pirs →
2.0.2+dfsg-10 →
armhf → 2021-09-06 05:45:38
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard
+==============================================================================+
| pirs 2.0.2+dfsg-10 (armhf) Mon, 06 Sep 2021 05:35:29 +0000 |
+==============================================================================+
Package: pirs
Version: 2.0.2+dfsg-10
Source Version: 2.0.2+dfsg-10
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-e3a90b0c-d5f5-41ca-bd06-4f6fb037f531' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.3 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.7 MB in 29s (888 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'pirs' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/pirs.git
Please use:
git clone https://salsa.debian.org/med-team/pirs.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 6039 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main pirs 2.0.2+dfsg-10 (dsc) [2123 B]
Get:2 http://172.17.0.1/private bookworm-staging/main pirs 2.0.2+dfsg-10 (tar) [6029 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main pirs 2.0.2+dfsg-10 (diff) [7272 B]
Fetched 6039 kB in 2s (2999 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pirs-gMvOoa/pirs-2.0.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pirs-gMvOoa' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-U1IVwj/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-U1IVwj/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-U1IVwj/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-U1IVwj/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-U1IVwj/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-U1IVwj/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-U1IVwj/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-U1IVwj/apt_archive ./ Packages [430 B]
Fetched 2106 B in 1s (2931 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 64 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-U1IVwj/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (22.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12488 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libboost-dev, zlib1g-dev, libgzstream-dev
Filtered Build-Depends: debhelper-compat (= 13), libboost-dev, zlib1g-dev, libgzstream-dev
dpkg-deb: building package 'sbuild-build-depends-pirs-dummy' in '/<<BUILDDIR>>/resolver-U1IVwj/apt_archive/sbuild-build-depends-pirs-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-pirs-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-U1IVwj/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-U1IVwj/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-U1IVwj/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-U1IVwj/apt_archive ./ Sources [511 B]
Get:5 copy:/<<BUILDDIR>>/resolver-U1IVwj/apt_archive ./ Packages [592 B]
Fetched 2436 B in 1s (3067 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install pirs build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libboost-dev libboost1.74-dev
libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libgzstream-dev
libgzstream0 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2
libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf
sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libboost-doc libboost1.74-doc
libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev
libboost-context1.74-dev libboost-contract1.74-dev
libboost-coroutine1.74-dev libboost-date-time1.74-dev
libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev
libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
libboost-program-options1.74-dev libboost-python1.74-dev
libboost-random1.74-dev libboost-regex1.74-dev
libboost-serialization1.74-dev libboost-stacktrace1.74-dev
libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libboost-dev libboost1.74-dev
libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libgzstream-dev
libgzstream0 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2
libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf
sbuild-build-depends-pirs-dummy sensible-utils zlib1g-dev
0 upgraded, 37 newly installed, 0 to remove and 64 not upgraded.
Need to get 27.2 MB of archives.
After this operation, 207 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-U1IVwj/apt_archive ./ sbuild-build-depends-pirs-dummy 0.invalid.0 [884 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-1 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-6 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.69-14 [313 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.3-2 [814 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.1 [192 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [580 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.1 [1056 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-9 [9534 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf libboost-dev armhf 1.74.0.3+b1 [4820 B]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf libgzstream0 armhf 1.5+dfsg-5 [6268 B]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf libgzstream-dev armhf 1.5+dfsg-5 [6728 B]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 27.2 MB in 9s (3043 kB/s)
Selecting previously unselected package bsdextrautils.
(Reading database ... 12488 files and directories currently installed.)
Preparing to unpack .../00-bsdextrautils_2.37.2-1_armhf.deb ...
Unpacking bsdextrautils (2.37.2-1) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../01-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../02-groff-base_1.22.4-6_armhf.deb ...
Unpacking groff-base (1.22.4-6) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../03-libpipeline1_1.5.3-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.3-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../04-man-db_2.9.4-2_armhf.deb ...
Unpacking man-db (2.9.4-2) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../05-sensible-utils_0.0.17_all.deb ...
Unpacking sensible-utils (0.0.17) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_armhf.deb ...
Unpacking libmagic-mgc (1:5.39-3) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../07-libmagic1_1%3a5.39-3_armhf.deb ...
Unpacking libmagic1:armhf (1:5.39-3) ...
Selecting previously unselected package file.
Preparing to unpack .../08-file_1%3a5.39-3_armhf.deb ...
Unpacking file (1:5.39-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../09-gettext-base_0.21-4_armhf.deb ...
Unpacking gettext-base (0.21-4) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../10-libsigsegv2_2.13-1_armhf.deb ...
Unpacking libsigsegv2:armhf (2.13-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../11-m4_1.4.18-5_armhf.deb ...
Unpacking m4 (1.4.18-5) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../12-autoconf_2.69-14_all.deb ...
Unpacking autoconf (2.69-14) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ...
Unpacking autotools-dev (20180224.1+nmu1) ...
Selecting previously unselected package automake.
Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ...
Unpacking automake (1:1.16.3-2) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../15-autopoint_0.21-4_all.deb ...
Unpacking autopoint (0.21-4) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../16-libdebhelper-perl_13.5.1_all.deb ...
Unpacking libdebhelper-perl (13.5.1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../17-libtool_2.4.6-15_all.deb ...
Unpacking libtool (2.4.6-15) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../18-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../20-libsub-override-perl_0.09-2_all.deb ...
Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../22-dh-strip-nondeterminism_1.12.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.12.0-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../23-libelf1_0.185-2_armhf.deb ...
Unpacking libelf1:armhf (0.185-2) ...
Selecting previously unselected package dwz.
Preparing to unpack .../24-dwz_0.14-1_armhf.deb ...
Unpacking dwz (0.14-1) ...
Selecting previously unselected package libicu67:armhf.
Preparing to unpack .../25-libicu67_67.1-7_armhf.deb ...
Unpacking libicu67:armhf (67.1-7) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.7_armhf.deb ...
Unpacking libxml2:armhf (2.9.10+dfsg-6.7) ...
Selecting previously unselected package gettext.
Preparing to unpack .../27-gettext_0.21-4_armhf.deb ...
Unpacking gettext (0.21-4) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../28-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../30-debhelper_13.5.1_all.deb ...
Unpacking debhelper (13.5.1) ...
Selecting previously unselected package libboost1.74-dev:armhf.
Preparing to unpack .../31-libboost1.74-dev_1.74.0-9_armhf.deb ...
Unpacking libboost1.74-dev:armhf (1.74.0-9) ...
Selecting previously unselected package libboost-dev:armhf.
Preparing to unpack .../32-libboost-dev_1.74.0.3+b1_armhf.deb ...
Unpacking libboost-dev:armhf (1.74.0.3+b1) ...
Selecting previously unselected package libgzstream0.
Preparing to unpack .../33-libgzstream0_1.5+dfsg-5_armhf.deb ...
Unpacking libgzstream0 (1.5+dfsg-5) ...
Selecting previously unselected package libgzstream-dev.
Preparing to unpack .../34-libgzstream-dev_1.5+dfsg-5_armhf.deb ...
Unpacking libgzstream-dev (1.5+dfsg-5) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../35-zlib1g-dev_1%3a1.2.11.dfsg-2_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Selecting previously unselected package sbuild-build-depends-pirs-dummy.
Preparing to unpack .../36-sbuild-build-depends-pirs-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-pirs-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up libboost1.74-dev:armhf (1.74.0-9) ...
Setting up bsdextrautils (2.37.2-1) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libicu67:armhf (67.1-7) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.5.1) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.39-3) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up autopoint (0.21-4) ...
Setting up libgzstream0 (1.5+dfsg-5) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up sensible-utils (0.0.17) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libboost-dev:armhf (1.74.0.3+b1) ...
Setting up libelf1:armhf (0.185-2) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.7) ...
Setting up libfile-stripnondeterminism-perl (1.12.0-1) ...
Setting up gettext (0.21-4) ...
Setting up libtool (2.4.6-15) ...
Setting up m4 (1.4.18-5) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libgzstream-dev (1.5+dfsg-5) ...
Setting up autoconf (2.69-14) ...
Setting up dh-strip-nondeterminism (1.12.0-1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-6) ...
Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up debhelper (13.5.1) ...
Setting up sbuild-build-depends-pirs-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-13+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35.2-2+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.2.1-6+rpi1 gcc-10_10.2.1-6+rpi1 libc6-dev_2.31-13+rpi1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.2.4 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1+rpi1 base-passwd_3.5.51 bash_5.1-2 binutils_2.35.2-2+rpi1 binutils-arm-linux-gnueabihf_2.35.2-2+rpi1 binutils-common_2.35.2-2+rpi1 bsdextrautils_2.37.2-1 bsdutils_1:2.36.1-8 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.2.1-6+rpi1 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.77 debhelper_13.5.1 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.2-2 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.2.1-6+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.2.1-6+rpi1 gcc-10-base_10.2.1-6+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.3.0-22+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libapt-pkg6.0_2.2.4 libarchive-zip-perl_1.68-1 libasan6_10.2.1-6+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-6+rpi1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libbinutils_2.35.2-2+rpi1 libblkid1_2.36.1-8 libboost-dev_1.74.0.3+b1 libboost1.74-dev_1.74.0-9 libbz2-1.0_1.0.8-4 libc-bin_2.31-13+rpi1 libc-dev-bin_2.31-13+rpi1 libc6_2.31-13+rpi1 libc6-dev_2.31-13+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-6+rpi1 libcom-err2_1.46.2-2 libcrypt-dev_1:4.4.18-4 libcrypt1_1:4.4.18-4 libctf-nobfd0_2.35.2-2+rpi1 libctf0_2.35.2-2+rpi1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.1 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libext2fs2_1.46.2-2 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-10-dev_10.2.1-6+rpi1 libgcc-s1_10.2.1-6+rpi1 libgcrypt20_1.8.7-6 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.1-5 libgomp1_10.2.1-6+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-6 libgzstream-dev_1.5+dfsg-5 libgzstream0_1.5+dfsg-5 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.0-5 libisl23_0.23-1 libk5crypto3_1.18.3-6 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-6 libkrb5support0_1.18.3-6 libksba8_1.5.0-3 libldap-2.4-2_2.4.57+dfsg-3 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-8 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-2 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-9 libpam-modules-bin_1.4.0-9 libpam-runtime_1.4.0-9 libpam0g_1.4.0-9 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-4+deb11u1 libpipeline1_1.5.3-1 libreadline8_8.1-1 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.36.1-8 libsqlite3-0_3.34.1-3 libss2_1.46.2-2 libssl1.1_1.1.1k-1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.3-6+rpi1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-15 libubsan1_10.2.1-6+rpi1 libuchardet0_0.0.7-1 libudev1_247.3-6+rpi1 libunistring2_0.9.10-4 libuuid1_2.36.1-8 libxml2_2.9.10+dfsg-6.7 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.2-2 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.36.1-8 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 netbase_6.3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-4+deb11u1 perl-base_5.32.1-4+deb11u1 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pirs-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.17 sysvinit-utils_2.96-7 tar_1.34+dfsg-1 tzdata_2021a-1 util-linux_2.36.1-8 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.STfnOFpD/trustedkeys.kbx': General error
gpgv: Signature made Tue Aug 31 14:19:15 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./pirs_2.0.2+dfsg-10.dsc
dpkg-source: info: extracting pirs in /<<BUILDDIR>>/pirs-2.0.2+dfsg
dpkg-source: info: unpacking pirs_2.0.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking pirs_2.0.2+dfsg-10.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_libgzstream.patch
dpkg-source: info: applying Fix-spelling-of-sse2-option.patch
dpkg-source: info: applying do_not_seek_for_arial.ttf.patch
dpkg-source: info: applying Remove-mtune-compiler-flag.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-e3a90b0c-d5f5-41ca-bd06-4f6fb037f531
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package pirs
dpkg-buildpackage: info: source version 2.0.2+dfsg-10
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --sourcedirectory=src
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_auto_clean
cd src && ./srclean.sh >/dev/null 2>/dev/null || true
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_autoreconf_clean -O--sourcedirectory=src
dh_clean -O--sourcedirectory=src
debian/rules binary-arch
dh binary-arch --sourcedirectory=src
dh_update_autotools_config -a -O--sourcedirectory=src
debian/rules override_dh_autoreconf
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
cd src && \
mv INSTALL INSTALL.save && \
autoreconf --install && \
mv INSTALL.save INSTALL && \
cd /<<BUILDDIR>>/pirs-2.0.2+dfsg
configure.ac:9: installing './compile'
configure.ac:3: installing './install-sh'
configure.ac:3: installing './missing'
Makefile.am: installing './INSTALL'
pirs/Makefile.am:28: warning: source file 'SFMT-src-1.4/SFMT.c' is in a subdirectory,
pirs/Makefile.am:28: but option 'subdir-objects' is disabled
automake: warning: possible forward-incompatibility.
automake: At least a source file is in a subdirectory, but the 'subdir-objects'
automake: automake option hasn't been enabled. For now, the corresponding output
automake: object file(s) will be placed in the top-level directory. However,
automake: this behaviour will change in future Automake versions: they will
automake: unconditionally cause object files to be placed in the same subdirectory
automake: of the corresponding sources.
automake: You are advised to start using 'subdir-objects' option throughout your
automake: project, to avoid future incompatibilities.
pirs/Makefile.am: installing './depcomp'
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_auto_configure -- --enable-pirs-diploid --disable-sse2
cd src && ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-pirs-diploid --disable-sse2
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of g++... none
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for gzopen in -lz... yes
checking Whether to include support for 'pirs diploid' command... yes
checking Whether to include support for 'pirs simulate' command... yes
checking Whether to include support for multiple threads... yes
checking for g++ option to support OpenMP... -fopenmp
checking Whether to include support for SSE2 instructions... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating pirs/Makefile
config.status: creating config.h
config.status: executing depfiles commands
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_auto_build
cd src && make -j4
make[2]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
(CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/bash '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src/missing' autoheader)
rm -f stamp-h1
touch config.h.in
cd . && /bin/bash ./config.status config.h
config.status: creating config.h
config.status: config.h is unchanged
make all-recursive
make[3]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
Making all in pirs
make[4]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src/pirs'
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o InputStream.o InputStream.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o OutputStream.o OutputStream.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o main.o main.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o util.o util.cpp
main.cpp:18:19: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
18 | "Compile Date: " __DATE__ " time: " __TIME__ "\n"
| ^~~~~~~~
main.cpp:18:38: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
18 | "Compile Date: " __DATE__ " time: " __TIME__ "\n"
| ^~~~~~~~
In file included from InputStream.cpp:1:
InputStream.h: In constructor 'InputStream::InputStream()':
InputStream.h:50:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
50 | memset(this, 0, sizeof(*this));
| ^
InputStream.h:25:7: note: 'class InputStream' declared here
25 | class InputStream {
| ^~~~~~~~~~~
InputStream.h: In constructor 'InputStream::InputStream(const char*)':
InputStream.h:54:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ^
InputStream.h:25:7: note: 'class InputStream' declared here
25 | class InputStream {
| ^~~~~~~~~~~
In file included from OutputStream.cpp:1:
OutputStream.h: In constructor 'OutputStream::OutputStream()':
OutputStream.h:54:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class OutputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ^
OutputStream.h:33:7: note: 'class OutputStream' declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
OutputStream.h: In constructor 'OutputStream::OutputStream(const char*, OutputType)':
OutputStream.h:58:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class OutputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
58 | memset(this, 0, sizeof(*this));
| ^
OutputStream.h:33:7: note: 'class OutputStream' declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
In file included from util.cpp:18:
InputStream.h: In constructor 'InputStream::InputStream()':
InputStream.h:50:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
50 | memset(this, 0, sizeof(*this));
| ^
InputStream.h:25:7: note: 'class InputStream' declared here
25 | class InputStream {
| ^~~~~~~~~~~
InputStream.h: In constructor 'InputStream::InputStream(const char*)':
InputStream.h:54:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ^
InputStream.h:25:7: note: 'class InputStream' declared here
25 | class InputStream {
| ^~~~~~~~~~~
util.cpp: In function 'void* xmalloc(size_t)':
util.cpp:192:51: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
192 | fatal_error("Out of memory: tried to allocate %lu bytes", size);
| ~~^ ~~~~
| | |
| | size_t {aka unsigned int}
| long unsigned int
| %u
util.cpp: In function 'void* xrealloc(void*, size_t)':
util.cpp:200:53: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
200 | fatal_error("Out of memory: tried to reallocate %lu bytes", size);
| ~~^ ~~~~
| | |
| | size_t {aka unsigned int}
| long unsigned int
| %u
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mt19937-64.o mt19937-64.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pirs_diploid.o pirs_diploid.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o BaseCallingProfile.o BaseCallingProfile.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o GCBiasProfile.o GCBiasProfile.cpp
pirs_diploid.cpp:639:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
639 | info(" [%#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
| ^
pirs_diploid.cpp:639:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
639 | info(" [%#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
| ^
pirs_diploid.cpp:639:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
639 | info(" [%#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
| ^
pirs_diploid.cpp:641:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
641 | info(" %#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
| ^
pirs_diploid.cpp:641:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
641 | info(" %#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
| ^
pirs_diploid.cpp:641:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
641 | info(" %#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
| ^
pirs_diploid.cpp:643:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
643 | info(" %#"PRIx64"]\n", het_type_tab[6]);
| ^
In file included from pirs_diploid.cpp:11:
InputStream.h: In constructor 'InputStream::InputStream()':
InputStream.h:50:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
50 | memset(this, 0, sizeof(*this));
| ^
InputStream.h:25:7: note: 'class InputStream' declared here
25 | class InputStream {
| ^~~~~~~~~~~
InputStream.h: In constructor 'InputStream::InputStream(const char*)':
InputStream.h:54:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ^
InputStream.h:25:7: note: 'class InputStream' declared here
25 | class InputStream {
| ^~~~~~~~~~~
In file included from pirs_diploid.cpp:12:
OutputStream.h: In constructor 'OutputStream::OutputStream()':
OutputStream.h:54:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class OutputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ^
OutputStream.h:33:7: note: 'class OutputStream' declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
OutputStream.h: In constructor 'OutputStream::OutputStream(const char*, OutputType)':
OutputStream.h:58:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class OutputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
58 | memset(this, 0, sizeof(*this));
| ^
OutputStream.h:33:7: note: 'class OutputStream' declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
In file included from SimulationParameters.h:6,
from BaseCallingProfile.h:7,
from BaseCallingProfile.cpp:5:
InputStream.h: In constructor 'InputStream::InputStream()':
InputStream.h:50:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
50 | memset(this, 0, sizeof(*this));
| ^
InputStream.h:25:7: note: 'class InputStream' declared here
25 | class InputStream {
| ^~~~~~~~~~~
InputStream.h: In constructor 'InputStream::InputStream(const char*)':
InputStream.h:54:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ^
InputStream.h:25:7: note: 'class InputStream' declared here
25 | class InputStream {
| ^~~~~~~~~~~
In file included from SimulationParameters.h:7,
from BaseCallingProfile.h:7,
from BaseCallingProfile.cpp:5:
OutputStream.h: In constructor 'OutputStream::OutputStream()':
OutputStream.h:54:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class OutputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ^
OutputStream.h:33:7: note: 'class OutputStream' declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
OutputStream.h: In constructor 'OutputStream::OutputStream(const char*, OutputType)':
OutputStream.h:58:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class OutputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
58 | memset(this, 0, sizeof(*this));
| ^
OutputStream.h:33:7: note: 'class OutputStream' declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
pirs_diploid.cpp: In function 'bool try_indel(const double*, const size_t*, const std::vector<char>&, size_t&, std::vector<char>&, bool, const char*, Counter&)':
pirs_diploid.cpp:435:32: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=]
435 | indel_log_file.printf("%s\t%zu\t%zu\t%c\t%zu\t",
| ~~^
| |
| unsigned int
| %llu
436 | id, log_ref_seq_idx, log_diploid_seq_idx,
| ~~~~~~~~~~~~~~~
| |
| uint64_t {aka long long unsigned int}
pirs_diploid.cpp:435:37: warning: format '%zu' expects argument of type 'size_t', but argument 5 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=]
435 | indel_log_file.printf("%s\t%zu\t%zu\t%c\t%zu\t",
| ~~^
| |
| unsigned int
| %llu
436 | id, log_ref_seq_idx, log_diploid_seq_idx,
| ~~~~~~~~~~~~~~~~~~~
| |
| uint64_t {aka long long unsigned int}
In file included from SimulationParameters.h:6,
from GCBiasProfile.h:5,
from GCBiasProfile.cpp:5:
InputStream.h: In constructor 'InputStream::InputStream()':
InputStream.h:50:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
50 | memset(this, 0, sizeof(*this));
| ^
InputStream.h:25:7: note: 'class InputStream' declared here
25 | class InputStream {
| ^~~~~~~~~~~
InputStream.h: In constructor 'InputStream::InputStream(const char*)':
InputStream.h:54:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ^
InputStream.h:25:7: note: 'class InputStream' declared here
25 | class InputStream {
| ^~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o IndelProfile.o IndelProfile.cpp
In file included from SimulationParameters.h:7,
from GCBiasProfile.h:5,
from GCBiasProfile.cpp:5:
OutputStream.h: In constructor 'OutputStream::OutputStream()':
OutputStream.h:54:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class OutputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ^
OutputStream.h:33:7: note: 'class OutputStream' declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
OutputStream.h: In constructor 'OutputStream::OutputStream(const char*, OutputType)':
OutputStream.h:58:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class OutputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
58 | memset(this, 0, sizeof(*this));
| ^
OutputStream.h:33:7: note: 'class OutputStream' declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from GCBiasProfile.cpp:3:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from GCBiasProfile.cpp:3:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o MaskQvalsByEamss.o MaskQvalsByEamss.cpp
In file included from SimulationParameters.h:6,
from IndelProfile.cpp:2:
InputStream.h: In constructor 'InputStream::InputStream()':
InputStream.h:50:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
50 | memset(this, 0, sizeof(*this));
| ^
InputStream.h:25:7: note: 'class InputStream' declared here
25 | class InputStream {
| ^~~~~~~~~~~
InputStream.h: In constructor 'InputStream::InputStream(const char*)':
InputStream.h:54:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ^
InputStream.h:25:7: note: 'class InputStream' declared here
25 | class InputStream {
| ^~~~~~~~~~~
In file included from SimulationParameters.h:7,
from IndelProfile.cpp:2:
OutputStream.h: In constructor 'OutputStream::OutputStream()':
OutputStream.h:54:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class OutputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ^
OutputStream.h:33:7: note: 'class OutputStream' declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
OutputStream.h: In constructor 'OutputStream::OutputStream(const char*, OutputType)':
OutputStream.h:58:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class OutputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
58 | memset(this, 0, sizeof(*this));
| ^
OutputStream.h:33:7: note: 'class OutputStream' declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Profile.o Profile.cpp
IndelProfile.cpp: In function 'void load_indel_info_line(char*, Profile&)':
IndelProfile.cpp:117:44: warning: format '%lu' expects argument of type 'long unsigned int*', but argument 3 has type 'uint64_t*' {aka 'long long unsigned int*'} [-Wformat=]
117 | } else if (sscanf(line, "Read_1_Count = %lu", &n) == 1)
| ~~^ ~~
| | |
| | uint64_t* {aka long long unsigned int*}
| long unsigned int*
| %llu
IndelProfile.cpp:119:42: warning: format '%lu' expects argument of type 'long unsigned int*', but argument 3 has type 'uint64_t*' {aka 'long long unsigned int*'} [-Wformat=]
119 | else if (sscanf(line, "Read_2_Count = %lu", &n) == 1)
| ~~^ ~~
| | |
| | uint64_t* {aka long long unsigned int*}
| long unsigned int*
| %llu
IndelProfile.cpp: In constructor 'IndelProfile::IndelProfile(const SimulationParameters&)':
IndelProfile.cpp:165:30: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=]
165 | info(" read_1_count = %lu\n", read_1_count);
| ~~^ ~~~~~~~~~~~~
| | |
| | uint64_t {aka long long unsigned int}
| long unsigned int
| %llu
IndelProfile.cpp:166:30: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=]
166 | info(" read_2_count = %lu\n", read_2_count);
| ~~^ ~~~~~~~~~~~~
| | |
| | uint64_t {aka long long unsigned int}
| long unsigned int
| %llu
g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pirs_simulate.o pirs_simulate.cpp
In file included from Profile.cpp:2:
InputStream.h: In constructor 'InputStream::InputStream()':
InputStream.h:50:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
50 | memset(this, 0, sizeof(*this));
| ^
InputStream.h:25:7: note: 'class InputStream' declared here
25 | class InputStream {
| ^~~~~~~~~~~
InputStream.h: In constructor 'InputStream::InputStream(const char*)':
InputStream.h:54:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ^
InputStream.h:25:7: note: 'class InputStream' declared here
25 | class InputStream {
| ^~~~~~~~~~~
pirs_simulate.cpp:168:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
168 | " "DEFAULT_BASE_CALLING_PROFILE"\n"
| ^
pirs_simulate.cpp:174:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
174 | " "DEFAULT_INDEL_PROFILE"\n"
| ^
pirs_simulate.cpp:180:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
180 | " "DEFAULT_GC_BIAS_PROFILE_100",\n"
| ^
pirs_simulate.cpp:181:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
181 | " "DEFAULT_GC_BIAS_PROFILE_150",\n"
| ^
pirs_simulate.cpp:182:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
182 | " "DEFAULT_GC_BIAS_PROFILE_200",\n"
| ^
pirs_simulate.cpp:672:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
672 | out_file.printf("%cread_%d_%"PRIu64"/%d\n",
| ^
pirs_simulate.cpp:700:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
700 | info_log_file.printf("read_%d_%"PRIu64"/%d\t%s\t%s\t%zu\t%c\t%d\t%d\t",
| ^
pirs_simulate.cpp:1235:10: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1235 | info("Simulated %"PRIu64" of %"PRIu64" read pairs\n",
| ^
pirs_simulate.cpp:1235:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1235 | info("Simulated %"PRIu64" of %"PRIu64" read pairs\n",
| ^
pirs_simulate.cpp:1540:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1540 | insert_log.printf("%d\t%"PRIu64"\n", it->first, it->second);
| ^
pirs_simulate.cpp:1557:2: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1557 | "# The total number of read pairs that were simulated was %"PRIu64".\n"
| ^
pirs_simulate.cpp:1574:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1574 | error_log.printf("%d\t%"PRIu64"\t%g\n",
| ^
pirs_simulate.cpp:1579:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1579 | error_log.printf("total\t%"PRIu64"\t%g\n",
| ^
pirs_simulate.cpp:1685:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1685 | log_parameter(info_log, "Random seed: %"PRIu64"\n",
| ^
pirs_simulate.cpp:1713:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1713 | info("Program: "PROGRAM "\n");
| ^
pirs_simulate.cpp:1714:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1714 | info("Version: "VERSION "\n");
| ^
pirs_simulate.cpp:1715:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1715 | info("Author: "AUTHOR "\n");
| ^
pirs_simulate.cpp:1716:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1716 | info("Contact: "CONTACT "\n");
| ^
pirs_simulate.cpp:1717:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1717 | info("Compile Date: "__DATE__ " time: " __TIME__ "\n");
| ^
pirs_simulate.cpp:1717:25: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
1717 | info("Compile Date: "__DATE__ " time: " __TIME__ "\n");
| ^~~~~~~~
pirs_simulate.cpp:1717:44: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
1717 | info("Compile Date: "__DATE__ " time: " __TIME__ "\n");
| ^~~~~~~~
pirs_simulate.cpp:1764:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1764 | info("Bases in reference sequences: %"PRIu64"\n",
| ^
pirs_simulate.cpp:1766:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1766 | info("Read pairs simulated: %"PRIu64"\n",
| ^
pirs_simulate.cpp:1768:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1768 | info("Bases in reads: %"PRIu64"\n",
| ^
pirs_simulate.cpp:1773:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1773 | info("Substitution error count: %"PRIu64"\n",
| ^
pirs_simulate.cpp:1777:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1777 | info("Insertion count: %"PRIu64"\n",
| ^
pirs_simulate.cpp:1779:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1779 | info("Deletion count: %"PRIu64"\n",
| ^
pirs_simulate.cpp:1795:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1795 | info("Bases masked by EAMSS algorithm: %"PRIu64"\n", counters.masked_bases);
| ^
pirs_simulate.cpp:1856:8: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1856 | info("Note: A random seed (%"PRIu64") was specified on the command line.\n",
| ^
In file included from SimulationParameters.h:6,
from BaseCallingProfile.h:7,
from pirs_simulate.cpp:14:
InputStream.h: In constructor 'InputStream::InputStream()':
InputStream.h:50:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
50 | memset(this, 0, sizeof(*this));
| ^
InputStream.h:25:7: note: 'class InputStream' declared here
25 | class InputStream {
| ^~~~~~~~~~~
InputStream.h: In constructor 'InputStream::InputStream(const char*)':
InputStream.h:54:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class InputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ^
InputStream.h:25:7: note: 'class InputStream' declared here
25 | class InputStream {
| ^~~~~~~~~~~
In file included from SimulationParameters.h:7,
from BaseCallingProfile.h:7,
from pirs_simulate.cpp:14:
OutputStream.h: In constructor 'OutputStream::OutputStream()':
OutputStream.h:54:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class OutputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ^
OutputStream.h:33:7: note: 'class OutputStream' declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
OutputStream.h: In constructor 'OutputStream::OutputStream(const char*, OutputType)':
OutputStream.h:58:32: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class OutputStream'; use assignment or value-initialization instead [-Wclass-memaccess]
58 | memset(this, 0, sizeof(*this));
| ^
OutputStream.h:33:7: note: 'class OutputStream' declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
g++ -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o pirs InputStream.o OutputStream.o main.o util.o mt19937-64.o pirs_diploid.o BaseCallingProfile.o GCBiasProfile.o IndelProfile.o MaskQvalsByEamss.o Profile.o pirs_simulate.o -lz -lz
make[4]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src/pirs'
make[4]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
make[4]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
make[3]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
make[2]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
dh_auto_build --sourcedirectory=src/stator/gcContCvgBias -- CC='$(CXX)'
cd src/stator/gcContCvgBias && make -j4 "INSTALL=install --strip-program=true" CC=\$\(CXX\)
make[2]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src/stator/gcContCvgBias'
g++ -c -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wfloat-equal self_util.cpp self_util.h
g++ -c -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wfloat-equal main.cpp
g++ -c -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wfloat-equal stat_soap_coverage.h stat_soap_coverage.cpp
self_util.cpp: In function 'char toUpper(const char&)':
self_util.cpp:182:1: warning: control reaches end of non-void function [-Wreturn-type]
182 | }
| ^
self_util.cpp: In function 'char toLower(const char&)':
self_util.cpp:190:1: warning: control reaches end of non-void function [-Wreturn-type]
190 | }
| ^
In file included from /usr/include/boost/config/header_deprecated.hpp:18,
from /usr/include/boost/progress.hpp:22,
from stat_soap_coverage.cpp:8:
/usr/include/boost/progress.hpp:23:1: note: '#pragma message: This header is deprecated. Use the facilities in <boost/timer/timer.hpp> or <boost/timer/progress_display.hpp> instead.'
23 | BOOST_HEADER_DEPRECATED( "the facilities in <boost/timer/timer.hpp> or <boost/timer/progress_display.hpp>" )
| ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/timer.hpp:21:1: note: '#pragma message: This header is deprecated. Use the facilities in <boost/timer/timer.hpp> instead.'
21 | BOOST_HEADER_DEPRECATED( "the facilities in <boost/timer/timer.hpp>" )
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/algorithm:62,
from stat_soap_coverage.cpp:5:
/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from stat_soap_coverage.cpp:5:
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1945 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from stat_soap_coverage.cpp:7:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:60,
from stat_soap_coverage.cpp:2:
/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >]':
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = double; _Val = std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> >; _KeyOfValue = std::_Select1st<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >; _Compare = std::less<double>; _Alloc = std::allocator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >]':
/usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> >, std::_Select1st<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >, std::less<double>, std::allocator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > > >::const_iterator' changed in GCC 7.1
2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const double&>, std::tuple<>}; _Key = double; _Val = std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> >; _KeyOfValue = std::_Select1st<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >; _Compare = std::less<double>; _Alloc = std::allocator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >]':
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> >, std::_Select1st<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >, std::less<double>, std::allocator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > > >::const_iterator' changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from stat_soap_coverage.cpp:7:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void stat_soap_coverage::statDepth()':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from stat_soap_coverage.cpp:5:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from stat_soap_coverage.cpp:2:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> >, std::_Select1st<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >, std::less<double>, std::allocator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> >, std::_Select1st<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >, std::less<double>, std::allocator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:60,
from stat_soap_coverage.cpp:2:
/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<double&&>, std::tuple<>}; _Key = double; _Val = std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> >; _KeyOfValue = std::_Select1st<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >; _Compare = std::less<double>; _Alloc = std::allocator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >]':
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> >, std::_Select1st<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >, std::less<double>, std::allocator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > > >::const_iterator' changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const double&>, std::tuple<>}; _Key = double; _Val = std::pair<const double, std::vector<double> >; _KeyOfValue = std::_Select1st<std::pair<const double, std::vector<double> > >; _Compare = std::less<double>; _Alloc = std::allocator<std::pair<const double, std::vector<double> > >]':
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
In file included from /usr/include/c++/10/map:61,
from stat_soap_coverage.cpp:2:
/usr/include/c++/10/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = double; _Tp = std::vector<double>; _Compare = std::less<double>; _Alloc = std::allocator<std::pair<const double, std::vector<double> > >]':
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h: In member function 'void stat_soap_coverage::StatGC()':
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> >, std::_Select1st<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >, std::less<double>, std::allocator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> >, std::_Select1st<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > >, std::less<double>, std::allocator<std::pair<const double, std::map<std::__cxx11::basic_string<char>, long long unsigned int> > > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from stat_soap_coverage.cpp:7:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from stat_soap_coverage.cpp:7:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void stat_soap_coverage::StatCoverage()':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from stat_soap_coverage.cpp:5:
/usr/include/c++/10/bits/stl_algo.h: In member function 'void stat_soap_coverage::DealStat()':
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from stat_soap_coverage.cpp:2:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from stat_soap_coverage.cpp:5:
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from stat_soap_coverage.cpp:7:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from stat_soap_coverage.cpp:7:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from stat_soap_coverage.cpp:7:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from stat_soap_coverage.cpp:7:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from stat_soap_coverage.cpp:7:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from stat_soap_coverage.cpp:2:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from stat_soap_coverage.cpp:7:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from stat_soap_coverage.cpp:2:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, std::vector<double> >, std::_Select1st<std::pair<const double, std::vector<double> > >, std::less<double>, std::allocator<std::pair<const double, std::vector<double> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from stat_soap_coverage.cpp:5:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
g++ -o gc_coverage_bias -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wfloat-equal self_util.o main.o stat_soap_coverage.o -Wl,-z,relro -Wl,-z,now -lgzstream -lz
make[2]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src/stator/gcContCvgBias'
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_auto_test -a -O--sourcedirectory=src
cd src && make -j4 check VERBOSE=1
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
Making check in pirs
make[2]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src/pirs'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src/pirs'
make[2]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
make[2]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg/src'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--sourcedirectory=src
dh_prep -a -O--sourcedirectory=src
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_auto_install --sourcedirectory=src/stator/gcContCvgBias
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_install
mkdir -p debian/pirs/usr/lib/pirs
find src -name "*.pl" -exec cp -a \{\} debian/pirs/usr/lib/pirs \;
rm -f debian/pirs/usr/lib/pirs/autobam.pl
# Fix perl interpreter path
for pl in `grep -Rl '#![/usr]*/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
sed -i '1s?^#![/usr]*/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \
done
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
debian/rules override_dh_installdocs-arch
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_installdocs -a
cp -a src/stator/readme.txt debian/pirs/usr/share/doc/pirs/strator_readme.txt
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
debian/rules override_dh_installchangelogs
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_installchangelogs NEWS
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_installsystemduser -a -O--sourcedirectory=src
dh_perl -a -O--sourcedirectory=src
debian/rules override_dh_link-arch
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_link -a
for pl in debian/pirs/usr/lib/pirs/*.pl ; do \
plname=`basename ${pl}` ; \
ln -s ../lib/pirs/${plname} debian/pirs/usr/bin/`basename ${plname} .pl` ; \
done
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_strip_nondeterminism -a -O--sourcedirectory=src
dh_compress -a -O--sourcedirectory=src
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_fixperms
find debian/*/usr/lib -name "*.pl" -exec chmod +x \{\} \;
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_missing -a -O--sourcedirectory=src
dh_dwz -a -a -O--sourcedirectory=src
dwz: debian/pirs/usr/bin/gc_coverage_bias: .debug_info section not present
dwz: Too few files for multifile optimization
dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it.
dh_dwz: warning: Common issues include no debug information at all (missing -g) and
dh_dwz: warning: compressed debug information (#931891).
dh_strip -a -a -O--sourcedirectory=src
dh_makeshlibs -a -a -O--sourcedirectory=src
dh_shlibdeps -a -a -O--sourcedirectory=src
dpkg-shlibdeps: warning: debian/pirs/usr/bin/pirs contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/pirs/usr/bin/gc_coverage_bias contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/pirs/usr/bin/pirs was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a -O--sourcedirectory=src
dh_gencontrol -a -O--sourcedirectory=src
dpkg-gencontrol: warning: package pirs: substitution variable ${perl:Depends} unused, but is defined
dpkg-gencontrol: warning: package pirs: substitution variable ${perl:Depends} unused, but is defined
dh_md5sums -a -O--sourcedirectory=src
dh_builddeb -a -O--sourcedirectory=src
dpkg-deb: building package 'pirs-dbgsym' in '../pirs-dbgsym_2.0.2+dfsg-10_armhf.deb'.
dpkg-deb: building package 'pirs' in '../pirs_2.0.2+dfsg-10_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../pirs_2.0.2+dfsg-10_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-09-06T05:45:30Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
pirs_2.0.2+dfsg-10_armhf.changes:
---------------------------------
Format: 1.8
Date: Tue, 31 Aug 2021 16:15:12 +0200
Source: pirs
Binary: pirs pirs-dbgsym
Architecture: armhf
Version: 2.0.2+dfsg-10
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
pirs - Profile based Illumina pair-end Reads Simulator
Changes:
pirs (2.0.2+dfsg-10) unstable; urgency=medium
.
* Fix watchfile to detect new versions on github (routine-update)
* Standards-Version: 4.6.0 (routine-update)
* Apply multi-arch hints.
+ pirs-examples, pirs-profiles: Add Multi-Arch: foreign.
* Use default name run-unit-test for autopkgtest script
Checksums-Sha1:
01ecefe4bf51820dff97a9b1244db15f548c2f8d 285060 pirs-dbgsym_2.0.2+dfsg-10_armhf.deb
26c248f055dbecb3c2fb2795ca4eace3c0c8a000 4999 pirs_2.0.2+dfsg-10_armhf.buildinfo
959067589607f479840d50d07eb9da3b2b553105 100644 pirs_2.0.2+dfsg-10_armhf.deb
Checksums-Sha256:
6c7bbe9b54fc4e5928cdd3020ac2e052c74659f222a2e9b3c79cf85bdb534619 285060 pirs-dbgsym_2.0.2+dfsg-10_armhf.deb
9ea300a2c7f83d722bb3c562397cd6282d5e6065235f7e625e805e5350a17fbd 4999 pirs_2.0.2+dfsg-10_armhf.buildinfo
f42a76a68415ac9ecf5092d7c1d96bece8e0e77aee6fe65e36e8b28d460f0eab 100644 pirs_2.0.2+dfsg-10_armhf.deb
Files:
4a53b26a81922f3b52d526e54ac1ecf1 285060 debug optional pirs-dbgsym_2.0.2+dfsg-10_armhf.deb
20a778a4065297a58557f36d6c582d55 4999 science optional pirs_2.0.2+dfsg-10_armhf.buildinfo
b693281e8a2aeaa53957b50228671598 100644 science optional pirs_2.0.2+dfsg-10_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
pirs-dbgsym_2.0.2+dfsg-10_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 285060 bytes: control archive=600 bytes.
411 bytes, 12 lines control
212 bytes, 2 lines md5sums
Package: pirs-dbgsym
Source: pirs
Version: 2.0.2+dfsg-10
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 331
Depends: pirs (= 2.0.2+dfsg-10)
Section: debug
Priority: optional
Description: debug symbols for pirs
Build-Ids: 141f9e4d598af15e28db97f5112a607a642c8721 68e034b51a7bdd2b6e43e833243932dfbb302ee1
drwxr-xr-x root/root 0 2021-08-31 14:15 ./
drwxr-xr-x root/root 0 2021-08-31 14:15 ./usr/
drwxr-xr-x root/root 0 2021-08-31 14:15 ./usr/lib/
drwxr-xr-x root/root 0 2021-08-31 14:15 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-08-31 14:15 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-08-31 14:15 ./usr/lib/debug/.build-id/14/
-rw-r--r-- root/root 28760 2021-08-31 14:15 ./usr/lib/debug/.build-id/14/1f9e4d598af15e28db97f5112a607a642c8721.debug
drwxr-xr-x root/root 0 2021-08-31 14:15 ./usr/lib/debug/.build-id/68/
-rw-r--r-- root/root 297896 2021-08-31 14:15 ./usr/lib/debug/.build-id/68/e034b51a7bdd2b6e43e833243932dfbb302ee1.debug
drwxr-xr-x root/root 0 2021-08-31 14:15 ./usr/share/
drwxr-xr-x root/root 0 2021-08-31 14:15 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-08-31 14:15 ./usr/share/doc/pirs-dbgsym -> pirs
pirs_2.0.2+dfsg-10_armhf.deb
----------------------------
new Debian package, version 2.0.
size 100644 bytes: control archive=1744 bytes.
1395 bytes, 27 lines control
1660 bytes, 25 lines md5sums
Package: pirs
Version: 2.0.2+dfsg-10
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 337
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libgomp1 (>= 4.9), libgzstream0 (>= 1.5+dfsg), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.0.2), pirs-profiles, fonts-liberation, gnuplot
Section: science
Priority: optional
Homepage: https://github.com/galaxy001/pirs
Description: Profile based Illumina pair-end Reads Simulator
The program pIRS can be used for simulating Illumina PE reads, with a
series of characters generated by Illumina sequencing platform, such as
insert size distribution, sequencing error(substitution, insertion,
deletion), quality score and GC content-coverage bias.
.
The insert size follows a normal distribution, so users should set the
mean value and standard deviation. Usually the standard deviation is set
as 1/20 of the mean value. The normal distribution by Box-Muller method
is simulated.
.
The program simulates sequencing error, quality score and GC content-
coverage bias according to the empirical distribution profile. Some
default profiles counted from lots of real sequencing data are provided.
.
To simulate reads from diploid genome, users should simulate the diploid
genome sequence firstly by setting the ratio of heterozygosis SNP,
heterozygosis InDel and structure variation.
drwxr-xr-x root/root 0 2021-08-31 14:15 ./
drwxr-xr-x root/root 0 2021-08-31 14:15 ./usr/
drwxr-xr-x root/root 0 2021-08-31 14:15 ./usr/bin/
lrwxrwxrwx root/root 0 2021-08-31 14:15 ./usr/bin/alignment_stator -> ../lib/pirs/alignment_stator.pl
lrwxrwxrwx root/root 0 2021-08-31 14:15 ./usr/bin/baseCalling_Matrix_analyzer -> ../lib/pirs/baseCalling_Matrix_analyzer.pl
lrwxrwxrwx root/root 0 2021-08-31 14:15 ./usr/bin/baseCalling_Matrix_calculator -> ../lib/pirs/baseCalling_Matrix_calculator.pl
lrwxrwxrwx root/root 0 2021-08-31 14:15 ./usr/bin/baseCalling_Matrix_calculator.0 -> ../lib/pirs/baseCalling_Matrix_calculator.0.pl
lrwxrwxrwx root/root 0 2021-08-31 14:15 ./usr/bin/baseCalling_Matrix_merger -> ../lib/pirs/baseCalling_Matrix_merger.pl
lrwxrwxrwx root/root 0 2021-08-31 14:15 ./usr/bin/baseCalling_Matrix_merger.old -> ../lib/pirs/baseCalling_Matrix_merger.old.pl
-rwxr-xr-x root/root 91796 2021-08-31 14:15 ./usr/bin/gc_coverage_bias
lrwxrwxrwx root/root 0 2021-08-31 14:15 ./usr/bin/gc_coverage_bias_plot -> ../lib/pirs/gc_coverage_bias_plot.pl
lrwxrwxrwx root/root 0 2021-08-31 14:15 ./usr/bin/gethist -> ../lib/pirs/gethist.pl
lrwxrwxrwx root/root 0 2021-08-31 14:15 ./usr/bin/ifollowQ -> ../lib/pirs/ifollowQ.pl
lrwxrwxrwx root/root 0 2021-08-31 14:15 ./usr/bin/ifollowQmerge -> ../lib/pirs/ifollowQmerge.pl
lrwxrwxrwx root/root 0 2021-08-31 14:15 ./usr/bin/ifollowQplot -> ../lib/pirs/ifollowQplot.pl
lrwxrwxrwx root/root 0 2021-08-31 14:15 ./usr/bin/ifqQ -> ../lib/pirs/ifqQ.pl
lrwxrwxrwx root/root 0 2021-08-31 14:15 ./usr/bin/indelstat_sam_bam -> ../lib/pirs/indelstat_sam_bam.pl
lrwxrwxrwx root/root 0 2021-08-31 14:15 ./usr/bin/itilestator -> ../lib/pirs/itilestator.pl
lrwxrwxrwx root/root 0 2021-08-31 14:15 ./usr/bin/loess -> ../lib/pirs/loess.pl
lrwxrwxrwx root/root 0 2021-08-31 14:15 ./usr/bin/pifollowQmerge -> ../lib/pirs/pifollowQmerge.pl
-rwxr-xr-x root/root 87600 2021-08-31 14:15 ./usr/bin/pirs
drwxr-xr-x root/root 0 2021-08-31 14:15 ./usr/lib/
drwxr-xr-x root/root 0 2021-08-31 14:15 ./usr/lib/pirs/
-rwxr-xr-x root/root 15714 2021-08-31 14:15 ./usr/lib/pirs/alignment_stator.pl
-rwxr-xr-x root/root 11244 2021-08-31 14:15 ./usr/lib/pirs/baseCalling_Matrix_analyzer.pl
-rwxr-xr-x root/root 20935 2021-08-31 14:15 ./usr/lib/pirs/baseCalling_Matrix_calculator.0.pl
-rwxr-xr-x root/root 19564 2021-08-31 14:15 ./usr/lib/pirs/baseCalling_Matrix_calculator.pl
-rwxr-xr-x root/root 5672 2021-08-31 14:15 ./usr/lib/pirs/baseCalling_Matrix_merger.old.pl
-rwxr-xr-x root/root 6280 2021-08-31 14:15 ./usr/lib/pirs/baseCalling_Matrix_merger.pl
-rwxr-xr-x root/root 3231 2021-08-31 14:15 ./usr/lib/pirs/gc_coverage_bias_plot.pl
-rwxr-xr-x root/root 358 2021-08-31 14:15 ./usr/lib/pirs/gethist.pl
-rwxr-xr-x root/root 4055 2021-08-31 14:15 ./usr/lib/pirs/ifollowQ.pl
-rwxr-xr-x root/root 3530 2021-08-31 14:15 ./usr/lib/pirs/ifollowQmerge.pl
-rwxr-xr-x root/root 613 2021-08-31 14:15 ./usr/lib/pirs/ifollowQplot.pl
-rwxr-xr-x root/root 1820 2021-08-31 14:15 ./usr/lib/pirs/ifqQ.pl
-rwxr-xr-x root/root 7228 2021-08-31 14:15 ./usr/lib/pirs/indelstat_sam_bam.pl
-rwxr-xr-x root/root 2679 2021-08-31 14:15 ./usr/lib/pirs/itilestator.pl
-rwxr-xr-x root/root 1460 2016-08-14 05:10 ./usr/lib/pirs/loess.pl
-rwxr-xr-x root/root 3080 2021-08-31 14:15 ./usr/lib/pirs/pifollowQmerge.pl
drwxr-xr-x root/root 0 2021-08-31 14:15 ./usr/share/
drwxr-xr-x root/root 0 2021-08-31 14:15 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-08-31 14:15 ./usr/share/doc/pirs/
-rw-r--r-- root/root 7184 2016-08-14 05:10 ./usr/share/doc/pirs/README.gz
-rw-r--r-- root/root 313 2021-08-31 14:15 ./usr/share/doc/pirs/README.test
-rw-r--r-- root/root 1318 2021-08-31 14:15 ./usr/share/doc/pirs/changelog.Debian.gz
-rw-r--r-- root/root 3446 2016-08-14 05:10 ./usr/share/doc/pirs/changelog.gz
-rw-r--r-- root/root 2931 2021-08-31 14:15 ./usr/share/doc/pirs/copyright
-rw-r--r-- root/root 1067 2021-08-31 14:15 ./usr/share/doc/pirs/run-unit-test
-rw-r--r-- root/root 1288 2016-08-14 05:10 ./usr/share/doc/pirs/strator_readme.txt
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 44520
Build-Time: 216
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 330
Job: pirs_2.0.2+dfsg-10
Machine Architecture: armhf
Package: pirs
Package-Time: 601
Source-Version: 2.0.2+dfsg-10
Space: 44520
Status: successful
Version: 2.0.2+dfsg-10
--------------------------------------------------------------------------------
Finished at 2021-09-06T05:45:30Z
Build needed 00:10:01, 44520k disc space