Raspbian Package Auto-Building

Build log for pirs (2.0.2+dfsg-6) on armhf

pirs2.0.2+dfsg-6armhf → 2017-09-19 05:24:49

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03

+==============================================================================+
| pirs 2.0.2+dfsg-6 (armhf)                    Tue, 19 Sep 2017 05:14:05 +0000 |
+==============================================================================+

Package: pirs
Version: 2.0.2+dfsg-6
Source Version: 2.0.2+dfsg-6
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-85bfb70c-af9f-4821-a8b9-d2effa9225ae' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.2 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.1 MB]
Fetched 22.3 MB in 25s (869 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'pirs' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/pirs.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/pirs.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 6038 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main pirs 2.0.2+dfsg-6 (dsc) [2095 B]
Get:2 http://172.17.0.1/private buster-staging/main pirs 2.0.2+dfsg-6 (tar) [6029 kB]
Get:3 http://172.17.0.1/private buster-staging/main pirs 2.0.2+dfsg-6 (diff) [6512 B]
Fetched 6038 kB in 1s (5524 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pirs-Y9SePG/pirs-2.0.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pirs-Y9SePG' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-t6ktyJ/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-t6ktyJ/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-t6ktyJ/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-t6ktyJ/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-t6ktyJ/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-t6ktyJ/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-t6ktyJ/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-t6ktyJ/apt_archive ./ Packages [434 B]
Fetched 2110 B in 0s (3182 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 60 not upgraded.
Need to get 776 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-t6ktyJ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [776 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 776 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15017 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 10), libboost-dev, zlib1g-dev, libgzstream-dev
Filtered Build-Depends: debhelper (>= 10), libboost-dev, zlib1g-dev, libgzstream-dev
dpkg-deb: building package 'sbuild-build-depends-pirs-dummy' in '/<<BUILDDIR>>/resolver-t6ktyJ/apt_archive/sbuild-build-depends-pirs-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-pirs-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-t6ktyJ/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-t6ktyJ/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-t6ktyJ/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-t6ktyJ/apt_archive ./ Sources [512 B]
Get:5 copy:/<<BUILDDIR>>/resolver-t6ktyJ/apt_archive ./ Packages [593 B]
Fetched 2438 B in 0s (3854 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install pirs build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
  intltool-debian libarchive-zip-perl libboost-dev libboost1.62-dev libbsd0
  libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libgzstream-dev
  libgzstream0 libicu57 libmagic-mgc libmagic1 libpipeline1 libsigsegv2
  libtimedate-perl libtool libxml2 m4 man-db po-debconf zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
  libboost-doc libboost1.62-doc libboost-atomic1.62-dev
  libboost-chrono1.62-dev libboost-context1.62-dev libboost-coroutine1.62-dev
  libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev
  libboost-filesystem1.62-dev libboost-graph1.62-dev
  libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev
  libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev
  libboost-mpi1.62-dev libboost-mpi-python1.62-dev
  libboost-program-options1.62-dev libboost-python1.62-dev
  libboost-random1.62-dev libboost-regex1.62-dev
  libboost-serialization1.62-dev libboost-signals1.62-dev
  libboost-system1.62-dev libboost-test1.62-dev libboost-thread1.62-dev
  libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev
  libboost1.62-tools-dev libmpfrc++-dev libntl-dev libtool-doc gfortran
  | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl
Recommended packages:
  curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
  intltool-debian libarchive-zip-perl libboost-dev libboost1.62-dev libbsd0
  libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libgzstream-dev
  libgzstream0 libicu57 libmagic-mgc libmagic1 libpipeline1 libsigsegv2
  libtimedate-perl libtool libxml2 m4 man-db po-debconf
  sbuild-build-depends-pirs-dummy zlib1g-dev
0 upgraded, 35 newly installed, 0 to remove and 60 not upgraded.
Need to get 25.9 MB of archives.
After this operation, 181 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-t6ktyJ/apt_archive ./ sbuild-build-depends-pirs-dummy 0.invalid.0 [800 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-2 [95.8 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.12+nmu1 [178 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.4.2-1 [24.2 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.32-1 [225 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.32-1 [105 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.32-1 [63.7 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-6 [7427 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-4 [609 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-2.1 [736 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 14 [15.9 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.038-1 [17.6 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.038-1 [11.1 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.54.0-1 [2650 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-1 [132 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf debhelper all 10.8 [973 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libboost1.62-dev armhf 1.62.0+dfsg-4 [7009 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libboost-dev armhf 1.62.0.1+b6 [3916 B]
Get:33 http://172.17.0.1/private buster-staging/main armhf libgzstream0 armhf 1.5+dfsg-2 [5764 B]
Get:34 http://172.17.0.1/private buster-staging/main armhf libgzstream-dev armhf 1.5+dfsg-2 [6172 B]
Get:35 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-5 [198 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 25.9 MB in 2s (9452 kB/s)
Selecting previously unselected package groff-base.
(Reading database ... 15017 files and directories currently installed.)
Preparing to unpack .../00-groff-base_1.22.3-9_armhf.deb ...
Unpacking groff-base (1.22.3-9) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../01-libbsd0_0.8.6-2_armhf.deb ...
Unpacking libbsd0:armhf (0.8.6-2) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../02-bsdmainutils_9.0.12+nmu1_armhf.deb ...
Unpacking bsdmainutils (9.0.12+nmu1) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../03-libpipeline1_1.4.2-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.2-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../04-man-db_2.7.6.1-2_armhf.deb ...
Unpacking man-db (2.7.6.1-2) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../05-libmagic-mgc_1%3a5.32-1_armhf.deb ...
Unpacking libmagic-mgc (1:5.32-1) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../06-libmagic1_1%3a5.32-1_armhf.deb ...
Unpacking libmagic1:armhf (1:5.32-1) ...
Selecting previously unselected package file.
Preparing to unpack .../07-file_1%3a5.32-1_armhf.deb ...
Unpacking file (1:5.32-1) ...
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Preparing to unpack .../08-gettext-base_0.19.8.1-4_armhf.deb ...
Unpacking gettext-base (0.19.8.1-4) ...
Selecting previously unselected package libicu57:armhf.
Preparing to unpack .../09-libicu57_57.1-6_armhf.deb ...
Unpacking libicu57:armhf (57.1-6) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../10-libxml2_2.9.4+dfsg1-4_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-4) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../11-libsigsegv2_2.11-1_armhf.deb ...
Unpacking libsigsegv2:armhf (2.11-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../12-m4_1.4.18-1_armhf.deb ...
Unpacking m4 (1.4.18-1) ...
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Unpacking autoconf (2.69-11) ...
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Preparing to unpack .../14-autotools-dev_20161112.1_all.deb ...
Unpacking autotools-dev (20161112.1) ...
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Preparing to unpack .../15-automake_1%3a1.15.1-2.1_all.deb ...
Unpacking automake (1:1.15.1-2.1) ...
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Preparing to unpack .../16-autopoint_0.19.8.1-4_all.deb ...
Unpacking autopoint (0.19.8.1-4) ...
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Preparing to unpack .../17-libtool_2.4.6-2_all.deb ...
Unpacking libtool (2.4.6-2) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../18-dh-autoreconf_14_all.deb ...
Unpacking dh-autoreconf (14) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../19-libarchive-zip-perl_1.59-1_all.deb ...
Unpacking libarchive-zip-perl (1.59-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../20-libfile-stripnondeterminism-perl_0.038-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (0.038-1) ...
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../21-libtimedate-perl_2.3000-2_all.deb ...
Unpacking libtimedate-perl (2.3000-2) ...
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Preparing to unpack .../22-dh-strip-nondeterminism_0.038-1_all.deb ...
Unpacking dh-strip-nondeterminism (0.038-1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../23-libglib2.0-0_2.54.0-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.54.0-1) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../24-libcroco3_0.6.12-1_armhf.deb ...
Unpacking libcroco3:armhf (0.6.12-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../25-gettext_0.19.8.1-4_armhf.deb ...
Unpacking gettext (0.19.8.1-4) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../26-intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../27-po-debconf_1.0.20_all.deb ...
Unpacking po-debconf (1.0.20) ...
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Preparing to unpack .../28-debhelper_10.8_all.deb ...
Unpacking debhelper (10.8) ...
Selecting previously unselected package libboost1.62-dev:armhf.
Preparing to unpack .../29-libboost1.62-dev_1.62.0+dfsg-4_armhf.deb ...
Unpacking libboost1.62-dev:armhf (1.62.0+dfsg-4) ...
Selecting previously unselected package libboost-dev:armhf.
Preparing to unpack .../30-libboost-dev_1.62.0.1+b6_armhf.deb ...
Unpacking libboost-dev:armhf (1.62.0.1+b6) ...
Selecting previously unselected package libgzstream0.
Preparing to unpack .../31-libgzstream0_1.5+dfsg-2_armhf.deb ...
Unpacking libgzstream0 (1.5+dfsg-2) ...
Selecting previously unselected package libgzstream-dev.
Preparing to unpack .../32-libgzstream-dev_1.5+dfsg-2_armhf.deb ...
Unpacking libgzstream-dev (1.5+dfsg-2) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../33-zlib1g-dev_1%3a1.2.8.dfsg-5_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-5) ...
Selecting previously unselected package sbuild-build-depends-pirs-dummy.
Preparing to unpack .../34-sbuild-build-depends-pirs-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-pirs-dummy (0.invalid.0) ...
Setting up libarchive-zip-perl (1.59-1) ...
Setting up libgzstream0 (1.5+dfsg-2) ...
Setting up libboost1.62-dev:armhf (1.62.0+dfsg-4) ...
Setting up libgzstream-dev (1.5+dfsg-2) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:armhf (2.11-1) ...
Setting up groff-base (1.22.3-9) ...
Setting up libglib2.0-0:armhf (2.54.0-1) ...
No schema files found: doing nothing.
Setting up gettext-base (0.19.8.1-4) ...
Setting up libpipeline1:armhf (1.4.2-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libicu57:armhf (57.1-6) ...
Setting up libbsd0:armhf (0.8.6-2) ...
Setting up libxml2:armhf (2.9.4+dfsg1-4) ...
Setting up libmagic-mgc (1:5.32-1) ...
Setting up libmagic1:armhf (1:5.32-1) ...
Setting up libcroco3:armhf (0.6.12-1) ...
Processing triggers for libc-bin (2.24-14) ...
Setting up autotools-dev (20161112.1) ...
Setting up libboost-dev:armhf (1.62.0.1+b6) ...
Setting up bsdmainutils (9.0.12+nmu1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up autopoint (0.19.8.1-4) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-5) ...
Setting up libfile-stripnondeterminism-perl (0.038-1) ...
Setting up gettext (0.19.8.1-4) ...
Setting up autoconf (2.69-11) ...
Setting up file (1:5.32-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up automake (1:1.15.1-2.1) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.7.6.1-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libtool (2.4.6-2) ...
Setting up po-debconf (1.0.20) ...
Setting up dh-autoreconf (14) ...
Setting up dh-strip-nondeterminism (0.038-1) ...
Setting up debhelper (10.8) ...
Setting up sbuild-build-depends-pirs-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-14) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.29-4+rpi1 dpkg-dev_1.18.24 g++-7_7.2.0-1 gcc-7_7.2.0-1 libc6-dev_2.24-14 libstdc++-7-dev_7.2.0-1 libstdc++6_7.2.0-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.116 apt_1.5~rc1 autoconf_2.69-11 automake_1:1.15.1-2.1 autopoint_0.19.8.1-4 autotools-dev_20161112.1 base-files_10+rpi1 base-passwd_3.5.43 bash_4.4-5 binutils_2.29-4+rpi1 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-2+rpi1 build-essential_12.3 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.26-3 cpio_2.11+dfsg-6 cpp_4:7.1.0-2 cpp-7_7.2.0-1 dash_0.5.8-2.5 debconf_1.5.63 debhelper_10.8 debianutils_4.8.2 dh-autoreconf_14 dh-strip-nondeterminism_0.038-1 diffutils_1:3.6-1 dirmngr_2.1.23-2 dmsetup_2:1.02.142-1 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.6-1 e2fsprogs_1.43.6-1 fakeroot_1.22-1 file_1:5.32-1 findutils_4.6.0+git+20170729-2 g++_4:7.1.0-2 g++-7_7.2.0-1 gcc_4:7.1.0-2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-7_7.2.0-1 gcc-7-base_7.2.0-1 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gnupg_2.1.23-2 gnupg-agent_2.1.23-2 gnupg-l10n_2.1.23-2 gnupg-utils_2.1.23-2 gpg_2.1.23-2 gpg-agent_2.1.23-2 gpg-wks-client_2.1.23-2 gpg-wks-server_2.1.23-2 gpgconf_2.1.23-2 gpgsm_2.1.23-2 gpgv_2.1.23-2 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 init-system-helpers_1.49 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_24-1 libacl1_2.2.52-3 libapparmor1_2.11.0-10 libapt-pkg5.0_1.5~rc1 libarchive-zip-perl_1.59-1 libasan4_7.2.0-1 libassuan0_2.4.3-3 libatomic1_7.2.0-1 libattr1_1:2.4.47-2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1+b1 libblkid1_2.29.2-2+rpi1 libboost-dev_1.62.0.1+b6 libboost1.62-dev_1.62.0+dfsg-4 libbsd0_0.8.6-2 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-14 libc-dev-bin_2.24-14 libc6_2.24-14 libc6-dev_2.24-14 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_7.2.0-1 libcilkrts5_7.2.0-1 libcomerr2_1.43.6-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4 libdb5.3_5.3.28-13+rpi1 libdbus-1-3_1.11.16+really1.10.22-1 libdebconfclient0_0.229 libdevmapper1.02.1_2:1.02.142-1 libdpkg-perl_1.18.24 libdrm-common_2.4.82-1+rpi1 libdrm2_2.4.82-1+rpi1 libfakeroot_1.22-1 libfdisk1_2.29.2-2+rpi1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.038-1 libgcc-7-dev_7.2.0-1 libgcc1_1:7.2.0-1 libgcrypt20_1.7.9-1 libgdbm3_1.8.3-14 libglib2.0-0_2.54.0-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.15-2 libgomp1_7.2.0-1 libgpg-error0_1.27-3 libgzstream-dev_1.5+dfsg-2 libgzstream0_1.5+dfsg-2 libhogweed4_3.3-1 libicu57_57.1-6 libidn11_1.33-1 libidn2-0_2.0.2-3 libip4tc0_1.6.1-2 libisl15_0.18-1 libklibc_2.0.4-9+rpi1 libkmod2_24-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.29.2-2+rpi1 libmpc3_1.0.3-1+b2 libmpfr4_3.1.6~rc1-1 libncurses5_6.0+20170715-2 libncursesw5_6.0+20170715-2 libnettle6_3.3-1 libnih-dbus1_1.0.3-8 libnih1_1.0.3-8 libnpth0_1.5-2 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-4 libperl5.24_5.24.1-7 libperl5.26_5.26.0-5 libpipeline1_1.4.2-1 libplymouth4_0.9.2-5 libpng16-16_1.6.32-1 libprocps6_2:3.3.12-3 libreadline5_5.2+dfsg-3 libreadline7_7.0-3 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.6-3 libsemanage-common_2.6-2 libsemanage1_2.6-2 libsepol1_2.6-2 libsigsegv2_2.11-1 libsmartcols1_2.29.2-2+rpi1 libsqlite3-0_3.19.3-3 libss2_1.43.6-1 libssl1.1_1.1.0f-5 libstdc++-7-dev_7.2.0-1 libstdc++6_7.2.0-1 libsystemd0_234-2.3 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170715-2 libtool_2.4.6-2 libubsan0_7.2.0-1 libudev1_234-2.3 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-2+rpi1 libxml2_2.9.4+dfsg1-4 linux-base_4.5 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.4-4.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 mawk_1.3.3-17 mount_2.29.2-2+rpi1 mountall_2.54 multiarch-support_2.24-14 ncurses-base_6.0+20170715-2 ncurses-bin_6.0+20170715-2 openssl_1.1.0f-5 passwd_1:4.4-4.1 patch_2.7.5-1 perl_5.26.0-5 perl-base_5.26.0-5 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.0-5 pinentry-curses_1.0.0-2 plymouth_0.9.2-5 po-debconf_1.0.20 procps_2:3.3.12-3 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pirs-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_234-2.3 sysvinit-utils_2.88dsf-59.9 tar_1.29b-2 tzdata_2017b-2 udev_234-2.3 util-linux_2.29.2-2+rpi1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Sep 14 08:49:14 2017 UTC
gpgv:                using RSA key 578A0494D1C646D1
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./pirs_2.0.2+dfsg-6.dsc
dpkg-source: info: extracting pirs in /<<BUILDDIR>>/pirs-2.0.2+dfsg
dpkg-source: info: unpacking pirs_2.0.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking pirs_2.0.2+dfsg-6.debian.tar.xz
dpkg-source: info: applying use_debian_packaged_libgzstream.patch
dpkg-source: info: applying Fix-spelling-of-sse2-option.patch
dpkg-source: info: applying do_not_seek_for_arial.ttf.patch
dpkg-source: info: applying Remove-mtune-compiler-flag.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-85bfb70c-af9f-4821-a8b9-d2effa9225ae
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package pirs
dpkg-buildpackage: info: source version 2.0.2+dfsg-6
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build pirs-2.0.2+dfsg
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean --sourcedirectory=src
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_auto_clean
cd src && ./srclean.sh >/dev/null 2>/dev/null || true
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
   dh_autoreconf_clean -O--sourcedirectory=src
   dh_clean -O--sourcedirectory=src
 debian/rules build-arch
dh build-arch --sourcedirectory=src
   dh_update_autotools_config -a -O--sourcedirectory=src
   debian/rules override_dh_autoreconf
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
cd src && \
mv INSTALL INSTALL.save && \
autoreconf --install && \
mv INSTALL.save INSTALL && \
cd /<<BUILDDIR>>/pirs-2.0.2+dfsg
configure.ac:9: installing './compile'
configure.ac:3: installing './install-sh'
configure.ac:3: installing './missing'
Makefile.am: installing './INSTALL'
pirs/Makefile.am:28: warning: source file 'SFMT-src-1.4/SFMT.c' is in a subdirectory,
pirs/Makefile.am:28: but option 'subdir-objects' is disabled
automake: warning: possible forward-incompatibility.
automake: At least a source file is in a subdirectory, but the 'subdir-objects'
automake: automake option hasn't been enabled.  For now, the corresponding output
automake: object file(s) will be placed in the top-level directory.  However,
automake: this behaviour will change in future Automake versions: they will
automake: unconditionally cause object files to be placed in the same subdirectory
automake: of the corresponding sources.
automake: You are advised to start using 'subdir-objects' option throughout your
automake: project, to avoid future incompatibilities.
pirs/Makefile.am: installing './depcomp'
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_auto_configure -- --enable-pirs-diploid --disable-sse2
	./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --enable-pirs-diploid --disable-sse2
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... none
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for gzopen in -lz... yes
checking Whether to include support for 'pirs diploid' command... yes
checking Whether to include support for 'pirs simulate' command... yes
checking Whether to include support for multiple threads... yes
checking for g++ option to support OpenMP... -fopenmp
checking Whether to include support for SSE2 instructions... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating pirs/Makefile
config.status: creating config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_auto_build
	make -j4
make[2]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
(CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/bash /<<BUILDDIR>>/pirs-2.0.2+dfsg/src/missing autoheader)
rm -f stamp-h1
touch config.h.in
cd . && /bin/bash ./config.status config.h
config.status: creating config.h
config.status: config.h is unchanged
make  all-recursive
make[3]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
Making all in pirs
make[4]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src/pirs'
g++ -DHAVE_CONFIG_H -I. -I..  -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra   -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o InputStream.o InputStream.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra   -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o OutputStream.o OutputStream.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra   -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o main.o main.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra   -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o util.o util.cpp
main.cpp:18:19: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
 "Compile Date:  " __DATE__ " time: " __TIME__ "\n"
                   ^~~~~~~~
main.cpp:18:38: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
 "Compile Date:  " __DATE__ " time: " __TIME__ "\n"
                                      ^~~~~~~~
util.cpp: In function 'void* xmalloc(size_t)':
util.cpp:192:65: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t {aka unsigned int}' [-Wformat=]
   fatal_error("Out of memory: tried to allocate %lu bytes", size);
                                                                 ^
util.cpp: In function 'void* xrealloc(void*, size_t)':
util.cpp:200:67: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t {aka unsigned int}' [-Wformat=]
   fatal_error("Out of memory: tried to reallocate %lu bytes", size);
                                                                   ^
g++ -DHAVE_CONFIG_H -I. -I..  -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra   -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mt19937-64.o mt19937-64.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra   -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pirs_diploid.o pirs_diploid.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra   -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o BaseCallingProfile.o BaseCallingProfile.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra   -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o GCBiasProfile.o GCBiasProfile.cpp
pirs_diploid.cpp:639:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  info("   [%#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
       ^
pirs_diploid.cpp:639:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  info("   [%#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
                     ^
pirs_diploid.cpp:639:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  info("   [%#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
                                 ^
pirs_diploid.cpp:641:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  info("    %#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
       ^
pirs_diploid.cpp:641:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  info("    %#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
                     ^
pirs_diploid.cpp:641:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  info("    %#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
                                 ^
pirs_diploid.cpp:643:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  info("    %#"PRIx64"]\n", het_type_tab[6]);
       ^
g++ -DHAVE_CONFIG_H -I. -I..  -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra   -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o IndelProfile.o IndelProfile.cpp
pirs_diploid.cpp: In function 'bool try_indel(const double*, const size_t*, const std::vector<char>&, size_t&, std::vector<char>&, bool, const char*, Counter&)':
pirs_diploid.cpp:438:20: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'uint64_t {aka long long unsigned int}' [-Wformat=]
           indel_len);
                    ^
pirs_diploid.cpp:438:20: warning: format '%zu' expects argument of type 'size_t', but argument 5 has type 'uint64_t {aka long long unsigned int}' [-Wformat=]
In file included from /usr/include/c++/7/vector:69:0,
                 from GCBiasProfile.cpp:3:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
IndelProfile.cpp: In function 'void load_indel_info_line(char*, Profile&)':
IndelProfile.cpp:117:50: warning: format '%lu' expects argument of type 'long unsigned int*', but argument 3 has type 'uint64_t* {aka long long unsigned int*}' [-Wformat=]
  } else if (sscanf(line, "Read_1_Count = %lu", &n) == 1)
                                                ~~^
IndelProfile.cpp:119:48: warning: format '%lu' expects argument of type 'long unsigned int*', but argument 3 has type 'uint64_t* {aka long long unsigned int*}' [-Wformat=]
  else if (sscanf(line, "Read_2_Count = %lu", &n) == 1)
                                              ~~^
IndelProfile.cpp: In constructor 'IndelProfile::IndelProfile(const SimulationParameters&)':
IndelProfile.cpp:165:48: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'uint64_t {aka long long unsigned int}' [-Wformat=]
  info("    read_1_count  = %lu\n", read_1_count);
                                    ~~~~~~~~~~~~^
IndelProfile.cpp:166:48: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'uint64_t {aka long long unsigned int}' [-Wformat=]
  info("    read_2_count  = %lu\n", read_2_count);
                                    ~~~~~~~~~~~~^
In file included from /usr/include/c++/7/vector:64:0,
                 from GCBiasProfile.cpp:3:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'GCBiasProfile::GCBiasProfile(const SimulationParameters&)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I..  -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra   -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o MaskQvalsByEamss.o MaskQvalsByEamss.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra   -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Profile.o Profile.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra   -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pirs_simulate.o pirs_simulate.cpp
pirs_simulate.cpp:168:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
 "                 "DEFAULT_BASE_CALLING_PROFILE"\n"
 ^
pirs_simulate.cpp:174:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
 "                 "DEFAULT_INDEL_PROFILE"\n"
 ^
pirs_simulate.cpp:180:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
 "                 "DEFAULT_GC_BIAS_PROFILE_100",\n"
 ^
pirs_simulate.cpp:181:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
 "                 "DEFAULT_GC_BIAS_PROFILE_150",\n"
 ^
pirs_simulate.cpp:182:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
 "                 "DEFAULT_GC_BIAS_PROFILE_200",\n"
 ^
pirs_simulate.cpp:672:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  out_file.printf("%cread_%d_%"PRIu64"/%d\n",
                  ^
pirs_simulate.cpp:700:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  info_log_file.printf("read_%d_%"PRIu64"/%d\t%s\t%s\t%zu\t%c\t%d\t%d\t",
                       ^
pirs_simulate.cpp:1235:10: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
     info("Simulated %"PRIu64" of %"PRIu64" read pairs\n",
          ^
pirs_simulate.cpp:1235:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
     info("Simulated %"PRIu64" of %"PRIu64" read pairs\n",
                             ^
pirs_simulate.cpp:1540:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
   insert_log.printf("%d\t%"PRIu64"\n", it->first, it->second);
                     ^
pirs_simulate.cpp:1557:2: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  "# The total number of read pairs that were simulated was %"PRIu64".\n"
  ^
pirs_simulate.cpp:1574:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
   error_log.printf("%d\t%"PRIu64"\t%g\n",
                    ^
pirs_simulate.cpp:1579:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  error_log.printf("total\t%"PRIu64"\t%g\n",
                   ^
pirs_simulate.cpp:1685:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  log_parameter(info_log, "Random seed:                      %"PRIu64"\n",
                          ^
pirs_simulate.cpp:1713:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  info("Program:        "PROGRAM "\n");
       ^
pirs_simulate.cpp:1714:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  info("Version:        "VERSION "\n");
       ^
pirs_simulate.cpp:1715:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  info("Author:         "AUTHOR "\n");
       ^
pirs_simulate.cpp:1716:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  info("Contact:        "CONTACT "\n");
       ^
pirs_simulate.cpp:1717:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  info("Compile Date:   "__DATE__ " time: " __TIME__ "\n");
       ^
pirs_simulate.cpp:1717:25: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
  info("Compile Date:   "__DATE__ " time: " __TIME__ "\n");
                         ^~~~~~~~
pirs_simulate.cpp:1717:44: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
  info("Compile Date:   "__DATE__ " time: " __TIME__ "\n");
                                            ^~~~~~~~
pirs_simulate.cpp:1764:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  info("Bases in reference sequences:    %"PRIu64"\n",
       ^
pirs_simulate.cpp:1766:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  info("Read pairs simulated:            %"PRIu64"\n",
       ^
pirs_simulate.cpp:1768:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  info("Bases in reads:                  %"PRIu64"\n",
       ^
pirs_simulate.cpp:1773:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  info("Substitution error count:        %"PRIu64"\n",
       ^
pirs_simulate.cpp:1777:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  info("Insertion count:                 %"PRIu64"\n",
       ^
pirs_simulate.cpp:1779:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  info("Deletion count:                  %"PRIu64"\n",
       ^
pirs_simulate.cpp:1795:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
  info("Bases masked by EAMSS algorithm: %"PRIu64"\n", counters.masked_bases);
       ^
pirs_simulate.cpp:1856:8: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
   info("Note: A random seed (%"PRIu64") was specified on the command line.\n",
        ^
g++ -Wall -Wextra   -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -Wl,-z,relro -Wl,-z,now -o pirs InputStream.o OutputStream.o main.o util.o  mt19937-64.o pirs_diploid.o  BaseCallingProfile.o GCBiasProfile.o IndelProfile.o MaskQvalsByEamss.o Profile.o pirs_simulate.o -lz -lz 
make[4]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src/pirs'
make[4]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
make[4]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
make[3]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
make[2]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
cd src/stator/gcContCvgBias && make
make[2]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src/stator/gcContCvgBias'
g++ -c -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wfloat-equal  self_util.cpp self_util.h
g++ -c -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wfloat-equal  main.cpp
g++ -c -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wfloat-equal  stat_soap_coverage.h stat_soap_coverage.cpp
In file included from /usr/include/c++/7/vector:69:0,
                 from stat_soap_coverage.cpp:7:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
                 from stat_soap_coverage.cpp:2:
/usr/include/c++/7/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >}' changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = double; _Val = std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> >; _KeyOfValue = std::_Select1st<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >; _Compare = std::less<double>; _Alloc = std::allocator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> >, std::_Select1st<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >, std::less<double>, std::allocator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >}' changed in GCC 7.1
     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<double&&>, std::tuple<>}; _Key = double; _Val = std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> >; _KeyOfValue = std::_Select1st<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >; _Compare = std::less<double>; _Alloc = std::allocator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> >, std::_Select1st<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >, std::less<double>, std::allocator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >}' changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const double&>, std::tuple<>}; _Key = double; _Val = std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> >; _KeyOfValue = std::_Select1st<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >; _Compare = std::less<double>; _Alloc = std::allocator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> >, std::_Select1st<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >, std::less<double>, std::allocator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >}' changed in GCC 7.1
In file included from /usr/include/c++/7/map:61:0,
                 from stat_soap_coverage.cpp:2:
/usr/include/c++/7/bits/stl_map.h: In member function 'void stat_soap_coverage::StatGC()':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> >, std::_Select1st<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >, std::less<double>, std::allocator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> >, std::_Select1st<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >, std::less<double>, std::allocator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
In file included from /usr/include/c++/7/vector:69:0,
                 from stat_soap_coverage.cpp:7:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from stat_soap_coverage.cpp:7:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from stat_soap_coverage.cpp:7:
/usr/include/c++/7/bits/vector.tcc: In member function 'void stat_soap_coverage::StatCoverage()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
                 from stat_soap_coverage.cpp:5:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
     __insertion_sort(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
                 from /usr/include/c++/7/algorithm:62,
                 from stat_soap_coverage.cpp:5:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
     ^~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
                 from stat_soap_coverage.cpp:5:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
     __introsort_loop(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from stat_soap_coverage.cpp:7:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void stat_soap_coverage::statDepth()':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
                 from stat_soap_coverage.cpp:5:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
                 from stat_soap_coverage.cpp:2:
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> >, std::_Select1st<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >, std::less<double>, std::allocator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> >, std::_Select1st<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >, std::less<double>, std::allocator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
In file included from /usr/include/c++/7/algorithm:62:0,
                 from stat_soap_coverage.cpp:5:
/usr/include/c++/7/bits/stl_algo.h: In member function 'void stat_soap_coverage::DealStat()':
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from stat_soap_coverage.cpp:7:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from stat_soap_coverage.cpp:7:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
                 from stat_soap_coverage.cpp:5:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
g++ -o gc_coverage_bias -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wfloat-equal  self_util.o main.o stat_soap_coverage.o -Wl,-z,relro -Wl,-z,now -lgzstream -lz
make[2]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src/stator/gcContCvgBias'
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
   dh_auto_test -a -O--sourcedirectory=src
	make -j4 check VERBOSE=1
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
Making check in pirs
make[2]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src/pirs'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src/pirs'
make[2]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
make[2]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary-arch
dh binary-arch --sourcedirectory=src
   dh_testroot -a -O--sourcedirectory=src
   dh_prep -a -O--sourcedirectory=src
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_auto_install --sourcedirectory=src/stator/gcContCvgBias
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
   debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_install
mkdir -p debian/pirs/usr/lib/pirs
find src -name "*.pl" -exec cp -a \{\} debian/pirs/usr/lib/pirs \;
rm -f debian/pirs/usr/lib/pirs/autobam.pl
sed -i 's:#!/bin/env:#!/usr/bin/env:' debian/pirs/usr/lib/pirs/*.pl
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
   debian/rules override_dh_installdocs-arch
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_installdocs -a
cp -a src/stator/readme.txt debian/pirs/usr/share/doc/pirs/strator_readme.txt
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
   debian/rules override_dh_installchangelogs
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_installchangelogs NEWS
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
   dh_perl -a -O--sourcedirectory=src
   debian/rules override_dh_link-arch
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_link -a
for pl in debian/pirs/usr/lib/pirs/*.pl ; do \
    plname=`basename ${pl}` ; \
    ln -s ../lib/pirs/${plname} debian/pirs/usr/bin/`basename ${plname} .pl` ; \
done
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
   dh_strip_nondeterminism -a -O--sourcedirectory=src
   dh_compress -a -O--sourcedirectory=src
   dh_fixperms -a -O--sourcedirectory=src
   dh_missing -a -O--sourcedirectory=src
   dh_strip -a -O--sourcedirectory=src
   dh_makeshlibs -a -O--sourcedirectory=src
   dh_shlibdeps -a -O--sourcedirectory=src
dpkg-shlibdeps: warning: debian/pirs/usr/bin/gc_coverage_bias contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/pirs/usr/bin/pirs contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/pirs/usr/bin/pirs was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
   dh_installdeb -a -O--sourcedirectory=src
   dh_gencontrol -a -O--sourcedirectory=src
dpkg-gencontrol: warning: package pirs: unused substitution variable ${perl:Depends}
dpkg-gencontrol: warning: package pirs: unused substitution variable ${perl:Depends}
   dh_md5sums -a -O--sourcedirectory=src
   dh_builddeb -a -O--sourcedirectory=src
dpkg-deb: building package 'pirs' in '../pirs_2.0.2+dfsg-6_armhf.deb'.
dpkg-deb: building package 'pirs-dbgsym' in '../pirs-dbgsym_2.0.2+dfsg-6_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../pirs_2.0.2+dfsg-6_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build pirs-2.0.2+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-09-19T05:23:37Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


pirs_2.0.2+dfsg-6_armhf.changes:
--------------------------------

Format: 1.8
Date: Thu, 14 Sep 2017 10:44:45 +0200
Source: pirs
Binary: pirs pirs-profiles pirs-examples
Architecture: armhf
Version: 2.0.2+dfsg-6
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 pirs       - Profile based Illumina pair-end Reads Simulator
 pirs-examples - profile basd Illumina pair-end Reads Simulator (example data)
 pirs-profiles - profile basd Illumina pair-end Reads Simulator (profile data)
Closes: 861367 865655
Changes:
 pirs (2.0.2+dfsg-6) unstable; urgency=medium
 .
   * Do not disable PIE (thanks for the patch to Adrian Bunk <bunk@debian.org>)
     Closes: #865655
   * Standards-Version: 4.1.0 (no changes needed)
   * Depends: s/ttf-liberation/fonts-liberation/
     Closes: #861367
   * Drop autoreconf dependency which is useless with debhelper 10
   * d/rules: Do not parse d/changelog
   * Remove unused lintian override
Checksums-Sha1:
 562c2af7a6002b99ccc02b2fe9d9fdce6e850036 315532 pirs-dbgsym_2.0.2+dfsg-6_armhf.deb
 4f6028ff5f30e37a94817341ec89b53835180812 4489 pirs_2.0.2+dfsg-6_armhf.buildinfo
 b0328cbe9c2d07bf1197b6e43745b70cf541444c 98092 pirs_2.0.2+dfsg-6_armhf.deb
Checksums-Sha256:
 4e12a978f5063c30930322babb54202eb18d5174096552290620ac4b811ad4dd 315532 pirs-dbgsym_2.0.2+dfsg-6_armhf.deb
 9f54e5cdd908403aa17241f2c22a7bf4c29d3c4577449bfb41fd2fb144f3920c 4489 pirs_2.0.2+dfsg-6_armhf.buildinfo
 3f91d9c7b8a1f3ad93bedd5709a1d4a0e19f2d714b832e4823e7c31f2fa37677 98092 pirs_2.0.2+dfsg-6_armhf.deb
Files:
 949ffcfb1442e4af066172195da267f1 315532 debug optional pirs-dbgsym_2.0.2+dfsg-6_armhf.deb
 d87c3092d9aef51bdcccb196d61ecb5c 4489 science optional pirs_2.0.2+dfsg-6_armhf.buildinfo
 cc436b059cd3328b626be7d7da1b8f71 98092 science optional pirs_2.0.2+dfsg-6_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


pirs-dbgsym_2.0.2+dfsg-6_armhf.deb
----------------------------------

 new debian package, version 2.0.
 size 315532 bytes: control archive=515 bytes.
     409 bytes,    12 lines      control              
     212 bytes,     2 lines      md5sums              
 Package: pirs-dbgsym
 Source: pirs
 Version: 2.0.2+dfsg-6
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 363
 Depends: pirs (= 2.0.2+dfsg-6)
 Section: debug
 Priority: optional
 Description: debug symbols for pirs
 Build-Ids: 35f41a79b3f79a170d667e9af3f01ea35ae2f3e5 ccf6196fc452864f91676d1df66e6e982f804f3d

drwxr-xr-x root/root         0 2017-09-14 08:44 ./
drwxr-xr-x root/root         0 2017-09-14 08:44 ./usr/
drwxr-xr-x root/root         0 2017-09-14 08:44 ./usr/lib/
drwxr-xr-x root/root         0 2017-09-14 08:44 ./usr/lib/debug/
drwxr-xr-x root/root         0 2017-09-14 08:44 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2017-09-14 08:44 ./usr/lib/debug/.build-id/35/
-rw-r--r-- root/root     29336 2017-09-14 08:44 ./usr/lib/debug/.build-id/35/f41a79b3f79a170d667e9af3f01ea35ae2f3e5.debug
drwxr-xr-x root/root         0 2017-09-14 08:44 ./usr/lib/debug/.build-id/cc/
-rw-r--r-- root/root    330168 2017-09-14 08:44 ./usr/lib/debug/.build-id/cc/f6196fc452864f91676d1df66e6e982f804f3d.debug
drwxr-xr-x root/root         0 2017-09-14 08:44 ./usr/share/
drwxr-xr-x root/root         0 2017-09-14 08:44 ./usr/share/doc/
lrwxrwxrwx root/root         0 2017-09-14 08:44 ./usr/share/doc/pirs-dbgsym -> pirs


pirs_2.0.2+dfsg-6_armhf.deb
---------------------------

 new debian package, version 2.0.
 size 98092 bytes: control archive=1632 bytes.
    1379 bytes,    27 lines      control              
    1528 bytes,    23 lines      md5sums              
 Package: pirs
 Version: 2.0.2+dfsg-6
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 325
 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libgzstream0, libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.0.2), pirs-profiles, fonts-liberation, gnuplot
 Section: science
 Priority: optional
 Homepage: https://github.com/galaxy001/pirs
 Description: Profile based Illumina pair-end Reads Simulator
  The program pIRS can be used for simulating Illumina PE reads, with a
  series of characters generated by Illumina sequencing platform, such as
  insert size distribution, sequencing error(substitution, insertion,
  deletion), quality score and GC content-coverage bias.
  .
  The insert size follows a normal distribution, so users should set the
  mean value and standard deviation. Usually the standard deviation is set
  as 1/20 of the mean value. The normal distribution by Box-Muller method
  is simulated.
  .
  The program simulates sequencing error, quality score and GC content-
  coverage bias according to the empirical distribution profile. Some
  default profiles counted from lots of real sequencing data are provided.
  .
  To simulate reads from diploid genome, users should simulate the diploid
  genome sequence firstly by setting the ratio of heterozygosis SNP,
  heterozygosis InDel and structure variation.

drwxr-xr-x root/root         0 2017-09-14 08:44 ./
drwxr-xr-x root/root         0 2017-09-14 08:44 ./usr/
drwxr-xr-x root/root         0 2017-09-14 08:44 ./usr/bin/
lrwxrwxrwx root/root         0 2017-09-14 08:44 ./usr/bin/alignment_stator -> ../lib/pirs/alignment_stator.pl
lrwxrwxrwx root/root         0 2017-09-14 08:44 ./usr/bin/baseCalling_Matrix_analyzer -> ../lib/pirs/baseCalling_Matrix_analyzer.pl
lrwxrwxrwx root/root         0 2017-09-14 08:44 ./usr/bin/baseCalling_Matrix_calculator -> ../lib/pirs/baseCalling_Matrix_calculator.pl
lrwxrwxrwx root/root         0 2017-09-14 08:44 ./usr/bin/baseCalling_Matrix_calculator.0 -> ../lib/pirs/baseCalling_Matrix_calculator.0.pl
lrwxrwxrwx root/root         0 2017-09-14 08:44 ./usr/bin/baseCalling_Matrix_merger -> ../lib/pirs/baseCalling_Matrix_merger.pl
lrwxrwxrwx root/root         0 2017-09-14 08:44 ./usr/bin/baseCalling_Matrix_merger.old -> ../lib/pirs/baseCalling_Matrix_merger.old.pl
-rwxr-xr-x root/root     83604 2017-09-14 08:44 ./usr/bin/gc_coverage_bias
lrwxrwxrwx root/root         0 2017-09-14 08:44 ./usr/bin/gc_coverage_bias_plot -> ../lib/pirs/gc_coverage_bias_plot.pl
lrwxrwxrwx root/root         0 2017-09-14 08:44 ./usr/bin/gethist -> ../lib/pirs/gethist.pl
lrwxrwxrwx root/root         0 2017-09-14 08:44 ./usr/bin/ifollowQ -> ../lib/pirs/ifollowQ.pl
lrwxrwxrwx root/root         0 2017-09-14 08:44 ./usr/bin/ifollowQmerge -> ../lib/pirs/ifollowQmerge.pl
lrwxrwxrwx root/root         0 2017-09-14 08:44 ./usr/bin/ifollowQplot -> ../lib/pirs/ifollowQplot.pl
lrwxrwxrwx root/root         0 2017-09-14 08:44 ./usr/bin/ifqQ -> ../lib/pirs/ifqQ.pl
lrwxrwxrwx root/root         0 2017-09-14 08:44 ./usr/bin/indelstat_sam_bam -> ../lib/pirs/indelstat_sam_bam.pl
lrwxrwxrwx root/root         0 2017-09-14 08:44 ./usr/bin/itilestator -> ../lib/pirs/itilestator.pl
lrwxrwxrwx root/root         0 2017-09-14 08:44 ./usr/bin/loess -> ../lib/pirs/loess.pl
lrwxrwxrwx root/root         0 2017-09-14 08:44 ./usr/bin/pifollowQmerge -> ../lib/pirs/pifollowQmerge.pl
-rwxr-xr-x root/root     87600 2017-09-14 08:44 ./usr/bin/pirs
drwxr-xr-x root/root         0 2017-09-14 08:44 ./usr/lib/
drwxr-xr-x root/root         0 2017-09-14 08:44 ./usr/lib/pirs/
-rwxr-xr-x root/root     15718 2017-09-14 08:44 ./usr/lib/pirs/alignment_stator.pl
-rwxr-xr-x root/root     11248 2017-09-14 08:44 ./usr/lib/pirs/baseCalling_Matrix_analyzer.pl
-rwxr-xr-x root/root     20939 2017-09-14 08:44 ./usr/lib/pirs/baseCalling_Matrix_calculator.0.pl
-rwxr-xr-x root/root     19568 2017-09-14 08:44 ./usr/lib/pirs/baseCalling_Matrix_calculator.pl
-rwxr-xr-x root/root      5676 2017-09-14 08:44 ./usr/lib/pirs/baseCalling_Matrix_merger.old.pl
-rwxr-xr-x root/root      6284 2017-09-14 08:44 ./usr/lib/pirs/baseCalling_Matrix_merger.pl
-rwxr-xr-x root/root      3235 2017-09-14 08:44 ./usr/lib/pirs/gc_coverage_bias_plot.pl
-rwxr-xr-x root/root       362 2017-09-14 08:44 ./usr/lib/pirs/gethist.pl
-rwxr-xr-x root/root      4059 2017-09-14 08:44 ./usr/lib/pirs/ifollowQ.pl
-rwxr-xr-x root/root      3534 2017-09-14 08:44 ./usr/lib/pirs/ifollowQmerge.pl
-rwxr-xr-x root/root       617 2017-09-14 08:44 ./usr/lib/pirs/ifollowQplot.pl
-rw-r--r-- root/root      1824 2017-09-14 08:44 ./usr/lib/pirs/ifqQ.pl
-rwxr-xr-x root/root      7232 2017-09-14 08:44 ./usr/lib/pirs/indelstat_sam_bam.pl
-rwxr-xr-x root/root      2683 2017-09-14 08:44 ./usr/lib/pirs/itilestator.pl
-rw-r--r-- root/root      1460 2017-09-14 08:44 ./usr/lib/pirs/loess.pl
-rwxr-xr-x root/root      3084 2017-09-14 08:44 ./usr/lib/pirs/pifollowQmerge.pl
drwxr-xr-x root/root         0 2017-09-14 08:44 ./usr/share/
drwxr-xr-x root/root         0 2017-09-14 08:44 ./usr/share/doc/
drwxr-xr-x root/root         0 2017-09-14 08:44 ./usr/share/doc/pirs/
-rw-r--r-- root/root      7184 2016-08-14 05:10 ./usr/share/doc/pirs/README.gz
-rw-r--r-- root/root       832 2017-09-14 08:44 ./usr/share/doc/pirs/changelog.Debian.gz
-rw-r--r-- root/root      3446 2016-08-14 05:10 ./usr/share/doc/pirs/changelog.gz
-rw-r--r-- root/root      2931 2017-09-14 08:44 ./usr/share/doc/pirs/copyright
-rw-r--r-- root/root      1288 2016-08-14 05:10 ./usr/share/doc/pirs/strator_readme.txt


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 43164
Build-Time: 223
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 302
Job: pirs_2.0.2+dfsg-6
Machine Architecture: armhf
Package: pirs
Package-Time: 572
Source-Version: 2.0.2+dfsg-6
Space: 43164
Status: successful
Version: 2.0.2+dfsg-6
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Finished at 2017-09-19T05:23:37Z
Build needed 00:09:32, 43164k disc space