.69-10 automake_1:1.15-5 autopoint_0.19.8.1-1 autotools-dev_20161112.1 base-files_9.7+rpi1 base-passwd_3.5.41 bash_4.4-2 binutils_2.27.51.20161127-1 bsdmainutils_9.0.12 bsdutils_1:2.29-1 build-essential_12.2 bzip2_1.0.6-8 coreutils_8.25-2 cpio_2.11+dfsg-6 cpp_4:6.2.1-1 cpp-6_6.2.1-5+rpi1 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2.1 debhelper_10.2.3 debianutils_4.8.1 dh-autoreconf_13 dh-strip-nondeterminism_0.029-2 diffutils_1:3.5-1 dmsetup_2:1.02.136-1 dpkg_1.18.15 dpkg-dev_1.18.15 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-2 file_1:5.29-2 findutils_4.6.0+git+20161106-1 fuse2fs_1.43.3-1 g++_4:6.1.1-1 g++-6_6.2.1-5+rpi1 gcc_4:6.2.1-1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-6_6.2.1-5+rpi1 gcc-6-base_6.2.1-5+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gfortran_4:6.2.1-1 gfortran-6_6.2.1-5+rpi1 gnupg_2.1.16-2 gnupg-agent_2.1.16-2 gnupg-l10n_2.1.16-2 gpgv_2.1.16-2 grep_2.26-1 groff-base_1.22.3-9 gzip_1.6-5 help2man_1.47.4 hostname_3.18 init_1.46 init-system-helpers_1.46 initscripts_2.88dsf-59.8 insserv_1.14.0-5.4 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_23-1 libacl1_2.2.52-3 libapparmor1_2.10.95-6 libapt-pkg4.12_1.0.9.10 libapt-pkg5.0_1.4~beta1 libarchive-zip-perl_1.59-1 libasan1_4.9.3-14 libasan3_6.2.1-5+rpi1 libassuan0_2.4.3-2 libatlas-base-dev_3.10.3-1+rpi1 libatlas-dev_3.10.3-1+rpi1 libatlas3-base_3.10.3-1+rpi1 libatomic1_6.2.1-5+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.7-1 libaudit1_1:2.6.7-1 libblas-common_3.7.0-1 libblas-dev_3.7.0-1 libblas3_3.7.0-1 libblkid1_2.29-1 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.24-7+rpi1 libc-dev-bin_2.24-7+rpi1 libc6_2.24-7+rpi1 libc6-dev_2.24-7+rpi1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.2.1-5+rpi1 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.3-2 libdb5.3_5.3.28-12 libdbus-1-3_1.10.14-1 libdebconfclient0_0.218 libdevmapper1.02.1_2:1.02.136-1 libdpkg-perl_1.18.15 libdrm2_2.4.74-1 libfakeroot_1.21-2 libfdisk1_2.29-1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.029-2 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-4.9-dev_4.9.3-14 libgcc-6-dev_6.2.1-5+rpi1 libgcc1_1:6.2.1-5+rpi1 libgcrypt20_1.7.3-2 libgdbm3_1.8.3-14 libgfortran-6-dev_6.2.1-5+rpi1 libgfortran3_6.2.1-5+rpi1 libglib2.0-0_2.50.2-2 libgmp10_2:6.1.1+dfsg-1 libgomp1_6.2.1-5+rpi1 libgpg-error0_1.25-1 libicu57_57.1-5 libidn11_1.33-1 libip4tc0_1.6.0-4 libisl15_0.17.1-1 libklibc_2.0.4-9+rpi1 libkmod2_23-1 libksba8_1.3.5-2 liblapack-dev_3.7.0-1 liblapack3_3.7.0-1 liblocale-gettext-perl_1.07-3+b1 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.29-2 libmagic1_1:5.29-2 libmount1_2.29-1 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160917-1 libncursesw5_6.0+20160917-1 libnpth0_1.3-1 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpcre3_2:8.39-2 libperl5.24_5.24.1~rc4-1 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6 libprocps3_2:3.3.9-9 libprocps6_2:3.3.12-3 libreadline7_7.0-1 libseccomp2_2.3.1-2.1 libselinux1_2.6-3 libsemanage-common_2.6-1 libsemanage1_2.6-1 libsepol1_2.6-1 libsigsegv2_2.10-5 libslang2_2.3.1-5 libsmartcols1_2.29-1 libsqlite3-0_3.15.2-1 libss2_1.43.3-1 libstdc++-4.9-dev_4.9.3-14 libstdc++-6-dev_6.2.1-5+rpi1 libstdc++6_6.2.1-5+rpi1 libsystemd0_232-6 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160917-1 libtool_2.4.6-2 libubsan0_6.2.1-5+rpi1 libudev1_232-6 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1 libxml2_2.9.4+dfsg1-2.1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.3 lsb-base_9.20161125+rpi1 m4_1.4.18-1 make_4.1-9 makedev_2.3.1-93 man-db_2.7.6.1-2 manpages_4.08-1 mawk_1.3.3-17 mount_2.29-1 multiarch-support_2.24-7+rpi1 nano_2.7.1-1 ncurses-base_6.0+20160917-1 ncurses-bin_6.0+20160917-1 passwd_1:4.2-3.3 patch_2.7.5-1 perl_5.24.1~rc4-1 perl-base_5.24.1~rc4-1 perl-modules-5.24_5.24.1~rc4-1 pinentry-curses_0.9.7-9 po-debconf_1.0.20 procps_2:3.3.12-3 raspbian-archive-keyring_20120528.2 readline-common_7.0-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-plink1.9-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 startpar_0.59-3.1 systemd_232-6 systemd-sysv_232-6 sysv-rc_2.88dsf-59.8 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1.1 tzdata_2016j-2 udev_232-6 util-linux_2.29-1 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-4 zlib1g-dev_1:1.2.8.dfsg-4

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Jan 16 22:29:44 2017 UTC
gpgv:                using RSA key 612EF1613E050F54
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./plink1.9_1.90~b3.45-170113-1.dsc
dpkg-source: info: extracting plink1.9 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking plink1.9_1.90~b3.45-170113.orig.tar.xz
dpkg-source: info: unpacking plink1.9_1.90~b3.45-170113-1.debian.tar.xz
dpkg-source: info: applying 01.Makefile_config.patch
dpkg-source: info: applying 02_Activate_Stable_Build.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-62f63915-c7e5-4bd8-91c8-bdefb30dc28c
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package plink1.9
dpkg-buildpackage: info: source version 1.90~b3.45-170113-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build plink1.9-1.90~b3.45-170113
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean
   dh_testdir
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
	make -j4 clean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
rm -f plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o plink plinkw
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
rm -f plink1.9
rm -f plink1.9.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean
   dh_clean
 debian/rules build-arch
dh build-arch
   dh_testdir -a
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
	make -j4
make[2]: Entering directory '/<<PKGBUILDDIR>>'
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 plink.c -o plink.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 plink_assoc.c -o plink_assoc.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 plink_calc.c -o plink_calc.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 plink_cluster.c -o plink_cluster.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 plink_cnv.c -o plink_cnv.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 plink_common.c -o plink_common.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 plink_data.c -o plink_data.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 plink_dosage.c -o plink_dosage.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 plink_family.c -o plink_family.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 plink_filter.c -o plink_filter.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 plink_glm.c -o plink_glm.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 plink_help.c -o plink_help.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 plink_homozyg.c -o plink_homozyg.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 plink_lasso.c -o plink_lasso.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 plink_ld.c -o plink_ld.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 plink_matrix.c -o plink_matrix.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 plink_misc.c -o plink_misc.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 plink_perm.c -o plink_perm.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 plink_rserve.c -o plink_rserve.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 plink_set.c -o plink_set.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 plink_stats.c -o plink_stats.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 SFMT.c -o SFMT.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 dcdflib.c -o dcdflib.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 pigz.c -o pigz.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 yarn.c -o yarn.o
g++ -x c++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -Wdate-time -D_FORTIFY_SOURCE=2 Rconnection.cc -o Rconnection.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 hfile.c -o hfile.o
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -DDYNAMIC_ZLIB -Wdate-time -D_FORTIFY_SOURCE=2 bgzf.c -o bgzf.o
g++ plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o  -llapack -lcblas -latlas -lm -lpthread -ldl -Wl,-z,relro -Wl,-z,now -lz -o plink
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
mv plink plink1.9
help2man --no-discard-stderr --name="whole genome SNP analysis" ./plink1.9 > plink1.9.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test -a
 fakeroot debian/rules binary-arch
dh binary-arch
   dh_testroot -a
   dh_prep -a
   dh_auto_install -a
   dh_install -a
   dh_installdocs -a
   debian/rules override_dh_installchangelogs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installchangelogs debian/upstream.changelog
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installexamples -a
   debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installman plink1.9.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/plink1.9/usr/lib/debian-med/bin/plink1.9 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/plink1.9/usr/lib/debian-med/bin/plink1.9 was not linked against libatlas.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/plink1.9/usr/lib/debian-med/bin/plink1.9 was not linked against libdl.so.2 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/plink1.9/usr/lib/debian-med/bin/plink1.9 was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
   dh_installdeb -a
   dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'plink1.9-dbgsym' in '../plink1.9-dbgsym_1.90~b3.45-170113-1_armhf.deb'.
dpkg-deb: building package 'plink1.9' in '../plink1.9_1.90~b3.45-170113-1_armhf.deb'.
 dpkg-genbuildinfo --build=any
dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../plink1.9_1.90~b3.45-170113-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build plink1.9-1.90~b3.45-170113
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-01-27T06:41:48Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


plink1.9_1.90~b3.45-170113-1_armhf.changes:
-------------------------------------------

Format: 1.8
Date: Mon, 16 Jan 2017 23:18:12 +0100
Source: plink1.9
Binary: plink1.9
Architecture: armhf
Version: 1.90~b3.45-170113-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Dylan Aïssi <bob.dybian@gmail.com>
Description:
 plink1.9   - whole-genome association analysis toolset
Changes:
 plink1.9 (1.90~b3.45-170113-1) unstable; urgency=medium
 .
   * New upstream release.
   * Refresh patch.
   * Update d/copyright: 2017.
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 84abfe84b0aa00881073dd124abe79301404076a 4934 plink1.9_1.90~b3.45-170113-1_armhf.buildinfo
 4a1ef896764ffa38c5227ff8ae9f78f95cefd49e 720828 plink1.9_1.90~b3.45-170113-1_armhf.deb
Checksums-Sha256:
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 6a71269d760b917cbd81d238acdb9c9b23b049075d218b64fc9b9e65f97007d0 4934 plink1.9_1.90~b3.45-170113-1_armhf.buildinfo
 ef8c04aa0e0563c6d4bdc5033be98270a5b4d38689b414d72a60810c32d54ab0 720828 plink1.9_1.90~b3.45-170113-1_armhf.deb
Files:
 22cdcec03b423468fd1a1272207de7d5 2084854 debug extra plink1.9-dbgsym_1.90~b3.45-170113-1_armhf.deb
 253afd64b268f5e42bb2660eb16369e9 4934 science optional plink1.9_1.90~b3.45-170113-1_armhf.buildinfo
 442935b4c5f10600111bc29da065094d 720828 science optional plink1.9_1.90~b3.45-170113-1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


plink1.9-dbgsym_1.90~b3.45-170113-1_armhf.deb
---------------------------------------------

 new debian package, version 2.0.
 size 2084854 bytes: control archive=498 bytes.
     443 bytes,    13 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: plink1.9-dbgsym
 Source: plink1.9
 Version: 1.90~b3.45-170113-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 2173
 Depends: plink1.9 (= 1.90~b3.45-170113-1)
 Section: debug
 Priority: extra
 Homepage: https://www.cog-genomics.org/plink2/
 Description: Debug symbols for plink1.9
 Auto-Built-Package: debug-symbols
 Build-Ids: f67925fb9caedfb9016cbd0bd1ed6e62fd3abf61

drwxr-xr-x root/root         0 2017-01-16 22:18 ./
drwxr-xr-x root/root         0 2017-01-16 22:18 ./usr/
drwxr-xr-x root/root         0 2017-01-16 22:18 ./usr/lib/
drwxr-xr-x root/root         0 2017-01-16 22:18 ./usr/lib/debug/
drwxr-xr-x root/root         0 2017-01-16 22:18 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2017-01-16 22:18 ./usr/lib/debug/.build-id/f6/
-rw-r--r-- root/root   2214164 2017-01-16 22:18 ./usr/lib/debug/.build-id/f6/7925fb9caedfb9016cbd0bd1ed6e62fd3abf61.debug
drwxr-xr-x root/root         0 2017-01-16 22:18 ./usr/share/
drwxr-xr-x root/root         0 2017-01-16 22:18 ./usr/share/doc/
lrwxrwxrwx root/root         0 2017-01-16 22:18 ./usr/share/doc/plink1.9-dbgsym -> plink1.9


plink1.9_1.90~b3.45-170113-1_armhf.deb
--------------------------------------

 new debian package, version 2.0.
 size 720828 bytes: control archive=1276 bytes.
    1237 bytes,    25 lines      control              
     897 bytes,    12 lines      md5sums              
 Package: plink1.9
 Version: 1.90~b3.45-170113-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1775
 Depends: libatlas3-base, libc6 (>= 2.4), libgcc1 (>= 1:3.5), liblapack3 | liblapack.so.3, libstdc++6 (>= 5), zlib1g (>= 1:1.2.6)
 Section: science
 Priority: optional
 Homepage: https://www.cog-genomics.org/plink2/
 Description: whole-genome association analysis toolset
  plink expects as input the data from SNP (single nucleotide polymorphism)
  chips of many individuals and their phenotypical description of a disease.
  It finds associations of single or pairs of DNA variations with a phenotype
  and can retrieve SNP annotation from an online source.
  .
  SNPs can evaluated individually or as pairs for their association with the
  disease phenotypes. The joint investigation of copy number variations is
  supported. A variety of statistical tests have been implemented.
  .
  plink1.9 is a comprehensive update of plink with new algorithms and new
  methods, faster and less memory consumer than the first plink.
  .
  Please note: The executable was renamed to plink1.9
  because of a name clash.  Please read more about this
  in /usr/share/doc/plink1.9/README.Debian.

drwxr-xr-x root/root         0 2017-01-16 22:18 ./
drwxr-xr-x root/root         0 2017-01-16 22:18 ./usr/
drwxr-xr-x root/root         0 2017-01-16 22:18 ./usr/bin/
lrwxrwxrwx root/root         0 2017-01-16 22:18 ./usr/bin/plink1.9 -> ../lib/debian-med/bin/plink1.9
drwxr-xr-x root/root         0 2017-01-16 22:18 ./usr/lib/
drwxr-xr-x root/root         0 2017-01-16 22:18 ./usr/lib/debian-med/
drwxr-xr-x root/root         0 2017-01-16 22:18 ./usr/lib/debian-med/bin/
-rwxr-xr-x root/root   1739460 2017-01-16 22:18 ./usr/lib/debian-med/bin/plink1.9
drwxr-xr-x root/root         0 2017-01-16 22:18 ./usr/lib/debian-med/share/
drwxr-xr-x root/root         0 2017-01-16 22:18 ./usr/lib/debian-med/share/man/
drwxr-xr-x root/root         0 2017-01-16 22:18 ./usr/lib/debian-med/share/man/man1/
lrwxrwxrwx root/root         0 2017-01-16 22:18 ./usr/lib/debian-med/share/man/man1/plink1.9.1.gz -> ../../../../../share/man/man1/plink1.9.1.gz
drwxr-xr-x root/root         0 2017-01-16 22:18 ./usr/share/
drwxr-xr-x root/root         0 2017-01-16 22:18 ./usr/share/doc/
drwxr-xr-x root/root         0 2017-01-16 22:18 ./usr/share/doc/plink1.9/
-rw-r--r-- root/root       680 2017-01-16 22:18 ./usr/share/doc/plink1.9/README.Debian
-rw-r--r-- root/root      2088 2017-01-16 22:18 ./usr/share/doc/plink1.9/changelog.Debian.gz
-rw-r--r-- root/root     12048 2017-01-16 22:18 ./usr/share/doc/plink1.9/changelog.gz
-rw-r--r-- root/root      7739 2017-01-16 22:18 ./usr/share/doc/plink1.9/copyright
drwxr-xr-x root/root         0 2017-01-16 22:18 ./usr/share/doc/plink1.9/examples/
-rw-r--r-- root/root       325 2017-01-16 22:18 ./usr/share/doc/plink1.9/examples/README
-rw-r--r-- root/root       267 2017-01-16 22:18 ./usr/share/doc/plink1.9/examples/expected.plink.assoc
-rw-r--r-- root/root       126 2017-01-16 22:18 ./usr/share/doc/plink1.9/examples/expected.plink.frq
-rw-r--r-- root/root       550 2017-01-16 22:18 ./usr/share/doc/plink1.9/examples/run-sample-analysis
-rw-r--r-- root/root        27 2016-06-17 18:37 ./usr/share/doc/plink1.9/examples/toy.map
-rw-r--r-- root/root        58 2016-06-17 18:37 ./usr/share/doc/plink1.9/examples/toy.ped
drwxr-xr-x root/root         0 2017-01-16 22:18 ./usr/share/man/
drwxr-xr-x root/root         0 2017-01-16 22:18 ./usr/share/man/man1/
-rw-r--r-- root/root     27912 2017-01-16 22:18 ./usr/share/man/man1/plink1.9.1.gz


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 31032
Build-Time: 370
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 337
Job: plink1.9_1.90~b3.45-170113-1
Machine Architecture: armhf
Package: plink1.9
Package-Time: 785
Source-Version: 1.90~b3.45-170113-1
Space: 31032
Status: successful
Version: 1.90~b3.45-170113-1
--------------------------------------------------------------------------------
Finished at 2017-01-27T06:41:48Z
Build needed 00:13:05, 31032k disc space