pirs →
2.0.2+dfsg-3 →
armhf → 2016-12-18 14:18:53
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| pirs 2.0.2+dfsg-3 (armhf) Sun, 18 Dec 2016 14:08:43 +0000 |
+==============================================================================+
Package: pirs
Version: 2.0.2+dfsg-3
Source Version: 2.0.2+dfsg-3
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-6476522a-dc1a-41ea-bb1b-8bdb31579fe2' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9603 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.5 MB]
Fetched 21.1 MB in 1min 1s (345 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'pirs' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/pirs.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/pirs.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 6037 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main pirs 2.0.2+dfsg-3 (dsc) [2149 B]
Get:2 http://172.17.0.1/private stretch-staging/main pirs 2.0.2+dfsg-3 (tar) [6029 kB]
Get:3 http://172.17.0.1/private stretch-staging/main pirs 2.0.2+dfsg-3 (diff) [5540 B]
Fetched 6037 kB in 0s (8268 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pirs-5Agcdt/pirs-2.0.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pirs-5Agcdt' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-2g0Zrx/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-2g0Zrx/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-2g0Zrx/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-2g0Zrx/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-2g0Zrx/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-2g0Zrx/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-2g0Zrx/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-2g0Zrx/apt_archive ./ Packages [431 B]
Fetched 2107 B in 6s (322 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
fuse2fs gnupg-l10n libfuse2 manpages
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 25 not upgraded.
Need to get 776 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-2g0Zrx/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [776 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 776 B in 0s (6648 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13928 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), dh-autoreconf, libboost-dev, zlib1g-dev, libgzstream-dev
Filtered Build-Depends: debhelper (>= 10), dh-autoreconf, libboost-dev, zlib1g-dev, libgzstream-dev
dpkg-deb: building package 'sbuild-build-depends-pirs-dummy' in '/<<BUILDDIR>>/resolver-2g0Zrx/apt_archive/sbuild-build-depends-pirs-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-pirs-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-2g0Zrx/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-2g0Zrx/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-2g0Zrx/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-2g0Zrx/apt_archive ./ Sources [522 B]
Get:5 copy:/<<BUILDDIR>>/resolver-2g0Zrx/apt_archive ./ Packages [601 B]
Fetched 2456 B in 1s (2339 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install pirs build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
fuse2fs gnupg-l10n libfuse2 manpages
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libboost-dev libboost1.62-dev libbsd0
libcroco3 libffi6 libfile-stripnondeterminism-perl libglib2.0-0
libgzstream-dev libgzstream0 libicu57 libmagic-mgc libmagic1 libpipeline1
libsigsegv2 libtool libunistring0 libxml2 m4 man-db po-debconf zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libboost-doc libboost1.62-doc libboost-atomic1.62-dev
libboost-chrono1.62-dev libboost-context1.62-dev libboost-coroutine1.62-dev
libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev
libboost-filesystem1.62-dev libboost-graph1.62-dev
libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev
libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev
libboost-mpi1.62-dev libboost-mpi-python1.62-dev
libboost-program-options1.62-dev libboost-python1.62-dev
libboost-random1.62-dev libboost-regex1.62-dev
libboost-serialization1.62-dev libboost-signals1.62-dev
libboost-system1.62-dev libboost-test1.62-dev libboost-thread1.62-dev
libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev
libboost1.62-tools-dev libmpfrc++-dev libntl-dev libtool-doc gfortran
| fortran95-compiler gcj-jdk less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
libltdl-dev xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libboost-dev libboost1.62-dev libbsd0
libcroco3 libffi6 libfile-stripnondeterminism-perl libglib2.0-0
libgzstream-dev libgzstream0 libicu57 libmagic-mgc libmagic1 libpipeline1
libsigsegv2 libtool libunistring0 libxml2 m4 man-db po-debconf
sbuild-build-depends-pirs-dummy zlib1g-dev
0 upgraded, 36 newly installed, 0 to remove and 25 not upgraded.
Need to get 26.3 MB/26.3 MB of archives.
After this operation, 182 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-2g0Zrx/apt_archive ./ sbuild-build-depends-pirs-dummy 0.invalid.0 [806 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-8 [1087 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.12 [178 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-2 [971 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libmagic-mgc armhf 1:5.29-1 [219 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.29-1 [104 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.29-1 [63.3 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libicu57 armhf 57.1-5 [7427 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.4+dfsg1-2.1 [804 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-5 [733 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.028-1 [14.6 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.028-1 [9020 B]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.50.2-2 [2527 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-2 [131 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf debhelper all 10.2.2 [826 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libboost1.62-dev armhf 1.62.0+dfsg-4 [7009 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libboost-dev armhf 1.62.0.1 [3632 B]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libgzstream0 armhf 1.5+dfsg-2 [5764 B]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libgzstream-dev armhf 1.5+dfsg-2 [6172 B]
Get:35 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 26.3 MB in 4s (5379 kB/s)
Selecting previously unselected package groff-base.
(Reading database ... 13928 files and directories currently installed.)
Preparing to unpack .../00-groff-base_1.22.3-8_armhf.deb ...
Unpacking groff-base (1.22.3-8) ...
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Preparing to unpack .../01-libbsd0_0.8.3-1_armhf.deb ...
Unpacking libbsd0:armhf (0.8.3-1) ...
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Preparing to unpack .../02-bsdmainutils_9.0.12_armhf.deb ...
Unpacking bsdmainutils (9.0.12) ...
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Preparing to unpack .../03-libpipeline1_1.4.1-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.1-2) ...
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Preparing to unpack .../04-man-db_2.7.5-2_armhf.deb ...
Unpacking man-db (2.7.5-2) ...
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Preparing to unpack .../05-libmagic-mgc_1%3a5.29-1_armhf.deb ...
Unpacking libmagic-mgc (1:5.29-1) ...
Selecting previously unselected package libmagic1:armhf.
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Unpacking libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Selecting previously unselected package gettext.
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Unpacking gettext (0.19.8.1-1) ...
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Unpacking debhelper (10.2.2) ...
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Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Selecting previously unselected package sbuild-build-depends-pirs-dummy.
Preparing to unpack .../35-sbuild-build-depends-pirs-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-pirs-dummy (0.invalid.0) ...
Setting up libarchive-zip-perl (1.59-1) ...
Setting up libgzstream0 (1.5+dfsg-2) ...
Setting up libboost1.62-dev:armhf (1.62.0+dfsg-4) ...
Setting up libgzstream-dev (1.5+dfsg-2) ...
Setting up libsigsegv2:armhf (2.10-5) ...
Setting up groff-base (1.22.3-8) ...
Setting up gettext-base (0.19.8.1-1) ...
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up m4 (1.4.17-5) ...
Setting up libicu57:armhf (57.1-5) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-2.1) ...
Setting up libmagic-mgc (1:5.29-1) ...
Setting up libmagic1:armhf (1:5.29-1) ...
Processing triggers for libc-bin (2.24-7+rpi1) ...
Setting up autotools-dev (20161112.1) ...
Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Setting up libffi6:armhf (3.2.1-6) ...
Setting up libboost-dev:armhf (1.62.0.1) ...
Setting up bsdmainutils (9.0.12) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up autopoint (0.19.8.1-1) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Setting up libfile-stripnondeterminism-perl (0.028-1) ...
Setting up libglib2.0-0:armhf (2.50.2-2) ...
No schema files found: doing nothing.
Setting up autoconf (2.69-10) ...
Setting up file (1:5.29-1) ...
Setting up libcroco3:armhf (0.6.11-2) ...
Setting up automake (1:1.15-5) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.7.5-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libtool (2.4.6-2) ...
Setting up gettext (0.19.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.20) ...
Setting up dh-autoreconf (12) ...
Setting up dh-strip-nondeterminism (0.028-1) ...
Setting up debhelper (10.2.2) ...
Setting up sbuild-build-depends-pirs-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-7+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.27.51.20161127-1 dpkg-dev_1.18.15 g++-6_6.2.1-5+rpi1 gcc-6_6.2.1-5+rpi1 libc6-dev_2.24-7+rpi1 libstdc++-4.9-dev_4.9.3-14 libstdc++-6-dev_6.2.1-5+rpi1 libstdc++6_6.2.1-5+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: acl_2.2.52-3 adduser_3.115 apt_1.4~beta1 autoconf_2.69-10 automake_1:1.15-5 autopoint_0.19.8.1-1 autotools-dev_20161112.1 base-files_9.7+rpi1 base-passwd_3.5.41 bash_4.4-2 binutils_2.27.51.20161127-1 bsdmainutils_9.0.12 bsdutils_1:2.29-1 build-essential_12.2 bzip2_1.0.6-8 coreutils_8.25-2 cpio_2.11+dfsg-6 cpp_4:6.1.1-1 cpp-6_6.2.1-5+rpi1 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2.1 debhelper_10.2.2 debianutils_4.8.1 dh-autoreconf_12 dh-strip-nondeterminism_0.028-1 diffutils_1:3.5-1 dmsetup_2:1.02.136-1 dpkg_1.18.15 dpkg-dev_1.18.15 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-2 file_1:5.29-1 findutils_4.6.0+git+20161106-1 fuse2fs_1.43.3-1 g++_4:6.1.1-1 g++-6_6.2.1-5+rpi1 gcc_4:6.1.1-1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-6_6.2.1-5+rpi1 gcc-6-base_6.2.1-5+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gnupg_2.1.16-2 gnupg-agent_2.1.16-2 gnupg-l10n_2.1.16-2 gpgv_2.1.16-2 grep_2.26-1 groff-base_1.22.3-8 gzip_1.6-5 hostname_3.18 init_1.46 init-system-helpers_1.46 initscripts_2.88dsf-59.8 insserv_1.14.0-5.4 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_23-1 libacl1_2.2.52-3 libapparmor1_2.10.95-6 libapt-pkg4.12_1.0.9.10 libapt-pkg5.0_1.4~beta1 libarchive-zip-perl_1.59-1 libasan1_4.9.3-14 libasan3_6.2.1-5+rpi1 libassuan0_2.4.3-2 libatomic1_6.2.1-5+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.7-1 libaudit1_1:2.6.7-1 libblkid1_2.29-1 libboost-dev_1.62.0.1 libboost1.62-dev_1.62.0+dfsg-4 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.24-7+rpi1 libc-dev-bin_2.24-7+rpi1 libc6_2.24-7+rpi1 libc6-dev_2.24-7+rpi1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.2.1-5+rpi1 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.3-2 libdb5.3_5.3.28-12 libdbus-1-3_1.10.14-1 libdebconfclient0_0.218 libdevmapper1.02.1_2:1.02.136-1 libdpkg-perl_1.18.15 libdrm2_2.4.74-1 libfakeroot_1.21-2 libfdisk1_2.29-1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.028-1 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-4.9-dev_4.9.3-14 libgcc-6-dev_6.2.1-5+rpi1 libgcc1_1:6.2.1-5+rpi1 libgcrypt20_1.7.3-2 libgdbm3_1.8.3-14 libglib2.0-0_2.50.2-2 libgmp10_2:6.1.1+dfsg-1 libgomp1_6.2.1-5+rpi1 libgpg-error0_1.25-1 libgzstream-dev_1.5+dfsg-2 libgzstream0_1.5+dfsg-2 libicu57_57.1-5 libidn11_1.33-1 libip4tc0_1.6.0-4 libisl15_0.17.1-1 libklibc_2.0.4-9+rpi1 libkmod2_23-1 libksba8_1.3.5-2 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.29-1 libmagic1_1:5.29-1 libmount1_2.29-1 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160917-1 libncursesw5_6.0+20160917-1 libnpth0_1.3-1 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpcre3_2:8.39-2 libperl5.24_5.24.1~rc4-1 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6 libprocps3_2:3.3.9-9 libprocps6_2:3.3.12-3 libreadline7_7.0-1 libseccomp2_2.3.1-2.1 libselinux1_2.6-3 libsemanage-common_2.6-1 libsemanage1_2.6-1 libsepol1_2.6-1 libsigsegv2_2.10-5 libslang2_2.3.1-5 libsmartcols1_2.29-1 libsqlite3-0_3.15.2-1 libss2_1.43.3-1 libstdc++-4.9-dev_4.9.3-14 libstdc++-6-dev_6.2.1-5+rpi1 libstdc++6_6.2.1-5+rpi1 libsystemd0_232-6 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160917-1 libtool_2.4.6-2 libubsan0_6.2.1-5+rpi1 libudev1_232-6 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1 libxml2_2.9.4+dfsg1-2.1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.3 lsb-base_9.20161125+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-2 manpages_4.08-1 mawk_1.3.3-17 mount_2.29-1 multiarch-support_2.24-7+rpi1 nano_2.7.1-1 ncurses-base_6.0+20160917-1 ncurses-bin_6.0+20160917-1 passwd_1:4.2-3.3 patch_2.7.5-1 perl_5.24.1~rc4-1 perl-base_5.24.1~rc4-1 perl-modules-5.24_5.24.1~rc4-1 pinentry-curses_0.9.7-9 po-debconf_1.0.20 procps_2:3.3.12-3 raspbian-archive-keyring_20120528.2 readline-common_7.0-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pirs-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 startpar_0.59-3.1 systemd_232-6 systemd-sysv_232-6 sysv-rc_2.88dsf-59.8 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1.1 tzdata_2016j-2 udev_232-6 util-linux_2.29-1 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Dec 7 12:02:50 2016 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./pirs_2.0.2+dfsg-3.dsc
dpkg-source: info: extracting pirs in /<<BUILDDIR>>/pirs-2.0.2+dfsg
dpkg-source: info: unpacking pirs_2.0.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking pirs_2.0.2+dfsg-3.debian.tar.xz
dpkg-source: info: applying use_debian_packaged_libgzstream.patch
dpkg-source: info: applying Fix-spelling-of-sse2-option.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-6476522a-dc1a-41ea-bb1b-8bdb31579fe2
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package pirs
dpkg-buildpackage: info: source version 2.0.2+dfsg-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build pirs-2.0.2+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with autoreconf --sourcedirectory=src
dh_testdir -O--sourcedirectory=src
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_auto_clean
cd src && ./srclean.sh >/dev/null 2>/dev/null || true
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_autoreconf_clean -O--sourcedirectory=src
dh_clean -O--sourcedirectory=src
debian/rules build-arch
dh build-arch --with autoreconf --sourcedirectory=src
dh_testdir -a -O--sourcedirectory=src
dh_update_autotools_config -a -O--sourcedirectory=src
debian/rules override_dh_autoreconf
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
#cd src && ./genauto.sh
cd src && \
mv INSTALL INSTALL.save && \
autoreconf --install && \
mv INSTALL.save INSTALL && \
cd /<<BUILDDIR>>/pirs-2.0.2+dfsg
configure.ac:9: installing './compile'
configure.ac:3: installing './install-sh'
configure.ac:3: installing './missing'
Makefile.am: installing './INSTALL'
pirs/Makefile.am:28: warning: source file 'SFMT-src-1.4/SFMT.c' is in a subdirectory,
pirs/Makefile.am:28: but option 'subdir-objects' is disabled
automake: warning: possible forward-incompatibility.
automake: At least a source file is in a subdirectory, but the 'subdir-objects'
automake: automake option hasn't been enabled. For now, the corresponding output
automake: object file(s) will be placed in the top-level directory. However,
automake: this behaviour will change in future Automake versions: they will
automake: unconditionally cause object files to be placed in the same subdirectory
automake: of the corresponding sources.
automake: You are advised to start using 'subdir-objects' option throughout your
automake: project, to avoid future incompatibilities.
pirs/Makefile.am: installing './depcomp'
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_auto_configure -- --enable-pirs-diploid --disable-sse2
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --enable-pirs-diploid --disable-sse2
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... none
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for gzopen in -lz... yes
checking Whether to include support for 'pirs diploid' command... yes
checking Whether to include support for 'pirs simulate' command... yes
checking Whether to include support for multiple threads... yes
checking for g++ option to support OpenMP... -fopenmp
checking Whether to include support for SSE2 instructions... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating pirs/Makefile
config.status: creating config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_auto_build
make -j4
make[2]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
(CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/bash /<<BUILDDIR>>/pirs-2.0.2+dfsg/src/missing autoheader)
rm -f stamp-h1
touch config.h.in
cd . && /bin/bash ./config.status config.h
config.status: creating config.h
config.status: config.h is unchanged
make all-recursive
make[3]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
Making all in pirs
make[4]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src/pirs'
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o InputStream.o InputStream.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o OutputStream.o OutputStream.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o main.o main.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o util.o util.cpp
main.cpp:18:19: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
"Compile Date: " __DATE__ " time: " __TIME__ "\n"
^~~~~~~~
main.cpp:18:38: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
"Compile Date: " __DATE__ " time: " __TIME__ "\n"
^~~~~~~~
util.cpp: In function 'void* xmalloc(size_t)':
util.cpp:192:65: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t {aka unsigned int}' [-Wformat=]
fatal_error("Out of memory: tried to allocate %lu bytes", size);
^
util.cpp: In function 'void* xrealloc(void*, size_t)':
util.cpp:200:67: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t {aka unsigned int}' [-Wformat=]
fatal_error("Out of memory: tried to reallocate %lu bytes", size);
^
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o mt19937-64.o mt19937-64.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o pirs_diploid.o pirs_diploid.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o BaseCallingProfile.o BaseCallingProfile.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o GCBiasProfile.o GCBiasProfile.cpp
pirs_diploid.cpp:639:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info(" [%#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
^
pirs_diploid.cpp:639:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info(" [%#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
^
pirs_diploid.cpp:639:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info(" [%#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
^
pirs_diploid.cpp:641:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info(" %#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
^
pirs_diploid.cpp:641:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info(" %#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
^
pirs_diploid.cpp:641:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info(" %#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
^
pirs_diploid.cpp:643:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info(" %#"PRIx64"]\n", het_type_tab[6]);
^
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o IndelProfile.o IndelProfile.cpp
pirs_diploid.cpp: In function 'bool try_indel(const double*, const size_t*, const std::vector<char>&, size_t&, std::vector<char>&, bool, const char*, Counter&)':
pirs_diploid.cpp:438:20: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'uint64_t {aka long long unsigned int}' [-Wformat=]
indel_len);
^
pirs_diploid.cpp:438:20: warning: format '%zu' expects argument of type 'size_t', but argument 5 has type 'uint64_t {aka long long unsigned int}' [-Wformat=]
IndelProfile.cpp: In function 'void load_indel_info_line(char*, Profile&)':
IndelProfile.cpp:117:50: warning: format '%lu' expects argument of type 'long unsigned int*', but argument 3 has type 'uint64_t* {aka long long unsigned int*}' [-Wformat=]
} else if (sscanf(line, "Read_1_Count = %lu", &n) == 1)
^
IndelProfile.cpp:119:48: warning: format '%lu' expects argument of type 'long unsigned int*', but argument 3 has type 'uint64_t* {aka long long unsigned int*}' [-Wformat=]
else if (sscanf(line, "Read_2_Count = %lu", &n) == 1)
^
IndelProfile.cpp: In constructor 'IndelProfile::IndelProfile(const SimulationParameters&)':
IndelProfile.cpp:165:48: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'uint64_t {aka long long unsigned int}' [-Wformat=]
info(" read_1_count = %lu\n", read_1_count);
^
IndelProfile.cpp:166:48: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'uint64_t {aka long long unsigned int}' [-Wformat=]
info(" read_2_count = %lu\n", read_2_count);
^
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o MaskQvalsByEamss.o MaskQvalsByEamss.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o Profile.o Profile.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o pirs_simulate.o pirs_simulate.cpp
pirs_simulate.cpp:168:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
" "DEFAULT_BASE_CALLING_PROFILE"\n"
^
pirs_simulate.cpp:174:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
" "DEFAULT_INDEL_PROFILE"\n"
^
pirs_simulate.cpp:180:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
" "DEFAULT_GC_BIAS_PROFILE_100",\n"
^
pirs_simulate.cpp:181:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
" "DEFAULT_GC_BIAS_PROFILE_150",\n"
^
pirs_simulate.cpp:182:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
" "DEFAULT_GC_BIAS_PROFILE_200",\n"
^
pirs_simulate.cpp:672:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
out_file.printf("%cread_%d_%"PRIu64"/%d\n",
^
pirs_simulate.cpp:700:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info_log_file.printf("read_%d_%"PRIu64"/%d\t%s\t%s\t%zu\t%c\t%d\t%d\t",
^
pirs_simulate.cpp:1235:10: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info("Simulated %"PRIu64" of %"PRIu64" read pairs\n",
^
pirs_simulate.cpp:1235:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info("Simulated %"PRIu64" of %"PRIu64" read pairs\n",
^
pirs_simulate.cpp:1540:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
insert_log.printf("%d\t%"PRIu64"\n", it->first, it->second);
^
pirs_simulate.cpp:1557:2: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
"# The total number of read pairs that were simulated was %"PRIu64".\n"
^
pirs_simulate.cpp:1574:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
error_log.printf("%d\t%"PRIu64"\t%g\n",
^
pirs_simulate.cpp:1579:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
error_log.printf("total\t%"PRIu64"\t%g\n",
^
pirs_simulate.cpp:1685:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
log_parameter(info_log, "Random seed: %"PRIu64"\n",
^
pirs_simulate.cpp:1713:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info("Program: "PROGRAM "\n");
^
pirs_simulate.cpp:1714:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info("Version: "VERSION "\n");
^
pirs_simulate.cpp:1715:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info("Author: "AUTHOR "\n");
^
pirs_simulate.cpp:1716:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info("Contact: "CONTACT "\n");
^
pirs_simulate.cpp:1717:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info("Compile Date: "__DATE__ " time: " __TIME__ "\n");
^
pirs_simulate.cpp:1717:25: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
info("Compile Date: "__DATE__ " time: " __TIME__ "\n");
^~~~~~~~
pirs_simulate.cpp:1717:44: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
info("Compile Date: "__DATE__ " time: " __TIME__ "\n");
^~~~~~~~
pirs_simulate.cpp:1764:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info("Bases in reference sequences: %"PRIu64"\n",
^
pirs_simulate.cpp:1766:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info("Read pairs simulated: %"PRIu64"\n",
^
pirs_simulate.cpp:1768:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info("Bases in reads: %"PRIu64"\n",
^
pirs_simulate.cpp:1773:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info("Substitution error count: %"PRIu64"\n",
^
pirs_simulate.cpp:1777:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info("Insertion count: %"PRIu64"\n",
^
pirs_simulate.cpp:1779:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info("Deletion count: %"PRIu64"\n",
^
pirs_simulate.cpp:1795:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info("Bases masked by EAMSS algorithm: %"PRIu64"\n", counters.masked_bases);
^
pirs_simulate.cpp:1856:8: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
info("Note: A random seed (%"PRIu64") was specified on the command line.\n",
^
g++ -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -o pirs InputStream.o OutputStream.o main.o util.o mt19937-64.o pirs_diploid.o BaseCallingProfile.o GCBiasProfile.o IndelProfile.o MaskQvalsByEamss.o Profile.o pirs_simulate.o -lz -lz
make[4]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src/pirs'
make[4]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
make[4]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
make[3]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
make[2]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
cd src/stator/gcContCvgBias && make
make[2]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src/stator/gcContCvgBias'
g++ -c -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -mtune=generic -pedantic -Wfloat-equal self_util.cpp self_util.h
g++: error: unrecognized argument in option '-mtune=generic'
g++: note: valid arguments to '-mtune=' are: arm1020e arm1020t arm1022e arm1026ej-s arm10e arm10tdmi arm1136j-s arm1136jf-s arm1156t2-s arm1156t2f-s arm1176jz-s arm1176jzf-s arm2 arm250 arm3 arm6 arm60 arm600 arm610 arm620 arm7 arm70 arm700 arm700i arm710 arm7100 arm710c arm710t arm720 arm720t arm740t arm7500 arm7500fe arm7d arm7di arm7dm arm7dmi arm7m arm7tdmi arm7tdmi-s arm8 arm810 arm9 arm920 arm920t arm922t arm926ej-s arm940t arm946e-s arm966e-s arm968e-s arm9e arm9tdmi cortex-a12 cortex-a15 cortex-a15.cortex-a7 cortex-a17 cortex-a17.cortex-a7 cortex-a32 cortex-a35 cortex-a5 cortex-a53 cortex-a57 cortex-a57.cortex-a53 cortex-a7 cortex-a72 cortex-a72.cortex-a53 cortex-a8 cortex-a9 cortex-m0 cortex-m0.small-multiply cortex-m0plus cortex-m0plus.small-multiply cortex-m1 cortex-m1.small-multiply cortex-m3 cortex-m4 cortex-m7 cortex-r4 cortex-r4f cortex-r5 cortex-r7 cortex-r8 ep9312 exynos-m1 fa526 fa606te fa626 fa626te fa726te fmp626 generic-armv7-a iwmmxt iwmmxt2 marvell-pj4 mpcore mpcorenovfp native qdf24xx strongarm strongarm110 strongarm1100 strongarm1110 xgene1 xscale
Makefile:27: recipe for target 'self_util.o' failed
make[2]: *** [self_util.o] Error 1
make[2]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src/stator/gcContCvgBias'
debian/rules:36: recipe for target 'override_dh_auto_build' failed
make[1]: *** [override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
debian/rules:17: recipe for target 'build-arch' failed
make: *** [build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2
--------------------------------------------------------------------------------
Build finished at 2016-12-18T14:18:25Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 0
Build-Time: 72
Distribution: stretch-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 352
Job: pirs_2.0.2+dfsg-3
Machine Architecture: armhf
Package: pirs
Package-Time: 582
Source-Version: 2.0.2+dfsg-3
Space: 0
Status: failed
Version: 2.0.2+dfsg-3
--------------------------------------------------------------------------------
Finished at 2016-12-18T14:18:25Z
Build needed 00:00:00, 0k disc space