pinfish →
0.1.0+ds-4 →
armhf → 2024-02-14 11:22:39
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| pinfish 0.1.0+ds-4 (armhf) Wed, 14 Feb 2024 11:03:38 +0000 |
+==============================================================================+
Package: pinfish
Version: 0.1.0+ds-4
Source Version: 0.1.0+ds-4
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/trixie-staging-armhf-sbuild-e4f811e0-a25a-47bb-9312-93ad6aafee70' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.4 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.1 MB]
Fetched 29.6 MB in 30s (1001 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'pinfish' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/pinfish.git
Please use:
git clone https://salsa.debian.org/med-team/pinfish.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 73.6 MB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main pinfish 0.1.0+ds-4 (dsc) [2529 B]
Get:2 http://172.17.4.1/private trixie-staging/main pinfish 0.1.0+ds-4 (tar) [68.6 MB]
Get:3 http://172.17.4.1/private trixie-staging/main pinfish 0.1.0+ds-4 (tar) [5055 kB]
Get:4 http://172.17.4.1/private trixie-staging/main pinfish 0.1.0+ds-4 (diff) [6600 B]
Fetched 73.6 MB in 7s (11.1 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pinfish-ZSVCA9/pinfish-0.1.0+ds' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pinfish-ZSVCA9' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-HjCl02/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-HjCl02/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-HjCl02/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-HjCl02/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-HjCl02/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-HjCl02/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-HjCl02/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-HjCl02/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2571 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 29 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-HjCl02/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (20.2 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12880 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-google-uuid-dev, samtools
Filtered Build-Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-google-uuid-dev, samtools
dpkg-deb: building package 'sbuild-build-depends-pinfish-dummy' in '/<<BUILDDIR>>/resolver-HjCl02/apt_archive/sbuild-build-depends-pinfish-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-pinfish-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-HjCl02/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-HjCl02/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-HjCl02/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-HjCl02/apt_archive ./ Sources [538 B]
Get:5 copy:/<<BUILDDIR>>/resolver-HjCl02/apt_archive ./ Packages [621 B]
Fetched 2492 B in 1s (3569 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install pinfish build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-golang dh-strip-nondeterminism dwz file gettext
gettext-base golang-1.21-go golang-1.21-src golang-any
golang-github-biogo-biogo-dev golang-github-biogo-hts-dev
golang-github-creack-pty-dev golang-github-google-uuid-dev
golang-github-kr-pretty-dev golang-github-kr-text-dev
golang-github-rogpeppe-go-internal-dev golang-github-ulikunitz-xz-dev
golang-github-yuin-goldmark-dev golang-go golang-golang-x-crypto-dev
golang-golang-x-mod-dev golang-golang-x-net-dev golang-golang-x-sync-dev
golang-golang-x-sys-dev golang-golang-x-term-dev golang-golang-x-text-dev
golang-golang-x-tools-dev golang-gopkg-check.v1-dev golang-src groff-base
intltool-debian libarchive-zip-perl libbrotli1 libcurl3-gnutls
libdebhelper-perl libdeflate0 libelf1 libfile-stripnondeterminism-perl
libhts3 libhtscodecs2 libicu72 libmagic-mgc libmagic1 libncurses6
libnghttp2-14 libpipeline1 libpsl5 librtmp1 libssh2-1 libsub-override-perl
libtool libuchardet0 libxml2 m4 man-db po-debconf samtools
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev bzr | brz ca-certificates git mercurial
subversion groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
apparmor less www-browser libmail-box-perl cwltool
Recommended packages:
curl | wget | lynx pkg-config ca-certificates libarchive-cpio-perl libgpm2
publicsuffix libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-golang dh-strip-nondeterminism dwz file gettext
gettext-base golang-1.21-go golang-1.21-src golang-any
golang-github-biogo-biogo-dev golang-github-biogo-hts-dev
golang-github-creack-pty-dev golang-github-google-uuid-dev
golang-github-kr-pretty-dev golang-github-kr-text-dev
golang-github-rogpeppe-go-internal-dev golang-github-ulikunitz-xz-dev
golang-github-yuin-goldmark-dev golang-go golang-golang-x-crypto-dev
golang-golang-x-mod-dev golang-golang-x-net-dev golang-golang-x-sync-dev
golang-golang-x-sys-dev golang-golang-x-term-dev golang-golang-x-text-dev
golang-golang-x-tools-dev golang-gopkg-check.v1-dev golang-src groff-base
intltool-debian libarchive-zip-perl libbrotli1 libcurl3-gnutls
libdebhelper-perl libdeflate0 libelf1 libfile-stripnondeterminism-perl
libhts3 libhtscodecs2 libicu72 libmagic-mgc libmagic1 libncurses6
libnghttp2-14 libpipeline1 libpsl5 librtmp1 libssh2-1 libsub-override-perl
libtool libuchardet0 libxml2 m4 man-db po-debconf samtools
sbuild-build-depends-pinfish-dummy
0 upgraded, 65 newly installed, 0 to remove and 29 not upgraded.
Need to get 69.4 MB of archives.
After this operation, 371 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-HjCl02/apt_archive ./ sbuild-build-depends-pinfish-dummy 0.invalid.0 [904 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.8-1 [65.5 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.3-6 [81.4 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-3 [1358 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-14 [157 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-14 [496 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.13 [85.0 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.10-1 [10.6 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:23 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-14 [1203 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.13 [889 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf dh-golang all 1.62 [24.7 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf golang-1.21-src all 1.21.6-1+rpi1 [18.5 MB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf golang-1.21-go armhf 1.21.6-1+rpi1 [20.7 MB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf golang-src all 2:1.21~2 [4804 B]
Get:35 http://172.17.4.1/private trixie-staging/main armhf golang-go armhf 2:1.21~2 [44.0 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf golang-any armhf 2:1.21~2 [4912 B]
Get:37 http://172.17.4.1/private trixie-staging/main armhf golang-github-ulikunitz-xz-dev all 0.5.6-2 [352 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf golang-github-biogo-hts-dev all 1.4.4+dfsg1-1 [319 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf golang-github-creack-pty-dev all 1.1.21-1 [13.0 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf golang-github-kr-text-dev all 0.2.0-2 [10.2 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf golang-golang-x-mod-dev all 0.14.0-1 [103 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf golang-golang-x-sys-dev all 0.16.0-1 [399 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf golang-github-yuin-goldmark-dev all 1.6.0-1 [113 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf golang-golang-x-term-dev all 0.16.0-1 [14.7 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf golang-golang-x-text-dev all 0.14.0-1 [3996 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf golang-golang-x-crypto-dev all 1:0.18.0-1 [1668 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf golang-golang-x-net-dev all 1:0.20.0+dfsg-1 [882 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf golang-golang-x-sync-dev all 0.6.0-1 [18.5 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf golang-golang-x-tools-dev all 1:0.17.0+ds-1 [1559 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf golang-github-rogpeppe-go-internal-dev all 1.11.0-1 [99.3 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf golang-github-kr-pretty-dev all 0.3.1-1 [11.9 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf golang-gopkg-check.v1-dev all 0.0+git20200902.038fdea-1 [32.1 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf golang-github-biogo-biogo-dev all 1.0.4-1 [189 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf golang-github-google-uuid-dev all 1.3.0-1 [17.0 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.1.0-2 [280 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.59.0-1 [61.9 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-4 [195 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 8.5.0-2+rpi1 [372 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.19-1 [39.0 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libhtscodecs2 armhf 1.6.0-1 [60.3 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf libhts3 armhf 1.18+ds-1 [380 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.4+20240113-1 [80.9 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf samtools armhf 1.19-1 [593 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package libuchardet0:armhf.
(Reading database ... 12880 files and directories currently installed.)
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Setting up golang-golang-x-mod-dev (0.14.0-1) ...
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Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up dh-autoreconf (20) ...
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Setting up golang-golang-x-net-dev (1:0.20.0+dfsg-1) ...
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Not building database; man-db/auto-update is not 'true'.
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Setting up debhelper (13.13) ...
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Setting up golang-github-biogo-biogo-dev (1.0.4-1) ...
Setting up dh-golang (1.62) ...
Setting up sbuild-build-depends-pinfish-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.37-13+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.2+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-9+rpi1 gcc-12_12.3.0-13+rpi1 gcc-13_13.2.0-9+rpi1 libc6-dev_2.37-13+rpi1 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-9+rpi1 libstdc++6_13.2.0-9+rpi1 linux-libc-dev_6.5.6-1+rpi1+b1
Package versions: adduser_3.137 apt_2.7.9 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.3-6 bsdutils_1:2.39.3-6 build-essential_12.10 bzip2_1.0.8-5+b2 coreutils_9.4-3 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-13+rpi1 cpp-13_13.2.0-9+rpi1 dash_0.5.12-6 debconf_1.5.83 debhelper_13.13 debianutils_5.16 dh-autoreconf_20 dh-golang_1.62 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dpkg_1.22.2+rpi1 dpkg-dev_1.22.2+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.33-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-9+rpi1 gcc_4:13.2.0-1+rpi1 gcc-12_12.3.0-13+rpi1 gcc-12-base_12.3.0-13+rpi1 gcc-13_13.2.0-9+rpi1 gcc-13-base_13.2.0-9+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-14 gettext-base_0.21-14 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 golang-1.21-go_1.21.6-1+rpi1 golang-1.21-src_1.21.6-1+rpi1 golang-any_2:1.21~2 golang-github-biogo-biogo-dev_1.0.4-1 golang-github-biogo-hts-dev_1.4.4+dfsg1-1 golang-github-creack-pty-dev_1.1.21-1 golang-github-google-uuid-dev_1.3.0-1 golang-github-kr-pretty-dev_0.3.1-1 golang-github-kr-text-dev_0.2.0-2 golang-github-rogpeppe-go-internal-dev_1.11.0-1 golang-github-ulikunitz-xz-dev_0.5.6-2 golang-github-yuin-goldmark-dev_1.6.0-1 golang-go_2:1.21~2 golang-golang-x-crypto-dev_1:0.18.0-1 golang-golang-x-mod-dev_0.14.0-1 golang-golang-x-net-dev_1:0.20.0+dfsg-1 golang-golang-x-sync-dev_0.6.0-1 golang-golang-x-sys-dev_0.16.0-1 golang-golang-x-term-dev_0.16.0-1 golang-golang-x-text-dev_0.14.0-1 golang-golang-x-tools-dev_1:0.17.0+ds-1 golang-gopkg-check.v1-dev_0.0+git20200902.038fdea-1 golang-src_2:1.21~2 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-4 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-5 libacl1_2.3.1-6 libapt-pkg6.0_2.7.9 libarchive-zip-perl_1.68-1 libasan8_13.2.0-9+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-9+rpi1 libattr1_1:2.5.1-5 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libbinutils_2.41-6+rpi1 libblkid1_2.39.3-6 libbrotli1_1.1.0-2 libbz2-1.0_1.0.8-5+b2 libc-bin_2.37-13+rpi1 libc-dev-bin_2.37-13+rpi1 libc6_2.37-13+rpi1 libc6-dev_2.37-13+rpi1 libcap-ng0_0.8.4-1 libcap2_1:2.66-4 libcap2-bin_1:2.66-4 libcc1-0_13.2.0-9+rpi1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.41-6+rpi1 libctf0_2.41-6+rpi1 libcurl3-gnutls_8.5.0-2+rpi1 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271 libdebhelper-perl_13.13 libdeflate0_1.19-1 libdpkg-perl_1.22.2+rpi1 libelf1_0.188-2.1+rpi1 libext2fs2_1.47.0-2 libfakeroot_1.33-1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.3.0-13+rpi1 libgcc-13-dev_13.2.0-9+rpi1 libgcc-s1_13.2.0-9+rpi1 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.3-1 libgomp1_13.2.0-9+rpi1 libgpg-error0_1.47-3 libgssapi-krb5-2_1.20.1-5 libhogweed6_3.9.1-2 libhts3_1.18+ds-1 libhtscodecs2_1.6.0-1 libicu72_72.1-4 libidn2-0_2.3.4-1 libisl23_0.26-3 libjansson4_2.14-2 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 libksba8_1.6.5-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1+b1 liblz4-1_1.9.4-1+rpi1+b1 liblzma5_5.4.5-0.3 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-2 libmount1_2.39.3-6 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncurses6_6.4+20240113-1 libncursesw6_6.4+20240113-1 libnettle8_3.9.1-2 libnghttp2-14_1.59.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-4 libpam-cap_1:2.66-4 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.38_5.38.2-3 libpipeline1_1.5.7-1 libpsl5_0.21.2-1+b1 libreadline8_8.2-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg1-4 libsasl2-modules-db_2.1.28+dfsg1-4 libseccomp2_2.5.4-2+rpi1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol1_3.1-1 libsepol2_3.5-2 libsframe1_2.41-6+rpi1 libsmartcols1_2.39.3-6 libsqlite3-0_3.44.2-1 libss2_1.47.0-2 libssh2-1_1.11.0-4 libssl1.1_1.1.1o-1 libssl3_3.1.4-2 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-9+rpi1 libstdc++6_13.2.0-9+rpi1 libsub-override-perl_0.10-1 libsystemd0_254.5-1+rpi1 libtasn1-6_4.19.0-3 libtext-glob-perl_0.11-3 libtinfo6_6.4+20240113-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libubsan1_13.2.0-9+rpi1 libuchardet0_0.0.8-1 libudev1_254.5-1+rpi1 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.3-6 libxml2_2.9.14+dfsg-1.3 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.6-1+rpi1+b1 login_1:4.13+dfsg1-3 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-3 mawk_1.3.4.20231126-1 mount_2.39.3-6 nano_7.2-2 ncurses-base_6.4+20240113-1 ncurses-bin_6.4+20240113-1 netbase_6.4 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.38.2-3 perl-base_5.38.2-3 perl-modules-5.38_5.38.2-3 pinentry-curses_1.2.1-3 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.2-3 rpcsvc-proto_1.4.3-1 samtools_1.19-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pinfish-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.20 sgml-base_1.31 sysvinit-utils_3.08-5 tar_1.35+dfsg-3 tzdata_2023d-1 usrmerge_38 util-linux_2.39.3-6 util-linux-extra_2.39.3-6 xz-utils_5.4.5-0.3 zlib1g_1:1.3.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: Signature made Fri Jan 12 07:59:53 2024 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./pinfish_0.1.0+ds-4.dsc: no acceptable signature found
dpkg-source: info: extracting pinfish in /<<BUILDDIR>>/pinfish-0.1.0+ds
dpkg-source: info: unpacking pinfish_0.1.0+ds.orig.tar.xz
dpkg-source: info: unpacking pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz
dpkg-source: info: unpacking pinfish_0.1.0+ds-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying remove-gonum-stat-usage.patch
dpkg-source: info: applying do-not-overflow-int.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-e4f811e0-a25a-47bb-9312-93ad6aafee70
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package pinfish
dpkg-buildpackage: info: source version 0.1.0+ds-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --builddirectory=_build --buildsystem=golang --with=golang
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/pinfish-0.1.0+ds'
dh_auto_clean
find . -name "*.bam" -delete
make[1]: Leaving directory '/<<BUILDDIR>>/pinfish-0.1.0+ds'
dh_autoreconf_clean -O--builddirectory=_build -O--buildsystem=golang
dh_clean -O--builddirectory=_build -O--buildsystem=golang
debian/rules binary-arch
dh binary-arch --builddirectory=_build --buildsystem=golang --with=golang
dh_update_autotools_config -a -O--builddirectory=_build -O--buildsystem=golang
dh_autoreconf -a -O--builddirectory=_build -O--buildsystem=golang
dh_auto_configure -a -O--builddirectory=_build -O--buildsystem=golang
dh_auto_build -a -O--builddirectory=_build -O--buildsystem=golang
cd _build && go install -trimpath -v -p 4 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff
internal/unsafeheader
internal/coverage/rtcov
internal/goarch
internal/cpu
internal/godebugs
internal/abi
internal/goexperiment
runtime/internal/math
internal/goos
runtime/internal/sys
runtime/internal/syscall
internal/bytealg
runtime/internal/atomic
internal/race
sync/atomic
unicode
unicode/utf8
encoding
internal/itoa
math/bits
crypto/internal/alias
crypto/internal/boring/sig
unicode/utf16
math
internal/nettrace
log/internal
runtime
crypto/subtle
internal/reflectlite
sync
internal/testlog
internal/singleflight
internal/bisect
runtime/cgo
errors
sort
io
internal/oserror
strconv
syscall
bytes
strings
reflect
bufio
internal/safefilepath
path
internal/syscall/unix
time
internal/syscall/execenv
github.com/biogo/biogo/feat
github.com/biogo/biogo/feat/gene
github.com/biogo/biogo/io/featio
hash
crypto
crypto/internal/randutil
internal/godebug
vendor/golang.org/x/net/dns/dnsmessage
math/rand
internal/intern
net/netip
internal/poll
io/fs
internal/fmtsort
context
encoding/binary
hash/crc32
text/tabwriter
os
container/heap
encoding/base64
crypto/md5
crypto/cipher
crypto/internal/boring
crypto/sha1
path/filepath
io/ioutil
fmt
net
os/exec
github.com/biogo/biogo/alphabet
flag
encoding/csv
math/big
github.com/biogo/biogo/seq
database/sql/driver
github.com/biogo/biogo/feat/genome
github.com/biogo/biogo/io/seqio
github.com/biogo/biogo/io/seqio/fasta
github.com/biogo/biogo/seq/linear
encoding/hex
encoding/json
github.com/biogo/biogo/io/featio/gff
log
compress/flate
crypto/rand
github.com/biogo/biogo/io/seqio/fastq
net/url
compress/gzip
github.com/biogo/hts/bgzf
runtime/pprof
github.com/biogo/hts/bgzf/index
github.com/biogo/hts/internal
github.com/biogo/hts/sam
github.com/biogo/hts/bam
github.com/nanoporetech/pinfish/spliced_bam2gff
github.com/nanoporetech/pinfish/polish_clusters
github.com/google/uuid
github.com/nanoporetech/pinfish/cluster_gff
github.com/nanoporetech/pinfish/collapse_partials
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/pinfish-0.1.0+ds'
dh_auto_test
cd _build && go test -vet=off -v -p 4 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff
? github.com/nanoporetech/pinfish/cluster_gff [no test files]
? github.com/nanoporetech/pinfish/collapse_partials [no test files]
? github.com/nanoporetech/pinfish/polish_clusters [no test files]
? github.com/nanoporetech/pinfish/spliced_bam2gff [no test files]
cat debian-tests-data/sirv_e0_sorted.sam| samtools view -Sb - > polish_clusters/test_data/sirv_e0_sorted.bam
cat debian-tests-data/sirv_errors_gmap.sam| samtools view -Sb - > spliced_bam2gff/test_data/sirv_errors_gmap.bam
cat debian-tests-data/sirv_no_errors_gmap.sam| samtools view -Sb - > spliced_bam2gff/test_data/sirv_no_errors_gmap.bam
cat debian-tests-data/sirv_simulated.sam| samtools view -Sb - > spliced_bam2gff/test_data/sirv_simulated.bam
make[1]: Leaving directory '/<<BUILDDIR>>/pinfish-0.1.0+ds'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--builddirectory=_build -O--buildsystem=golang
dh_prep -a -O--builddirectory=_build -O--buildsystem=golang
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/pinfish-0.1.0+ds'
dh_auto_install -- --no-source
cd _build && mkdir -p /<<BUILDDIR>>/pinfish-0.1.0\+ds/debian/tmp/usr
cd _build && cp -r bin /<<BUILDDIR>>/pinfish-0.1.0\+ds/debian/tmp/usr
make[1]: Leaving directory '/<<BUILDDIR>>/pinfish-0.1.0+ds'
dh_install -a -O--builddirectory=_build -O--buildsystem=golang
dh_installdocs -a -O--builddirectory=_build -O--buildsystem=golang
dh_installchangelogs -a -O--builddirectory=_build -O--buildsystem=golang
dh_installman -a -O--builddirectory=_build -O--buildsystem=golang
dh_installsystemduser -a -O--builddirectory=_build -O--buildsystem=golang
dh_perl -a -O--builddirectory=_build -O--buildsystem=golang
dh_link -a -O--builddirectory=_build -O--buildsystem=golang
dh_strip_nondeterminism -a -O--builddirectory=_build -O--buildsystem=golang
dh_compress -a -O--builddirectory=_build -O--buildsystem=golang
dh_fixperms -a -O--builddirectory=_build -O--buildsystem=golang
dh_missing -a -O--builddirectory=_build -O--buildsystem=golang
dh_strip -a -O--builddirectory=_build -O--buildsystem=golang
dh_strip: warning: Could not find the BuildID in debian/pinfish/usr/bin/spliced_bam2gff
dh_strip: warning: Could not find the BuildID in debian/pinfish/usr/bin/polish_clusters
dh_makeshlibs -a -O--builddirectory=_build -O--buildsystem=golang
dh_shlibdeps -a -O--builddirectory=_build -O--buildsystem=golang
dh_installdeb -a -O--builddirectory=_build -O--buildsystem=golang
dh_golang -a -O--builddirectory=_build -O--buildsystem=golang
dh_gencontrol -a -O--builddirectory=_build -O--buildsystem=golang
dpkg-gencontrol: warning: package pinfish: substitution variable ${misc:Static-Built-Using} unused, but is defined
dpkg-gencontrol: warning: package pinfish: substitution variable ${misc:Static-Built-Using} unused, but is defined
dh_md5sums -a -O--builddirectory=_build -O--buildsystem=golang
dh_builddeb -a -O--builddirectory=_build -O--buildsystem=golang
dpkg-deb: building package 'pinfish' in '../pinfish_0.1.0+ds-4_armhf.deb'.
dpkg-deb: building package 'pinfish-dbgsym' in '../pinfish-dbgsym_0.1.0+ds-4_armhf.deb'.
dpkg-genbuildinfo --build=any -O../pinfish_0.1.0+ds-4_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../pinfish_0.1.0+ds-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-02-14T11:22:19Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
pinfish_0.1.0+ds-4_armhf.changes:
---------------------------------
Format: 1.8
Date: Fri, 12 Jan 2024 07:23:48 +0100
Source: pinfish
Binary: pinfish pinfish-dbgsym
Architecture: armhf
Version: 0.1.0+ds-4
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
pinfish - Collection of tools to annotate genomes using long read transcrip
Closes: 1048260
Changes:
pinfish (0.1.0+ds-4) unstable; urgency=medium
.
* Team upload.
* Cleanup bam files from dh_auto_test
Closes: #1048260
* Standards-Version: 4.6.2 (routine-update)
* Remove trailing whitespace in debian/copyright (routine-update)
* Remove trailing whitespace in debian/rules (routine-update)
* No tab in license text (routine-update)
Add missing ${misc:Built-Using} to Built-Using on pinfish.
Apply multi-arch hints.
.
+ pinfish-examples: Add Multi-Arch: foreign.
Checksums-Sha1:
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17886b962f782daba574f1a6fc3374284e38867f 6746 pinfish_0.1.0+ds-4_armhf.buildinfo
a0d1a0e9c763c389c199b9c10efa4ce1729add28 1151632 pinfish_0.1.0+ds-4_armhf.deb
Checksums-Sha256:
ccac6ded27b7ee9ef7a77f7a8821027c96470a5cab8fd9872d2bd03501b0d820 1382616 pinfish-dbgsym_0.1.0+ds-4_armhf.deb
66de1ef764fe2d204d375e3f6c182feafea457feb64cd5f2ab692152a75eb984 6746 pinfish_0.1.0+ds-4_armhf.buildinfo
e761975b1fa2cff3b541038a445bdbfbbb5a35473734ed17112623f6043dfa93 1151632 pinfish_0.1.0+ds-4_armhf.deb
Files:
85a972358f55ae102015170111529e53 1382616 debug optional pinfish-dbgsym_0.1.0+ds-4_armhf.deb
2c89b1e19ca0c4916610f23054cd43db 6746 science optional pinfish_0.1.0+ds-4_armhf.buildinfo
75c616721bb0fbddd4725098d2c9ee9f 1151632 science optional pinfish_0.1.0+ds-4_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
pinfish-dbgsym_0.1.0+ds-4_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 1382616 bytes: control archive=600 bytes.
418 bytes, 12 lines control
212 bytes, 2 lines md5sums
Package: pinfish-dbgsym
Source: pinfish
Version: 0.1.0+ds-4
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1610
Depends: pinfish (= 0.1.0+ds-4)
Section: debug
Priority: optional
Description: debug symbols for pinfish
Build-Ids: 65cd14eb07f84fe6d1aaea06f5181948660537dc ba9afbeb90c97dd980903c120107a5ea19ff951b
drwxr-xr-x root/root 0 2024-01-12 06:23 ./
drwxr-xr-x root/root 0 2024-01-12 06:23 ./usr/
drwxr-xr-x root/root 0 2024-01-12 06:23 ./usr/lib/
drwxr-xr-x root/root 0 2024-01-12 06:23 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-01-12 06:23 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-01-12 06:23 ./usr/lib/debug/.build-id/65/
-rw-r--r-- root/root 817224 2024-01-12 06:23 ./usr/lib/debug/.build-id/65/cd14eb07f84fe6d1aaea06f5181948660537dc.debug
drwxr-xr-x root/root 0 2024-01-12 06:23 ./usr/lib/debug/.build-id/ba/
-rw-r--r-- root/root 818216 2024-01-12 06:23 ./usr/lib/debug/.build-id/ba/9afbeb90c97dd980903c120107a5ea19ff951b.debug
drwxr-xr-x root/root 0 2024-01-12 06:23 ./usr/share/
drwxr-xr-x root/root 0 2024-01-12 06:23 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-01-12 06:23 ./usr/share/doc/pinfish-dbgsym -> pinfish
pinfish_0.1.0+ds-4_armhf.deb
----------------------------
new Debian package, version 2.0.
size 1151632 bytes: control archive=1492 bytes.
1815 bytes, 39 lines control
666 bytes, 10 lines md5sums
Package: pinfish
Version: 0.1.0+ds-4
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 7416
Depends: libc6 (>= 2.34), minimap2, racon
Built-Using: golang-1.21 (= 1.21.6-1+rpi1), golang-github-biogo-biogo (= 1.0.4-1), golang-github-biogo-hts (= 1.4.4+dfsg1-1), golang-github-google-uuid (= 1.3.0-1)
Section: science
Priority: optional
Homepage: https://github.com/nanoporetech/pinfish
Description: Collection of tools to annotate genomes using long read transcriptomics data
The toolchain is composed of the following tools:
1. spliced_bam2gff - a tool for converting sorted BAM
files containing spliced alignments
into GFF2 format. Each read will be represented as a distinct
transcript. This tool comes handy when visualizing spliced
reads at particular loci and to provide input to the rest
of the toolchain.
.
2. cluster_gff - this tool takes a sorted GFF2 file as
input and clusters together reads having similar
exon/intron structure and creates a rough consensus
of the clusters by taking the median of exon
boundaries from all transcripts in the cluster.
.
3. polish_clusters - this tool takes the cluster
definitions generated by cluster_gff and for each
cluster creates an error corrected read by mapping
all reads on the read with the median length
and polishing it using racon. The polished reads
can be mapped to the genome using minimap2 or GMAP.
.
4. collapse_partials - this tool takes GFFs generated
by either cluster_gff or polish_clusters and filters
out transcripts which are likely to be based on RNA
degradation products from the 5' end. The tool clusters
the input transcripts into "loci" by the 3' ends and
discards transcripts which have a compatible transcripts
in the loci with more exons.
drwxr-xr-x root/root 0 2024-01-12 06:23 ./
drwxr-xr-x root/root 0 2024-01-12 06:23 ./usr/
drwxr-xr-x root/root 0 2024-01-12 06:23 ./usr/bin/
-rwxr-xr-x root/root 1878712 2024-01-12 06:23 ./usr/bin/cluster_gff
-rwxr-xr-x root/root 1882824 2024-01-12 06:23 ./usr/bin/collapse_partials
-rwxr-xr-x root/root 2006524 2024-01-12 06:23 ./usr/bin/polish_clusters
-rwxr-xr-x root/root 1808348 2024-01-12 06:23 ./usr/bin/spliced_bam2gff
drwxr-xr-x root/root 0 2024-01-12 06:23 ./usr/share/
drwxr-xr-x root/root 0 2024-01-12 06:23 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-01-12 06:23 ./usr/share/doc/pinfish/
-rw-r--r-- root/root 641 2024-01-12 06:23 ./usr/share/doc/pinfish/changelog.Debian.gz
-rw-r--r-- root/root 1281 2024-01-12 06:23 ./usr/share/doc/pinfish/copyright
drwxr-xr-x root/root 0 2024-01-12 06:23 ./usr/share/man/
drwxr-xr-x root/root 0 2024-01-12 06:23 ./usr/share/man/man1/
-rw-r--r-- root/root 532 2024-01-12 06:23 ./usr/share/man/man1/cluster_gff.1.gz
-rw-r--r-- root/root 536 2024-01-12 06:23 ./usr/share/man/man1/collapse_partials.1.gz
-rw-r--r-- root/root 548 2024-01-12 06:23 ./usr/share/man/man1/polish_clusters.1.gz
-rw-r--r-- root/root 482 2024-01-12 06:23 ./usr/share/man/man1/spliced_bam2gff.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 522760
Build-Time: 319
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 692
Job: pinfish_0.1.0+ds-4
Machine Architecture: armhf
Package: pinfish
Package-Time: 1121
Source-Version: 0.1.0+ds-4
Space: 522760
Status: successful
Version: 0.1.0+ds-4
--------------------------------------------------------------------------------
Finished at 2024-02-14T11:22:19Z
Build needed 00:18:41, 522760k disc space